
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  176 (  176),  selected  150 , name T0287TS383_5
# Molecule2: number of CA atoms  161 ( 1345),  selected  150 , name T0287.pdb
# PARAMETERS: T0287TS383_5.T0287.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        61 - 96          4.99    25.65
  LCS_AVERAGE:     15.59

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        33 - 49          1.96    28.92
  LCS_AVERAGE:      6.19

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        35 - 49          0.73    28.68
  LCS_AVERAGE:      4.89

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  161
LCS_GDT     K      21     K      21      3    8   10     3    3    3    4    4    8   11   12   12   13   14   18   20   21   22   23   24   29   29   35 
LCS_GDT     L      22     L      22      7    8   12     4    6    7    7    8    9   11   12   12   14   14   18   20   21   22   23   24   24   37   40 
LCS_GDT     I      23     I      23      7    8   12     4    6    7    7    8    9   11   12   12   15   17   18   20   21   27   33   37   38   42   44 
LCS_GDT     E      24     E      24      7    8   12     4    6    7    7    8    9   11   12   16   20   26   29   33   36   37   40   41   42   43   45 
LCS_GDT     S      25     S      25      7    8   12     4    6    7    7    8    9   11   15   22   25   29   32   36   38   41   41   41   42   43   45 
LCS_GDT     L      26     L      26      7    8   12     4    6    7    8    8    9   11   12   12   15   19   26   28   31   33   36   40   41   43   44 
LCS_GDT     Q      27     Q      27      7    8   12     4    6    7    7    8    9   11   12   12   15   17   18   20   24   29   31   34   37   40   42 
LCS_GDT     E      28     E      28      7    8   23     3    6    7    7    8    9   11   12   12   15   17   18   20   21   22   23   25   36   37   42 
LCS_GDT     N      29     N      29      3    4   26     0    3    3    4    4    4    4   14   14   17   26   28   33   38   41   41   41   42   43   45 
LCS_GDT     E      30     E      30      3    4   26     0    3    3    4    5    8   17   19   25   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     L      31     L      31      4    6   26     3    3    4    6    9   12   15   19   20   25   29   32   34   37   41   41   41   42   43   45 
LCS_GDT     L      32     L      32      4    6   26     3    3    4    6    8   12   16   19   25   28   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     N      33     N      33      4   17   26     3    3    4    6   10   14   20   28   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     T      34     T      34      4   17   26     3    3    7    8   16   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     D      35     D      35     15   17   26     5   12   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     E      36     E      36     15   17   26     5   10   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     K      37     K      37     15   17   26     5   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     K      38     K      38     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     K      39     K      39     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     I      40     I      40     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     I      41     I      41     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     D      42     D      42     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     Q      43     Q      43     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   49 
LCS_GDT     I      44     I      44     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   46   49 
LCS_GDT     K      45     K      45     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   43   47   47   49 
LCS_GDT     T      46     T      46     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   43   47   47   49 
LCS_GDT     M      47     M      47     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   43   47   47   49 
LCS_GDT     H      48     H      48     15   17   26    12   13   15   18   20   24   27   29   31   32   33   34   36   38   41   42   45   47   47   49 
LCS_GDT     D      49     D      49     15   17   26    12   13   16   18   20   24   27   29   31   32   33   34   36   38   41   44   45   47   48   49 
LCS_GDT     F      50     F      50      7   16   26     6    6    7    7   10   14   18   26   31   32   33   34   36   38   41   44   45   47   48   49 
LCS_GDT     F      51     F      51      7    8   26     6    6    7    7    8    9   13   19   27   31   32   33   36   38   41   44   45   47   48   49 
LCS_GDT     K      52     K      52      7    8   26     6    6    7    7    8   11   20   26   30   32   33   33   36   37   41   44   45   47   48   49 
LCS_GDT     Q      53     Q      53      7    8   26     6    6    7    8   11   21   24   28   31   32   33   34   36   38   41   44   45   47   48   49 
LCS_GDT     M      54     M      54      7    8   26     6    6    7    7    8    9   13   14   16   20   24   29   34   37   41   41   41   44   48   49 
LCS_GDT     H      55     H      55      7   16   26     3    4    7    7    8    9   14   15   17   20   24   27   34   35   35   40   41   41   43   45 
LCS_GDT     T      56     T      56     14   16   26     3    5   13   15   16   17   17   18   19   21   25   29   31   33   37   41   43   47   48   49 
LCS_GDT     N      57     N      57     14   16   26    11   12   14   15   16   17   17   18   19   21   25   29   31   33   38   41   45   47   48   49 
LCS_GDT     K      58     K      58     14   16   26    11   12   14   15   16   17   17   18   19   21   25   29   32   35   39   44   45   47   48   49 
LCS_GDT     G      59     G      59     14   16   32    11   12   14   15   16   17   17   18   19   23   27   31   34   37   41   44   45   47   48   49 
LCS_GDT     A      60     A      60     14   16   33    11   12   14   15   16   17   17   18   21   24   27   31   34   37   41   44   45   47   48   49 
LCS_GDT     L      61     L      61     14   16   36    11   12   14   15   16   17   17   18   21   25   28   31   34   37   41   44   45   47   48   49 
LCS_GDT     D      62     D      62     14   16   36    11   12   14   15   16   17   17   18   21   25   28   31   34   37   41   44   45   47   48   49 
LCS_GDT     K      63     K      63     14   16   36    11   12   14   15   16   17   17   19   22   25   29   33   36   37   41   44   45   47   48   49 
LCS_GDT     V      64     V      64     14   16   36    11   12   14   15   16   17   17   20   24   28   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     L      65     L      65     14   16   36    11   12   14   15   16   17   18   23   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     R      66     R      66     14   16   36    11   12   14   15   16   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     N      67     N      67     14   16   36    11   12   14   15   16   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     Y      68     Y      68     14   16   36    10   12   14   15   16   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     M      69     M      69     14   16   36     3   12   14   15   16   17   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     K      70     K      70      4   16   36     3    4    6    9   11   17   17   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     D      71     D      71      4    5   36     3    4    9   11   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     Y      72     Y      72      4    5   36     3    4    5    9   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     R      73     R      73      4    5   36     4    4    4   10   14   18   19   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     A      74     A      74      4    5   36     4    4    4    5    8   13   19   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     V      75     V      75      4    5   36     4    4    4    5    5    6    7    8    9   11   16   23   29   33   37   41   45   47   48   49 
LCS_GDT     I      76     I      76      4    5   36     4    4    4    5    5    6    7    8   12   16   24   30   33   34   38   42   43   47   47   49 
LCS_GDT     K      77     K      77      3    5   36     0    3    3    5    5    9   20   24   27   29   31   33   36   37   40   44   45   47   48   49 
LCS_GDT     S      78     S      78      0    3   36     0    0    3    4    6   12   14   18   22   25   30   33   36   37   41   44   45   47   48   49 
LCS_GDT     I      79     I      79      0   13   36     1    1    3    6    8   11   17   20   24   28   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     G      80     G      80     12   13   36     6   10   12   12   12   15   18   23   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     V      81     V      81     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     D      82     D      82     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     K      83     K      83     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     F      84     F      84     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     K      85     K      85     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     K      86     K      86     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     V      87     V      87     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     Y      88     Y      88     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     R      89     R      89     12   13   36     8   11   12   12   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     L      90     L      90     12   13   36     8   11   12   12   13   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     L      91     L      91     12   13   36     8   11   12   12   13   15   20   23   27   29   32   34   36   38   41   44   45   47   48   49 
LCS_GDT     E      92     E      92     13   13   36    13   13   13   14   18   24   27   29   31   32   33   34   36   38   41   44   45   47   48   49 
LCS_GDT     S      93     S      93     13   13   36    13   13   14   15   16   24   27   29   31   32   33   34   36   38   41   44   45   47   48   49 
LCS_GDT     E      94     E      94     13   13   36    13   13   14   15   16   17   24   29   30   32   33   34   36   38   41   44   45   47   48   49 
LCS_GDT     T      95     T      95     13   13   36    13   13   13   14   15   19   27   29   31   32   33   34   36   38   41   44   45   47   48   49 
LCS_GDT     M      96     M      96     13   13   36    13   13   16   18   20   24   27   29   31   32   33   34   36   38   41   42   45   47   48   49 
LCS_GDT     E      97     E      97     13   13   17    13   13   13   18   19   24   27   29   31   32   33   34   36   38   41   41   41   45   47   49 
LCS_GDT     L      98     L      98     13   13   16    13   13   13   14   15   24   27   29   31   32   33   34   36   38   41   41   41   45   46   49 
LCS_GDT     L      99     L      99     13   13   16    13   13   15   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     H     100     H     100     13   13   16    13   13   13   17   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     A     101     A     101     13   13   16    13   13   16   18   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     I     102     I     102     13   13   16    13   13   15   17   20   24   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     A     103     A     103     13   13   19    13   13   13   14   16   20   26   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     E     104     E     104     13   13   19    13   13   13   14   15   22   27   29   31   32   33   34   36   38   41   41   41   42   43   45 
LCS_GDT     N     105     N     105      3    3   19     0    3    4    4    7    8   10   11   12   14   15   16   17   19   27   31   41   41   43   45 
LCS_GDT     P     106     P     106      3    5   19     0    3    3    4    4    5    7    8   11   14   15   16   17   19   20   20   23   30   33   38 
LCS_GDT     N     107     N     107      4    5   19     4    4    4    4    7    8   10   11   12   14   15   16   17   19   20   21   26   27   29   33 
LCS_GDT     F     108     F     108      4    5   19     4    4    4    4    5    6    9   11   12   12   15   16   17   19   22   24   26   27   29   32 
LCS_GDT     L     109     L     109      4    5   19     4    4    4    4    5    6    9   11   12   14   15   16   17   20   22   24   26   27   29   33 
LCS_GDT     F     110     F     110      4    6   19     4    4    4    4    7    8   10   11   12   14   15   16   17   20   22   24   26   27   29   32 
LCS_GDT     S     111     S     111      5    6   19     4    4    5    5    6    6    6    8   10   12   15   16   17   19   20   24   26   27   32   33 
LCS_GDT     K     112     K     112      5    6   19     4    4    5    5    7    8   10   11   12   14   15   16   17   20   22   24   26   28   32   33 
LCS_GDT     F     113     F     113      5    6   19     4    4    5    5    7    8   10   11   12   14   15   16   17   20   22   24   26   28   32   33 
LCS_GDT     D     114     D     114      5    6   19     4    4    5    5    7    8   10   11   12   14   15   16   17   20   22   24   26   27   29   32 
LCS_GDT     R     115     R     115      5    6   19     4    4    5    5    7    8   10   11   12   14   15   16   17   20   22   24   26   28   32   33 
LCS_GDT     S     116     S     116      6    7   19     4    4    6    6    6    7   10   11   12   14   15   16   18   20   24   24   26   28   32   33 
LCS_GDT     I     117     I     117      6    7   19     4    4    6    6    6    8   10   11   12   14   15   16   17   20   22   24   26   27   29   32 
LCS_GDT     L     118     L     118      6    7   19     4    4    6    6    6    7   10   11   12   14   15   16   18   22   27   28   30   32   33   36 
LCS_GDT     G     119     G     119      6    7   19     4    4    6    6    6    6    7    9   10   12   15   16   18   22   27   28   30   32   33   36 
LCS_GDT     I     120     I     120      6    7   19     4    4    6    6    6    6    7    9   10   14   15   16   17   19   22   24   26   30   32   36 
LCS_GDT     F     121     F     121      6    7   19     4    4    6    6    6    6   12   15   17   18   19   19   21   24   27   28   30   32   33   36 
LCS_GDT     F     125     F     125      0    7   19     0    1    2    3    3    9    9   13   16   18   19   19   20   24   27   28   30   32   33   35 
LCS_GDT     S     126     S     126      0    3   19     0    0    2    3    7    9   12   13   16   18   19   19   20   24   27   28   30   32   33   35 
LCS_GDT     K     132     K     132      3    4   15     3    3    3    3    3    4    7    7    8   10   11   14   16   19   23   24   28   32   39   42 
LCS_GDT     M     133     M     133      3    5   15     3    3    3    4    5    5    7    9   10   11   12   13   16   18   23   23   26   30   31   47 
LCS_GDT     S     134     S     134      4    5   15     4    4    4    4    5   10   11   11   11   15   17   18   20   31   32   35   40   43   45   47 
LCS_GDT     I     135     I     135      4    5   15     4    4    4    4    5   10   11   11   12   15   17   18   18   22   23   25   28   39   43   49 
LCS_GDT     R     136     R     136      4    5   15     4    4    4    4    6   10   19   23   27   29   31   33   36   36   41   44   45   47   48   49 
LCS_GDT     E     137     E     137      4    8   15     4    4    4    6   14   18   20   24   27   29   31   33   36   37   41   44   45   47   48   49 
LCS_GDT     M     138     M     138      7    8   15     7    7    7    8    8   10   11   15   23   29   30   33   36   36   41   44   45   47   48   49 
LCS_GDT     D     139     D     139      7    8   15     7    7    7    8    8   10   11   13   15   17   20   24   30   31   36   40   43   47   47   49 
LCS_GDT     S     140     S     140      7    8   15     7    7    7    8    8   10   13   14   15   17   20   24   30   32   36   40   43   47   47   49 
LCS_GDT     Q     141     Q     141      7    8   15     7    7    7    8    8   10   13   14   16   20   25   28   30   34   38   42   43   47   47   49 
LCS_GDT     I     142     I     142      7    8   15     7    7    7    8    8   10   13   14   15   17   20   21   22   26   28   37   41   47   47   49 
LCS_GDT     E     143     E     143      7    8   15     7    7    7    8    8   10   13   14   15   17   20   21   22   23   26   28   31   37   46   49 
LCS_GDT     L     144     L     144      7    8   15     7    7    7    8    8    9   13   14   15   17   20   21   22   26   28   30   35   40   46   49 
LCS_GDT     Y     145     Y     145      5    8   14     4    5    5    7    8    8    9   10   12   15   17   19   22   24   26   30   36   41   46   49 
LCS_GDT     G     146     G     146      5    8   14     4    5    5    7    8    8    9   10   12   15   17   19   22   26   30   34   41   45   47   49 
LCS_GDT     T     147     T     147      5    8   14     4    5    5    7    8    8    9    9   12   15   17   20   22   26   30   37   41   45   47   49 
LCS_GDT     N     148     N     148      5    8   14     4    5    5    7    8    8    9   10   12   15   17   19   22   26   28   33   35   40   46   49 
LCS_GDT     L     149     L     149      5    8   14     3    5    5    7    8    8    9   10   12   15   17   18   20   23   26   30   34   38   40   44 
LCS_GDT     L     151     L     151      4    8   14     3    3    5    7    8    8    9    9    9   10   14   15   18   22   26   28   32   36   40   44 
LCS_GDT     L     152     L     152      3    8   15     3    3    5    7    8    8    9   13   14   16   18   19   20   26   28   30   34   38   40   44 
LCS_GDT     K     153     K     153      3    8   27     3    3    4    5    8    8    9   13   14   16   18   19   21   23   27   30   32   36   39   42 
LCS_GDT     L     154     L     154      3    3   27     3    3    3    5    6    7    9   13   14   16   18   19   21   24   27   30   32   36   39   42 
LCS_GDT     M     157     M     157      3    5   27     0    3    4    4    6    8   11   15   18   21   22   23   25   27   28   30   34   36   39   42 
LCS_GDT     T     158     T     158      3    5   27     0    3    4    4    6    8   11   14   14   19   22   23   25   27   28   30   32   36   39   42 
LCS_GDT     D     159     D     159      3    6   27     3    3    4    4    6    9   11   14   17   19   22   23   25   27   28   30   32   36   39   42 
LCS_GDT     E     160     E     160      3    6   27     3    3    4    4    5    7    9   11   12   14   19   22   24   25   27   30   32   36   39   42 
LCS_GDT     E     161     E     161      3    6   27     3    3    4    4    5    6    9   11   15   17   18   23   24   25   27   30   32   36   39   42 
LCS_GDT     V     162     V     162      3    6   27     3    3    4    4   11   12   14   16   19   21   22   23   25   27   28   30   32   36   39   42 
LCS_GDT     N     163     N     163      4    7   27     4    4    4    6    8   10   13   15   19   21   22   23   24   25   27   28   30   32   36   38 
LCS_GDT     F     164     F     164      4    7   27     4    4    4    7   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     Y     165     Y     165      5    7   27     5    5    6    9   10   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     A     166     A     166      5    7   27     5    5    5    7   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     N     167     N     167      5    7   27     5    5    6    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     L     168     L     168      5    8   27     5    5    6    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     K     169     K     169      5    8   27     5    5    6    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     T     170     T     170      3    8   27     3    3    6    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     I     171     I     171      3    8   27     0    3    5    5    7   11   14   14   17   21   22   23   24   25   26   27   30   32   33   35 
LCS_GDT     E     172     E     172      4    8   27     4    4    5    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     Q     173     Q     173      4    8   27     4    4    6    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     Y     174     Y     174      4    8   27     4    4    5    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     N     175     N     175      4    8   27     4    4    5    9   11   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     D     176     D     176      6    7   27     5    6    6    6    8   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     Y     177     Y     177      6    7   27     5    6    6    6    8   11   14   15   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     V     178     V     178      6    7   27     5    6    6    6    8   12   14   16   19   21   22   23   24   25   27   28   30   32   33   35 
LCS_GDT     R     179     R     179      6    7   27     5    6    6    6    8   11   14   16   19   21   22   23   24   25   26   28   30   32   33   35 
LCS_GDT     D     180     D     180      6    7   27     5    6    6    6    8   11   14   16   19   21   22   23   24   25   26   27   29   30   32   35 
LCS_GDT     L     181     L     181      6    7   27     3    6    6    6    8   11   14   16   19   21   22   23   24   25   27   28   30   32   36   37 
LCS_AVERAGE  LCS_A:   8.89  (   4.89    6.19   15.59 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     13     16     18     20     24     27     29     31     32     33     34     36     38     41     44     45     47     48     49 
GDT PERCENT_CA   8.07   8.07   9.94  11.18  12.42  14.91  16.77  18.01  19.25  19.88  20.50  21.12  22.36  23.60  25.47  27.33  27.95  29.19  29.81  30.43
GDT RMS_LOCAL    0.33   0.33   0.97   1.16   1.37   1.91   2.18   2.39   2.76   2.77   2.97   3.41   4.11   4.18   4.61   5.33   5.54   5.74   5.87   5.98
GDT RMS_ALL_CA  28.96  28.96  27.64  27.90  28.08  27.77  27.72  27.80  27.93  27.87  27.85  27.96  26.11  28.11  28.23  26.40  26.28  26.33  26.41  26.43

#      Molecule1      Molecule2       DISTANCE
LGA    K      21      K      21         26.437
LGA    L      22      L      22         22.135
LGA    I      23      I      23         24.062
LGA    E      24      E      24         19.232
LGA    S      25      S      25         13.686
LGA    L      26      L      26         17.871
LGA    Q      27      Q      27         20.067
LGA    E      28      E      28         15.256
LGA    N      29      N      29         11.821
LGA    E      30      E      30         11.002
LGA    L      31      L      31         12.667
LGA    L      32      L      32          9.853
LGA    N      33      N      33          7.291
LGA    T      34      T      34          2.746
LGA    D      35      D      35          2.055
LGA    E      36      E      36          2.531
LGA    K      37      K      37          2.681
LGA    K      38      K      38          2.006
LGA    K      39      K      39          1.771
LGA    I      40      I      40          1.090
LGA    I      41      I      41          0.664
LGA    D      42      D      42          0.511
LGA    Q      43      Q      43          1.447
LGA    I      44      I      44          2.051
LGA    K      45      K      45          1.915
LGA    T      46      T      46          1.632
LGA    M      47      M      47          3.164
LGA    H      48      H      48          3.968
LGA    D      49      D      49          3.330
LGA    F      50      F      50          4.852
LGA    F      51      F      51          8.009
LGA    K      52      K      52          5.302
LGA    Q      53      Q      53          4.050
LGA    M      54      M      54         10.655
LGA    H      55      H      55         12.501
LGA    T      56      T      56         13.382
LGA    N      57      N      57         16.781
LGA    K      58      K      58         21.707
LGA    G      59      G      59         24.655
LGA    A      60      A      60         22.560
LGA    L      61      L      61         23.188
LGA    D      62      D      62         28.757
LGA    K      63      K      63         29.994
LGA    V      64      V      64         28.562
LGA    L      65      L      65         30.673
LGA    R      66      R      66         35.551
LGA    N      67      N      67         36.128
LGA    Y      68      Y      68         34.008
LGA    M      69      M      69         36.551
LGA    K      70      K      70         42.628
LGA    D      71      D      71         46.599
LGA    Y      72      Y      72         44.923
LGA    R      73      R      73         51.893
LGA    A      74      A      74         52.062
LGA    V      75      V      75         51.789
LGA    I      76      I      76         51.399
LGA    K      77      K      77         53.404
LGA    S      78      S      78         43.900
LGA    I      79      I      79         39.716
LGA    G      80      G      80         37.422
LGA    V      81      V      81         33.095
LGA    D      82      D      82         33.663
LGA    K      83      K      83         29.592
LGA    F      84      F      84         24.556
LGA    K      85      K      85         23.795
LGA    K      86      K      86         23.292
LGA    V      87      V      87         17.131
LGA    Y      88      Y      88         14.315
LGA    R      89      R      89         17.433
LGA    L      90      L      90         13.939
LGA    L      91      L      91          8.213
LGA    E      92      E      92          2.198
LGA    S      93      S      93          2.567
LGA    E      94      E      94          3.949
LGA    T      95      T      95          3.239
LGA    M      96      M      96          0.624
LGA    E      97      E      97          1.613
LGA    L      98      L      98          2.578
LGA    L      99      L      99          2.893
LGA    H     100      H     100          2.226
LGA    A     101      A     101          1.170
LGA    I     102      I     102          2.733
LGA    A     103      A     103          3.878
LGA    E     104      E     104          3.110
LGA    N     105      N     105         12.975
LGA    P     106      P     106         14.004
LGA    N     107      N     107         13.327
LGA    F     108      F     108         16.708
LGA    L     109      L     109         23.066
LGA    F     110      F     110         21.453
LGA    S     111      S     111         25.026
LGA    K     112      K     112         31.465
LGA    F     113      F     113         32.905
LGA    D     114      D     114         32.303
LGA    R     115      R     115         36.642
LGA    S     116      S     116         35.663
LGA    I     117      I     117         34.501
LGA    L     118      L     118         33.339
LGA    G     119      G     119         37.086
LGA    I     120      I     120         39.352
LGA    F     121      F     121         38.166
LGA    F     125      F     125         40.690
LGA    S     126      S     126         45.978
LGA    K     132      K     132         52.278
LGA    M     133      M     133         47.820
LGA    S     134      S     134         46.818
LGA    I     135      I     135         49.162
LGA    R     136      R     136         46.178
LGA    E     137      E     137         39.948
LGA    M     138      M     138         36.784
LGA    D     139      D     139         40.833
LGA    S     140      S     140         40.392
LGA    Q     141      Q     141         33.590
LGA    I     142      I     142         32.627
LGA    E     143      E     143         37.768
LGA    L     144      L     144         36.149
LGA    Y     145      Y     145         32.654
LGA    G     146      G     146         30.268
LGA    T     147      T     147         28.723
LGA    N     148      N     148         29.964
LGA    L     149      L     149         27.160
LGA    L     151      L     151         24.918
LGA    L     152      L     152         24.400
LGA    K     153      K     153         24.288
LGA    L     154      L     154         22.582
LGA    M     157      M     157         19.408
LGA    T     158      T     158         24.091
LGA    D     159      D     159         26.021
LGA    E     160      E     160         31.973
LGA    E     161      E     161         29.688
LGA    V     162      V     162         23.029
LGA    N     163      N     163         25.457
LGA    F     164      F     164         26.709
LGA    Y     165      Y     165         24.467
LGA    A     166      A     166         27.708
LGA    N     167      N     167         33.761
LGA    L     168      L     168         32.656
LGA    K     169      K     169         37.915
LGA    T     170      T     170         39.353
LGA    I     171      I     171         35.605
LGA    E     172      E     172         41.327
LGA    Q     173      Q     173         36.359
LGA    Y     174      Y     174         32.108
LGA    N     175      N     175         34.970
LGA    D     176      D     176         30.827
LGA    Y     177      Y     177         24.480
LGA    V     178      V     178         22.400
LGA    R     179      R     179         26.989
LGA    D     180      D     180         24.266
LGA    L     181      L     181         19.171

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  176  161    4.0     29    2.39    16.149    13.797     1.163

LGA_LOCAL      RMSD =  2.394  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 27.872  Number of atoms =  150 
Std_ALL_ATOMS  RMSD = 20.945  (standard rmsd on all 150 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.014553 * X  +   0.140989 * Y  +   0.989904 * Z  +  -7.391219
  Y_new =  -0.890754 * X  +   0.447934 * Y  +  -0.076893 * Z  + 154.420853
  Z_new =  -0.454253 * X  +  -0.882880 * Y  +   0.119068 * Z  +  92.193214 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.436742    1.704850  [ DEG:   -82.3193     97.6807 ]
  Theta =   0.471533    2.670060  [ DEG:    27.0169    152.9832 ]
  Phi   =  -1.587133    1.554460  [ DEG:   -90.9360     89.0640 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0287TS383_5                                  
REMARK     2: T0287.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0287TS383_5.T0287.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  176  161   4.0   29   2.39  13.797    20.95
REMARK  ---------------------------------------------------------- 
MOLECULE T0287TS383_5
PFRMAT TS
TARGET T0287
MODEL 5
PARENT 1mkdA
ATOM      1  CA  ARG     6     116.429 136.892  63.074  1.00  0.00
ATOM      2  CA  LYS     7     116.691 133.202  63.901  1.00  0.00
ATOM      3  CA  LEU     8     114.663 132.461  60.763  1.00  0.00
ATOM      4  CA  PHE     9     116.959 134.676  58.701  1.00  0.00
ATOM      5  CA  SER    10     119.999 132.792  60.015  1.00  0.00
ATOM      6  CA  MET    11     118.520 129.325  59.516  1.00  0.00
ATOM      7  CA  ILE    12     117.211 130.096  56.019  1.00  0.00
ATOM      8  CA  ALA    13     120.583 131.507  54.913  1.00  0.00
ATOM      9  CA  ASP    14     122.673 128.742  56.470  1.00  0.00
ATOM     10  CA  SER    15     130.655 126.374  61.282  1.00  0.00
ATOM     11  CA  LYS    16     128.996 125.329  58.045  1.00  0.00
ATOM     12  CA  ASP    17     134.465 128.917  60.037  1.00  0.00
ATOM     13  CA  LYS    18     132.817 126.200  62.134  1.00  0.00
ATOM     14  CA  LYS    19     129.926 126.109  59.659  1.00  0.00
ATOM     15  CA  GLU    20     132.171 123.600  57.888  1.00  0.00
ATOM     16  CA  LYS    21     132.383 121.450  61.000  1.00  0.00
ATOM     17  CA  LEU    22     128.594 121.548  61.311  1.00  0.00
ATOM     18  CA  ILE    23     128.207 120.422  57.704  1.00  0.00
ATOM     19  CA  GLU    24     130.753 117.709  58.412  1.00  0.00
ATOM     20  CA  SER    25     128.801 116.502  61.418  1.00  0.00
ATOM     21  CA  LEU    26     125.579 116.397  59.444  1.00  0.00
ATOM     22  CA  GLN    27     127.297 113.936  57.125  1.00  0.00
ATOM     23  CA  GLU    28     126.500 111.222  59.656  1.00  0.00
ATOM     24  CA  ASN    29     123.166 121.610  68.791  1.00  0.00
ATOM     25  CA  GLU    30     126.008 124.029  69.582  1.00  0.00
ATOM     26  CA  LEU    31     127.421 124.429  66.089  1.00  0.00
ATOM     27  CA  LEU    32     123.920 125.457  64.989  1.00  0.00
ATOM     28  CA  ASN    33     123.324 128.059  67.669  1.00  0.00
ATOM     29  CA  THR    34     120.767 125.783  69.318  1.00  0.00
ATOM     30  CA  ASP    35     118.898 124.805  66.169  1.00  0.00
ATOM     31  CA  GLU    36     119.508 121.037  65.984  1.00  0.00
ATOM     32  CA  LYS    37     115.879 120.306  65.163  1.00  0.00
ATOM     33  CA  LYS    38     115.659 122.811  62.300  1.00  0.00
ATOM     34  CA  LYS    39     119.046 121.811  60.938  1.00  0.00
ATOM     35  CA  ILE    40     118.564 118.040  61.191  1.00  0.00
ATOM     36  CA  ILE    41     114.952 118.111  59.969  1.00  0.00
ATOM     37  CA  ASP    42     115.976 120.160  56.935  1.00  0.00
ATOM     38  CA  GLN    43     118.907 117.898  56.060  1.00  0.00
ATOM     39  CA  ILE    44     116.726 114.771  56.420  1.00  0.00
ATOM     40  CA  LYS    45     114.072 116.279  54.151  1.00  0.00
ATOM     41  CA  THR    46     116.782 117.048  51.580  1.00  0.00
ATOM     42  CA  MET    47     118.224 113.584  52.053  1.00  0.00
ATOM     43  CA  HIS    48     114.802 111.979  51.482  1.00  0.00
ATOM     44  CA  ASP    49     113.820 114.379  48.713  1.00  0.00
ATOM     45  CA  PHE    50     110.596 115.081  50.609  1.00  0.00
ATOM     46  CA  PHE    51     110.718 118.761  49.631  1.00  0.00
ATOM     47  CA  LYS    52     110.311 117.762  45.991  1.00  0.00
ATOM     48  CA  GLN    53     107.931 114.828  46.479  1.00  0.00
ATOM     49  CA  MET    54     105.411 116.963  48.418  1.00  0.00
ATOM     50  CA  HIS    55     106.185 120.380  46.921  1.00  0.00
ATOM     51  CA  THR    56     107.203 121.911  50.229  1.00  0.00
ATOM     52  CA  ASN    57     108.490 125.505  49.885  1.00  0.00
ATOM     53  CA  LYS    58     111.933 125.512  51.493  1.00  0.00
ATOM     54  CA  GLY    59     111.249 128.888  53.074  1.00  0.00
ATOM     55  CA  ALA    60     108.012 127.470  54.484  1.00  0.00
ATOM     56  CA  LEU    61     109.819 124.431  55.900  1.00  0.00
ATOM     57  CA  ASP    62     112.429 126.523  57.707  1.00  0.00
ATOM     58  CA  LYS    63     109.812 128.998  58.904  1.00  0.00
ATOM     59  CA  VAL    64     107.845 126.149  60.485  1.00  0.00
ATOM     60  CA  LEU    65     110.882 124.337  61.925  1.00  0.00
ATOM     61  CA  ARG    66     112.047 127.579  63.509  1.00  0.00
ATOM     62  CA  ASN    67     108.670 128.178  65.175  1.00  0.00
ATOM     63  CA  TYR    68     108.359 124.553  66.246  1.00  0.00
ATOM     64  CA  MET    69     111.845 124.515  67.697  1.00  0.00
ATOM     65  CA  LYS    70     111.018 127.770  69.449  1.00  0.00
ATOM     66  CA  ASP    71     108.157 126.056  71.236  1.00  0.00
ATOM     67  CA  TYR    72     110.462 123.575  72.897  1.00  0.00
ATOM     68  CA  ARG    73     111.392 125.007  76.309  1.00  0.00
ATOM     69  CA  ALA    74     114.987 126.098  76.725  1.00  0.00
ATOM     70  CA  VAL    75     114.897 125.775  80.511  1.00  0.00
ATOM     71  CA  ILE    76     113.987 122.078  80.232  1.00  0.00
ATOM     72  CA  LYS    77     116.966 119.737  80.631  1.00  0.00
ATOM     73  CA  SER    78     114.631 120.598  70.951  1.00  0.00
ATOM     74  CA  ILE    79     117.742 118.450  71.206  1.00  0.00
ATOM     75  CA  GLY    80     113.209 116.235  69.484  1.00  0.00
ATOM     76  CA  VAL    81     116.071 116.417  66.983  1.00  0.00
ATOM     77  CA  ASP    82     117.402 113.123  68.357  1.00  0.00
ATOM     78  CA  LYS    83     114.116 111.221  68.049  1.00  0.00
ATOM     79  CA  PHE    84     113.730 112.602  64.509  1.00  0.00
ATOM     80  CA  LYS    85     117.172 111.443  63.442  1.00  0.00
ATOM     81  CA  LYS    86     116.739 108.044  65.081  1.00  0.00
ATOM     82  CA  VAL    87     113.367 107.518  63.383  1.00  0.00
ATOM     83  CA  TYR    88     115.095 108.509  60.176  1.00  0.00
ATOM     84  CA  ARG    89     117.688 105.786  60.641  1.00  0.00
ATOM     85  CA  LEU    90     115.168 103.167  61.700  1.00  0.00
ATOM     86  CA  LEU    91     113.039 103.898  58.641  1.00  0.00
ATOM     87  CA  GLU    92     106.342 108.561  51.097  1.00  0.00
ATOM     88  CA  SER    93     103.358 109.894  52.996  1.00  0.00
ATOM     89  CA  GLU    94     103.854 107.364  55.812  1.00  0.00
ATOM     90  CA  THR    95     107.565 108.219  55.937  1.00  0.00
ATOM     91  CA  MET    96     106.646 111.901  56.070  1.00  0.00
ATOM     92  CA  GLU    97     104.173 111.298  58.881  1.00  0.00
ATOM     93  CA  LEU    98     106.622 109.310  61.019  1.00  0.00
ATOM     94  CA  LEU    99     109.322 111.953  60.710  1.00  0.00
ATOM     95  CA  HIS   100     106.922 114.878  61.260  1.00  0.00
ATOM     96  CA  ALA   101     105.442 113.055  64.237  1.00  0.00
ATOM     97  CA  ILE   102     108.882 112.599  65.767  1.00  0.00
ATOM     98  CA  ALA   103     109.635 116.286  65.293  1.00  0.00
ATOM     99  CA  GLU   104     106.603 117.478  67.276  1.00  0.00
ATOM    100  CA  ASN   105     109.377 119.328  82.257  1.00  0.00
ATOM    101  CA  PRO   106     106.934 117.503  84.518  1.00  0.00
ATOM    102  CA  ASN   107     105.187 114.137  84.089  1.00  0.00
ATOM    103  CA  PHE   108     101.560 113.466  83.151  1.00  0.00
ATOM    104  CA  LEU   109     101.089 112.137  86.662  1.00  0.00
ATOM    105  CA  PHE   110     102.407 115.395  88.079  1.00  0.00
ATOM    106  CA  SER   111     100.044 117.413  85.888  1.00  0.00
ATOM    107  CA  LYS   112      97.162 115.228  87.032  1.00  0.00
ATOM    108  CA  PHE   113      98.011 115.303  90.738  1.00  0.00
ATOM    109  CA  ASP   114      98.541 119.063  90.769  1.00  0.00
ATOM    110  CA  ARG   115      95.186 119.541  89.049  1.00  0.00
ATOM    111  CA  SER   116      96.834 121.386  86.175  1.00  0.00
ATOM    112  CA  ILE   117      94.729 123.177  83.607  1.00  0.00
ATOM    113  CA  LEU   118      96.192 120.879  81.009  1.00  0.00
ATOM    114  CA  GLY   119      95.040 117.764  82.896  1.00  0.00
ATOM    115  CA  ILE   120      91.595 119.295  83.422  1.00  0.00
ATOM    116  CA  PHE   121      91.426 119.947  79.700  1.00  0.00
ATOM    117  CA  PHE   125      92.398 116.431  78.630  1.00  0.00
ATOM    118  CA  SER   126      90.675 114.523  81.426  1.00  0.00
ATOM    119  CA  LYS   132      93.915 113.020  82.722  1.00  0.00
ATOM    120  CA  MET   133      94.245 111.049  79.475  1.00  0.00
ATOM    121  CA  SER   134      97.604 111.337  77.655  1.00  0.00
ATOM    122  CA  ILE   135      97.644 114.951  78.872  1.00  0.00
ATOM    123  CA  ARG   136     101.080 115.843  77.503  1.00  0.00
ATOM    124  CA  GLU   137     100.931 113.763  74.330  1.00  0.00
ATOM    125  CA  MET   138      99.875 117.178  68.938  1.00  0.00
ATOM    126  CA  ASP   139      97.616 120.188  69.388  1.00  0.00
ATOM    127  CA  SER   140     100.547 122.621  69.474  1.00  0.00
ATOM    128  CA  GLN   141     102.387 121.019  66.585  1.00  0.00
ATOM    129  CA  ILE   142      99.318 121.092  64.344  1.00  0.00
ATOM    130  CA  GLU   143      98.305 124.580  65.479  1.00  0.00
ATOM    131  CA  LEU   144     101.665 126.034  64.440  1.00  0.00
ATOM    132  CA  TYR   145      96.353 118.051  72.428  1.00  0.00
ATOM    133  CA  GLY   146      99.737 117.371  70.822  1.00  0.00
ATOM    134  CA  THR   147      97.995 116.678  67.528  1.00  0.00
ATOM    135  CA  ASN   148      95.891 119.839  67.755  1.00  0.00
ATOM    136  CA  LEU   149      99.130 121.754  68.309  1.00  0.00
ATOM    137  CA  LEU   151     100.697 120.001  65.317  1.00  0.00
ATOM    138  CA  LEU   152      97.695 120.865  63.129  1.00  0.00
ATOM    139  CA  LYS   153      97.606 124.535  64.181  1.00  0.00
ATOM    140  CA  LEU   154     101.268 124.916  63.233  1.00  0.00
ATOM    141  CA  MET   157     101.014 124.920  60.858  1.00  0.00
ATOM    142  CA  THR   158      98.221 127.500  60.564  1.00  0.00
ATOM    143  CA  ASP   159     100.531 130.506  60.892  1.00  0.00
ATOM    144  CA  GLU   160     102.509 132.485  58.321  1.00  0.00
ATOM    145  CA  GLU   161     103.508 130.107  55.507  1.00  0.00
ATOM    146  CA  VAL   162     104.262 127.661  58.305  1.00  0.00
ATOM    147  CA  ASN   163     101.942 125.174  56.549  1.00  0.00
ATOM    148  CA  PHE   164     104.479 122.848  55.007  1.00  0.00
ATOM    149  CA  TYR   165     101.658 120.557  53.909  1.00  0.00
ATOM    150  CA  ALA   166      99.922 123.204  51.816  1.00  0.00
ATOM    151  CA  ASN   167     100.420 121.198  48.613  1.00  0.00
ATOM    152  CA  LEU   168      99.149 117.775  49.694  1.00  0.00
ATOM    153  CA  LYS   169      95.798 116.581  48.386  1.00  0.00
ATOM    154  CA  THR   170      92.930 116.819  50.857  1.00  0.00
ATOM    155  CA  ILE   171      96.461 115.953  52.547  1.00  0.00
ATOM    156  CA  GLU   172      93.020 113.020  51.233  1.00  0.00
ATOM    157  CA  GLN   173      96.744 113.059  51.945  1.00  0.00
ATOM    158  CA  TYR   174      96.363 115.784  54.538  1.00  0.00
ATOM    159  CA  ASN   175      93.739 113.654  56.259  1.00  0.00
ATOM    160  CA  ASP   176      95.538 110.551  61.370  1.00  0.00
ATOM    161  CA  TYR   177      98.887 108.773  61.286  1.00  0.00
ATOM    162  CA  VAL   178     100.651 111.606  63.123  1.00  0.00
ATOM    163  CA  ARG   179      98.007 111.601  65.872  1.00  0.00
ATOM    164  CA  ASP   180      98.174 107.807  66.152  1.00  0.00
ATOM    165  CA  LEU   181     101.965 107.830  66.389  1.00  0.00
ATOM    166  CA  LEU   182     102.391 110.652  68.904  1.00  0.00
ATOM    167  CA  MET   183      99.641 109.346  71.189  1.00  0.00
ATOM    168  CA  LYS   184     101.585 106.092  71.244  1.00  0.00
ATOM    169  CA  PHE   185     104.611 107.859  72.772  1.00  0.00
ATOM    170  CA  ASP   186     102.596 107.996  75.990  1.00  0.00
ATOM    171  CA  LEU   187     104.472 105.666  78.338  1.00  0.00
ATOM    172  CA  GLU   188     101.278 104.321  79.889  1.00  0.00
ATOM    173  CA  LYS   189     100.576 102.624  76.580  1.00  0.00
ATOM    174  CA  TYR   190     103.943 100.896  76.471  1.00  0.00
ATOM    175  CA  MET   191     102.745  97.475  77.674  1.00  0.00
ATOM    176  CA  LYS   192      99.948  97.240  75.121  1.00  0.00
TER
END
