
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS393_2
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS393_2.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    62        29 - 90          4.94    28.06
  LCS_AVERAGE:     45.34

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31         2 - 32          1.98    14.08
  LCS_AVERAGE:     18.59

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28         3 - 30          0.85    14.36
  LCS_AVERAGE:     14.72

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      3   30   39     3    5    9   15   20   26   32   39   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     S       2     S       2      3   31   39     3    3    3   14   17   21   29   32   37   43   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     F       3     F       3     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     I       4     I       4     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     E       5     E       5     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     K       6     K       6     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     M       7     M       7     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     I       8     I       8     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     G       9     G       9     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     S      10     S      10     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     L      11     L      11     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     N      12     N      12     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     D      13     D      13     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     K      14     K      14     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     R      15     R      15     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     E      16     E      16     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     W      17     W      17     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     K      18     K      18     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     A      19     A      19     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     M      20     M      20     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     E      21     E      21     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     A      22     A      22     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     R      23     R      23     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     A      24     A      24     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     K      25     K      25     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     A      26     A      26     28   31   39    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     L      27     L      27     28   31   47    24   27   27   28   29   32   37   40   42   46   48   50   51   51   54   55   57   59   60   63 
LCS_GDT     P      28     P      28     28   31   59    10   27   27   28   28   30   36   40   42   46   48   50   51   52   54   57   61   61   64   66 
LCS_GDT     K      29     K      29     28   31   62    15   27   27   28   28   30   33   40   42   46   48   51   53   55   58   61   62   62   64   66 
LCS_GDT     E      30     E      30     28   31   62    15   15   16   17   19   22   31   35   41   46   48   51   53   55   58   61   62   62   64   66 
LCS_GDT     Y      31     Y      31     16   31   62    15   15   16   26   27   30   32   34   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     H      32     H      32     16   31   62    15   15   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     H      33     H      33     16   18   62    15   15   16   17   19   25   29   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     A      34     A      34     16   18   62    15   15   27   28   28   28   31   39   41   46   48   51   53   55   58   61   62   62   64   66 
LCS_GDT     Y      35     Y      35     16   18   62    15   15   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     K      36     K      36     16   18   62    15   15   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     A      37     A      37     16   18   62    15   15   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     I      38     I      38     16   18   62    15   15   16   17   18   22   25   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     Q      39     Q      39     16   18   62    15   15   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     K      40     K      40     16   18   62    15   15   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     Y      41     Y      41     16   18   62    15   15   16   17   18   21   25   29   37   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     M      42     M      42     16   18   62    15   15   16   17   18   21   25   29   32   40   45   50   53   55   58   61   62   62   64   66 
LCS_GDT     W      43     W      43     16   18   62    15   15   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     T      44     T      44     16   18   62     3   13   16   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     S      45     S      45      3   18   62     3    3    5    5    9   15   20   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     G      46     G      46      3   18   62     3    3    5    6   11   20   25   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     G      47     G      47      3    5   62     3    3    5    7   13   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     P      48     P      48      5   24   62     3    5    5   14   19   22   22   28   35   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     T      49     T      49      5   24   62     3    5    5    9   15   22   22   28   33   43   47   50   53   55   58   61   62   62   64   66 
LCS_GDT     D      50     D      50     21   24   62     3    7   18   21   21   22   27   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     W      51     W      51     21   24   62     8   15   20   21   21   22   22   28   35   40   46   51   53   55   58   61   62   62   64   66 
LCS_GDT     Q      52     Q      52     21   24   62    12   18   20   21   21   22   22   24   29   38   43   47   52   54   58   61   62   62   64   66 
LCS_GDT     D      53     D      53     21   24   62    10   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     T      54     T      54     21   24   62     8   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     K      55     K      55     21   24   62     8   18   20   21   21   22   22   24   33   40   44   51   53   55   58   61   62   62   64   66 
LCS_GDT     R      56     R      56     21   24   62    12   18   20   21   21   22   22   28   33   41   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     I      57     I      57     21   24   62    11   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     F      58     F      58     21   24   62    12   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     G      59     G      59     21   24   62    12   18   20   21   21   22   22   32   38   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     G      60     G      60     21   24   62    12   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     I      61     I      61     21   24   62    12   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     L      62     L      62     21   24   62    12   18   20   21   21   22   27   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     D      63     D      63     21   24   62    11   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     L      64     L      64     21   24   62    12   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     F      65     F      65     21   24   62    12   18   20   21   21   22   25   33   39   42   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     E      66     E      66     21   24   62    12   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     E      67     E      67     21   24   62    12   18   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     G      68     G      68     21   24   62    12   18   20   21   21   22   25   33   39   42   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     A      69     A      69     21   24   62    11   18   20   21   21   22   22   29   39   42   46   51   53   55   58   61   62   62   64   66 
LCS_GDT     A      70     A      70     21   24   62     9   16   20   21   21   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     E      71     E      71      3   24   62     3    4    5    5    8   16   25   30   37   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     G      72     G      72      3    6   62     3    3    4    5    6    9   16   28   36   43   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     K      73     K      73      3    6   62     3    3    5    5    6    8    9   11   14   20   26   40   46   52   58   61   62   62   64   66 
LCS_GDT     K      74     K      74      3    6   62     3    4    5    5    6    8   11   12   15   22   30   40   48   54   58   61   62   62   64   66 
LCS_GDT     V      75     V      75      3    6   62     3    4   10   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     T      76     T      76      3    4   62     3    3   12   17   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     D      77     D      77      3    4   62     3    3    3    3    4    9   15   24   36   42   45   50   53   55   58   61   62   62   64   66 
LCS_GDT     L      78     L      78      3    6   62     3    3    3    4    6    6    9   14   22   23   30   37   48   54   58   61   62   62   64   66 
LCS_GDT     T      79     T      79      5    6   62     4    5    5    6   15   16   17   20   25   29   34   42   52   54   58   61   62   62   64   66 
LCS_GDT     G      80     G      80      5    6   62     4    5    6    9   10   15   19   20   23   29   34   40   48   54   58   61   62   62   64   66 
LCS_GDT     E      81     E      81      5   15   62     4    5    5    6   12   14   18   20   23   26   27   40   48   53   57   61   62   62   64   66 
LCS_GDT     D      82     D      82     11   15   62    10   11   11   12   14   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     V      83     V      83     11   15   62    10   11   11   12   14   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     A      84     A      84     11   15   62    10   11   11   12   15   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     A      85     A      85     11   15   62    10   11   11   12   19   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     F      86     F      86     11   15   62    10   11   11   12   14   22   28   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     C      87     C      87     11   15   62    10   11   11   13   15   16   19   28   37   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     D      88     D      88     11   15   62    10   11   11   12   13   16   20   28   37   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     E      89     E      89     11   15   62    10   11   11   12   13   19   27   33   39   44   47   51   53   55   58   61   62   62   64   66 
LCS_GDT     L      90     L      90     11   15   62    10   11   11   12   13   14   18   20   33   39   47   49   53   55   56   60   62   62   64   66 
LCS_GDT     M      91     M      91     11   15   33    10   11   11   12   14   15   23   40   42   46   48   50   51   52   54   57   60   62   64   66 
LCS_GDT     K      92     K      92     11   15   33     6   11   11   12   14   16   19   28   35   43   48   50   51   52   55   58   60   62   64   66 
LCS_GDT     D      93     D      93      4   15   33     4    4    6   12   13   14   18   20   23   27   30   35   42   49   54   55   57   62   63   66 
LCS_GDT     T      94     T      94      4   15   33     4    5   10   12   13   14   18   20   23   27   43   50   51   51   54   55   57   58   60   62 
LCS_GDT     K      95     K      95      3   15   33     3    4    5    9   13   25   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     T      96     T      96     14   15   33     7   14   27   28   29   31   36   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     W      97     W      97     14   15   33    12   14   14   20   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     M      98     M      98     14   15   33    12   14   14   15   20   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     D      99     D      99     14   15   33    12   14   16   24   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     K     100     K     100     14   15   33    12   14   17   25   29   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     Y     101     Y     101     14   15   33    12   14   14   17   28   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     R     102     R     102     14   15   33    12   14   14   17   26   31   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     T     103     T     103     14   15   33    12   14   14   18   28   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     K     104     K     104     14   15   33    12   14   14   18   28   32   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     L     105     L     105     14   15   33    12   14   14   16   21   28   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     N     106     N     106     14   15   33    12   14   14   16   21   28   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     D     107     D     107     14   15   33    12   14   14   16   21   28   37   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     S     108     S     108     14   15   33    12   14   14   16   21   26   33   40   42   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     I     109     I     109     14   15   33    11   14   14   15   20   25   29   36   40   46   48   50   51   51   54   55   57   58   60   62 
LCS_GDT     G     110     G     110      3   15   33     3    3    3    4    8   14   15   19   24   28   30   36   38   45   50   53   56   57   58   62 
LCS_GDT     R     111     R     111      3    4   33     3    3    3    3    5    6    9   11   16   20   25   28   32   34   36   38   41   45   49   52 
LCS_GDT     D     112     D     112      0    4   30     0    0    3    3    5    6    7    8   10   11   14   15   17   29   31   32   32   45   45   47 
LCS_AVERAGE  LCS_A:  26.22  (  14.72   18.59   45.34 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     24     27     27     28     29     32     37     40     42     46     48     51     53     55     58     61     62     62     64     66 
GDT PERCENT_CA  21.43  24.11  24.11  25.00  25.89  28.57  33.04  35.71  37.50  41.07  42.86  45.54  47.32  49.11  51.79  54.46  55.36  55.36  57.14  58.93
GDT RMS_LOCAL    0.32   0.52   0.52   0.74   1.31   1.85   2.26   2.43   2.58   2.97   3.17   3.89   4.02   4.16   4.59   4.89   4.94   4.94   5.17   5.44
GDT RMS_ALL_CA  14.23  14.35  14.35  13.91  13.72  13.67  13.73  13.66  13.63  13.54  13.55  28.10  28.10  27.85  28.05  28.16  28.06  28.06  27.89  27.58

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.521
LGA    S       2      S       2          6.934
LGA    F       3      F       3          2.860
LGA    I       4      I       4          2.286
LGA    E       5      E       5          3.247
LGA    K       6      K       6          2.965
LGA    M       7      M       7          1.369
LGA    I       8      I       8          1.509
LGA    G       9      G       9          2.061
LGA    S      10      S      10          1.576
LGA    L      11      L      11          0.767
LGA    N      12      N      12          0.939
LGA    D      13      D      13          0.960
LGA    K      14      K      14          1.318
LGA    R      15      R      15          1.274
LGA    E      16      E      16          0.745
LGA    W      17      W      17          1.453
LGA    K      18      K      18          2.154
LGA    A      19      A      19          1.701
LGA    M      20      M      20          1.301
LGA    E      21      E      21          2.354
LGA    A      22      A      22          2.685
LGA    R      23      R      23          1.793
LGA    A      24      A      24          2.340
LGA    K      25      K      25          3.330
LGA    A      26      A      26          2.970
LGA    L      27      L      27          2.764
LGA    P      28      P      28          3.689
LGA    K      29      K      29          4.886
LGA    E      30      E      30          5.134
LGA    Y      31      Y      31          5.848
LGA    H      32      H      32          8.798
LGA    H      33      H      33          8.890
LGA    A      34      A      34          6.419
LGA    Y      35      Y      35          9.848
LGA    K      36      K      36         15.108
LGA    A      37      A      37         14.551
LGA    I      38      I      38         12.103
LGA    Q      39      Q      39         18.507
LGA    K      40      K      40         22.375
LGA    Y      41      Y      41         19.544
LGA    M      42      M      42         20.093
LGA    W      43      W      43         27.292
LGA    T      44      T      44         28.293
LGA    S      45      S      45         27.287
LGA    G      46      G      46         20.530
LGA    G      47      G      47         19.995
LGA    P      48      P      48         17.490
LGA    T      49      T      49         21.252
LGA    D      50      D      50         25.571
LGA    W      51      W      51         27.162
LGA    Q      52      Q      52         25.723
LGA    D      53      D      53         20.829
LGA    T      54      T      54         19.048
LGA    K      55      K      55         19.169
LGA    R      56      R      56         17.480
LGA    I      57      I      57         12.698
LGA    F      58      F      58         11.980
LGA    G      59      G      59         14.253
LGA    G      60      G      60         13.721
LGA    I      61      I      61         10.823
LGA    L      62      L      62         11.318
LGA    D      63      D      63         16.031
LGA    L      64      L      64         16.816
LGA    F      65      F      65         15.239
LGA    E      66      E      66         17.314
LGA    E      67      E      67         22.985
LGA    G      68      G      68         23.445
LGA    A      69      A      69         21.665
LGA    A      70      A      70         25.945
LGA    E      71      E      71         25.397
LGA    G      72      G      72         20.223
LGA    K      73      K      73         17.258
LGA    K      74      K      74         13.144
LGA    V      75      V      75          9.799
LGA    T      76      T      76         14.749
LGA    D      77      D      77         14.985
LGA    L      78      L      78          8.885
LGA    T      79      T      79         12.178
LGA    G      80      G      80         18.930
LGA    E      81      E      81         22.090
LGA    D      82      D      82         24.069
LGA    V      83      V      83         18.210
LGA    A      84      A      84         16.973
LGA    A      85      A      85         18.078
LGA    F      86      F      86         15.354
LGA    C      87      C      87         10.112
LGA    D      88      D      88         10.684
LGA    E      89      E      89         11.777
LGA    L      90      L      90          8.566
LGA    M      91      M      91          4.229
LGA    K      92      K      92          6.376
LGA    D      93      D      93          8.015
LGA    T      94      T      94          5.706
LGA    K      95      K      95          3.619
LGA    T      96      T      96          3.814
LGA    W      97      W      97          3.512
LGA    M      98      M      98          3.131
LGA    D      99      D      99          1.321
LGA    K     100      K     100          1.462
LGA    Y     101      Y     101          2.334
LGA    R     102      R     102          2.395
LGA    T     103      T     103          1.738
LGA    K     104      K     104          1.534
LGA    L     105      L     105          3.077
LGA    N     106      N     106          3.400
LGA    D     107      D     107          3.211
LGA    S     108      S     108          3.769
LGA    I     109      I     109          5.174
LGA    G     110      G     110         11.368
LGA    R     111      R     111         16.070
LGA    D     112      D     112         17.212

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     40    2.43    34.821    30.525     1.579

LGA_LOCAL      RMSD =  2.433  Number of atoms =   40  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.609  Number of atoms =  112 
Std_ALL_ATOMS  RMSD = 13.358  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.099849 * X  +  -0.082492 * Y  +   0.991577 * Z  +  18.936537
  Y_new =   0.928736 * X  +   0.349874 * Y  +   0.122628 * Z  +  28.249170
  Z_new =  -0.357043 * X  +   0.933158 * Y  +   0.041679 * Z  +   3.701065 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.526162   -1.615431  [ DEG:    87.4426    -92.5574 ]
  Theta =   0.365100    2.776493  [ DEG:    20.9187    159.0813 ]
  Phi   =   1.677896   -1.463697  [ DEG:    96.1364    -83.8636 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS393_2                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS393_2.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   40   2.43  30.525    13.36
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS393_2
PFRMAT TS
TARGET T0283
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      32.842   7.732  23.245  1.00 25.00           C
ATOM      2  CA  SER     2      31.555   4.550  21.696  1.00 25.00           C
ATOM      3  CA  PHE     3      28.772   6.647  20.216  1.00 25.00           C
ATOM      4  CA  ILE     4      28.978   4.485  17.062  1.00 25.00           C
ATOM      5  CA  GLU     5      25.296   5.206  16.296  1.00 25.00           C
ATOM      6  CA  LYS     6      25.911   8.959  16.750  1.00 25.00           C
ATOM      7  CA  MET     7      28.923   8.775  14.391  1.00 25.00           C
ATOM      8  CA  ILE     8      26.804   6.926  11.790  1.00 25.00           C
ATOM      9  CA  GLY     9      24.071   9.593  12.085  1.00 25.00           C
ATOM     10  CA  SER    10      26.682  12.356  11.618  1.00 25.00           C
ATOM     11  CA  LEU    11      28.051  10.570   8.518  1.00 25.00           C
ATOM     12  CA  ASN    12      24.508  10.268   7.096  1.00 25.00           C
ATOM     13  CA  ASP    13      23.911  13.999   7.722  1.00 25.00           C
ATOM     14  CA  LYS    14      27.205  14.846   5.960  1.00 25.00           C
ATOM     15  CA  ARG    15      26.200  12.662   2.980  1.00 25.00           C
ATOM     16  CA  GLU    16      22.799  14.414   2.811  1.00 25.00           C
ATOM     17  CA  TRP    17      24.527  17.830   2.884  1.00 25.00           C
ATOM     18  CA  LYS    18      26.871  16.733   0.061  1.00 25.00           C
ATOM     19  CA  ALA    19      23.871  15.538  -1.999  1.00 25.00           C
ATOM     20  CA  MET    20      22.113  18.891  -1.428  1.00 25.00           C
ATOM     21  CA  GLU    21      25.266  20.762  -2.533  1.00 25.00           C
ATOM     22  CA  ALA    22      25.473  18.599  -5.687  1.00 25.00           C
ATOM     23  CA  ARG    23      21.791  19.321  -6.452  1.00 25.00           C
ATOM     24  CA  ALA    24      22.405  23.073  -5.999  1.00 25.00           C
ATOM     25  CA  LYS    25      25.417  22.890  -8.357  1.00 25.00           C
ATOM     26  CA  ALA    26      23.299  21.041 -10.958  1.00 25.00           C
ATOM     27  CA  LEU    27      21.460  24.328 -11.210  1.00 25.00           C
ATOM     28  CA  PRO    28      20.746  27.299 -13.534  1.00 25.00           C
ATOM     29  CA  LYS    29      23.120  30.271 -12.888  1.00 25.00           C
ATOM     30  CA  GLU    30      22.036  28.974  -9.452  1.00 25.00           C
ATOM     31  CA  TYR    31      22.089  32.541  -8.061  1.00 25.00           C
ATOM     32  CA  HIS    32      19.971  33.751 -11.014  1.00 25.00           C
ATOM     33  CA  HIS    33      17.470  30.913 -10.413  1.00 25.00           C
ATOM     34  CA  ALA    34      17.272  31.840  -6.702  1.00 25.00           C
ATOM     35  CA  TYR    35      16.658  35.506  -7.626  1.00 25.00           C
ATOM     36  CA  LYS    36      13.884  34.456 -10.050  1.00 25.00           C
ATOM     37  CA  ALA    37      12.277  32.306  -7.318  1.00 25.00           C
ATOM     38  CA  ILE    38      12.424  35.252  -4.877  1.00 25.00           C
ATOM     39  CA  GLN    39      10.796  37.530  -7.490  1.00 25.00           C
ATOM     40  CA  LYS    40       8.030  34.943  -8.057  1.00 25.00           C
ATOM     41  CA  TYR    41       7.435  34.715  -4.280  1.00 25.00           C
ATOM     42  CA  MET    42       7.223  38.532  -4.059  1.00 25.00           C
ATOM     43  CA  TRP    43       4.708  38.585  -6.945  1.00 25.00           C
ATOM     44  CA  THR    44       2.609  35.900  -5.198  1.00 25.00           C
ATOM     45  CA  SER    45       2.934  32.381  -3.687  1.00 25.00           C
ATOM     46  CA  GLY    46       5.076  31.546  -0.621  1.00 25.00           C
ATOM     47  CA  GLY    47       3.574  32.729   2.644  1.00 25.00           C
ATOM     48  CA  PRO    48       4.338  31.526   6.177  1.00 25.00           C
ATOM     49  CA  THR    49       3.496  34.869   7.841  1.00 25.00           C
ATOM     50  CA  ASP    50       1.281  36.923   5.538  1.00 25.00           C
ATOM     51  CA  TRP    51       1.620  37.340   1.735  1.00 25.00           C
ATOM     52  CA  GLN    52       3.951  39.849   0.022  1.00 25.00           C
ATOM     53  CA  ASP    53       5.661  40.583   3.368  1.00 25.00           C
ATOM     54  CA  THR    54       6.115  36.831   3.988  1.00 25.00           C
ATOM     55  CA  LYS    55       7.626  36.412   0.494  1.00 25.00           C
ATOM     56  CA  ARG    56      10.027  39.323   1.156  1.00 25.00           C
ATOM     57  CA  ILE    57      11.061  37.743   4.488  1.00 25.00           C
ATOM     58  CA  PHE    58      11.680  34.394   2.736  1.00 25.00           C
ATOM     59  CA  GLY    59      13.810  36.148   0.080  1.00 25.00           C
ATOM     60  CA  GLY    60      15.829  37.901   2.822  1.00 25.00           C
ATOM     61  CA  ILE    61      16.377  34.549   4.593  1.00 25.00           C
ATOM     62  CA  LEU    62      17.546  32.974   1.304  1.00 25.00           C
ATOM     63  CA  ASP    63      19.971  35.885   0.743  1.00 25.00           C
ATOM     64  CA  LEU    64      21.340  35.461   4.296  1.00 25.00           C
ATOM     65  CA  PHE    65      21.818  31.711   3.690  1.00 25.00           C
ATOM     66  CA  GLU    66      23.662  32.448   0.416  1.00 25.00           C
ATOM     67  CA  GLU    67      25.922  34.956   2.226  1.00 25.00           C
ATOM     68  CA  GLY    68      26.672  32.360   4.940  1.00 25.00           C
ATOM     69  CA  ALA    69      27.530  29.766   2.256  1.00 25.00           C
ATOM     70  CA  ALA    70      29.862  32.275   0.542  1.00 25.00           C
ATOM     71  CA  GLU    71      28.857  34.587  -2.326  1.00 25.00           C
ATOM     72  CA  GLY    72      27.312  34.031  -5.754  1.00 25.00           C
ATOM     73  CA  LYS    73      24.077  35.018  -4.119  1.00 25.00           C
ATOM     74  CA  LYS    74      20.959  33.018  -3.435  1.00 25.00           C
ATOM     75  CA  VAL    75      20.443  29.247  -3.378  1.00 25.00           C
ATOM     76  CA  THR    76      20.075  25.915  -1.527  1.00 25.00           C
ATOM     77  CA  ASP    77      18.256  24.412  -4.544  1.00 25.00           C
ATOM     78  CA  LEU    78      15.051  25.967  -5.882  1.00 25.00           C
ATOM     79  CA  THR    79      12.751  23.331  -7.247  1.00 25.00           C
ATOM     80  CA  GLY    80      10.203  20.456  -7.056  1.00 25.00           C
ATOM     81  CA  GLU    81       7.785  21.471  -4.265  1.00 25.00           C
ATOM     82  CA  ASP    82       9.683  19.259  -1.782  1.00 25.00           C
ATOM     83  CA  VAL    83      12.996  20.846  -2.863  1.00 25.00           C
ATOM     84  CA  ALA    84      11.502  24.342  -2.399  1.00 25.00           C
ATOM     85  CA  ALA    85      10.262  23.374   1.094  1.00 25.00           C
ATOM     86  CA  PHE    86      13.742  22.048   1.989  1.00 25.00           C
ATOM     87  CA  CYS    87      15.328  25.310   0.758  1.00 25.00           C
ATOM     88  CA  ASP    88      12.852  27.336   2.863  1.00 25.00           C
ATOM     89  CA  GLU    89      13.680  25.205   5.935  1.00 25.00           C
ATOM     90  CA  LEU    90      17.424  25.752   5.335  1.00 25.00           C
ATOM     91  CA  MET    91      16.850  29.527   5.044  1.00 25.00           C
ATOM     92  CA  LYS    92      14.861  29.503   8.317  1.00 25.00           C
ATOM     93  CA  ASP    93      17.680  27.570  10.044  1.00 25.00           C
ATOM     94  CA  THR    94      20.245  30.099   8.744  1.00 25.00           C
ATOM     95  CA  LYS    95      18.090  32.988  10.040  1.00 25.00           C
ATOM     96  CA  THR    96      17.829  31.288  13.463  1.00 25.00           C
ATOM     97  CA  TRP    97      21.629  30.824  13.550  1.00 25.00           C
ATOM     98  CA  MET    98      22.126  34.518  12.669  1.00 25.00           C
ATOM     99  CA  ASP    99      19.708  35.534  15.460  1.00 25.00           C
ATOM    100  CA  LYS   100      21.606  33.320  17.944  1.00 25.00           C
ATOM    101  CA  TYR   101      24.919  34.908  16.862  1.00 25.00           C
ATOM    102  CA  ARG   102      23.425  38.403  17.328  1.00 25.00           C
ATOM    103  CA  THR   103      22.185  37.436  20.819  1.00 25.00           C
ATOM    104  CA  LYS   104      25.664  36.110  21.714  1.00 25.00           C
ATOM    105  CA  LEU   105      27.251  39.372  20.483  1.00 25.00           C
ATOM    106  CA  ASN   106      24.775  41.399  22.588  1.00 25.00           C
ATOM    107  CA  ASP   107      25.603  39.267  25.660  1.00 25.00           C
ATOM    108  CA  SER   108      29.347  39.814  25.061  1.00 25.00           C
ATOM    109  CA  ILE   109      28.773  43.590  24.769  1.00 25.00           C
ATOM    110  CA  GLY   110      32.533  44.293  24.570  1.00 25.00           C
ATOM    111  CA  ARG   111      34.656  41.580  22.858  1.00 25.00           C
ATOM    112  CA  ASP   112      35.370  38.448  20.752  1.00 25.00           C
TER
END
