
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS168_2
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS168_2.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    48        23 - 70          4.94    25.78
  LONGEST_CONTINUOUS_SEGMENT:    48        24 - 71          4.91    25.61
  LCS_AVERAGE:     35.73

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         2 - 27          1.59    15.17
  LCS_AVERAGE:     17.24

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         3 - 26          0.33    15.42
  LCS_AVERAGE:     13.80

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      3    4   31     3    4    4    4    4    5    8    9   11   13   24   33   37   43   48   50   56   58   60   62 
LCS_GDT     S       2     S       2      3   26   31     3    4    4    4    6   23   28   33   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     F       3     F       3     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     I       4     I       4     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     E       5     E       5     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     K       6     K       6     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     M       7     M       7     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     I       8     I       8     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     G       9     G       9     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     S      10     S      10     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     L      11     L      11     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     N      12     N      12     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     D      13     D      13     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     K      14     K      14     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     R      15     R      15     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     E      16     E      16     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     W      17     W      17     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     K      18     K      18     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     A      19     A      19     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     M      20     M      20     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     E      21     E      21     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     A      22     A      22     24   26   31    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     R      23     R      23     24   26   48    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   61   63   64 
LCS_GDT     A      24     A      24     24   26   48    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   61   63   64 
LCS_GDT     K      25     K      25     24   26   48    23   25   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   61   63   64 
LCS_GDT     A      26     A      26     24   26   48    20   25   26   28   29   30   33   34   35   39   42   44   48   52   54   56   57   61   63   64 
LCS_GDT     L      27     L      27      4   26   48     1    3    5   10   21   24   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     P      28     P      28     17   22   48     4   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     K      29     K      29     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   49   53   55   56   57   58   61   64 
LCS_GDT     E      30     E      30     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   49   53   55   56   57   58   63   64 
LCS_GDT     Y      31     Y      31     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     H      32     H      32     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     H      33     H      33     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     A      34     A      34     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     Y      35     Y      35     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     K      36     K      36     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     A      37     A      37     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     I      38     I      38     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     Q      39     Q      39     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     K      40     K      40     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     Y      41     Y      41     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     M      42     M      42     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     W      43     W      43     17   22   48    15   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     T      44     T      44     17   22   48     3    7   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     S      45     S      45     17   22   48     3    3    5   11   19   23   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     G      46     G      46      3   22   48     3   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     G      47     G      47      3   22   48     0   18   18   19   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     P      48     P      48      3   22   48     3    3    8   18   20   21   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     T      49     T      49      3   22   48     3    3    7    8   13   18   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     D      50     D      50     21   22   48     3   12   20   21   22   23   25   26   36   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     W      51     W      51     21   22   48     8   16   20   21   22   23   25   26   30   35   44   48   51   53   55   56   57   61   63   64 
LCS_GDT     Q      52     Q      52     21   22   48    12   18   20   21   22   23   25   26   31   39   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     D      53     D      53     21   22   48    10   18   20   21   22   23   25   29   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     T      54     T      54     21   22   48     8   18   20   21   22   23   25   29   34   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     K      55     K      55     21   22   48     8   18   20   21   22   23   25   31   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     R      56     R      56     21   22   48    12   18   20   21   22   23   28   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     I      57     I      57     21   22   48    11   18   20   21   22   23   28   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     F      58     F      58     21   22   48    12   18   20   21   22   23   25   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     G      59     G      59     21   22   48    12   18   20   21   22   23   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     G      60     G      60     21   22   48    12   18   20   21   22   23   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     I      61     I      61     21   22   48    12   18   20   21   22   23   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     L      62     L      62     21   22   48    12   18   20   21   22   23   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     D      63     D      63     21   22   48    11   18   20   21   22   23   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     L      64     L      64     21   22   48    12   18   20   21   22   23   29   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     F      65     F      65     21   22   48    12   18   20   21   22   23   26   30   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     E      66     E      66     21   22   48    12   18   20   21   22   23   25   31   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     E      67     E      67     21   22   48    12   18   20   21   22   23   25   33   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     G      68     G      68     21   22   48    12   18   20   21   22   23   25   31   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     A      69     A      69     21   22   48    11   18   20   21   22   23   25   26   30   39   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     A      70     A      70     21   22   48     9   16   20   21   22   23   25   26   30   39   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     E      71     E      71      4   22   48     0    3    5    7   15   19   22   25   30   34   43   48   51   53   55   56   57   61   63   64 
LCS_GDT     G      72     G      72      4    6   47     4    4    5    8   10   30   33   34   35   39   42   44   47   49   55   56   57   61   63   64 
LCS_GDT     K      73     K      73      4    6   37     4   25   26   28   29   30   33   34   35   39   42   44   47   49   55   56   57   61   63   64 
LCS_GDT     K      74     K      74      5    6   37     4    4   26   28   29   30   33   34   35   39   42   44   47   49   53   55   56   60   63   64 
LCS_GDT     V      75     V      75      5    6   37     4   19   26   28   29   30   33   34   35   39   42   44   47   53   55   56   57   61   63   64 
LCS_GDT     T      76     T      76      5    6   37     4    4    5    5   28   30   33   34   35   39   42   45   51   53   55   56   57   61   63   64 
LCS_GDT     D      77     D      77      5    7   37     4    4    5    8   10   12   31   33   35   39   41   44   49   53   55   56   57   61   63   64 
LCS_GDT     L      78     L      78      5    7   37     4    4    7   26   28   30   33   34   35   39   42   44   51   53   55   56   57   61   63   64 
LCS_GDT     T      79     T      79      5    7   37     4   19   26   28   29   30   33   34   35   36   40   43   51   53   55   56   57   61   63   64 
LCS_GDT     G      80     G      80      5    7   36     4    5    6    9   10   15   29   30   35   36   40   42   44   48   50   54   56   61   63   64 
LCS_GDT     E      81     E      81      5   15   35     4    5    5    8   10   13   16   20   23   36   40   42   44   48   50   54   56   61   63   64 
LCS_GDT     D      82     D      82     11   15   35    10   11   11   12   13   14   16   20   23   27   40   42   44   50   54   56   57   61   63   64 
LCS_GDT     V      83     V      83     11   15   35    10   11   11   12   13   14   26   28   30   34   40   43   51   53   55   56   57   61   63   64 
LCS_GDT     A      84     A      84     11   15   35    10   11   11   22   26   26   30   31   35   36   40   43   51   53   55   56   57   61   63   64 
LCS_GDT     A      85     A      85     11   15   35    10   11   11   26   29   30   33   34   37   40   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     F      86     F      86     11   15   35    10   11   11   19   20   21   32   34   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     C      87     C      87     11   15   35    10   12   20   21   27   30   33   34   38   42   45   48   51   53   55   56   57   61   63   64 
LCS_GDT     D      88     D      88     11   15   35    10   11   11   12   20   24   26   28   35   39   43   48   49   50   53   55   56   58   61   63 
LCS_GDT     E      89     E      89     11   15   35    10   11   11   12   13   17   22   33   35   39   43   48   49   50   53   55   56   58   61   63 
LCS_GDT     L      90     L      90     11   15   35    10   11   11   12   13   15   21   32   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     M      91     M      91     11   15   35    10   11   11   12   15   16   23   30   34   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     K      92     K      92     11   15   35     6   11   11   12   15   17   19   25   33   38   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     D      93     D      93      4   15   35     4    4    6   12   13   14   16   20   28   35   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     T      94     T      94      4   15   35     4    5   10   12   13   14   16   20   22   35   40   44   47   49   53   55   56   58   61   63 
LCS_GDT     K      95     K      95      3   15   35     3    4    5    9   13   14   17   19   22   24   30   40   47   49   53   55   56   58   61   63 
LCS_GDT     T      96     T      96     14   15   35     7   14   14   15   18   25   28   31   35   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     W      97     W      97     14   15   35    12   14   14   15   15   16   19   22   32   39   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     M      98     M      98     14   15   35    12   14   14   15   15   17   19   22   24   26   32   40   46   49   53   55   56   58   61   63 
LCS_GDT     D      99     D      99     14   15   34    12   14   14   15   15   17   19   22   25   35   40   44   47   49   53   55   56   58   61   63 
LCS_GDT     K     100     K     100     14   15   34    12   14   14   15   15   17   19   25   33   38   42   44   47   49   53   55   56   58   61   63 
LCS_GDT     Y     101     Y     101     14   15   34    12   14   14   15   15   17   19   22   24   26   29   36   45   48   53   55   55   58   61   63 
LCS_GDT     R     102     R     102     14   15   34    12   14   14   15   15   17   19   22   24   26   30   33   37   42   47   52   54   58   61   63 
LCS_GDT     T     103     T     103     14   15   34    12   14   14   15   15   17   19   22   24   26   31   36   45   48   53   55   55   58   61   63 
LCS_GDT     K     104     K     104     14   15   34    12   14   14   15   15   17   19   22   24   26   32   38   46   49   53   55   55   58   61   63 
LCS_GDT     L     105     L     105     14   15   34    12   14   14   15   15   17   19   22   24   26   28   32   35   40   43   51   52   58   61   63 
LCS_GDT     N     106     N     106     14   15   34    12   14   14   15   15   17   19   22   24   26   28   32   37   41   46   51   52   56   60   63 
LCS_GDT     D     107     D     107     14   15   34    12   14   14   15   15   17   19   22   24   26   30   36   38   42   47   52   54   58   61   63 
LCS_GDT     S     108     S     108     14   15   34    12   14   14   15   15   17   19   22   24   26   28   32   37   41   46   51   54   58   61   63 
LCS_GDT     I     109     I     109     14   15   34    11   14   14   15   15   17   19   22   24   26   28   32   35   38   41   47   52   56   60   62 
LCS_GDT     G     110     G     110      3   15   34     3    4    5    6    8   13   18   20   21   24   27   29   31   32   34   37   42   45   46   50 
LCS_GDT     R     111     R     111      3    4   34     3    4    5    6    7    7   10   14   21   22   25   27   28   29   32   34   37   40   41   44 
LCS_GDT     D     112     D     112      0    3   34     0    1    3    3    6    9   11   17   21   22   25   27   28   29   32   34   37   39   41   44 
LCS_AVERAGE  LCS_A:  22.26  (  13.80   17.24   35.73 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     23     25     26     28     29     30     33     34     38     42     45     48     51     53     55     56     57     61     63     64 
GDT PERCENT_CA  20.54  22.32  23.21  25.00  25.89  26.79  29.46  30.36  33.93  37.50  40.18  42.86  45.54  47.32  49.11  50.00  50.89  54.46  56.25  57.14
GDT RMS_LOCAL    0.31   0.40   0.52   0.76   0.91   1.08   1.52   1.62   3.23   3.54   3.95   4.09   4.89   4.93   5.18   5.25   5.38   5.94   6.10   6.18
GDT RMS_ALL_CA  15.45  15.33  15.43  15.65  15.50  15.43  15.39  15.39  26.69  26.30  25.97  25.73  25.53  25.71  25.62  25.58  25.66  25.00  24.97  25.11

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         10.262
LGA    S       2      S       2          6.469
LGA    F       3      F       3          0.604
LGA    I       4      I       4          0.259
LGA    E       5      E       5          0.064
LGA    K       6      K       6          0.409
LGA    M       7      M       7          0.484
LGA    I       8      I       8          0.311
LGA    G       9      G       9          0.288
LGA    S      10      S      10          0.674
LGA    L      11      L      11          0.736
LGA    N      12      N      12          0.398
LGA    D      13      D      13          0.418
LGA    K      14      K      14          0.331
LGA    R      15      R      15          0.298
LGA    E      16      E      16          0.344
LGA    W      17      W      17          0.297
LGA    K      18      K      18          0.174
LGA    A      19      A      19          0.198
LGA    M      20      M      20          0.106
LGA    E      21      E      21          0.361
LGA    A      22      A      22          0.554
LGA    R      23      R      23          0.736
LGA    A      24      A      24          0.651
LGA    K      25      K      25          0.736
LGA    A      26      A      26          0.974
LGA    L      27      L      27          6.384
LGA    P      28      P      28         13.113
LGA    K      29      K      29         18.887
LGA    E      30      E      30         17.510
LGA    Y      31      Y      31         12.801
LGA    H      32      H      32         16.554
LGA    H      33      H      33         19.599
LGA    A      34      A      34         15.445
LGA    Y      35      Y      35         14.913
LGA    K      36      K      36         20.178
LGA    A      37      A      37         19.598
LGA    I      38      I      38         15.666
LGA    Q      39      Q      39         19.647
LGA    K      40      K      40         22.869
LGA    Y      41      Y      41         19.090
LGA    M      42      M      42         18.574
LGA    W      43      W      43         23.749
LGA    T      44      T      44         22.388
LGA    S      45      S      45         18.439
LGA    G      46      G      46         16.254
LGA    G      47      G      47         18.771
LGA    P      48      P      48         18.043
LGA    T      49      T      49         22.968
LGA    D      50      D      50         21.859
LGA    W      51      W      51         20.446
LGA    Q      52      Q      52         20.371
LGA    D      53      D      53         16.299
LGA    T      54      T      54         14.589
LGA    K      55      K      55         15.796
LGA    R      56      R      56         14.626
LGA    I      57      I      57         10.352
LGA    F      58      F      58         10.521
LGA    G      59      G      59         12.291
LGA    G      60      G      60         10.059
LGA    I      61      I      61          6.486
LGA    L      62      L      62          7.793
LGA    D      63      D      63         10.052
LGA    L      64      L      64          8.480
LGA    F      65      F      65          6.332
LGA    E      66      E      66          7.805
LGA    E      67      E      67         10.887
LGA    G      68      G      68         10.389
LGA    A      69      A      69          8.063
LGA    A      70      A      70         10.408
LGA    E      71      E      71          8.771
LGA    G      72      G      72          3.489
LGA    K      73      K      73          1.019
LGA    K      74      K      74          2.455
LGA    V      75      V      75          1.693
LGA    T      76      T      76          2.852
LGA    D      77      D      77          5.358
LGA    L      78      L      78          3.489
LGA    T      79      T      79          3.335
LGA    G      80      G      80          6.092
LGA    E      81      E      81          7.447
LGA    D      82      D      82          8.366
LGA    V      83      V      83          7.735
LGA    A      84      A      84          6.232
LGA    A      85      A      85          2.417
LGA    F      86      F      86          3.620
LGA    C      87      C      87          3.376
LGA    D      88      D      88          7.513
LGA    E      89      E      89          8.955
LGA    L      90      L      90          7.895
LGA    M      91      M      91         11.047
LGA    K      92      K      92         14.704
LGA    D      93      D      93         15.127
LGA    T      94      T      94         14.394
LGA    K      95      K      95         16.994
LGA    T      96      T      96         12.041
LGA    W      97      W      97         10.450
LGA    M      98      M      98         16.701
LGA    D      99      D      99         19.541
LGA    K     100      K     100         16.498
LGA    Y     101      Y     101         18.766
LGA    R     102      R     102         24.817
LGA    T     103      T     103         24.462
LGA    K     104      K     104         21.755
LGA    L     105      L     105         27.341
LGA    N     106      N     106         31.355
LGA    D     107      D     107         28.895
LGA    S     108      S     108         29.012
LGA    I     109      I     109         35.244
LGA    G     110      G     110         39.992
LGA    R     111      R     111         44.234
LGA    D     112      D     112         44.996

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     34    1.62    31.920    28.547     1.973

LGA_LOCAL      RMSD =  1.623  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 15.385  Number of atoms =  112 
Std_ALL_ATOMS  RMSD = 13.002  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.296504 * X  +  -0.898890 * Y  +  -0.322618 * Z  +  20.338684
  Y_new =  -0.415505 * X  +  -0.425579 * Y  +   0.803889 * Z  +  24.254589
  Z_new =  -0.859907 * X  +  -0.104307 * Y  +  -0.499679 * Z  +  -0.061325 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.935800    0.205793  [ DEG:  -168.2089     11.7911 ]
  Theta =   1.035088    2.106504  [ DEG:    59.3062    120.6938 ]
  Phi   =  -0.951001    2.190592  [ DEG:   -54.4883    125.5117 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS168_2                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS168_2.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   34   1.62  28.547    13.00
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS168_2
PFRMAT TS
TARGET T0283
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      28.904  15.485  20.470  1.00 25.00           C
ATOM      2  CA  SER     2      31.333  12.931  19.092  1.00 25.00           C
ATOM      3  CA  PHE     3      29.850   9.663  20.299  1.00 25.00           C
ATOM      4  CA  ILE     4      29.034   6.889  17.787  1.00 25.00           C
ATOM      5  CA  GLU     5      25.489   8.277  17.368  1.00 25.00           C
ATOM      6  CA  LYS     6      26.906  11.787  16.782  1.00 25.00           C
ATOM      7  CA  MET     7      29.329  10.397  14.162  1.00 25.00           C
ATOM      8  CA  ILE     8      26.440   8.588  12.415  1.00 25.00           C
ATOM      9  CA  GLY     9      24.390  11.823  12.400  1.00 25.00           C
ATOM     10  CA  SER    10      27.361  13.727  10.909  1.00 25.00           C
ATOM     11  CA  LEU    11      27.748  11.049   8.199  1.00 25.00           C
ATOM     12  CA  ASN    12      24.013  11.294   7.388  1.00 25.00           C
ATOM     13  CA  ASP    13      24.293  15.104   7.136  1.00 25.00           C
ATOM     14  CA  LYS    14      27.301  14.754   4.791  1.00 25.00           C
ATOM     15  CA  ARG    15      25.346  12.282   2.615  1.00 25.00           C
ATOM     16  CA  GLU    16      22.387  14.708   2.472  1.00 25.00           C
ATOM     17  CA  TRP    17      24.738  17.556   1.456  1.00 25.00           C
ATOM     18  CA  LYS    18      26.251  15.358  -1.292  1.00 25.00           C
ATOM     19  CA  ALA    19      22.743  14.493  -2.564  1.00 25.00           C
ATOM     20  CA  MET    20      21.819  18.208  -2.617  1.00 25.00           C
ATOM     21  CA  GLU    21      25.018  19.001  -4.570  1.00 25.00           C
ATOM     22  CA  ALA    22      24.201  16.228  -7.081  1.00 25.00           C
ATOM     23  CA  ARG    23      20.656  17.616  -7.500  1.00 25.00           C
ATOM     24  CA  ALA    24      22.074  21.125  -8.086  1.00 25.00           C
ATOM     25  CA  LYS    25      24.496  19.737 -10.707  1.00 25.00           C
ATOM     26  CA  ALA    26      21.607  17.927 -12.453  1.00 25.00           C
ATOM     27  CA  LEU    27      18.222  16.650 -11.283  1.00 25.00           C
ATOM     28  CA  PRO    28      16.169  15.186  -8.482  1.00 25.00           C
ATOM     29  CA  LYS    29      15.648  13.755  -5.015  1.00 25.00           C
ATOM     30  CA  GLU    30      17.640  16.854  -3.973  1.00 25.00           C
ATOM     31  CA  TYR    31      14.783  19.117  -5.151  1.00 25.00           C
ATOM     32  CA  HIS    32      12.272  17.023  -3.157  1.00 25.00           C
ATOM     33  CA  HIS    33      14.489  17.279  -0.045  1.00 25.00           C
ATOM     34  CA  ALA    34      14.719  21.077  -0.493  1.00 25.00           C
ATOM     35  CA  TYR    35      10.910  21.294  -0.822  1.00 25.00           C
ATOM     36  CA  LYS    36      10.490  19.214   2.366  1.00 25.00           C
ATOM     37  CA  ALA    37      12.933  21.511   4.215  1.00 25.00           C
ATOM     38  CA  ILE    38      10.992  24.586   3.011  1.00 25.00           C
ATOM     39  CA  GLN    39       7.712  23.012   4.207  1.00 25.00           C
ATOM     40  CA  LYS    40       9.280  22.276   7.622  1.00 25.00           C
ATOM     41  CA  TYR    41      10.504  25.897   7.867  1.00 25.00           C
ATOM     42  CA  MET    42       6.998  27.167   6.993  1.00 25.00           C
ATOM     43  CA  TRP    43       5.480  24.898   9.678  1.00 25.00           C
ATOM     44  CA  THR    44       8.001  26.208  12.246  1.00 25.00           C
ATOM     45  CA  SER    45       9.001  29.685  11.168  1.00 25.00           C
ATOM     46  CA  GLY    46       7.419  32.426   8.995  1.00 25.00           C
ATOM     47  CA  GLY    47       4.239  31.351   7.091  1.00 25.00           C
ATOM     48  CA  PRO    48       4.708  33.913   4.266  1.00 25.00           C
ATOM     49  CA  THR    49       2.830  31.480   1.976  1.00 25.00           C
ATOM     50  CA  ASP    50       2.936  27.793   2.810  1.00 25.00           C
ATOM     51  CA  TRP    51       3.657  24.441   1.146  1.00 25.00           C
ATOM     52  CA  GLN    52       2.618  26.718  -1.754  1.00 25.00           C
ATOM     53  CA  ASP    53       5.748  28.862  -1.222  1.00 25.00           C
ATOM     54  CA  THR    54       7.933  25.717  -1.227  1.00 25.00           C
ATOM     55  CA  LYS    55       6.278  24.541  -4.475  1.00 25.00           C
ATOM     56  CA  ARG    56       6.903  27.970  -6.062  1.00 25.00           C
ATOM     57  CA  ILE    57      10.574  27.830  -4.981  1.00 25.00           C
ATOM     58  CA  PHE    58      10.909  24.326  -6.488  1.00 25.00           C
ATOM     59  CA  GLY    59       9.355  25.559  -9.764  1.00 25.00           C
ATOM     60  CA  GLY    60      11.794  28.512  -9.837  1.00 25.00           C
ATOM     61  CA  ILE    61      14.734  26.129  -9.255  1.00 25.00           C
ATOM     62  CA  LEU    62      13.509  23.881 -12.102  1.00 25.00           C
ATOM     63  CA  ASP    63      13.228  26.920 -14.415  1.00 25.00           C
ATOM     64  CA  LEU    64      16.785  27.989 -13.483  1.00 25.00           C
ATOM     65  CA  PHE    65      18.065  24.454 -14.212  1.00 25.00           C
ATOM     66  CA  GLU    66      16.297  24.488 -17.609  1.00 25.00           C
ATOM     67  CA  GLU    67      17.865  27.888 -18.418  1.00 25.00           C
ATOM     68  CA  GLY    68      21.323  26.549 -17.459  1.00 25.00           C
ATOM     69  CA  ALA    69      20.788  23.491 -19.701  1.00 25.00           C
ATOM     70  CA  ALA    70      19.750  25.768 -22.601  1.00 25.00           C
ATOM     71  CA  GLU    71      16.801  28.203 -22.748  1.00 25.00           C
ATOM     72  CA  GLY    72      14.260  30.401 -20.974  1.00 25.00           C
ATOM     73  CA  LYS    73      12.949  31.182 -17.451  1.00 25.00           C
ATOM     74  CA  LYS    74      13.793  34.144 -15.194  1.00 25.00           C
ATOM     75  CA  VAL    75      15.487  33.257 -11.908  1.00 25.00           C
ATOM     76  CA  THR    76      18.568  34.899 -10.335  1.00 25.00           C
ATOM     77  CA  ASP    77      16.704  38.238 -10.111  1.00 25.00           C
ATOM     78  CA  LEU    78      13.729  36.493  -8.447  1.00 25.00           C
ATOM     79  CA  THR    79      11.137  34.107  -7.142  1.00 25.00           C
ATOM     80  CA  GLY    80       9.225  36.863  -5.428  1.00 25.00           C
ATOM     81  CA  GLU    81      11.712  39.628  -4.515  1.00 25.00           C
ATOM     82  CA  ASP    82      11.592  38.557  -0.841  1.00 25.00           C
ATOM     83  CA  VAL    83      12.224  34.919  -1.855  1.00 25.00           C
ATOM     84  CA  ALA    84      15.201  36.008  -4.002  1.00 25.00           C
ATOM     85  CA  ALA    85      16.612  38.023  -1.067  1.00 25.00           C
ATOM     86  CA  PHE    86      16.221  34.988   1.236  1.00 25.00           C
ATOM     87  CA  CYS    87      18.023  32.783  -1.324  1.00 25.00           C
ATOM     88  CA  ASP    88      20.865  35.338  -1.564  1.00 25.00           C
ATOM     89  CA  GLU    89      21.153  35.412   2.255  1.00 25.00           C
ATOM     90  CA  LEU    90      21.288  31.584   2.342  1.00 25.00           C
ATOM     91  CA  MET    91      24.029  31.595  -0.332  1.00 25.00           C
ATOM     92  CA  LYS    92      26.019  34.172   1.684  1.00 25.00           C
ATOM     93  CA  ASP    93      25.663  32.022   4.833  1.00 25.00           C
ATOM     94  CA  THR    94      26.874  28.946   2.899  1.00 25.00           C
ATOM     95  CA  LYS    95      29.886  30.920   1.596  1.00 25.00           C
ATOM     96  CA  THR    96      30.707  32.065   5.158  1.00 25.00           C
ATOM     97  CA  TRP    97      30.486  28.448   6.398  1.00 25.00           C
ATOM     98  CA  MET    98      32.819  27.314   3.580  1.00 25.00           C
ATOM     99  CA  ASP    99      35.306  30.080   4.493  1.00 25.00           C
ATOM    100  CA  LYS   100      35.185  29.008   8.169  1.00 25.00           C
ATOM    101  CA  TYR   101      35.818  25.369   7.154  1.00 25.00           C
ATOM    102  CA  ARG   102      38.795  26.459   5.006  1.00 25.00           C
ATOM    103  CA  THR   103      40.206  28.474   7.941  1.00 25.00           C
ATOM    104  CA  LYS   104      39.815  25.439  10.244  1.00 25.00           C
ATOM    105  CA  LEU   105      41.617  23.233   7.684  1.00 25.00           C
ATOM    106  CA  ASN   106      44.458  25.789   7.445  1.00 25.00           C
ATOM    107  CA  ASP   107      44.747  25.862  11.263  1.00 25.00           C
ATOM    108  CA  SER   108      44.881  22.035  11.350  1.00 25.00           C
ATOM    109  CA  ILE   109      47.624  22.047   8.677  1.00 25.00           C
ATOM    110  CA  GLY   110      46.676  18.816   6.903  1.00 25.00           C
ATOM    111  CA  ARG   111      46.405  15.559   8.853  1.00 25.00           C
ATOM    112  CA  ASP   112      44.791  12.191   9.316  1.00 25.00           C
TER
END
