
PFRMAT AL
TARGET T0127
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1doo_E
P   10 S 2
S   11 E 3
A   12 M 4
S   13 T 5
G   14 P 6
A   15 R 7
K   16 E 8
T   17 I 9
R   18 V 10
P   19 S 11
V   20 E 12
F   21 L 13
P   22 D 14
S   24 K 15
A   25 H 16
I   26 I 17
V   27 I 18
G   28 G 19
Q   29 Q 20
E   30 D 21
D   31 N 22
M   32 A 23
K   33 K 24
L   34 R 25
A   35 S 26
L   36 V 27
L   37 A 28
L   38 I 29
T   39 A 30
A   40 L 31
V   41 H 46
D   42 E 47
P   43 V 48
G   44 T 49
I   45 P 50
G   46 K 51
G   47 N 52
V   48 I 53
L   49 L 54
V   50 M 55
F   51 I 56
G   52 G 57
D   53 P 58
R   54 T 59
G   55 G 60
T   56 V 61
G   57 G 62
K   58 K 63
S   59 T 64
T   60 E 65
A   61 I 66
V   62 A 67
R   63 R 68
A   64 R 69
L   65 L 70
A   66 A 71
A   67 K 72
L   68 L 73
L   69 A 76
P   70 P 77
E   71 F 78
I   72 I 79
E   73 K 80
A   74 V 81
V   75 E 82
E   76 K 85
G   77 F 86
C   78 T 87
P   79 E 88
V   80 Y 91
S   81 V 92
S   82 G 93
P   83 K 94
N   84 E 95
V   85 V 96
E   86 D 97
M   87 N 119
I   88 R 120
P   89 Y 121
D   90 R 122
W   91 A 123
A   92 E 124
T   93 E 125
V   94 L 126
L   95 A 127
S   96 E 128
T   97 E 129
N   98 R 130
V   99 I 131
I  100 L 132
R  101 D 133
K  102 V 134
P  103 L 135
T  104 I 136
P  105 P 137
V  106 P 138
V  107 A 139
D  108 K 140
L  109 N 141
P  110 N 142
L  111 W 143
G  112 G 144
V  113 Q 145
S  114 T 146
E  115 E 147
D  116 Q 148
R  117 Q 149
V  118 Q 150
V  119 E 151
G  120 P 152
A  121 S 153
L  122 A 154
D  123 A 155
I  124 R 156
E  125 Q 157
R  126 K 161
A  127 K 162
I  128 L 163
S  129 R 164
K  130 E 165
G  131 G 166
E  132 L 216
K  133 K 217
A  134 E 238
F  135 L 239
E  136 K 240
P  137 Q 241
G  138 D 242
L  139 A 243
L  140 I 244
A  141 V 247
R  142 E 248
A  143 Q 249
N  144 H 250
G  146 G 251
Y  147 I 252
L  148 V 253
Y  149 F 254
I  150 I 255
D  151 D 256
E  152 E 257
C  153 I 258
N  154 D 259
L  155 K 260
L  156 I 261
E  157 R 274
D  158 E 275
H  159 G 276
I  160 V 277
V  161 Q 278
D  162 R 279
L  163 D 280
L  164 L 281
L  165 L 282
D  166 P 283
V  167 L 284
A  168 V 285
Q  169 E 286
E  172 G 287
N  173 C 288
V  174 T 289
V  175 V 290
E  176 S 291
R  177 T 292
D  178 K 293
G  179 H 294
L  180 G 295
S  181 M 296
I  182 V 297
R  183 K 298
H  184 T 299
P  185 H 301
A  186 I 302
R  187 L 303
F  188 F 304
V  189 I 305
L  190 A 306
V  191 S 307
G  192 G 308
S  193 A 309
G  194 Q 311
N  195 I 312
P  196 A 313
E  197 K 314
E  198 P 315
G  199 S 316
D  200 D 317
L  201 L 318
R  202 I 319
P  203 P 320
Q  204 E 321
L  205 L 322
L  206 Q 323
D  207 G 324
R  208 R 325
F  209 L 326
G  210 P 327
L  211 I 328
S  212 R 329
V  213 V 330
E  214 E 331
V  215 L 332
L  216 Q 333
S  217 A 334
P  218 L 335
R  219 T 336
R  231 T 337
D  232 S 338
T  233 D 339
Y  234 F 340
K  239 E 341
A  240 R 342
F  241 I 343
L  242 L 344
E  243 T 345
E  244 E 346
W  245 P 347
R  246 N 348
P  247 A 349
K  248 S 350
M  250 I 351
D  251 T 352
I  252 V 353
R  253 Q 354
N  254 Y 355
Q  255 K 356
I  256 A 357
L  257 L 358
E  258 M 359
A  259 A 360
R  260 T 361
E  261 E 362
R  262 G 363
L  263 V 364
K  265 N 365
V  266 I 366
E  267 E 367
A  268 F 368
P  269 T 369
N  270 D 370
T  271 S 371
A  272 G 372
L  273 I 373
Y  274 K 374
D  275 R 375
C  276 I 376
A  277 A 377
A  278 E 378
L  279 A 379
C  280 A 380
I  281 E 385
A  282 S 386
L  283 T 387
G  284 E 388
S  285 N 389
D  286 I 390
G  287 G 391
L  288 A 392
R  289 R 393
G  290 R 394
E  291 L 395
L  292 H 396
T  293 T 397
L  294 V 398
L  295 L 399
R  296 R 401
S  297 L 402
A  298 M 403
R  299 E 404
A  300 E 405
L  301 I 406
A  302 S 411
A  303 D 412
L  304 L 413
E  305 S 414
G  306 G 415
A  307 Q 416
T  308 N 417
A  309 I 418
V  310 I 420
G  311 D 421
R  312 A 422
D  313 D 423
H  314 Y 424
L  315 V 425
K  316 S 426
R  317 K 427
H  325 H 428
A  335 L 429
G  336 D 430
S  337 A 431
T  338 L 432
A  339 V 433
R  340 A 434
V  341 D 435
A  342 E 436
R  343 D 437
T  344 L 438
V  345 S 439
E  346 R 440
E  347 F 441
T  348 I 442
L  349 L 443
TER
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