
PFRMAT AL
TARGET T0127
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1idm
V  99    I 128
I 100    V 129
R 101    R 130
K 102    E 131
P 103    L 132
T 104    T 133
P 105    G 134
V 106    G 135
V 107    I 136
D 108    Y 137
L 109    F 138
P 110    P 141
L 111    R 142
G 112    G 143
V 113    M 144
S 114    S 145
E 115    E 146
D 116    A 147
R 117    E 148
A 121    A 149
L 122    W 150
D 123    N 151
I 124    T 152
E 125    E 153
R 126    R 154
I 128    Y 155
S 129    S 156
K 130    K 157
G 131    P 158
E 132    E 159
K 133    V 160
A 134    A 167
F 135    F 168
E 136    E 169
P 137    A 170
A 141    A 171
R 142    R 172
A 143    K 173
N 144    R 174
R 145    R 175
G 146    K 176
Y 147    H 177
L 148    V 178
Y 149    V 179
I 150    V 181
D 151    D 182
E 152    K 183
C 153    A 184
N 154    N 185
L 155    V 186
L 156    L 187
E 157    E 188
D 166    E 199
V 167    V 200
A 168    G 201
Q 169    R 202
S 170    G 203
G 171    Y 204
E 172    P 205
N 173    D 206
V 174    V 207
V 175    L 209
E 176    E 210
R 177    H 211
I 182    V 222
R 183    R 223
H 184    S 224
P 185    P 225
A 186    A 226
R 187    R 227
F 188    F 228
V 189    D 229
L 190    V 230
V 191    V 231
G 192    V 232
S 193    T 233
G 194    G 234
N 195    N 235
P 196    I 236
E 197    F 237
G 199    G 238
D 200    D 239
L 201    I 240
R 202    L 241
P 203    S 242
Q 204    D 243
L 205    L 244
TER
END


