
PFRMAT AL
TARGET T0123
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.77 
REMARK CONFIDENCE: MARGINAL  (90% confidence [ ZSCORE>=4.7 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1np4
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1np4_A
V   1     T     3 
E   2     K     4 
V   3     N     5 
T   4     A     6 
P   5     I     7 
I   6     A     8 
M   7     Q     9 
T   8     T    10 
E   9     G    11 
L  10     F    12 
D  11     N    13 
T  12     K    14 
Q  13     D    15 
K  14     K    16 
V  15     Y    17 
A  16     G    20 
G  17     D    21 
T  18     V    22 
W  19     W    23 
H  20     Y    24 
T  21     V    25 
V  22     T    26 
A  23     D    27 
M  24     Y    28 
A  25     L    29 
V  26     D    30 
S  27     L    31 
D  28     E    32 
V  29     P    33 
S  30     D    34 
L  31     D    35 
L  32     V    36 
D  33     P    37 
A  34     T    48 
K  35     A    49 
S  36     S    50 
S  37     G    51 
P  38     K    52 
L  39     L    53 
K  40     K    54 
A  41     E    55 
Y  42     A    56 
V  43     L    57 
E  44     Y    58 
G  45     H    59 
L  46     Y    60 
K  47     D    61 
P  48     P    62 
T  49     K    63 
P  50     T    64 
E  51     Q    65 
G  52     D    66 
D  53     T    67 
L  54     F    68 
E  55     Y    69 
I  56     D    70 
L  57     V    71 
L  58     S    72 
Q  59     E    73 
K  60     L    74 
R  61     Q    75 
E  62     V    76 
N  63     E    77 
D  64     S    78 
K  65     L    79 
A  67     G    80 
Q  68     K    81 
E  69     Y    82 
V  70     T    83 
L  71     A    84 
L  72     N    85 
A  73     F    86 
K  74     K    87 
K  75     K    88 
T  76     V    89 
D  77     D    90 
I  78     K    91 
P  79     N    92 
A  80     G    93 
V  81     N    94 
F  82     V    95 
K  83     K    96 
I  84     V    97 
N  85     A    98 
A  86     V    99 
L  87     T   100 
D  88     N   103 
E  89     Y   104 
N  90     Y   105 
Q  91     T   106 
L  92     F   107 
F  93     T   108 
L  94     V   109 
L  95     M   110 
D  96     Y   111 
T  97     A   112 
D  98     D   113 
Y  99     D   114 
D 100     S   115 
S 101     S   116 
H 102     A   117 
L 103     L   118 
L 104     I   119 
L 105     H   120 
C 106     T   121 
M 107     C   122 
E 108     L   123 
N 109     H   124 
S 110     K   125 
A 111     G   126 
S 112     N   127 
P 113     K   128 
E 114     D   129 
H 115     L   130 
S 116     G   131 
L 117     D   132 
V 118     L   133 
C 119     Y   134 
Q 120     A   135 
S 121     V   136 
L 122     L   137 
A 123     N   138 
R 124     R   139 
T 125     N   140 
L 126     K   141 
D 129     D   142 
D 130     A   143 
Q 131     A   144 
I 132     A   145 
R 133     G   146 
E 134     D   147 
K 135     K   148 
F 136     V   149 
E 137     K   150 
D 138     S   151 
A 139     A   152 
L 140     V   153 
K 141     S   154 
T 142     A   155 
L 143     A   156 
S 144     T   157 
V 145     L   158 
P 146     E   159 
M 147     F   160 
R 148     S   161 
I 149     K   162 
L 150     F   163 
P 151     I   164 
A 152     S   165 
Q 153     T   166 
L 154     K   167 
E 155     E   168 
E 156     N   169 
Q 157     N   170 
C 158     C   171 
R 159     A   172 
V 160     Y   173 
TER
END

