
PFRMAT AL
TARGET T0127
AUTHOR 3092-8926-3558
METHOD PDB BLAST http://bioinformatics.ljcrf.edu/pdb_blast/
METHOD 1) Use PSI-Blast to collect homologs and create a sequence profile
METHOD    for the family.
METHOD 2) Use created profile to search for related proteins in PDB
MODEL  5
PARENT 2shk_B
G 47 P 4
V 48 I 5
L 49 F 6
V 50 M 7
F 51 V 8
G 52 G 9
D 53 A 10
R 54 R 11
G 55 G 12
T 56 C 13
G 57 G 14
K 58 K 15
S 59 T 16
T 60 T 17
A 61 V 18
V 62 G 19
R 63 R 20
A 64 E 21
L 65 L 22
A 66 A 23
A 67 R 24
L 68 A 25
L 69 L 26
P 70 G 27
E 71 Y 28
I 72 E 29
E 73 F 30
A 74 V 31
V 75 D 32
E 76 T 33
G 77 D 34
C 78 I 35
P 79 F 36
V 80 M 37
S 81 Q 38
S 82 H 39
P 83 T 40
N 84 S 41
V 85 G 42
E 86 M 43
M 87 T 44
I 88 V 45
P 89 A 46
D 90 D 47
W 91 V 48
A 92 V 49
T 93 A 50
V 94 A 51
L 95 E 52
S 96 G 53
T 97 W 54
N 98 P 55
V 99 G 56
R 101 F 57
K 102 R 58
P 103 R 59
T 104 R 60
P 105 E 61
V 106 S 62
V 107 E 63
D 108 A 64
L 109 L 65
P 110 Q 66
L 111 A 67
G 112 V 68
V 113 A 69
S 114 T 70
E 115 P 71
D 116 N 72
R 117 R 73
V 118 V 74
V 119 V 75
G 120 A 76
A 121 T 77
L 122 G 78
S 129 G 79
K 130 G 80
G 131 M 81
E 132 V 82
K 133 L 83
A 134 L 84
F 135 E 85
E 136 Q 86
P 137 N 87
G 138 R 88
L 139 Q 89
L 140 F 90
A 141 M 91
R 142 R 92
A 143 A 93
N 144 H 94
R 145 G 95
G 146 T 96
Y 147 V 97
L 148 V 98
Y 149 Y 99
I 150 L 100
TER
END

