
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# ERROR! Check the ATOM numbers 100 and 104 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 111 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# ERROR! Check the ATOM numbers 114 and 117 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 115 and 118 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 116 and 119 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 134 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# ERROR! Check the ATOM numbers 133 and 138 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 134 and 139 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 135 and 140 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# ERROR! Check the ATOM numbers 136 and 141 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 164 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# ERROR! Check the ATOM numbers 137 and 144 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 167 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# ERROR! Check the ATOM numbers 143 and 150 (molecule: 1)
#        The distance between atoms is too small! 
#        Check if some ATOM coordinates are not repeated. 

# WARNING! There is CA atom duplicated inside the residue 173 (molecule: 1)
#          Only one atom (first) is used for calculations. 

# Molecule1: number of CA atoms  164 (  174),  selected  125 , name T0287TS383_1
# Molecule2: number of CA atoms  161 ( 1345),  selected  125 , name T0287.pdb
# PARAMETERS: T0287TS383_1.T0287.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39        28 - 70          4.87    36.46
  LONGEST_CONTINUOUS_SEGMENT:    39        29 - 71          4.75    36.75
  LONGEST_CONTINUOUS_SEGMENT:    39        30 - 72          4.92    36.89
  LONGEST_CONTINUOUS_SEGMENT:    39        70 - 109         4.95    28.33
  LCS_AVERAGE:     18.54

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        75 - 106         1.91    28.40
  LCS_AVERAGE:     11.36

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        79 - 106         0.90    28.41
  LCS_AVERAGE:      9.08

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  161
LCS_GDT     K      21     K      21      3   10   12     3    3    3    4    5    9   10   10   10   11   13   14   15   18   21   26   33   36   40   41 
LCS_GDT     L      22     L      22      8   10   12     6    8    8    8    8    9   10   10   10   11   12   13   16   19   21   22   25   29   36   39 
LCS_GDT     I      23     I      23      8   10   12     6    8    8    8    8    9   10   10   10   11   14   17   18   19   22   26   28   31   36   40 
LCS_GDT     E      24     E      24      8   10   12     6    8    8    8    8    9   10   10   10   12   15   17   18   23   25   27   32   36   40   42 
LCS_GDT     S      25     S      25      8   10   29     6    8    8    8    8    9   10   13   14   18   20   23   24   28   31   35   38   40   42   42 
LCS_GDT     L      26     L      26      8   10   30     6    8    8    8    8    9   10   13   14   18   20   23   24   28   31   34   38   40   42   42 
LCS_GDT     Q      27     Q      27      8   10   31     6    8    8    8    8    9   10   10   11   12   15   19   20   24   27   32   36   39   41   42 
LCS_GDT     E      28     E      28      8   10   39     6    8    8    8    8    9   10   10   13   19   22   26   29   31   35   38   38   40   42   42 
LCS_GDT     N      29     N      29      8   10   39     3    8    8    8    8    9   15   19   22   25   29   30   32   35   37   38   38   40   42   42 
LCS_GDT     E      30     E      30      3   10   39     0    3    3    4    8    9   10   10   17   22   29   30   32   35   37   38   38   40   42   42 
LCS_GDT     D      35     D      35     23   26   39     9   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     E      36     E      36     23   26   39     9   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     K      37     K      37     23   26   39    10   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     K      38     K      38     23   26   39     5   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     K      39     K      39     23   26   39     6   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     I      40     I      40     23   26   39     7   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     I      41     I      41     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     D      42     D      42     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     Q      43     Q      43     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     I      44     I      44     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     K      45     K      45     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     T      46     T      46     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     M      47     M      47     23   26   39    10   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     H      48     H      48     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     D      49     D      49     23   26   39     3   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     F      50     F      50     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     F      51     F      51     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     K      52     K      52     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     Q      53     Q      53     23   26   39    11   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     M      54     M      54     23   26   39     4   18   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     H      55     H      55     23   26   39     4   15   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     T      56     T      56     23   26   39     4   16   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     N      57     N      57     23   26   39     4   12   22   23   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     K      58     K      58      4   26   39     3    7   18   22   24   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     G      59     G      59      4   26   39     3    4    4   20   22   25   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     A      60     A      60      4   26   39     3    4    4    6    6    7   10   15   20   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     L      61     L      61      9   10   39     3    4    9    9    9   10   10   11   12   14   16   17   24   29   33   35   36   38   39   42 
LCS_GDT     D      62     D      62      9   10   39     4    7    9    9    9   10   10   11   17   21   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     K      63     K      63      9   10   39     4    7    9    9    9   10   10   10   16   19   26   33   33   35   37   38   38   40   42   42 
LCS_GDT     V      64     V      64      9   10   39     4    7    9    9    9   10   12   15   20   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     L      65     L      65      9   10   39     4    7    9    9    9   10   10   16   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     R      66     R      66      9   10   39     4    7    9    9    9   10   23   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     N      67     N      67      9   10   39     4    7    9    9   11   19   26   27   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     Y      68     Y      68      9   10   39     4    7    9   11   11   14   16   26   29   29   32   33   33   35   37   38   38   40   42   42 
LCS_GDT     M      69     M      69      9   10   39     4    5    9    9    9   13   16   18   22   26   30   30   33   34   37   38   38   40   42   42 
LCS_GDT     K      70     K      70      4   10   39     3    4    4    5    9   10   11   13   21   26   28   29   31   34   37   38   38   40   42   42 
LCS_GDT     D      71     D      71      9   10   39     5    8    9    9    9   10   15   17   21   27   30   33   34   35   35   36   38   40   42   42 
LCS_GDT     Y      72     Y      72      9   10   39     5    8    9    9    9   14   19   24   29   32   34   34   35   35   36   36   37   39   43   45 
LCS_GDT     R      73     R      73      9   10   39     3    8    9   13   17   22   26   29   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     A      74     A      74      9   10   39     5    8    9   13   17   22   26   29   32   33   34   34   35   35   36   37   39   40   43   45 
LCS_GDT     V      75     V      75      9   31   39     5    8    9   16   23   25   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     I      76     I      76      9   31   39     5   15   23   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     K      77     K      77      9   31   39     5    8    9    9    9   14   22   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     S      78     S      78      9   31   39     4    8    9    9    9   10   17   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     I      79     I      79     27   31   39     3    7    9   27   28   28   28   31   31   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     V      81     V      81     27   31   39     5   21   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     D      82     D      82     27   31   39     5   13   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     K      83     K      83     27   31   39     5   13   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     F      84     F      84     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     K      85     K      85     27   31   39    11   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     K      86     K      86     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     V      87     V      87     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     Y      88     Y      88     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     R      89     R      89     27   31   39     6   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     L      90     L      90     27   31   39    14   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     L      91     L      91     27   31   39    14   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     E      92     E      92     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     S      93     S      93     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     E      94     E      94     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     T      95     T      95     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     M      96     M      96     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     E      97     E      97     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     L      98     L      98     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     L      99     L      99     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     H     100     H     100     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     A     101     A     101     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     I     102     I     102     27   31   39    14   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     A     103     A     103     27   31   39    14   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     E     104     E     104     27   31   39     5   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     N     105     N     105     27   31   39    15   22   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     P     106     P     106     27   31   39     9   21   26   27   28   28   28   31   32   33   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     N     107     N     107      4   28   39     4    4    4    4    8   15   23   25   29   31   34   34   35   36   36   37   39   40   43   45 
LCS_GDT     F     108     F     108      4    5   39     4    4    5    7    8    9   13   19   25   28   31   33   35   35   36   37   39   40   43   45 
LCS_GDT     L     109     L     109      3    5   39     3    3    5    7    7    9   10   13   17   22   27   30   31   34   35   36   39   40   41   45 
LCS_GDT     K     112     K     112      5    8   37     4    4    6    7   10   10   10   12   14   15   16   19   20   21   23   25   25   29   34   37 
LCS_GDT     F     113     F     113      5    8   17     4    4    5    7   10   11   12   12   14   15   16   19   20   21   23   25   28   32   34   39 
LCS_GDT     D     114     D     114      5    8   17     4    4    5    7   10   12   12   12   14   15   16   19   20   21   23   25   28   32   34   41 
LCS_GDT     R     115     R     115      5    8   17     4    4    6    9   11   12   12   12   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     S     116     S     116      5    8   17     3    4    6    7   10   10   10   12   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     I     117     I     117      4    8   17     3    4    6    7   10   10   10   12   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     L     118     L     118      5    8   17     3    4    6    7   10   10   10   12   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     G     119     G     119      5    8   17     3    4    5    7   10   10   10   12   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     I     120     I     120      5    7   17     3    4    5    7    7    9   10   12   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     F     121     F     121      5    6   17     3    4    5    7    7    9   10   12   12   13   15   18   20   21   23   25   25   28   29   30 
LCS_GDT     L     122     L     122      5    6   17     3    4    5    7    8    9   10   12   12   13   15   17   19   20   22   25   25   28   29   30 
LCS_GDT     I     135     I     135     12   12   14     9    9   11   12   12   12   12   13   13   13   13   13   13   13   14   14   14   18   20   25 
LCS_GDT     R     136     R     136     12   12   14     9    9   11   12   12   12   12   13   13   13   13   13   13   13   14   16   22   23   29   29 
LCS_GDT     E     137     E     137     12   12   14     9    9   11   12   12   12   12   13   13   13   13   14   18   20   21   24   25   26   29   29 
LCS_GDT     M     138     M     138     12   12   14     9    9   11   12   12   12   12   13   13   15   16   19   20   21   22   25   25   28   29   30 
LCS_GDT     D     139     D     139     12   12   14     9    9   11   12   12   12   12   13   13   13   15   19   20   21   23   25   25   28   29   30 
LCS_GDT     S     140     S     140     12   12   14     9    9   11   12   12   12   12   13   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     Q     141     Q     141     12   12   14     9    9   11   12   12   12   12   13   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     I     142     I     142     12   12   14     9    9   11   12   12   12   12   13   14   15   16   19   20   21   23   25   25   28   29   30 
LCS_GDT     E     143     E     143     12   12   14     9    9   11   12   12   12   12   13   14   15   16   18   20   21   23   25   25   28   28   30 
LCS_GDT     L     144     L     144     12   12   14     4    9   11   12   12   12   12   13   13   13   14   17   20   21   23   24   25   28   28   30 
LCS_GDT     Y     145     Y     145     12   12   14     4    9   11   12   12   12   12   13   13   13   13   13   16   18   20   21   22   23   26   30 
LCS_GDT     G     146     G     146     12   12   14     4    9   11   12   12   12   12   13   13   13   14   15   16   18   20   21   22   23   26   28 
LCS_GDT     T     147     T     147      3    4   14     3    3    3    4    5    6   10   13   13   14   15   16   17   19   20   22   23   25   26   28 
LCS_GDT     N     148     N     148      3    4   14     3    3    3    4    4    4   10   11   12   14   15   16   17   19   20   22   23   25   25   28 
LCS_GDT     M     157     M     157      3    3    6     0    3    3    3    3    3    3    3    5    9   11   14   15   16   17   19   19   19   21   21 
LCS_GDT     T     158     T     158      3    3    6     0    3    3    3    4    5    5    7    7    9   11   14   15   16   17   19   19   19   21   21 
LCS_GDT     D     159     D     159      3    3    6     0    3    3    3    3    3    5    6    7    9   11   14   15   16   17   19   19   19   21   21 
LCS_GDT     Y     165     Y     165      0    3   13     0    0    1    3    3    3    4    7    7    9   11   14   15   16   18   20   21   22   24   25 
LCS_GDT     L     168     L     168      3    4   13     3    3    3    4    4    6    6    8   11   12   13   13   14   16   17   19   19   19   21   21 
LCS_GDT     K     169     K     169      3   11   13     3    3    3    9   10   11   12   12   14   14   15   15   15   16   17   19   19   19   21   21 
LCS_GDT     T     170     T     170     10   11   13     8    9   10   10   11   12   12   12   14   14   15   15   15   16   17   18   23   23   37   41 
LCS_GDT     I     171     I     171     10   11   13     8    9   10   10   11   12   12   12   14   14   15   15   15   22   30   33   37   37   40   41 
LCS_GDT     Y     174     Y     174     10   11   13     8    9   10   10   11   12   12   12   14   14   15   16   18   31   35   36   39   40   43   45 
LCS_GDT     N     175     N     175     10   11   13     8    9   10   10   11   12   12   12   14   14   15   19   21   25   35   36   37   40   43   45 
LCS_GDT     D     176     D     176     10   11   13     8    9   10   10   11   12   12   18   20   28   31   32   34   36   36   37   39   40   43   45 
LCS_GDT     Y     177     Y     177     10   11   13     8    9   10   10   11   12   12   22   24   28   31   32   34   36   36   37   39   40   43   45 
LCS_GDT     V     178     V     178     10   11   13     8    9   10   10   11   12   12   12   14   16   17   19   21   30   32   35   37   40   43   45 
LCS_GDT     R     179     R     179     10   11   13     6    9   10   10   11   12   12   12   14   14   15   18   19   30   32   35   38   40   41   45 
LCS_GDT     D     180     D     180     10   11   13     8    9   10   10   11   12   12   12   20   21   22   27   33   36   36   37   38   40   43   45 
LCS_GDT     L     181     L     181     10   11   13     3    9   10   10   11   12   12   12   14   14   15   27   27   30   32   37   38   40   43   45 
LCS_AVERAGE  LCS_A:  12.99  (   9.08   11.36   18.54 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     22     26     27     28     28     28     31     32     33     34     34     35     36     37     38     39     40     43     45 
GDT PERCENT_CA   9.32  13.66  16.15  16.77  17.39  17.39  17.39  19.25  19.88  20.50  21.12  21.12  21.74  22.36  22.98  23.60  24.22  24.84  26.71  27.95
GDT RMS_LOCAL    0.35   0.50   0.78   0.90   1.02   1.02   1.02   1.91   2.40   2.44   2.72   2.72   3.14   3.94   4.27   4.70   4.60   4.80   5.37   5.63
GDT RMS_ALL_CA  28.57  28.60  28.39  28.41  28.37  28.37  28.37  28.40  28.44  28.44  28.45  28.45  28.32  28.03  36.66  36.25  27.83  27.82  27.64  27.63

#      Molecule1      Molecule2       DISTANCE
LGA    K      21      K      21         16.529
LGA    L      22      L      22         16.642
LGA    I      23      I      23         14.899
LGA    E      24      E      24         15.089
LGA    S      25      S      25         15.534
LGA    L      26      L      26         15.597
LGA    Q      27      Q      27         16.676
LGA    E      28      E      28         19.669
LGA    N      29      N      29         19.411
LGA    E      30      E      30         19.631
LGA    D      35      D      35         21.554
LGA    E      36      E      36         20.410
LGA    K      37      K      37         18.170
LGA    K      38      K      38         18.931
LGA    K      39      K      39         19.787
LGA    I      40      I      40         18.026
LGA    I      41      I      41         18.457
LGA    D      42      D      42         20.437
LGA    Q      43      Q      43         18.678
LGA    I      44      I      44         17.783
LGA    K      45      K      45         20.797
LGA    T      46      T      46         20.854
LGA    M      47      M      47         18.281
LGA    H      48      H      48         21.064
LGA    D      49      D      49         23.306
LGA    F      50      F      50         21.376
LGA    F      51      F      51         20.796
LGA    K      52      K      52         24.948
LGA    Q      53      Q      53         24.746
LGA    M      54      M      54         22.323
LGA    H      55      H      55         25.722
LGA    T      56      T      56         29.835
LGA    N      57      N      57         28.184
LGA    K      58      K      58         27.381
LGA    G      59      G      59         28.332
LGA    A      60      A      60         30.125
LGA    L      61      L      61         31.438
LGA    D      62      D      62         28.698
LGA    K      63      K      63         29.319
LGA    V      64      V      64         28.049
LGA    L      65      L      65         22.014
LGA    R      66      R      66         20.480
LGA    N      67      N      67         23.682
LGA    Y      68      Y      68         20.582
LGA    M      69      M      69         16.409
LGA    K      70      K      70         16.861
LGA    D      71      D      71         11.010
LGA    Y      72      Y      72          7.641
LGA    R      73      R      73          5.460
LGA    A      74      A      74          5.647
LGA    V      75      V      75          3.399
LGA    I      76      I      76          1.017
LGA    K      77      K      77          3.747
LGA    S      78      S      78          3.976
LGA    I      79      I      79          3.385
LGA    V      81      V      81          2.269
LGA    D      82      D      82          3.008
LGA    K      83      K      83          3.284
LGA    F      84      F      84          2.117
LGA    K      85      K      85          1.310
LGA    K      86      K      86          1.567
LGA    V      87      V      87          1.761
LGA    Y      88      Y      88          1.436
LGA    R      89      R      89          1.300
LGA    L      90      L      90          2.131
LGA    L      91      L      91          1.801
LGA    E      92      E      92          0.653
LGA    S      93      S      93          0.854
LGA    E      94      E      94          0.920
LGA    T      95      T      95          0.613
LGA    M      96      M      96          0.243
LGA    E      97      E      97          0.736
LGA    L      98      L      98          0.409
LGA    L      99      L      99          0.969
LGA    H     100      H     100          1.223
LGA    A     101      A     101          1.015
LGA    I     102      I     102          1.725
LGA    A     103      A     103          2.473
LGA    E     104      E     104          1.928
LGA    N     105      N     105          1.059
LGA    P     106      P     106          3.700
LGA    N     107      N     107         10.355
LGA    F     108      F     108         10.694
LGA    L     109      L     109         12.669
LGA    K     112      K     112         24.274
LGA    F     113      F     113         23.441
LGA    D     114      D     114         22.076
LGA    R     115      R     115         27.805
LGA    S     116      S     116         31.242
LGA    I     117      I     117         29.449
LGA    L     118      L     118         32.727
LGA    G     119      G     119         38.513
LGA    I     120      I     120         40.069
LGA    F     121      F     121         40.867
LGA    L     122      L     122         43.003
LGA    I     135      I     135         63.811
LGA    R     136      R     136         63.675
LGA    E     137      E     137         61.439
LGA    M     138      M     138         63.000
LGA    D     139      D     139         65.506
LGA    S     140      S     140         64.904
LGA    Q     141      Q     141         63.309
LGA    I     142      I     142         65.626
LGA    E     143      E     143         67.564
LGA    L     144      L     144         66.934
LGA    Y     145      Y     145         66.603
LGA    G     146      G     146         68.005
LGA    T     147      T     147         64.798
LGA    N     148      N     148         59.274
LGA    M     157      M     157         40.986
LGA    T     158      T     158         36.529
LGA    D     159      D     159         32.350
LGA    Y     165      Y     165         17.467
LGA    L     168      L     168         18.876
LGA    K     169      K     169         13.538
LGA    T     170      T     170         14.288
LGA    I     171      I     171         17.728
LGA    Y     174      Y     174         15.114
LGA    N     175      N     175         18.806
LGA    D     176      D     176         17.785
LGA    Y     177      Y     177         14.525
LGA    V     178      V     178         18.497
LGA    R     179      R     179         21.574
LGA    D     180      D     180         19.720
LGA    L     181      L     181         18.688

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  164  161    4.0     31    1.91    18.323    16.778     1.540

LGA_LOCAL      RMSD =  1.912  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 28.482  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 25.423  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.272385 * X  +  -0.095319 * Y  +  -0.957455 * Z  + 151.439896
  Y_new =   0.276408 * X  +  -0.945386 * Y  +   0.172752 * Z  + 168.078400
  Z_new =  -0.921632 * X  +  -0.311704 * Y  +  -0.231162 * Z  +  49.284351 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.208905    0.932688  [ DEG:  -126.5609     53.4391 ]
  Theta =   1.172264    1.969328  [ DEG:    67.1658    112.8342 ]
  Phi   =   0.792730   -2.348863  [ DEG:    45.4201   -134.5799 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0287TS383_1                                  
REMARK     2: T0287.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0287TS383_1.T0287.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  164  161   4.0   31   1.91  16.778    25.42
REMARK  ---------------------------------------------------------- 
MOLECULE T0287TS383_1
PFRMAT TS
TARGET T0287
MODEL 1
PARENT 1y1uA
ATOM      1  CA  SER     2     102.442 113.957  95.634  1.00  0.00
ATOM      2  CA  ASN     3      99.940 112.959  92.945  1.00  0.00
ATOM      3  CA  ASN     4      99.646 115.749  90.360  1.00  0.00
ATOM      4  CA  MET     5     103.412 116.098  90.379  1.00  0.00
ATOM      5  CA  ARG     6     104.113 112.352  90.033  1.00  0.00
ATOM      6  CA  LYS     7     101.851 112.782  86.979  1.00  0.00
ATOM      7  CA  LEU     8     104.291 115.039  85.112  1.00  0.00
ATOM      8  CA  PHE     9     107.098 112.563  85.908  1.00  0.00
ATOM      9  CA  SER    10     105.270 110.240  83.488  1.00  0.00
ATOM     10  CA  MET    11     104.256 112.860  80.928  1.00  0.00
ATOM     11  CA  ILE    12     108.051 113.339  80.890  1.00  0.00
ATOM     12  CA  ALA    13     109.113 109.727  80.389  1.00  0.00
ATOM     13  CA  ASP    14     106.555 109.447  77.593  1.00  0.00
ATOM     14  CA  SER    15     108.140 112.491  75.993  1.00  0.00
ATOM     15  CA  LYS    16     111.457 110.736  76.643  1.00  0.00
ATOM     16  CA  ASP    17     110.466 107.594  74.735  1.00  0.00
ATOM     17  CA  LYS    18     108.372 109.264  72.014  1.00  0.00
ATOM     18  CA  LYS    19     111.446 111.499  71.526  1.00  0.00
ATOM     19  CA  GLU    20     113.750 108.427  71.869  1.00  0.00
ATOM     20  CA  LYS    21     112.135 106.703  68.934  1.00  0.00
ATOM     21  CA  LEU    22     111.733 109.611  66.547  1.00  0.00
ATOM     22  CA  ILE    23     115.520 109.659  66.013  1.00  0.00
ATOM     23  CA  GLU    24     115.320 105.856  65.717  1.00  0.00
ATOM     24  CA  SER    25     113.213 106.447  62.663  1.00  0.00
ATOM     25  CA  LEU    26     115.359 109.469  61.773  1.00  0.00
ATOM     26  CA  GLN    27     118.524 107.339  61.779  1.00  0.00
ATOM     27  CA  GLU    28     117.288 104.480  59.572  1.00  0.00
ATOM     28  CA  ASN    29     115.280 106.920  57.437  1.00  0.00
ATOM     29  CA  GLU    30     118.763 108.326  56.887  1.00  0.00
ATOM     30  CA  ASP    35     120.329 104.933  56.136  1.00  0.00
ATOM     31  CA  GLU    36     117.563 104.774  53.504  1.00  0.00
ATOM     32  CA  LYS    37     118.522 108.109  51.929  1.00  0.00
ATOM     33  CA  LYS    38     122.239 107.265  52.070  1.00  0.00
ATOM     34  CA  LYS    39     121.629 103.989  50.252  1.00  0.00
ATOM     35  CA  ILE    40     118.991 105.242  47.830  1.00  0.00
ATOM     36  CA  ILE    41     121.554 107.866  46.874  1.00  0.00
ATOM     37  CA  ASP    42     124.200 105.330  45.894  1.00  0.00
ATOM     38  CA  GLN    43     121.488 103.594  43.803  1.00  0.00
ATOM     39  CA  ILE    44     120.458 106.869  41.959  1.00  0.00
ATOM     40  CA  LYS    45     124.161 106.646  41.218  1.00  0.00
ATOM     41  CA  THR    46     124.552 102.949  40.451  1.00  0.00
ATOM     42  CA  MET    47     121.818 103.759  37.908  1.00  0.00
ATOM     43  CA  HIS    48     123.704 106.674  36.373  1.00  0.00
ATOM     44  CA  ASP    49     126.673 104.286  36.393  1.00  0.00
ATOM     45  CA  PHE    50     125.159 101.475  34.273  1.00  0.00
ATOM     46  CA  PHE    51     123.800 104.213  31.984  1.00  0.00
ATOM     47  CA  LYS    52     126.851 106.121  30.835  1.00  0.00
ATOM     48  CA  GLN    53     127.775 102.495  30.163  1.00  0.00
ATOM     49  CA  MET    54     125.688 102.827  26.996  1.00  0.00
ATOM     50  CA  HIS    55     127.717 105.799  25.760  1.00  0.00
ATOM     51  CA  THR    56     130.769 103.573  26.324  1.00  0.00
ATOM     52  CA  ASN    57     129.741 100.385  24.492  1.00  0.00
ATOM     53  CA  LYS    58     131.588 101.989  21.511  1.00  0.00
ATOM     54  CA  GLY    59     134.343  99.432  22.116  1.00  0.00
ATOM     55  CA  ALA    60     132.109  96.844  20.537  1.00  0.00
ATOM     56  CA  LEU    61     132.765  93.283  19.307  1.00  0.00
ATOM     57  CA  ASP    62     130.091  91.672  17.201  1.00  0.00
ATOM     58  CA  LYS    63     127.415  89.621  18.956  1.00  0.00
ATOM     59  CA  VAL    64     128.549  90.196  22.561  1.00  0.00
ATOM     60  CA  LEU    65     128.381  94.013  22.683  1.00  0.00
ATOM     61  CA  ARG    66     125.032  94.035  20.954  1.00  0.00
ATOM     62  CA  ASN    67     124.031  91.410  23.574  1.00  0.00
ATOM     63  CA  TYR    68     125.278  93.475  26.526  1.00  0.00
ATOM     64  CA  MET    69     123.180  96.473  25.525  1.00  0.00
ATOM     65  CA  LYS    70     120.770  93.827  26.751  1.00  0.00
ATOM     66  CA  ASP    71     122.044  92.968  30.249  1.00  0.00
ATOM     67  CA  TYR    72     122.464  96.729  30.702  1.00  0.00
ATOM     68  CA  ARG    73     118.900  97.746  29.679  1.00  0.00
ATOM     69  CA  ALA    74     117.623  94.888  31.866  1.00  0.00
ATOM     70  CA  VAL    75     119.653  96.048  34.875  1.00  0.00
ATOM     71  CA  ILE    76     118.036  99.517  34.456  1.00  0.00
ATOM     72  CA  LYS    77     114.503  98.258  34.101  1.00  0.00
ATOM     73  CA  SER    78     114.997  96.613  37.512  1.00  0.00
ATOM     74  CA  ILE    79     116.888  99.624  39.014  1.00  0.00
ATOM     75  CA  VAL    81     114.543 102.385  37.872  1.00  0.00
ATOM     76  CA  ASP    82     111.799 100.180  39.299  1.00  0.00
ATOM     77  CA  LYS    83     113.452  99.939  42.767  1.00  0.00
ATOM     78  CA  PHE    84     114.287 103.649  42.506  1.00  0.00
ATOM     79  CA  LYS    85     110.754 104.715  41.688  1.00  0.00
ATOM     80  CA  LYS    86     109.391 102.276  44.310  1.00  0.00
ATOM     81  CA  VAL    87     111.687 103.416  47.084  1.00  0.00
ATOM     82  CA  TYR    88     111.209 107.118  46.279  1.00  0.00
ATOM     83  CA  ARG    89     107.674 106.855  47.641  1.00  0.00
ATOM     84  CA  LEU    90     109.075 104.760  50.570  1.00  0.00
ATOM     85  CA  LEU    91     111.443 107.642  51.222  1.00  0.00
ATOM     86  CA  GLU    92     108.621 110.250  50.929  1.00  0.00
ATOM     87  CA  SER    93     106.261 108.277  53.089  1.00  0.00
ATOM     88  CA  GLU    94     108.687 107.604  55.973  1.00  0.00
ATOM     89  CA  THR    95     109.663 111.279  55.778  1.00  0.00
ATOM     90  CA  MET    96     106.028 112.347  56.230  1.00  0.00
ATOM     91  CA  GLU    97     105.550 109.688  58.981  1.00  0.00
ATOM     92  CA  LEU    98     108.361 111.170  60.964  1.00  0.00
ATOM     93  CA  LEU    99     107.322 114.807  60.429  1.00  0.00
ATOM     94  CA  HIS   100     103.812 114.116  61.703  1.00  0.00
ATOM     95  CA  ALA   101     105.476 112.090  64.444  1.00  0.00
ATOM     96  CA  ILE   102     107.134 115.322  65.574  1.00  0.00
ATOM     97  CA  ALA   103     103.867 117.169  65.117  1.00  0.00
ATOM     98  CA  GLU   104     102.876 114.623  67.760  1.00  0.00
ATOM     99  CA  ASN   105     105.732 114.684  70.295  1.00  0.00
ATOM    100  CA  PRO   106     105.627 118.529  70.229  1.00  0.00
ATOM    101  CA  ASN   107     101.878 118.654  70.911  1.00  0.00
ATOM    102  CA  PHE   108     102.496 116.611  74.116  1.00  0.00
ATOM    103  CA  LEU   109     105.558 118.770  74.908  1.00  0.00
ATOM    104  CA  PHE   110     105.627 118.529  70.229  1.00  0.00
ATOM    105  CA  SER   111     103.510 121.965  74.457  1.00  0.00
ATOM    106  CA  LYS   112     101.170 120.363  77.032  1.00  0.00
ATOM    107  CA  PHE   113     103.892 119.650  79.607  1.00  0.00
ATOM    108  CA  ASP   114     105.479 123.066  78.966  1.00  0.00
ATOM    109  CA  ARG   115     102.127 124.756  79.511  1.00  0.00
ATOM    110  CA  SER   116     101.369 122.802  82.689  1.00  0.00
ATOM    111  CA  ILE   117     104.930 123.408  84.014  1.00  0.00
ATOM    112  CA  LEU   118     105.240 127.036  83.118  1.00  0.00
ATOM    113  CA  GLY   119     101.618 128.283  83.471  1.00  0.00
ATOM    114  CA  ILE   120     100.450 126.277  86.438  1.00  0.00
ATOM    115  CA  PHE   121     103.506 125.163  88.368  1.00  0.00
ATOM    116  CA  LEU   122     105.683 128.263  88.005  1.00  0.00
ATOM    117  CA  PRO   123     100.450 126.277  86.438  1.00  0.00
ATOM    118  CA  LYS   132     103.506 125.163  88.368  1.00  0.00
ATOM    119  CA  MET   133     105.683 128.263  88.005  1.00  0.00
ATOM    120  CA  SER   134     102.794 130.805  88.172  1.00  0.00
ATOM    121  CA  ILE   135     101.815 129.126  91.434  1.00  0.00
ATOM    122  CA  ARG   136     105.334 129.062  92.987  1.00  0.00
ATOM    123  CA  GLU   137     105.458 132.667  91.823  1.00  0.00
ATOM    124  CA  MET   138     102.254 133.666  93.704  1.00  0.00
ATOM    125  CA  ASP   139     103.469 131.565  96.645  1.00  0.00
ATOM    126  CA  SER   140     106.404 134.076  96.661  1.00  0.00
ATOM    127  CA  GLN   141     104.222 137.092  96.082  1.00  0.00
ATOM    128  CA  ILE   142     102.095 136.220  99.095  1.00  0.00
ATOM    129  CA  GLU   143     105.287 135.546 101.032  1.00  0.00
ATOM    130  CA  LEU   144     105.598 139.348 100.629  1.00  0.00
ATOM    131  CA  TYR   145     102.786 139.804 103.120  1.00  0.00
ATOM    132  CA  GLY   146     104.460 137.082 105.170  1.00  0.00
ATOM    133  CA  THR   147     102.700 134.201 103.441  1.00  0.00
ATOM    134  CA  ASN   148     104.299 130.769 103.591  1.00  0.00
ATOM    135  CA  MET   157     107.707 130.496 101.837  1.00  0.00
ATOM    136  CA  THR   158     107.708 129.739  98.089  1.00  0.00
ATOM    137  CA  ASP   159     109.860 126.690  98.634  1.00  0.00
ATOM    138  CA  GLU   160     102.700 134.201 103.441  1.00  0.00
ATOM    139  CA  GLU   161     104.299 130.769 103.591  1.00  0.00
ATOM    140  CA  VAL   162     107.707 130.496 101.837  1.00  0.00
ATOM    141  CA  ASN   163     107.708 129.739  98.089  1.00  0.00
ATOM    142  CA  PHE   164     110.838 123.172  89.074  1.00  0.00
ATOM    143  CA  TYR   165     114.312 123.285  87.667  1.00  0.00
ATOM    144  CA  ALA   166     109.860 126.690  98.634  1.00  0.00
ATOM    145  CA  ASN   167     112.980 125.583  96.761  1.00  0.00
ATOM    146  CA  LEU   168     113.036 126.245  92.992  1.00  0.00
ATOM    147  CA  LYS   169     114.886 122.914  92.677  1.00  0.00
ATOM    148  CA  THR   170     111.747 120.921  92.046  1.00  0.00
ATOM    149  CA  ILE   171     110.838 123.172  89.074  1.00  0.00
ATOM    150  CA  GLU   172     114.312 123.285  87.667  1.00  0.00
ATOM    151  CA  GLN   173     114.478 119.546  87.316  1.00  0.00
ATOM    152  CA  TYR   174     111.116 120.040  85.532  1.00  0.00
ATOM    153  CA  ASN   175     112.560 122.754  83.238  1.00  0.00
ATOM    154  CA  ASP   176     115.881 121.256  82.317  1.00  0.00
ATOM    155  CA  TYR   177     114.113 117.974  81.724  1.00  0.00
ATOM    156  CA  VAL   178     111.840 120.105  79.457  1.00  0.00
ATOM    157  CA  ARG   179     114.797 121.924  77.812  1.00  0.00
ATOM    158  CA  ASP   180     116.641 118.624  77.305  1.00  0.00
ATOM    159  CA  LEU   181     113.712 116.946  75.570  1.00  0.00
ATOM    160  CA  LEU   182     112.753 119.954  73.503  1.00  0.00
ATOM    161  CA  MET   183     116.309 120.659  72.349  1.00  0.00
ATOM    162  CA  LYS   184     116.754 117.079  71.127  1.00  0.00
ATOM    163  CA  PHE   185     113.615 117.218  68.966  1.00  0.00
ATOM    164  CA  ASP   186     118.451 118.883  66.491  1.00  0.00
ATOM    165  CA  LEU   187     116.214 116.032  65.252  1.00  0.00
ATOM    166  CA  GLU   188     114.186 118.018  62.739  1.00  0.00
ATOM    167  CA  LYS   189     117.309 120.002  61.943  1.00  0.00
ATOM    168  CA  TYR   190     118.794 116.701  60.733  1.00  0.00
ATOM    169  CA  MET   191     115.523 116.181  58.816  1.00  0.00
ATOM    170  CA  LYS   192     116.153 119.521  57.054  1.00  0.00
ATOM    171  CA  GLU   193     119.645 118.420  56.251  1.00  0.00
ATOM    172  CA  LYS   194     118.175 115.317  54.632  1.00  0.00
ATOM    173  CA  VAL   196     108.432 117.865  45.839  1.00  0.00
ATOM    174  CA  GLN   197     105.885 117.173  48.606  1.00  0.00
TER
END
