
PFRMAT SS
TARGET T0122
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.97
F C 0.62
K C 0.61
D C 0.58
G C 0.78
S C 0.63
L E 0.80
I E 0.70
P E 0.68
Y E 0.87
L E 0.82
T E 0.39
A C 0.43
G C 0.62
D C 0.88
P C 0.92
D C 0.94
K H 0.81
Q H 0.89
S H 0.90
T H 0.90
L H 0.96
N H 0.95
F H 0.96
L H 0.96
L H 0.95
A H 0.91
L H 0.87
D H 0.67
E H 0.04
Y C 0.77
A C 0.92
G C 0.91
A E 0.92
I E 0.94
E E 0.94
L E 0.73
G C 0.77
I C 0.84
P C 0.89
F C 0.90
S C 0.65
D C 0.48
P C 0.44
I C 0.34
A C 0.61
D C 0.58
G C 0.62
K H 0.61
T H 0.66
I H 0.78
Q H 0.84
E H 0.88
S H 0.88
H H 0.84
Y H 0.97
R H 0.96
A H 0.91
L H 0.91
K H 0.69
N C 0.46
G C 0.97
F C 0.93
K C 0.89
L H 0.82
R H 0.96
E H 0.96
A H 0.95
F H 0.96
W H 0.96
I H 0.96
V H 0.96
K H 0.95
E H 0.95
F H 0.92
R H 0.84
R H 0.58
H C 0.49
S C 0.64
S C 0.92
T C 0.93
P C 0.96
I E 0.95
V E 0.89
L E 0.86
M E 0.71
T H 0.39
Y H 0.30
Y H 0.27
N H 0.33
P H 0.71
I H 0.84
Y H 0.69
R C 0.60
A C 0.52
G C 0.62
V H 0.94
R H 0.94
N H 0.92
F H 0.94
L H 0.96
A H 0.95
E H 0.96
A H 0.95
K H 0.92
A H 0.73
S C 0.71
G C 0.92
V C 0.96
D C 0.86
G E 0.83
I E 0.95
L E 0.93
V E 0.74
V C 0.05
D C 0.59
L C 0.78
P C 0.87
V H 0.07
F H 0.07
H C 0.03
A C 0.07
K H 0.77
E H 0.86
F H 0.91
T H 0.95
E H 0.95
I H 0.96
A H 0.95
R H 0.93
E H 0.74
E C 0.10
G C 0.89
I C 0.95
K C 0.77
T E 0.63
V E 0.94
F E 0.93
L E 0.84
A E 0.58
A C 0.65
P C 0.94
N C 0.87
T C 0.92
P C 0.96
D H 0.88
E H 0.91
R H 0.94
L H 0.95
K H 0.95
V H 0.94
I H 0.96
D H 0.94
D H 0.89
M H 0.70
T C 0.84
T C 0.94
G C 0.89
F C 0.43
V E 0.87
Y E 0.96
L E 0.95
V E 0.90
S E 0.62
L C 0.65
Y C 0.59
G C 0.47
T C 0.24
T C 0.71
G C 0.86
A C 0.71
R C 0.72
E C 0.49
E C 0.47
I C 0.21
P H 0.46
K H 0.66
T H 0.64
A H 0.91
Y H 0.95
D H 0.95
L H 0.96
L H 0.96
R H 0.96
R H 0.96
A H 0.96
K H 0.94
R H 0.91
I H 0.83
C H 0.44
R C 0.64
N C 0.93
K C 0.95
V C 0.32
A E 0.43
V E 0.36
G E 0.15
F C 0.50
G C 0.61
V C 0.45
S C 0.82
K C 0.94
R H 0.91
E H 0.94
H H 0.95
V H 0.96
V H 0.95
S H 0.94
L H 0.95
L H 0.91
K H 0.82
E H 0.04
G C 0.27
A C 0.72
N C 0.95
G E 0.90
V E 0.82
V E 0.80
V E 0.82
G H 0.67
S H 0.85
A H 0.93
L H 0.93
V H 0.96
K H 0.95
I H 0.92
I H 0.90
G H 0.80
E H 0.37
K C 0.46
G C 0.91
R C 0.92
E C 0.86
A H 0.78
T H 0.93
E H 0.95
F H 0.95
L H 0.96
K H 0.96
K H 0.96
K H 0.96
V H 0.97
E H 0.97
E H 0.85
L H 0.81
L H 0.54
G C 0.82
I C 0.98
END

