
PFRMAT AL
TARGET T0128
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1mng_A
T   15 P 1
K   16 Y 2
R   17 P 3
Y   18 F 4
T   19 K 5
L   20 L 6
P   21 P 7
P   22 D 8
L   23 L 9
P   24 G 10
Y   25 Y 11
A   26 P 12
Y   27 Y 13
N   28 E 14
A   29 A 15
L   30 L 16
E   31 E 17
P   32 P 18
Y   33 H 19
I   34 I 20
S   35 D 21
A   36 A 22
E   37 K 23
I   38 T 24
M   39 M 25
Q   40 E 26
L   41 I 27
H   42 H 28
H   43 H 29
Q   44 Q 30
K   45 K 31
H   46 H 32
H   47 H 33
Q   48 G 34
G   49 A 35
Y   50 Y 36
V   51 V 37
N   52 T 38
G   53 N 39
A   54 L 40
N   55 N 41
A   56 A 42
A   57 A 43
L   58 L 44
E   59 E 45
K   60 K 46
L   61 Y 47
E   62 P 48
K   63 Y 49
F   64 L 50
R   65 H 51
K   66 G 52
G   67 V 53
E   68 E 54
A   69 V 55
Q   70 E 56
I   71 V 57
D   72 L 58
I   73 L 59
R   74 R 60
A   75 H 61
V   76 L 62
L   77 Q 70
R   78 T 71
D   79 A 72
L   80 V 73
S   81 R 74
F   82 N 75
H   83 N 76
L   84 G 77
N   85 G 78
G   86 G 79
H   87 H 80
I   88 L 81
L   89 N 82
H   90 H 83
S   91 S 84
I   92 L 85
F   93 F 86
W   94 W 87
P   95 R 88
N   96 L 89
M   97 L 90
A   98 T 91
P   99 P 92
K  102 G 93
G  103 G 94
G  104 A 95
G  105 K 96
K  106 E 97
P  107 P 98
G  108 V 99
G  109 G 100
K  110 E 101
I  111 L 102
A  112 K 103
D  113 K 104
L  114 A 105
I  115 I 106
N  116 D 107
K  117 E 108
F  118 Q 109
F  119 F 110
G  120 G 111
S  121 G 112
F  122 F 113
E  123 Q 114
K  124 A 115
F  125 L 116
K  126 K 117
E  127 E 118
E  128 K 119
F  129 L 120
S  130 T 121
Q  131 Q 122
A  132 A 123
A  133 A 124
K  134 M 125
N  135 G 126
V  136 R 127
E  137 F 128
G  138 G 129
V  139 S 130
G  140 G 131
W  141 W 132
A  142 A 133
I  143 W 134
L  144 L 135
V  145 V 136
Y  146 K 137
E  147 D 138
P  148 P 139
L  149 F 140
E  151 G 141
Q  152 K 142
L  153 L 143
L  154 H 144
I  155 V 145
L  156 L 146
Q  157 S 147
I  158 T 148
E  159 P 149
K  160 N 150
H  161 Q 151
N  162 D 152
L  163 N 153
M  164 P 154
H  165 V 155
A  166 M 156
A  167 E 157
D  168 G 158
A  169 F 159
Q  170 T 160
V  171 P 161
L  172 I 162
L  173 V 163
A  174 G 164
L  175 I 165
D  176 D 166
V  177 V 167
W  178 W 168
E  179 E 169
H  180 H 170
A  181 A 171
Y  182 Y 172
Y  183 Y 173
L  184 L 174
Q  185 K 175
Y  186 Y 176
K  187 Q 177
N  188 N 178
D  189 R 179
R  190 R 180
G  191 A 181
S  192 D 182
Y  193 Y 183
V  194 L 184
D  195 Q 185
N  196 A 186
W  197 I 187
W  198 W 188
N  199 N 189
V  200 V 190
V  201 L 191
N  202 N 192
W  203 W 193
D  204 D 194
D  205 V 195
V  206 A 196
E  207 E 197
R  208 E 198
R  209 F 199
L  210 F 200
Q  211 K 201
K  212 K 202
A  213 A 203
TER
END

