
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# ERROR! Check the ATOM numbers 62 and 63 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 73 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# ERROR! Check the ATOM numbers 81 and 85 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 82 and 86 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 83 and 87 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 84 and 88 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 101 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# ERROR! Check the ATOM numbers 157 and 158 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 187 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# Molecule1: number of CA atoms  155 (  161),  selected  132 , name T0287TS383_3
# Molecule2: number of CA atoms  161 ( 1345),  selected  132 , name T0287.pdb
# PARAMETERS: T0287TS383_3.T0287.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        22 - 65          4.81    23.03
  LONGEST_CONTINUOUS_SEGMENT:    41        23 - 66          4.90    23.15
  LCS_AVERAGE:     18.16

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        30 - 61          1.83    20.67
  LCS_AVERAGE:      9.47

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        32 - 56          0.86    19.17
  LCS_AVERAGE:      7.29

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  161
LCS_GDT     K      21     K      21      3    8   40     3    3    4    9   11   15   19   21   23   26   28   29   30   32   35   36   40   42   44   46 
LCS_GDT     L      22     L      22      7    8   41     4    7    7    7   10   12   19   21   23   26   28   29   30   32   36   40   42   46   47   49 
LCS_GDT     I      23     I      23      7    8   41     4    7    7    7    7    8    8    9   21   25   28   29   30   32   35   36   40   42   44   46 
LCS_GDT     E      24     E      24      7    8   41     4    7    7    7    7   10   15   18   23   26   28   29   30   32   35   36   40   46   46   48 
LCS_GDT     S      25     S      25      7    8   41     4    7    7    7    9   15   19   28   31   32   34   35   36   37   38   40   42   46   47   49 
LCS_GDT     L      26     L      26      7    8   41     4    7    7    8   10   15   19   25   29   32   34   35   36   37   38   40   42   46   47   49 
LCS_GDT     Q      27     Q      27      7    8   41     4    7    7    7    7    8   12   17   21   26   28   34   36   37   38   40   42   46   47   49 
LCS_GDT     E      28     E      28      7    8   41     4    7    7    7    7   10   15   27   31   32   34   35   36   37   38   40   42   46   47   49 
LCS_GDT     N      29     N      29      3   28   41     3    3    4    5   10   27   29   29   31   32   34   35   36   37   38   40   42   46   47   49 
LCS_GDT     E      30     E      30      6   29   41     4    5   17   25   26   27   29   29   31   32   34   35   36   40   43   47   49   53   55   57 
LCS_GDT     L      31     L      31     24   29   41     4    6   19   25   26   27   29   29   31   32   34   36   40   42   46   49   51   55   58   59 
LCS_GDT     L      32     L      32     25   29   41     4   21   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     N      33     N      33     25   29   41    12   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     T      34     T      34     25   29   41    15   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     D      35     D      35     25   29   41    12   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     E      36     E      36     25   29   41    15   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K      37     K      37     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K      38     K      38     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K      39     K      39     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     I      40     I      40     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     I      41     I      41     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     D      42     D      42     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     Q      43     Q      43     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     I      44     I      44     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K      45     K      45     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     T      46     T      46     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     M      47     M      47     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     H      48     H      48     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     D      49     D      49     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     F      50     F      50     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     F      51     F      51     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K      52     K      52     25   29   41    16   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     Q      53     Q      53     25   29   41    15   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     M      54     M      54     25   29   41    15   22   23   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     H      55     H      55     25   29   41     4    9   22   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     T      56     T      56     25   29   41     4   12   22   25   26   27   29   29   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     A      60     A      60      8   29   41     8    8    8   16   23   25   27   29   31   32   34   37   39   42   46   49   52   55   58   59 
LCS_GDT     L      61     L      61      8   29   41     8    8    8   19   24   27   29   29   31   32   34   37   39   42   46   49   52   55   58   59 
LCS_GDT     D      62     D      62      8    9   41     8    8    8    9   14   18   24   27   31   32   33   34   37   41   43   46   49   51   54   56 
LCS_GDT     K      63     K      63      8    9   41     8    8    8    9   10   11   13   16   20   25   30   34   37   40   42   45   47   51   53   56 
LCS_GDT     V      64     V      64      8    9   41     8    8    8    9   10   11   12   14   18   21   24   31   36   40   41   45   47   51   53   54 
LCS_GDT     L      65     L      65      8    9   41     8    8    8    9   10   11   13   16   20   27   30   34   37   40   41   43   47   51   53   54 
LCS_GDT     R      66     R      66      8    9   41     8    8    8    9   10   11   12   14   17   21   25   31   32   35   37   42   46   49   52   54 
LCS_GDT     N      67     N      67      8    9   40     8    8    8    9   10   11   12   14   17   19   22   26   30   33   35   38   41   44   46   49 
LCS_GDT     Y      68     Y      68      3    9   36     1    3    3    4    5    6   10   13   16   19   23   25   30   34   37   41   45   48   49   53 
LCS_GDT     M      69     M      69      3    4   28     2    3    3    4    8   10   13   17   19   21   23   27   30   35   37   41   45   47   49   53 
LCS_GDT     K      70     K      70      3    4   28     0    1    3    4    5   11   14   16   19   21   23   25   30   34   37   41   45   48   49   53 
LCS_GDT     D      71     D      71      3    4   28     1    2    4    6   10   12   14   16   19   21   25   30   37   40   41   45   47   51   53   54 
LCS_GDT     A      74     A      74      6    7   28     5    6    7    8   10   15   18   25   26   30   34   37   40   44   47   49   52   55   58   59 
LCS_GDT     V      75     V      75      6    7   28     5    6    6    8    8   10   13   16   19   26   31   34   37   42   47   49   52   55   58   59 
LCS_GDT     I      76     I      76      6    7   28     5    6    6    8   10   13   22   26   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K      77     K      77      6   17   28     5    6    6   13   15   16   17   21   30   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     S      78     S      78      6   17   28     5    6    6    8    8    9   11   14   17   23   31   37   40   44   47   49   52   55   58   59 
LCS_GDT     I      79     I      79      6   17   28     4    6   10   12   15   16   19   21   23   26   28   32   34   42   47   49   52   55   58   59 
LCS_GDT     G      80     G      80     14   17   28     3    7   14   14   15   16   19   22   25   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     V      81     V      81     14   17   28    10   13   14   14   15   16   19   23   31   32   35   36   40   43   47   49   52   55   58   59 
LCS_GDT     D      82     D      82     14   17   28    10   13   14   14   15   16   19   21   23   26   28   29   30   33   36   47   47   49   52   54 
LCS_GDT     K      83     K      83     14   17   28    10   13   14   14   15   16   19   21   23   26   28   29   31   35   42   47   51   54   58   59 
LCS_GDT     F      84     F      84     14   17   28    10   13   14   14   15   16   19   23   31   32   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K      85     K      85     14   17   28    10   13   14   14   15   16   19   21   23   26   29   32   34   37   40   44   46   49   52   54 
LCS_GDT     K      86     K      86     14   17   28    10   13   14   14   15   16   19   21   23   26   28   30   32   35   37   44   46   49   52   54 
LCS_GDT     V      87     V      87     14   17   28     8   13   14   14   15   16   19   21   23   26   29   32   34   39   42   47   51   55   58   59 
LCS_GDT     Y      88     Y      88     14   17   28     8   13   14   14   15   16   19   21   23   26   29   34   35   39   42   44   49   50   57   59 
LCS_GDT     R      89     R      89     14   17   28     8   13   14   14   15   16   19   21   23   26   29   32   34   37   40   44   46   49   52   54 
LCS_GDT     L      90     L      90     14   17   28    10   13   14   14   15   16   19   21   23   26   29   32   33   37   40   44   46   49   52   54 
LCS_GDT     L      91     L      91     14   17   28    10   13   14   14   15   16   19   21   23   26   29   34   35   39   42   46   49   51   58   59 
LCS_GDT     E      92     E      92     14   17   28    10   13   14   14   15   16   19   21   23   26   29   32   34   37   40   44   46   49   52   54 
LCS_GDT     S      93     S      93     14   17   28    10   13   14   14   15   16   19   21   23   26   29   32   34   37   40   44   46   49   52   54 
LCS_GDT     I     102     I     102      3    4   28     3    3    6    7    8    8    8   16   16   18   20   22   26   36   40   44   46   49   52   54 
LCS_GDT     A     103     A     103      3    4   28     3    3    3    3    3    4    5    8    9   11   19   23   31   37   40   44   46   49   52   54 
LCS_GDT     E     104     E     104      3    4   28     3    3    3    3    3    4    4   10   13   18   20   23   33   37   39   44   46   49   52   54 
LCS_GDT     F     108     F     108      4    7   28     4    4    6    7    8    8    9   14   18   24   30   33   36   39   42   44   52   55   58   59 
LCS_GDT     L     109     L     109      4    7   28     4    4    6    7   10   15   19   25   27   30   33   38   40   44   47   49   52   55   58   59 
LCS_GDT     F     110     F     110      4    7   24     4    4    6    7    9   13   18   22   25   30   33   34   40   44   47   49   52   55   58   59 
LCS_GDT     S     111     S     111      4    7   20     4    4    6    9   14   17   27   28   30   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     K     112     K     112      4    7   20     4    4    5    7    8    8   15   28   31   32   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     F     113     F     113      4    7   20     4    4   16   21   24   26   27   28   30   32   35   37   40   44   47   49   52   55   58   59 
LCS_GDT     D     114     D     114      4    7   20     4    4    6    7   21   26   28   28   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     G     119     G     119      8    9   20     3    7    8    8    8    9    9   11   13   14   16   21   22   25   30   34   39   42   44   46 
LCS_GDT     I     120     I     120      8    9   20     3    7    8    8    8    9    9   11   13   14   17   21   22   25   28   32   39   42   42   45 
LCS_GDT     F     121     F     121      8    9   20     3    7    8    8    8    9    9   11   13   14   16   21   22   25   28   32   39   42   44   46 
LCS_GDT     L     122     L     122      8    9   20     3    7    8    8    8    9   10   11   13   14   16   21   22   25   28   34   39   42   44   46 
LCS_GDT     P     123     P     123      8    9   20     3    7    8    8    8    9    9   11   13   14   16   21   22   25   30   34   39   42   44   46 
LCS_GDT     F     124     F     124      8    9   20     3    7    8    8    8    9    9   11   13   14   16   21   22   25   28   32   39   42   42   45 
LCS_GDT     F     125     F     125      8    9   20     3    7    8    8    8    9    9   11   13   14   16   21   22   25   29   36   39   42   44   46 
LCS_GDT     S     126     S     126      9    9   20     7    8    8    9   10   10   10   12   15   19   22   25   30   32   38   39   42   46   47   49 
LCS_GDT     K     127     K     127      9    9   20     7    8    8    9   10   11   14   15   15   17   20   22   25   27   29   35   39   46   46   48 
LCS_GDT     P     128     P     128      9    9   20     7    8    8    9   10   10   10   14   15   17   20   22   25   27   37   40   42   46   47   49 
LCS_GDT     I     129     I     129      9    9   20     7    8    8    9   10   10   10   15   15   31   33   35   36   37   38   40   42   46   47   50 
LCS_GDT     M     130     M     130      9    9   20     7    8    8    9   10   11   14   16   19   21   34   35   36   37   38   40   42   46   47   49 
LCS_GDT     F     131     F     131      9    9   20     7    8    8    9   10   10   11   13   15   17   19   22   24   32   38   40   42   46   47   49 
LCS_GDT     K     132     K     132      9    9   20     7    8    8    9   10   10   10   12   12   16   19   22   26   33   38   39   42   45   47   50 
LCS_GDT     M     133     M     133      9    9   20     7    8    8    9   10   10   11   14   21   29   31   33   34   35   38   40   42   45   48   51 
LCS_GDT     S     134     S     134      9    9   20     4    5    5    9   10   10   12   13   14   15   20   25   29   33   38   39   42   45   47   50 
LCS_GDT     I     135     I     135      4    5   20     4    5    5    6    6    9   10   13   13   15   18   20   24   32   33   39   42   45   48   51 
LCS_GDT     R     136     R     136      4    5   19     4    5    5    6    6    9   12   13   14   16   19   22   24   37   38   45   47   49   51   56 
LCS_GDT     E     137     E     137      4    9   19     4    5    5    6   17   21   22   26   29   30   31   35   38   41   44   46   48   51   53   56 
LCS_GDT     Q     141     Q     141      6    9   19     5    5    6    8   19   22   23   25   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     I     142     I     142      6    9   19     5    5    8   22   26   26   28   28   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     E     143     E     143      6    9   19     5    5   18   24   26   26   28   28   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     L     144     L     144      6    9   19     5    5    6    8    9   11   14   17   24   32   34   38   40   44   47   49   52   55   58   59 
LCS_GDT     Y     145     Y     145      6    9   19     5    5    6    8    9   11   14   15   15   17   20   22   25   31   36   48   52   55   58   59 
LCS_GDT     G     146     G     146      6    9   19     4    4    6    8    9   11   14   15   15   17   20   22   25   40   45   49   52   55   58   59 
LCS_GDT     T     147     T     147      5    9   19     4    4    5    8    9   11   14   15   15   17   19   22   25   27   28   31   35   43   49   51 
LCS_GDT     N     148     N     148      4    9   22     4    4    5    8    9   11   14   14   15   17   19   21   25   27   28   31   33   35   36   38 
LCS_GDT     F     155     F     155      4   16   23     3    3    5   13   15   15   17   17   18   19   19   20   21   21   21   23   25   27   29   29 
LCS_GDT     V     156     V     156     12   16   23     3   12   12   14   15   15   17   17   18   19   19   20   21   21   21   24   25   27   29   32 
LCS_GDT     M     157     M     157     12   16   23     6   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     T     158     T     158     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     D     159     D     159     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     E     160     E     160     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     E     161     E     161     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     V     162     V     162     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     N     163     N     163     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     F     164     F     164     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     Y     165     Y     165     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     A     166     A     166     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   25   27   29   32 
LCS_GDT     N     167     N     167     12   16   23    10   12   12   14   15   15   17   17   18   19   19   20   21   21   22   24   26   28   30   32 
LCS_GDT     L     168     L     168      4   16   23     3    3    4    6   11   15   17   17   18   19   19   20   21   21   22   24   26   28   30   32 
LCS_GDT     K     169     K     169      4   16   23     3   11   12   14   15   15   17   17   18   19   19   20   21   21   22   24   26   28   30   32 
LCS_GDT     T     170     T     170     12   16   23     3   10   12   14   15   15   17   17   17   19   19   20   21   21   22   24   26   28   30   32 
LCS_GDT     I     171     I     171     12   13   23     3   10   12   12   12   13   17   17   18   19   19   20   21   21   22   24   26   28   30   31 
LCS_GDT     E     172     E     172     12   13   23     8   10   12   12   12   13   14   16   18   19   19   20   21   21   22   24   26   28   30   31 
LCS_GDT     Q     173     Q     173     12   13   23     8   10   12   12   12   13   14   16   18   19   19   20   21   21   22   23   26   28   30   31 
LCS_GDT     Y     174     Y     174     12   13   23     8   10   12   12   12   13   14   16   16   16   17   20   21   21   22   23   26   28   30   36 
LCS_GDT     N     175     N     175     12   13   23     8   10   12   12   12   13   14   16   16   16   17   20   21   21   22   23   27   28   32   36 
LCS_GDT     D     176     D     176     12   13   23     8   10   12   12   12   13   14   16   16   16   17   18   20   21   22   23   27   31   33   56 
LCS_GDT     Y     177     Y     177     12   13   23     8   10   12   12   12   13   14   16   16   16   17   18   20   41   45   49   52   55   58   59 
LCS_GDT     V     178     V     178     12   13   18     8   10   12   12   12   13   14   18   21   32   34   38   40   44   47   49   52   55   58   59 
LCS_GDT     R     179     R     179     12   13   18     3   10   12   12   12   13   14   18   25   29   34   37   40   42   46   49   51   54   58   59 
LCS_GDT     D     180     D     180     12   13   18     8   10   12   12   12   13   14   25   31   33   35   38   40   44   47   49   52   55   58   59 
LCS_GDT     L     181     L     181     12   13   18     3    5   12   12   12   13   14   16   28   31   35   37   40   44   47   49   51   55   58   59 
LCS_AVERAGE  LCS_A:  11.64  (   7.29    9.47   18.16 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     22     23     25     26     27     29     29     31     33     35     38     40     44     47     49     52     55     58     59 
GDT PERCENT_CA   9.94  13.66  14.29  15.53  16.15  16.77  18.01  18.01  19.25  20.50  21.74  23.60  24.84  27.33  29.19  30.43  32.30  34.16  36.02  36.65
GDT RMS_LOCAL    0.26   0.53   0.64   0.86   1.15   1.38   1.90   1.83   2.10   2.73   2.68   3.33   3.54   4.06   4.38   4.75   5.04   5.32   5.60   5.70
GDT RMS_ALL_CA  18.86  18.98  19.18  19.17  19.68  20.24  21.30  20.67  18.13  17.81  18.14  17.77  17.86  17.75  17.72  17.55  17.53  17.58  17.61  17.63

#      Molecule1      Molecule2       DISTANCE
LGA    K      21      K      21         19.272
LGA    L      22      L      22         13.958
LGA    I      23      I      23         14.539
LGA    E      24      E      24         16.032
LGA    S      25      S      25         11.479
LGA    L      26      L      26          6.819
LGA    Q      27      Q      27         10.309
LGA    E      28      E      28         11.640
LGA    N      29      N      29          6.138
LGA    E      30      E      30          2.752
LGA    L      31      L      31          2.169
LGA    L      32      L      32          1.091
LGA    N      33      N      33          1.126
LGA    T      34      T      34          1.319
LGA    D      35      D      35          1.052
LGA    E      36      E      36          1.123
LGA    K      37      K      37          0.845
LGA    K      38      K      38          1.114
LGA    K      39      K      39          1.948
LGA    I      40      I      40          1.693
LGA    I      41      I      41          1.033
LGA    D      42      D      42          1.265
LGA    Q      43      Q      43          2.004
LGA    I      44      I      44          1.554
LGA    K      45      K      45          0.531
LGA    T      46      T      46          1.336
LGA    M      47      M      47          1.867
LGA    H      48      H      48          1.351
LGA    D      49      D      49          0.500
LGA    F      50      F      50          1.954
LGA    F      51      F      51          2.611
LGA    K      52      K      52          1.687
LGA    Q      53      Q      53          0.607
LGA    M      54      M      54          2.672
LGA    H      55      H      55          3.650
LGA    T      56      T      56          3.181
LGA    A      60      A      60          3.711
LGA    L      61      L      61          2.519
LGA    D      62      D      62          7.438
LGA    K      63      K      63         10.806
LGA    V      64      V      64         10.609
LGA    L      65      L      65         10.083
LGA    R      66      R      66         15.164
LGA    N      67      N      67         18.311
LGA    Y      68      Y      68         15.465
LGA    M      69      M      69         14.893
LGA    K      70      K      70         18.230
LGA    D      71      D      71         17.700
LGA    A      74      A      74         19.381
LGA    V      75      V      75         19.921
LGA    I      76      I      76         14.147
LGA    K      77      K      77         15.872
LGA    S      78      S      78         21.771
LGA    I      79      I      79         19.721
LGA    G      80      G      80         13.774
LGA    V      81      V      81         14.115
LGA    D      82      D      82         19.111
LGA    K      83      K      83         17.758
LGA    F      84      F      84         13.467
LGA    K      85      K      85         17.497
LGA    K      86      K      86         20.327
LGA    V      87      V      87         15.873
LGA    Y      88      Y      88         15.437
LGA    R      89      R      89         21.170
LGA    L      90      L      90         20.025
LGA    L      91      L      91         15.448
LGA    E      92      E      92         19.493
LGA    S      93      S      93         22.785
LGA    I     102      I     102         19.491
LGA    A     103      A     103         23.495
LGA    E     104      E     104         23.351
LGA    F     108      F     108         16.029
LGA    L     109      L     109         14.424
LGA    F     110      F     110         14.525
LGA    S     111      S     111         12.793
LGA    K     112      K     112          8.127
LGA    F     113      F     113          7.554
LGA    D     114      D     114          9.692
LGA    G     119      G     119         12.061
LGA    I     120      I     120         14.112
LGA    F     121      F     121         12.892
LGA    L     122      L     122         10.924
LGA    P     123      P     123         11.563
LGA    F     124      F     124         12.523
LGA    F     125      F     125         10.707
LGA    S     126      S     126          9.432
LGA    K     127      K     127         12.024
LGA    P     128      P     128          9.926
LGA    I     129      I     129          5.291
LGA    M     130      M     130          6.678
LGA    F     131      F     131          9.900
LGA    K     132      K     132          9.239
LGA    M     133      M     133          6.012
LGA    S     134      S     134          9.085
LGA    I     135      I     135         11.880
LGA    R     136      R     136         14.582
LGA    E     137      E     137          9.933
LGA    Q     141      Q     141         13.431
LGA    I     142      I     142         16.441
LGA    E     143      E     143         19.872
LGA    L     144      L     144         20.326
LGA    Y     145      Y     145         21.324
LGA    G     146      G     146         24.291
LGA    T     147      T     147         30.374
LGA    N     148      N     148         30.993
LGA    F     155      F     155         35.458
LGA    V     156      V     156         41.046
LGA    M     157      M     157         43.779
LGA    T     158      T     158         50.448
LGA    D     159      D     159         53.821
LGA    E     160      E     160         54.312
LGA    E     161      E     161         47.291
LGA    V     162      V     162         46.360
LGA    N     163      N     163         51.176
LGA    F     164      F     164         47.586
LGA    Y     165      Y     165         41.690
LGA    A     166      A     166         45.323
LGA    N     167      N     167         47.371
LGA    L     168      L     168         41.134
LGA    K     169      K     169         40.718
LGA    T     170      T     170         35.190
LGA    I     171      I     171         31.880
LGA    E     172      E     172         33.130
LGA    Q     173      Q     173         32.532
LGA    Y     174      Y     174         26.493
LGA    N     175      N     175         24.178
LGA    D     176      D     176         26.212
LGA    Y     177      Y     177         24.819
LGA    V     178      V     178         18.239
LGA    R     179      R     179         17.765
LGA    D     180      D     180         21.651
LGA    L     181      L     181         17.696

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  161    4.0     29    1.83    19.410    16.722     1.503

LGA_LOCAL      RMSD =  1.829  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.221  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 16.502  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.763820 * X  +  -0.563578 * Y  +   0.314576 * Z  + 156.917191
  Y_new =  -0.492951 * X  +   0.824005 * Y  +   0.279312 * Z  +  21.748381
  Z_new =  -0.416626 * X  +   0.058273 * Y  +  -0.907208 * Z  + 159.257645 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.077447   -0.064145  [ DEG:   176.3247     -3.6753 ]
  Theta =   0.429731    2.711862  [ DEG:    24.6218    155.3782 ]
  Phi   =  -2.568475    0.573117  [ DEG:  -147.1628     32.8372 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0287TS383_3                                  
REMARK     2: T0287.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0287TS383_3.T0287.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  161   4.0   29   1.83  16.722    16.50
REMARK  ---------------------------------------------------------- 
MOLECULE T0287TS383_3
PFRMAT TS
TARGET T0287
MODEL 3
PARENT 1ciy_
ATOM      1  CA  LYS     7     110.740  99.322  42.198  1.00  0.00
ATOM      2  CA  LEU     8     113.878  99.764  44.259  1.00  0.00
ATOM      3  CA  PHE     9     113.635 103.555  43.811  1.00  0.00
ATOM      4  CA  SER    10     109.939 103.807  44.788  1.00  0.00
ATOM      5  CA  MET    11     110.574 101.178  47.455  1.00  0.00
ATOM      6  CA  ILE    12     112.694 103.635  49.352  1.00  0.00
ATOM      7  CA  ALA    13     109.860 106.157  49.073  1.00  0.00
ATOM      8  CA  ASP    14     107.176 103.923  50.573  1.00  0.00
ATOM      9  CA  SER    15     109.310 102.740  53.465  1.00  0.00
ATOM     10  CA  LYS    16     109.857 116.296  61.222  1.00  0.00
ATOM     11  CA  ASP    17     107.805 113.833  63.244  1.00  0.00
ATOM     12  CA  LYS    18     109.532 110.627  62.026  1.00  0.00
ATOM     13  CA  LYS    19     112.973 112.246  62.051  1.00  0.00
ATOM     14  CA  GLU    20     112.477 113.589  65.561  1.00  0.00
ATOM     15  CA  LYS    21     111.415 110.048  66.505  1.00  0.00
ATOM     16  CA  LEU    22     114.668 108.608  64.973  1.00  0.00
ATOM     17  CA  ILE    23     116.815 111.065  66.951  1.00  0.00
ATOM     18  CA  GLU    24     114.983 110.590  70.282  1.00  0.00
ATOM     19  CA  SER    25     115.407 106.836  70.061  1.00  0.00
ATOM     20  CA  LEU    26     119.194 107.208  70.389  1.00  0.00
ATOM     21  CA  GLN    27     119.335 110.462  72.401  1.00  0.00
ATOM     22  CA  GLU    28     117.467 108.866  75.282  1.00  0.00
ATOM     23  CA  ASN    29     121.625 110.211  77.274  1.00  0.00
ATOM     24  CA  GLU    30     122.573 112.914  74.850  1.00  0.00
ATOM     25  CA  LEU    31     120.091 115.336  73.460  1.00  0.00
ATOM     26  CA  LEU    32     121.544 117.087  70.430  1.00  0.00
ATOM     27  CA  ASN    33     122.031 120.847  70.882  1.00  0.00
ATOM     28  CA  THR    34     118.890 122.701  69.635  1.00  0.00
ATOM     29  CA  ASP    35     120.282 124.592  66.651  1.00  0.00
ATOM     30  CA  GLU    36     122.099 121.566  65.230  1.00  0.00
ATOM     31  CA  LYS    37     119.125 119.380  66.124  1.00  0.00
ATOM     32  CA  LYS    38     116.724 121.537  64.098  1.00  0.00
ATOM     33  CA  LYS    39     119.097 122.080  61.196  1.00  0.00
ATOM     34  CA  ILE    40     119.472 118.274  60.984  1.00  0.00
ATOM     35  CA  ILE    41     115.732 117.678  60.936  1.00  0.00
ATOM     36  CA  ASP    42     115.292 120.419  58.383  1.00  0.00
ATOM     37  CA  GLN    43     117.823 118.906  55.942  1.00  0.00
ATOM     38  CA  ILE    44     116.013 115.620  56.361  1.00  0.00
ATOM     39  CA  LYS    45     112.756 117.224  55.223  1.00  0.00
ATOM     40  CA  THR    46     114.676 118.795  52.313  1.00  0.00
ATOM     41  CA  MET    47     116.097 115.440  51.213  1.00  0.00
ATOM     42  CA  HIS    48     112.665 113.971  51.642  1.00  0.00
ATOM     43  CA  ASP    49     110.805 116.383  49.299  1.00  0.00
ATOM     44  CA  PHE    50     113.552 116.229  46.653  1.00  0.00
ATOM     45  CA  PHE    51     113.822 112.418  46.561  1.00  0.00
ATOM     46  CA  LYS    52     110.109 112.406  46.091  1.00  0.00
ATOM     47  CA  GLN    53     110.617 114.580  42.992  1.00  0.00
ATOM     48  CA  MET    54     113.454 112.306  41.820  1.00  0.00
ATOM     49  CA  HIS    55     111.554 109.074  42.354  1.00  0.00
ATOM     50  CA  THR    56     108.551 110.238  40.321  1.00  0.00
ATOM     51  CA  ALA    60     110.709 111.410  37.410  1.00  0.00
ATOM     52  CA  LEU    61     112.488 108.044  37.377  1.00  0.00
ATOM     53  CA  ASP    62     109.199 106.194  37.363  1.00  0.00
ATOM     54  CA  LYS    63     108.077 108.209  34.343  1.00  0.00
ATOM     55  CA  VAL    64     111.416 107.945  32.537  1.00  0.00
ATOM     56  CA  LEU    65     111.706 104.173  32.873  1.00  0.00
ATOM     57  CA  ARG    66     108.318 104.040  31.120  1.00  0.00
ATOM     58  CA  ASN    67     109.363 106.193  28.116  1.00  0.00
ATOM     59  CA  TYR    68     111.332 106.752  32.483  1.00  0.00
ATOM     60  CA  MET    69     111.067 103.001  33.207  1.00  0.00
ATOM     61  CA  LYS    70     113.206 105.983  28.385  1.00  0.00
ATOM     62  CA  ASP    71     113.675 107.428  24.928  1.00  0.00
ATOM     63  CA  TYR    72     113.675 107.428  24.928  1.00  0.00
ATOM     64  CA  ARG    73     111.644 110.615  25.441  1.00  0.00
ATOM     65  CA  ALA    74     114.499 113.200  25.463  1.00  0.00
ATOM     66  CA  VAL    75     112.445 115.327  27.806  1.00  0.00
ATOM     67  CA  ILE    76     112.193 112.634  30.458  1.00  0.00
ATOM     68  CA  LYS    77     115.864 111.896  29.900  1.00  0.00
ATOM     69  CA  SER    78     116.859 115.503  30.545  1.00  0.00
ATOM     70  CA  ILE    79     114.632 115.747  33.590  1.00  0.00
ATOM     71  CA  GLY    80     116.374 112.762  35.187  1.00  0.00
ATOM     72  CA  VAL    81     119.773 114.417  34.631  1.00  0.00
ATOM     73  CA  ASP    82     118.339 117.603  36.187  1.00  0.00
ATOM     74  CA  LYS    83     116.782 115.860  39.185  1.00  0.00
ATOM     75  CA  PHE    84     119.752 113.540  39.660  1.00  0.00
ATOM     76  CA  LYS    85     122.214 116.402  39.996  1.00  0.00
ATOM     77  CA  LYS    86     120.087 118.218  42.550  1.00  0.00
ATOM     78  CA  VAL    87     119.564 114.974  44.513  1.00  0.00
ATOM     79  CA  TYR    88     123.230 114.276  44.503  1.00  0.00
ATOM     80  CA  ARG    89     124.295 117.758  45.571  1.00  0.00
ATOM     81  CA  LEU    90     121.638 117.910  48.311  1.00  0.00
ATOM     82  CA  LEU    91     123.082 114.641  49.732  1.00  0.00
ATOM     83  CA  GLU    92     126.619 115.875  49.532  1.00  0.00
ATOM     84  CA  SER    93     125.591 118.876  51.644  1.00  0.00
ATOM     85  CA  GLU    97     121.638 117.910  48.311  1.00  0.00
ATOM     86  CA  LEU    98     123.082 114.641  49.732  1.00  0.00
ATOM     87  CA  LEU    99     126.619 115.875  49.532  1.00  0.00
ATOM     88  CA  HIS   100     125.591 118.876  51.644  1.00  0.00
ATOM     89  CA  ALA   101     123.089 117.421  54.081  1.00  0.00
ATOM     90  CA  ILE   102     125.439 114.609  55.133  1.00  0.00
ATOM     91  CA  ALA   103     128.116 116.511  57.020  1.00  0.00
ATOM     92  CA  GLU   104     125.284 118.236  58.909  1.00  0.00
ATOM     93  CA  PHE   108     124.316 114.777  60.159  1.00  0.00
ATOM     94  CA  LEU   109     127.810 114.294  61.537  1.00  0.00
ATOM     95  CA  PHE   110     128.041 117.449  63.657  1.00  0.00
ATOM     96  CA  SER   111     130.982 117.613  66.084  1.00  0.00
ATOM     97  CA  LYS   112     130.158 116.097  69.510  1.00  0.00
ATOM     98  CA  PHE   113     126.768 114.850  68.345  1.00  0.00
ATOM     99  CA  ASP   114     128.005 112.156  66.018  1.00  0.00
ATOM    100  CA  GLY   119     126.476 109.283  67.998  1.00  0.00
ATOM    101  CA  ILE   120     122.789 110.391  68.398  1.00  0.00
ATOM    102  CA  PHE   121     122.663 111.567  64.740  1.00  0.00
ATOM    103  CA  LEU   122     123.986 108.148  63.682  1.00  0.00
ATOM    104  CA  PRO   123     120.767 106.430  62.535  1.00  0.00
ATOM    105  CA  PHE   124     119.849 109.524  60.570  1.00  0.00
ATOM    106  CA  PHE   125     123.324 109.619  58.954  1.00  0.00
ATOM    107  CA  SER   126     122.954 105.941  57.965  1.00  0.00
ATOM    108  CA  LYS   127     119.597 106.690  56.306  1.00  0.00
ATOM    109  CA  PRO   128     121.023 109.520  54.197  1.00  0.00
ATOM    110  CA  ILE   129     124.220 107.598  53.338  1.00  0.00
ATOM    111  CA  MET   130     122.013 104.689  52.237  1.00  0.00
ATOM    112  CA  PHE   131     120.033 107.066  50.003  1.00  0.00
ATOM    113  CA  LYS   132     123.237 108.553  48.525  1.00  0.00
ATOM    114  CA  MET   133     124.820 105.167  47.581  1.00  0.00
ATOM    115  CA  SER   134     121.468 104.300  46.103  1.00  0.00
ATOM    116  CA  ILE   135     121.441 107.356  43.795  1.00  0.00
ATOM    117  CA  ARG   136     125.116 107.046  42.892  1.00  0.00
ATOM    118  CA  GLU   137     124.290 103.468  42.048  1.00  0.00
ATOM    119  CA  GLN   141     121.473 104.864  39.950  1.00  0.00
ATOM    120  CA  ILE   142     123.536 106.915  37.508  1.00  0.00
ATOM    121  CA  GLU   143     126.149 104.183  37.412  1.00  0.00
ATOM    122  CA  LEU   144     123.496 101.930  35.884  1.00  0.00
ATOM    123  CA  TYR   145     121.106 104.131  33.910  1.00  0.00
ATOM    124  CA  GLY   146     123.312 107.170  33.366  1.00  0.00
ATOM    125  CA  THR   147     124.039 106.397  29.725  1.00  0.00
ATOM    126  CA  ASN   148     120.331 105.869  29.042  1.00  0.00
ATOM    127  CA  PHE   155     119.655 109.265  30.665  1.00  0.00
ATOM    128  CA  VAL   156     122.171 110.917  28.390  1.00  0.00
ATOM    129  CA  MET   157     125.294 111.189  30.526  1.00  0.00
ATOM    130  CA  THR   158     128.792 110.992  29.105  1.00  0.00
ATOM    131  CA  ASP   159     130.947 108.011  29.977  1.00  0.00
ATOM    132  CA  GLU   160     133.350 110.329  31.774  1.00  0.00
ATOM    133  CA  GLU   161     130.823 111.531  34.372  1.00  0.00
ATOM    134  CA  VAL   162     129.258 108.115  34.736  1.00  0.00
ATOM    135  CA  ASN   163     132.727 106.837  35.414  1.00  0.00
ATOM    136  CA  PHE   164     133.392 109.469  38.059  1.00  0.00
ATOM    137  CA  TYR   165     130.044 108.724  39.737  1.00  0.00
ATOM    138  CA  ALA   166     130.894 105.041  39.964  1.00  0.00
ATOM    139  CA  ASN   167     134.213 106.077  41.453  1.00  0.00
ATOM    140  CA  LEU   168     133.067 103.103  45.406  1.00  0.00
ATOM    141  CA  LYS   169     134.923 105.516  47.654  1.00  0.00
ATOM    142  CA  THR   170     131.785 106.247  49.700  1.00  0.00
ATOM    143  CA  ILE   171     130.484 102.680  50.116  1.00  0.00
ATOM    144  CA  GLU   172     133.661 102.416  52.129  1.00  0.00
ATOM    145  CA  GLN   173     133.746 105.842  53.774  1.00  0.00
ATOM    146  CA  TYR   174     130.192 105.524  54.987  1.00  0.00
ATOM    147  CA  ASN   175     130.729 101.988  56.279  1.00  0.00
ATOM    148  CA  ASP   176     133.781 103.027  58.264  1.00  0.00
ATOM    149  CA  TYR   177     132.143 106.106  59.771  1.00  0.00
ATOM    150  CA  VAL   178     129.088 104.217  60.993  1.00  0.00
ATOM    151  CA  ARG   179     131.183 101.418  62.614  1.00  0.00
ATOM    152  CA  ASP   180     133.589 103.895  64.260  1.00  0.00
ATOM    153  CA  LEU   181     130.776 105.828  65.895  1.00  0.00
ATOM    154  CA  LEU   182     128.729 102.793  66.809  1.00  0.00
ATOM    155  CA  MET   183     131.832 101.452  68.589  1.00  0.00
ATOM    156  CA  LYS   184     132.355 104.728  70.380  1.00  0.00
ATOM    157  CA  PHE   185     128.883 105.113  71.817  1.00  0.00
ATOM    158  CA  ASP   186     128.883 105.113  71.817  1.00  0.00
ATOM    159  CA  LEU   187     128.903 101.441  72.759  1.00  0.00
ATOM    160  CA  GLU   188     131.929 101.932  74.926  1.00  0.00
ATOM    161  CA  LYS   189     130.610 105.187  76.336  1.00  0.00
TER
END
