
PFRMAT AL
TARGET T0128
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1bsm_A
K   16 A 1
R   17 V 2
Y   18 Y 3
T   19 T 4
L   20 L 5
P   21 P 6
P   22 E 7
L   23 L 8
P   24 P 9
Y   25 Y 10
A   26 D 11
Y   27 Y 12
N   28 S 13
A   29 A 14
L   30 L 15
E   31 E 16
P   32 P 17
Y   33 Y 18
I   34 I 19
S   35 S 20
A   36 G 21
E   37 E 22
I   38 I 23
M   39 M 24
Q   40 E 25
L   41 L 26
H   42 H 27
H   43 H 28
Q   44 D 29
K   45 K 30
H   46 H 31
H   47 H 32
Q   48 K 33
G   49 A 34
Y   50 Y 35
V   51 V 36
N   52 D 37
G   53 G 38
A   54 A 39
N   55 N 40
A   56 T 41
A   57 A 42
L   58 L 43
E   59 D 44
K   60 K 45
L   61 L 46
E   62 A 47
K   63 E 48
F   64 A 49
R   65 R 50
K   66 D 51
G   67 K 52
E   68 A 53
A   69 D 54
Q   70 F 55
I   71 G 56
D   72 A 57
I   73 I 58
R   74 N 59
A   75 K 60
V   76 L 61
L   77 E 62
R   78 K 63
D   79 D 64
L   80 L 65
S   81 A 66
F   82 F 67
H   83 N 68
L   84 L 69
N   85 A 70
G   86 G 71
H   87 H 72
I   88 V 73
L   89 N 74
H   90 H 75
S   91 S 76
I   92 V 77
F   93 F 78
W   94 W 79
P   95 K 80
N   96 N 81
M   97 M 82
A   98 A 83
P   99 P 84
P  100 K 85
G  101 G 86
K  102 S 87
G  103 A 88
G  104 P 89
G  105 E 90
K  106 R 91
P  107 P 92
G  108 T 93
G  109 D 94
K  110 E 95
I  111 L 96
A  112 G 97
D  113 A 98
L  114 A 99
I  115 I 100
N  116 D 101
K  117 E 102
F  118 F 103
F  119 F 104
G  120 G 105
S  121 S 106
F  122 F 107
E  123 D 108
K  124 N 109
F  125 M 110
K  126 K 111
E  127 A 112
E  128 Q 113
F  129 F 114
S  130 T 115
Q  131 A 116
A  132 A 117
A  133 A 118
K  134 T 119
N  135 G 120
V  136 I 121
E  137 Q 122
G  138 G 123
V  139 S 124
G  140 G 125
W  141 W 126
A  142 A 127
I  143 S 128
L  144 L 129
V  145 V 130
Y  146 W 131
E  147 D 132
P  148 P 133
L  149 L 134
E  150 G 135
E  151 K 136
Q  152 R 137
L  153 I 138
L  154 N 139
I  155 T 140
L  156 L 141
Q  157 Q 142
I  158 F 143
E  159 Y 144
K  160 D 145
H  161 H 146
N  162 Q 147
L  163 N 148
M  164 N 149
H  165 L 150
A  166 P 151
A  167 A 152
D  168 G 153
A  169 S 154
Q  170 I 155
V  171 P 156
L  172 L 157
L  173 L 158
A  174 Q 159
L  175 L 160
D  176 D 161
V  177 M 162
W  178 W 163
E  179 E 164
H  180 H 165
A  181 A 166
Y  182 F 167
Y  183 Y 168
L  184 L 169
Q  185 Q 170
Y  186 Y 171
K  187 K 172
N  188 N 173
D  189 V 174
R  190 K 175
G  191 G 176
S  192 D 177
Y  193 Y 178
V  194 V 179
D  195 K 180
N  196 S 181
W  197 W 182
W  198 W 183
N  199 N 184
V  200 V 185
V  201 V 186
N  202 N 187
W  203 W 188
D  204 D 189
D  205 D 190
V  206 V 191
E  207 A 192
R  208 L 193
R  209 R 194
L  210 F 195
Q  211 S 196
K  212 E 197
A  213 A 198
L  214 R 199
N  215 V 200
G  216 A 201
TER
END

