
PFRMAT SS
TARGET T0128
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.97
R C 0.79
G C 0.80
S C 0.74
H C 0.70
H C 0.63
H C 0.59
H C 0.37
H C 0.07
H E 0.42
G E 0.45
S E 0.48
V E 0.40
T E 0.40
T C 0.08
K C 0.46
R C 0.51
Y C 0.53
T C 0.45
L C 0.84
P C 0.87
P C 0.76
L C 0.84
P C 0.88
Y C 0.77
A C 0.88
Y C 0.71
N C 0.71
A C 0.72
L C 0.73
E C 0.73
P C 0.20
Y C 0.26
I C 0.49
S C 0.86
A H 0.85
E H 0.85
I H 0.89
M H 0.94
Q H 0.89
L H 0.90
H H 0.79
H H 0.60
Q H 0.69
K H 0.11
H H 0.70
H H 0.59
Q H 0.75
G H 0.86
Y H 0.92
V H 0.80
N H 0.89
G H 0.83
A H 0.94
N H 0.88
A H 0.92
A H 0.91
L H 0.85
E H 0.78
K H 0.32
L H 0.18
E H 0.74
K H 0.61
F H 0.08
R C 0.49
K C 0.82
G C 0.85
E C 0.65
A C 0.13
Q H 0.69
I H 0.88
D H 0.86
I H 0.92
R H 0.88
A H 0.59
V H 0.35
L H 0.33
R H 0.34
D H 0.26
L H 0.07
S H 0.17
F H 0.18
H H 0.15
L H 0.57
N H 0.74
G H 0.65
H H 0.69
I H 0.84
L H 0.74
H H 0.89
S H 0.92
I H 0.91
F H 0.75
W H 0.80
P H 0.58
N C 0.02
M C 0.69
A C 0.92
P C 0.44
P C 0.58
G C 0.56
K C 0.78
G C 0.86
G C 0.88
G C 0.77
K C 0.80
P C 0.89
G C 0.91
G H 0.83
K H 0.90
I H 0.94
A H 0.95
D H 0.95
L H 0.94
I H 0.95
N H 0.87
K H 0.88
F H 0.54
F H 0.06
G C 0.91
S C 0.95
F H 0.92
E H 0.89
K H 0.96
F H 0.93
K H 0.95
E H 0.96
E H 0.96
F H 0.96
S H 0.95
Q H 0.95
A H 0.90
A H 0.85
K H 0.64
N C 0.52
V C 0.88
E C 0.91
G C 0.93
V C 0.75
G E 0.53
W E 0.80
A E 0.93
I E 0.95
L E 0.95
V E 0.93
Y E 0.96
E E 0.73
P C 0.87
L C 0.94
E C 0.94
E C 0.89
Q E 0.50
L E 0.91
L E 0.91
I E 0.95
L E 0.95
Q E 0.76
I E 0.65
E C 0.45
K C 0.87
H C 0.86
N C 0.91
L C 0.76
M C 0.89
H C 0.71
A C 0.64
A C 0.79
D C 0.85
A C 0.85
Q E 0.41
V E 0.58
L E 0.91
L E 0.95
A E 0.90
L E 0.88
D E 0.67
V C 0.32
W C 0.57
E H 0.32
H H 0.33
A H 0.41
Y H 0.08
Y H 0.14
L H 0.40
Q H 0.20
Y H 0.20
K C 0.27
N C 0.87
D C 0.81
R C 0.29
G H 0.74
S H 0.89
Y H 0.92
V H 0.93
D H 0.94
N H 0.94
W H 0.88
W H 0.82
N H 0.32
V H 0.10
V C 0.18
N C 0.89
W H 0.94
D H 0.95
D H 0.97
V H 0.96
E H 0.96
R H 0.95
R H 0.96
L H 0.96
Q H 0.95
K H 0.95
A H 0.93
L H 0.86
N H 0.50
G C 0.11
Q C 0.64
I C 0.81
A C 0.80
L C 0.20
K C 0.65
L C 0.96
END

