
PFRMAT AL
TARGET T0128
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1abm_A
R   17 K 1
Y   18 H 2
T   19 S 3
L   20 L 4
P   21 P 5
P   22 D 6
L   23 L 7
P   24 P 8
Y   25 Y 9
A   26 D 10
Y   27 Y 11
N   28 G 12
A   29 A 13
L   30 L 14
E   31 E 15
P   32 P 16
Y   33 H 17
I   34 I 18
S   35 N 19
A   36 A 20
E   37 Q 21
I   38 I 22
M   39 M 23
Q   40 Q 24
L   41 L 25
H   42 H 26
H   43 H 27
Q   44 S 28
K   45 K 29
H   46 H 30
H   47 H 31
Q   48 A 32
G   49 A 33
Y   50 Y 34
V   51 V 35
N   52 N 36
G   53 N 37
A   54 L 38
N   55 N 39
A   56 V 40
A   57 T 41
L   58 E 42
E   59 E 43
K   60 K 44
L   61 Y 45
E   62 Q 46
K   63 E 47
F   64 A 48
R   65 L 49
K   66 A 50
G   67 K 51
E   68 G 52
A   69 D 53
Q   70 V 54
I   71 T 55
D   72 A 56
I   73 Q 57
R   74 I 58
A   75 A 59
V   76 L 60
L   77 Q 61
R   78 P 62
D   79 A 63
L   80 L 64
S   81 K 65
F   82 F 66
H   83 N 67
L   84 G 68
N   85 G 69
G   86 G 70
H   87 H 71
I   88 I 72
L   89 N 73
H   90 H 74
S   91 S 75
I   92 I 76
F   93 F 77
W   94 W 78
P   95 T 79
N   96 N 80
M   97 L 81
A   98 S 82
P   99 P 83
K  102 N 84
G  103 G 85
G  104 G 86
G  105 G 87
K  106 E 88
P  107 P 89
G  108 K 90
G  109 G 91
K  110 E 92
I  111 L 93
A  112 L 94
D  113 E 95
L  114 A 96
I  115 I 97
N  116 K 98
K  117 R 99
F  118 D 100
F  119 F 101
G  120 G 102
S  121 S 103
F  122 F 104
E  123 D 105
K  124 K 106
F  125 F 107
K  126 K 108
E  127 E 109
E  128 K 110
F  129 L 111
S  130 T 112
Q  131 A 113
A  132 A 114
A  133 S 115
K  134 V 116
N  135 G 117
V  136 V 118
E  137 Q 119
G  138 G 120
V  139 S 121
G  140 G 122
W  141 W 123
A  142 G 124
I  143 W 125
L  144 L 126
V  145 G 127
Y  146 F 128
E  147 N 129
P  148 K 130
L  149 E 131
E  150 R 132
E  151 G 133
Q  152 H 134
L  153 L 135
L  154 Q 136
I  155 I 137
L  156 A 138
Q  157 A 139
I  158 C 140
E  159 P 141
K  160 N 142
H  161 Q 143
N  162 D 144
L  163 P 145
M  164 L 146
H  165 Q 147
A  166 T 149
A  167 T 150
D  168 G 151
A  169 L 152
Q  170 I 153
V  171 P 154
L  172 L 155
L  173 L 156
A  174 G 157
L  175 I 158
D  176 D 159
V  177 V 160
W  178 W 161
E  179 E 162
H  180 H 163
A  181 A 164
Y  182 Y 165
Y  183 Y 166
L  184 L 167
Q  185 Q 168
Y  186 Y 169
K  187 K 170
N  188 N 171
D  189 V 172
R  190 R 173
G  191 P 174
S  192 D 175
Y  193 Y 176
V  194 L 177
D  195 K 178
N  196 A 179
W  197 I 180
W  198 W 181
N  199 N 182
V  200 V 183
V  201 I 184
N  202 N 185
W  203 W 186
D  204 E 187
D  205 N 188
V  206 V 189
E  207 T 190
R  208 E 191
R  209 R 192
L  210 Y 193
Q  211 M 194
K  212 A 195
A  213 C 196
L  214 K 197
N  215 K 198
TER
END

