
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  176 (  176),  selected  150 , name T0287TS383_4
# Molecule2: number of CA atoms  161 ( 1345),  selected  150 , name T0287.pdb
# PARAMETERS: T0287TS383_4.T0287.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        64 - 95          4.99    24.73
  LCS_AVERAGE:     15.27

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        30 - 49          1.90    31.25
  LCS_AVERAGE:      6.95

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        32 - 49          0.66    30.67
  LCS_AVERAGE:      5.57

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  161
LCS_GDT     K      21     K      21      3    5   13     3    3    3    4    4    5    5    7    7    9   13   13   14   17   18   20   22   35   35   38 
LCS_GDT     L      22     L      22      4    5   13     4    4    4    4    4    5    7   11   12   13   20   24   28   33   38   40   41   42   43   45 
LCS_GDT     I      23     I      23      4    5   13     4    4    4    4    4    5    6    7    8   12   12   14   15   17   21   30   32   40   42   42 
LCS_GDT     E      24     E      24      4    5   13     4    4    4    4    4    7    9   10   10   12   13   14   17   18   23   30   32   40   42   43 
LCS_GDT     S      25     S      25      4    5   17     4    4    4    4    6    9   16   21   26   30   32   36   38   38   40   41   42   43   44   45 
LCS_GDT     L      26     L      26      4    5   17     4    4    4    4    4    6    7    8   10   12   16   19   25   28   32   35   39   42   43   45 
LCS_GDT     Q      27     Q      27      4    5   18     4    4    4    4    4    6    7    7   10   12   13   15   16   18   22   25   32   36   40   42 
LCS_GDT     E      28     E      28      4    5   28     4    4    4    4    4    6    7    7    9   11   13   15   19   26   31   36   39   41   43   45 
LCS_GDT     N      29     N      29      0    5   28     0    0    2    2    4    5    9   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     E      30     E      30      0   20   28     0    1   13   20   22   24   27   31   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     L      31     L      31      0   20   28     0    2    3    3    4    4   13   14   19   20   27   30   33   36   40   40   41   42   43   45 
LCS_GDT     L      32     L      32     18   20   28    11   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     N      33     N      33     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     T      34     T      34     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     D      35     D      35     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     E      36     E      36     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     K      37     K      37     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     K      38     K      38     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     K      39     K      39     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     I      40     I      40     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     I      41     I      41     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     D      42     D      42     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   48 
LCS_GDT     Q      43     Q      43     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   47 
LCS_GDT     I      44     I      44     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   47   51 
LCS_GDT     K      45     K      45     18   20   28    13   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   44   46   50   52 
LCS_GDT     T      46     T      46     18   20   28    11   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   44   46   50   52 
LCS_GDT     M      47     M      47     18   20   28    10   17   19   20   22   24   28   32   34   35   35   37   38   39   40   41   44   45   48   51 
LCS_GDT     H      48     H      48     18   20   28     9   17   19   20   22   24   27   32   34   35   35   37   38   39   41   42   45   47   50   52 
LCS_GDT     D      49     D      49     18   20   28     9   16   19   20   22   24   27   32   34   35   35   37   38   39   41   43   46   48   50   52 
LCS_GDT     F      50     F      50      7   19   28     5    6    7    7   12   15   20   26   32   35   35   37   38   39   41   43   46   48   50   52 
LCS_GDT     F      51     F      51      7    9   28     5    6    7    7    8   12   17   19   24   31   35   37   38   39   41   43   46   48   50   52 
LCS_GDT     K      52     K      52      7    9   28     5    6    7    7   11   13   16   23   26   31   35   37   38   39   41   43   46   48   50   52 
LCS_GDT     Q      53     Q      53      7    9   28     5    6   11   14   19   23   28   32   34   35   35   37   38   39   40   43   46   48   50   52 
LCS_GDT     M      54     M      54      7    9   28     4    6    7    7    8    8    9   11   20   24   29   36   37   39   39   41   42   43   46   50 
LCS_GDT     H      55     H      55      7   16   28     3    4    7    7    9   13   15   15   17   23   26   32   36   38   38   41   41   43   44   46 
LCS_GDT     T      56     T      56     14   16   28     3    5   10   14   15   16   17   18   19   20   22   26   32   34   40   41   46   48   50   52 
LCS_GDT     N      57     N      57     14   16   27    11   12   13   14   15   16   17   18   19   20   22   26   32   37   40   43   46   48   50   52 
LCS_GDT     K      58     K      58     14   16   27    11   12   13   14   15   16   17   18   18   20   22   26   32   37   40   43   46   48   50   52 
LCS_GDT     G      59     G      59     14   16   27    11   12   13   14   15   16   17   18   18   23   27   30   35   38   41   43   46   48   50   52 
LCS_GDT     A      60     A      60     14   16   27    11   12   13   14   15   16   17   18   19   23   27   31   35   38   41   43   46   48   50   52 
LCS_GDT     L      61     L      61     14   16   31    11   12   13   14   15   16   17   18   19   24   27   31   35   38   41   43   46   48   50   52 
LCS_GDT     D      62     D      62     14   16   31    11   12   13   14   15   16   17   18   19   24   27   31   35   38   41   43   46   48   50   52 
LCS_GDT     K      63     K      63     14   16   31    11   12   13   14   15   16   17   19   24   28   29   32   35   38   41   43   46   48   50   52 
LCS_GDT     V      64     V      64     14   16   32    11   12   13   14   15   16   18   22   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     L      65     L      65     14   16   32    11   12   13   14   15   17   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     R      66     R      66     14   16   32    11   12   13   14   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     N      67     N      67     14   16   32    11   12   13   14   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     Y      68     Y      68     14   16   32     6   12   13   14   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     M      69     M      69     14   16   32     4   10   13   14   15   16   19   22   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     K      70     K      70      4   16   32     3    4    6    8    9   15   17   22   25   29   31   33   34   38   41   43   46   48   50   52 
LCS_GDT     D      71     D      71      4    5   32     3    6    9   11   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     Y      72     Y      72      4    5   32     3    4    6    8   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     R      73     R      73      4    5   32     0    3    4    7   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     A      74     A      74      4    4   32     3    3    4    5    5   11   13   18   24   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     V      75     V      75      4    4   32     3    3    4    4    4    4    5    7    8   13   18   23   31   36   39   41   45   47   50   52 
LCS_GDT     I      76     I      76      4    4   32     3    3    4    4    4    6    7   10   15   23   30   33   34   36   39   42   45   48   50   52 
LCS_GDT     K      77     K      77      3    4   32     3    3    4    4    6   17   20   22   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     S      78     S      78      3    4   32     3    3    4    4    4    5    7    9   16   22   27   33   34   38   41   43   46   48   50   52 
LCS_GDT     I      79     I      79      3    4   32     3    3    4    4    4    5    7    9   11   14   19   29   34   36   39   42   45   47   50   52 
LCS_GDT     G      80     G      80     12   12   32     3   11   12   12   14   15   17   20   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     V      81     V      81     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     D      82     D      82     12   12   32     7   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     K      83     K      83     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     F      84     F      84     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     K      85     K      85     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     K      86     K      86     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     V      87     V      87     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     Y      88     Y      88     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     R      89     R      89     12   12   32     8   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     L      90     L      90     12   12   32     7   11   12   12   15   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     L      91     L      91     12   12   32     8   11   12   12   14   15   23   25   28   29   32   36   37   38   41   43   46   48   50   52 
LCS_GDT     E      92     E      92     13   13   32    11   13   14   18   21   23   28   32   34   35   35   37   38   39   41   43   46   48   50   52 
LCS_GDT     S      93     S      93     13   13   32    11   13   14   14   19   23   28   32   34   35   35   37   38   39   40   43   46   48   50   52 
LCS_GDT     E      94     E      94     13   13   32    11   13   14   14   15   19   22   29   34   35   35   37   38   39   41   43   46   48   50   52 
LCS_GDT     T      95     T      95     13   13   32    11   13   14   14   15   19   28   32   34   35   35   37   38   39   41   43   46   48   50   52 
LCS_GDT     M      96     M      96     13   13   17    11   13   16   18   21   24   28   32   34   35   35   37   38   39   40   43   46   48   50   52 
LCS_GDT     E      97     E      97     13   13   17    11   13   14   14   17   23   28   32   34   35   35   37   38   39   40   41   42   46   50   52 
LCS_GDT     L      98     L      98     13   13   17    11   13   14   14   15   19   28   32   34   35   35   37   38   39   40   41   42   46   50   52 
LCS_GDT     L      99     L      99     13   13   17    11   13   14   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   47 
LCS_GDT     H     100     H     100     13   13   17    11   13   17   18   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     A     101     A     101     13   13   17    11   13   14   14   21   23   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     I     102     I     102     13   13   17    10   13   14   14   15   19   22   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     A     103     A     103     13   13   17    10   16   19   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     E     104     E     104     13   13   17    11   13   17   20   22   24   28   32   34   35   35   37   38   39   40   41   42   43   44   45 
LCS_GDT     N     105     N     105      0    0   17     0    1    1    3    5    6    8   10   12   14   28   34   37   39   39   41   42   43   44   45 
LCS_GDT     P     106     P     106      0    4   17     0    1    1    3    5    6    8   10   10   11   14   14   17   19   35   38   42   43   44   44 
LCS_GDT     N     107     N     107      3    4   17     3    3    3    3    4    6    8   10   11   13   13   14   14   18   18   20   22   22   27   30 
LCS_GDT     F     108     F     108      4    5   17     3    4    4    5    5    6    8   10   11   13   13   14   14   18   19   20   23   26   28   30 
LCS_GDT     L     109     L     109      4    5   17     3    4    4    5    5    6    8   10   11   13   13   14   17   19   21   22   23   27   28   30 
LCS_GDT     F     110     F     110      4    7   17     3    4    4    5    7    7    8   10   11   13   14   14   17   19   21   22   23   27   28   30 
LCS_GDT     S     111     S     111      5    7   17     4    5    5    6    7    7    8   10   11   13   14   15   17   19   21   22   23   27   28   30 
LCS_GDT     K     112     K     112      5    7   17     4    5    5    6    7    7    8    8    9   11   14   14   17   19   21   23   26   28   31   32 
LCS_GDT     F     113     F     113      5    7   17     4    5    5    6    7    7    8   10   10   13   14   15   17   19   21   23   25   28   30   32 
LCS_GDT     D     114     D     114      5    7   17     4    5    5    6    7    7    8   10   11   13   14   15   17   19   21   22   23   27   28   31 
LCS_GDT     R     115     R     115      5    7   17     4    5    5    6    7    7    8   10   11   13   14   16   17   20   22   25   27   31   36   40 
LCS_GDT     S     116     S     116      5    7   17     3    5    6    6    7    7    8   10   13   13   14   16   17   20   22   27   30   35   36   40 
LCS_GDT     I     117     I     117      5    6   17     3    5    6    6    6    6    8    9   11   11   13   14   16   18   20   24   24   27   29   31 
LCS_GDT     L     118     L     118      5    6   17     4    5    6    6    6    6    8   10   11   13   13   14   17   18   21   22   24   27   28   32 
LCS_GDT     G     119     G     119      5    6   17     4    5    6    6    6    6    8   10   13   13   14   16   19   21   22   26   30   35   36   40 
LCS_GDT     I     120     I     120      5    6   17     4    5    6    6    6    6    8    8   11   13   13   15   16   19   22   24   30   32   36   40 
LCS_GDT     F     121     F     121      4    6   17     4    4    6    6    6    6    8   10   11   13   14   15   17   19   21   22   23   31   32   33 
LCS_GDT     F     125     F     125      0    6   17     0    2    5    6    6    7    9   10   11   12   15   16   19   22   26   30   32   33   36   37 
LCS_GDT     S     126     S     126      0    4   14     0    2    3    3    4    5    8    8    9   12   15   16   19   21   26   30   32   33   36   37 
LCS_GDT     K     132     K     132      3    4   10     3    3    3    3    4    6    7    7   12   14   15   16   17   20   21   22   24   27   36   37 
LCS_GDT     M     133     M     133      3    5   10     3    3    3    4    5    6    7    7   12   14   15   16   18   20   26   30   32   39   42   52 
LCS_GDT     S     134     S     134      4    5   10     4    4    4    4    5    5    7    7   14   17   20   23   28   32   35   38   41   48   50   52 
LCS_GDT     I     135     I     135      4    5   10     4    4    4    4    5    6    7    7    9   11   14   16   18   27   32   38   43   46   50   52 
LCS_GDT     R     136     R     136      4    5   10     4    4    4    5   11   17   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     E     137     E     137      4    5   17     4    4    4   10   13   19   20   23   26   29   31   33   35   38   41   43   46   48   50   52 
LCS_GDT     M     138     M     138      0    5   17     0    0    0    4    6    9   18   21   26   29   31   33   34   37   41   43   46   48   50   52 
LCS_GDT     D     139     D     139      3   13   20     3    3    3    3   10   11   12   13   14   15   15   17   24   29   30   31   36   39   41   44 
LCS_GDT     S     140     S     140     10   13   20     8    9   10   11   13   13   13   14   14   17   20   24   28   33   39   42   44   46   50   52 
LCS_GDT     Q     141     Q     141     10   13   20     8    9   10   11   13   13   13   14   14   17   18   25   27   31   33   40   44   45   50   52 
LCS_GDT     I     142     I     142     10   13   20     8    9   10   11   13   13   13   14   14   17   18   25   27   31   33   35   44   45   50   52 
LCS_GDT     E     143     E     143     10   13   20     8    9   10   11   13   13   13   14   14   17   24   30   34   36   39   42   44   46   50   52 
LCS_GDT     L     144     L     144     10   13   20     8    9   10   11   13   13   13   14   14   17   19   26   33   36   39   41   44   46   50   52 
LCS_GDT     Y     145     Y     145     10   13   20     8    9   10   11   13   13   13   14   14   17   18   20   26   29   30   33   37   45   48   51 
LCS_GDT     G     146     G     146     10   13   20     8    9   10   11   13   13   13   14   14   16   18   20   26   29   30   34   39   45   48   51 
LCS_GDT     T     147     T     147     10   13   20     8    9   10   11   13   13   13   14   14   15   18   20   26   29   30   34   39   43   48   51 
LCS_GDT     N     148     N     148     10   13   20     4    9   10   11   13   13   13   14   14   17   18   20   26   29   30   31   36   39   42   45 
LCS_GDT     L     149     L     149     10   13   20     4    9   10   11   13   13   13   14   14   17   18   20   26   29   30   31   36   39   41   44 
LCS_GDT     L     151     L     151      4   13   20     3    3    5   11   13   13   13   14   14   15   16   17   20   25   29   31   36   39   41   44 
LCS_GDT     L     152     L     152      3   13   20     3    3    6   11   13   13   13   14   14   17   18   19   26   29   30   31   36   39   41   44 
LCS_GDT     K     153     K     153      3   13   27     3    3    4    5   13   13   13   14   14   17   18   20   26   29   30   31   36   39   41   44 
LCS_GDT     L     154     L     154      3    3   27     3    3    3    5    7   11   13   14   14   17   18   20   26   29   30   31   36   39   41   44 
LCS_GDT     M     157     M     157      3    4   27     0    3    3    6    7    9   12   14   19   21   21   24   26   29   33   33   36   39   41   44 
LCS_GDT     T     158     T     158      3    4   27     0    3    5    6    7    8   12   14   19   21   21   24   25   26   30   31   36   39   41   44 
LCS_GDT     D     159     D     159      5    6   27     1    4    5    6    7    8    9   14   19   21   21   24   25   26   29   31   33   35   40   44 
LCS_GDT     E     160     E     160      5    6   27     3    4    5    5    6    7    9   10   12   14   17   21   26   29   30   31   36   39   41   44 
LCS_GDT     E     161     E     161      5    6   27     3    4    5    5    6    7   10   11   13   17   18   20   26   29   30   31   36   39   41   44 
LCS_GDT     V     162     V     162      5    7   27     3    4    5    5    7   11   13   17   18   20   20   21   25   29   30   31   36   39   41   44 
LCS_GDT     N     163     N     163      5    7   27     4    4    5    6    7    9   12   15   18   20   20   21   23   24   26   30   32   34   40   42 
LCS_GDT     F     164     F     164      4    7   27     4    4    5    6    7   11   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     Y     165     Y     165      4    7   27     4    4    5    6    7   11   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     A     166     A     166      4    7   27     4    4    5    6    7   11   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     N     167     N     167      4    7   27     4    4    5    6    7   11   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     L     168     L     168      4    7   27     4    4    5    6   10   11   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     K     169     K     169      0   13   27     0    0    3    8   11   12   13   14   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     T     170     T     170     12   13   27     4   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     I     171     I     171     12   13   27     9   11   12   12   12   13   13   14   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     E     172     E     172     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     Q     173     Q     173     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     Y     174     Y     174     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     N     175     N     175     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     D     176     D     176     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   28   32   33   36   37 
LCS_GDT     Y     177     Y     177     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     V     178     V     178     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   33   36   37 
LCS_GDT     R     179     R     179     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   27   29   33   36   37 
LCS_GDT     D     180     D     180     12   13   27     9   11   12   12   12   13   13   17   18   20   20   21   23   24   26   27   29   30   35   37 
LCS_GDT     L     181     L     181     12   13   27     3   11   12   12   12   13   13   17   18   20   20   21   23   24   26   30   32   34   36   39 
LCS_AVERAGE  LCS_A:   9.26  (   5.57    6.95   15.27 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     19     20     22     24     28     32     34     35     35     37     38     39     41     43     46     48     50     52 
GDT PERCENT_CA   8.07  10.56  11.80  12.42  13.66  14.91  17.39  19.88  21.12  21.74  21.74  22.98  23.60  24.22  25.47  26.71  28.57  29.81  31.06  32.30
GDT RMS_LOCAL    0.37   0.58   0.72   1.05   1.27   1.48   2.15   2.40   2.56   2.69   2.69   3.09   3.35   3.60   4.99   5.41   5.73   5.93   6.07   6.28
GDT RMS_ALL_CA  30.12  30.64  30.25  29.21  29.07  29.02  28.24  28.24  28.21  28.18  28.18  28.22  28.41  27.93  25.64  25.78  25.61  25.67  25.48  25.56

#      Molecule1      Molecule2       DISTANCE
LGA    K      21      K      21         19.803
LGA    L      22      L      22         15.265
LGA    I      23      I      23         18.631
LGA    E      24      E      24         15.402
LGA    S      25      S      25          9.188
LGA    L      26      L      26         13.001
LGA    Q      27      Q      27         16.393
LGA    E      28      E      28         12.939
LGA    N      29      N      29          3.916
LGA    E      30      E      30          4.097
LGA    L      31      L      31         10.855
LGA    L      32      L      32          3.339
LGA    N      33      N      33          1.684
LGA    T      34      T      34          0.687
LGA    D      35      D      35          1.458
LGA    E      36      E      36          1.579
LGA    K      37      K      37          0.866
LGA    K      38      K      38          0.890
LGA    K      39      K      39          1.314
LGA    I      40      I      40          1.513
LGA    I      41      I      41          1.163
LGA    D      42      D      42          0.666
LGA    Q      43      Q      43          1.116
LGA    I      44      I      44          1.811
LGA    K      45      K      45          1.686
LGA    T      46      T      46          1.419
LGA    M      47      M      47          2.835
LGA    H      48      H      48          3.763
LGA    D      49      D      49          3.585
LGA    F      50      F      50          5.397
LGA    F      51      F      51          8.469
LGA    K      52      K      52          6.526
LGA    Q      53      Q      53          3.692
LGA    M      54      M      54         10.633
LGA    H      55      H      55         13.556
LGA    T      56      T      56         14.593
LGA    N      57      N      57         18.151
LGA    K      58      K      58         23.791
LGA    G      59      G      59         26.654
LGA    A      60      A      60         23.448
LGA    L      61      L      61         23.787
LGA    D      62      D      62         29.778
LGA    K      63      K      63         31.010
LGA    V      64      V      64         28.480
LGA    L      65      L      65         30.881
LGA    R      66      R      66         36.476
LGA    N      67      N      67         36.476
LGA    Y      68      Y      68         33.962
LGA    M      69      M      69         37.307
LGA    K      70      K      70         43.493
LGA    D      71      D      71         46.833
LGA    Y      72      Y      72         45.712
LGA    R      73      R      73         52.566
LGA    A      74      A      74         52.285
LGA    V      75      V      75         51.917
LGA    I      76      I      76         51.431
LGA    K      77      K      77         52.943
LGA    S      78      S      78         54.460
LGA    I      79      I      79         49.199
LGA    G      80      G      80         37.201
LGA    V      81      V      81         33.377
LGA    D      82      D      82         33.450
LGA    K      83      K      83         29.015
LGA    F      84      F      84         24.212
LGA    K      85      K      85         24.100
LGA    K      86      K      86         22.628
LGA    V      87      V      87         16.050
LGA    Y      88      Y      88         14.176
LGA    R      89      R      89         17.701
LGA    L      90      L      90         13.129
LGA    L      91      L      91          7.416
LGA    E      92      E      92          1.931
LGA    S      93      S      93          3.232
LGA    E      94      E      94          4.315
LGA    T      95      T      95          3.021
LGA    M      96      M      96          1.253
LGA    E      97      E      97          2.898
LGA    L      98      L      98          3.306
LGA    L      99      L      99          2.383
LGA    H     100      H     100          1.729
LGA    A     101      A     101          2.452
LGA    I     102      I     102          3.831
LGA    A     103      A     103          3.569
LGA    E     104      E     104          1.615
LGA    N     105      N     105          7.799
LGA    P     106      P     106         11.514
LGA    N     107      N     107         16.917
LGA    F     108      F     108         19.291
LGA    L     109      L     109         24.940
LGA    F     110      F     110         24.056
LGA    S     111      S     111         26.641
LGA    K     112      K     112         32.218
LGA    F     113      F     113         35.236
LGA    D     114      D     114         33.162
LGA    R     115      R     115         36.345
LGA    S     116      S     116         40.502
LGA    I     117      I     117         38.789
LGA    L     118      L     118         41.388
LGA    G     119      G     119         40.593
LGA    I     120      I     120         36.774
LGA    F     121      F     121         39.003
LGA    F     125      F     125         43.793
LGA    S     126      S     126         43.126
LGA    K     132      K     132         52.121
LGA    M     133      M     133         47.484
LGA    S     134      S     134         46.390
LGA    I     135      I     135         48.681
LGA    R     136      R     136         45.668
LGA    E     137      E     137         39.493
LGA    M     138      M     138         36.446
LGA    D     139      D     139         43.190
LGA    S     140      S     140         38.810
LGA    Q     141      Q     141         38.933
LGA    I     142      I     142         36.632
LGA    E     143      E     143         33.409
LGA    L     144      L     144         33.083
LGA    Y     145      Y     145         32.122
LGA    G     146      G     146         29.664
LGA    T     147      T     147         28.170
LGA    N     148      N     148         29.519
LGA    L     149      L     149         26.713
LGA    L     151      L     151         24.473
LGA    L     152      L     152         24.144
LGA    K     153      K     153         23.976
LGA    L     154      L     154         22.260
LGA    M     157      M     157         18.065
LGA    T     158      T     158         23.072
LGA    D     159      D     159         24.403
LGA    E     160      E     160         30.997
LGA    E     161      E     161         29.326
LGA    V     162      V     162         22.644
LGA    N     163      N     163         26.063
LGA    F     164      F     164         26.754
LGA    Y     165      Y     165         24.914
LGA    A     166      A     166         28.286
LGA    N     167      N     167         33.904
LGA    L     168      L     168         33.545
LGA    K     169      K     169         39.107
LGA    T     170      T     170         38.020
LGA    I     171      I     171         35.726
LGA    E     172      E     172         39.283
LGA    Q     173      Q     173         35.802
LGA    Y     174      Y     174         29.711
LGA    N     175      N     175         31.886
LGA    D     176      D     176         33.252
LGA    Y     177      Y     177         26.943
LGA    V     178      V     178         24.413
LGA    R     179      R     179         29.214
LGA    D     180      D     180         26.782
LGA    L     181      L     181         21.411

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  176  161    4.0     32    2.40    17.391    14.974     1.281

LGA_LOCAL      RMSD =  2.397  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 28.184  Number of atoms =  150 
Std_ALL_ATOMS  RMSD = 20.596  (standard rmsd on all 150 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.330502 * X  +   0.914321 * Y  +   0.234064 * Z  +  69.786293
  Y_new =   0.699059 * X  +  -0.403770 * Y  +   0.590157 * Z  +  52.217529
  Z_new =   0.634101 * X  +  -0.031424 * Y  +  -0.772611 * Z  +  89.413872 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.100943    0.040650  [ DEG:  -177.6709      2.3291 ]
  Theta =  -0.686845   -2.454747  [ DEG:   -39.3533   -140.6467 ]
  Phi   =   1.129160   -2.012433  [ DEG:    64.6961   -115.3039 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0287TS383_4                                  
REMARK     2: T0287.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0287TS383_4.T0287.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  176  161   4.0   32   2.40  14.974    20.60
REMARK  ---------------------------------------------------------- 
MOLECULE T0287TS383_4
PFRMAT TS
TARGET T0287
MODEL 4
PARENT 1rkpA
ATOM      1  CA  ARG     6     116.554 136.249  65.148  1.00  0.00
ATOM      2  CA  LYS     7     116.722 132.504  65.713  1.00  0.00
ATOM      3  CA  LEU     8     114.860 132.028  62.425  1.00  0.00
ATOM      4  CA  PHE     9     117.294 134.349  60.658  1.00  0.00
ATOM      5  CA  SER    10     120.234 132.322  61.991  1.00  0.00
ATOM      6  CA  MET    11     118.739 128.926  61.160  1.00  0.00
ATOM      7  CA  ILE    12     117.634 129.972  57.664  1.00  0.00
ATOM      8  CA  ALA    13     121.079 131.402  56.848  1.00  0.00
ATOM      9  CA  ASP    14     123.045 128.496  58.308  1.00  0.00
ATOM     10  CA  SER    15     127.768 126.924  65.847  1.00  0.00
ATOM     11  CA  LYS    16     126.714 126.132  62.298  1.00  0.00
ATOM     12  CA  ASP    17     124.591 125.875  56.070  1.00  0.00
ATOM     13  CA  LYS    18     123.155 122.352  56.535  1.00  0.00
ATOM     14  CA  LYS    19     125.894 119.748  57.036  1.00  0.00
ATOM     15  CA  GLU    20     125.558 116.260  55.537  1.00  0.00
ATOM     16  CA  LYS    21     123.753 113.361  57.196  1.00  0.00
ATOM     17  CA  LEU    22     127.109 111.630  57.707  1.00  0.00
ATOM     18  CA  ILE    23     128.587 114.695  59.411  1.00  0.00
ATOM     19  CA  GLU    24     125.534 114.958  61.694  1.00  0.00
ATOM     20  CA  SER    25     125.576 111.247  62.586  1.00  0.00
ATOM     21  CA  LEU    26     121.786 111.103  62.171  1.00  0.00
ATOM     22  CA  GLN    27     121.922 107.779  60.327  1.00  0.00
ATOM     23  CA  GLU    28     123.332 106.046  63.433  1.00  0.00
ATOM     24  CA  ASN    29     122.784 111.134  70.905  1.00  0.00
ATOM     25  CA  GLU    30     126.367 117.703  72.823  1.00  0.00
ATOM     26  CA  LEU    31     127.201 123.415  67.824  1.00  0.00
ATOM     27  CA  LEU    32     124.025 119.586  70.460  1.00  0.00
ATOM     28  CA  ASN    33     122.525 123.070  70.752  1.00  0.00
ATOM     29  CA  THR    34     118.928 123.772  69.736  1.00  0.00
ATOM     30  CA  ASP    35     120.190 125.312  66.492  1.00  0.00
ATOM     31  CA  GLU    36     122.105 122.120  65.712  1.00  0.00
ATOM     32  CA  LYS    37     119.055 119.912  66.296  1.00  0.00
ATOM     33  CA  LYS    38     117.083 122.145  63.921  1.00  0.00
ATOM     34  CA  LYS    39     119.788 121.691  61.264  1.00  0.00
ATOM     35  CA  ILE    40     119.634 117.924  61.813  1.00  0.00
ATOM     36  CA  ILE    41     115.850 118.063  61.338  1.00  0.00
ATOM     37  CA  ASP    42     116.265 119.942  58.048  1.00  0.00
ATOM     38  CA  GLN    43     118.753 117.282  56.928  1.00  0.00
ATOM     39  CA  ILE    44     116.211 114.573  57.717  1.00  0.00
ATOM     40  CA  LYS    45     113.569 116.225  55.504  1.00  0.00
ATOM     41  CA  THR    46     116.165 116.897  52.820  1.00  0.00
ATOM     42  CA  MET    47     117.703 113.436  52.624  1.00  0.00
ATOM     43  CA  HIS    48     114.302 111.730  52.696  1.00  0.00
ATOM     44  CA  ASP    49     113.632 113.843  49.579  1.00  0.00
ATOM     45  CA  PHE    50     110.639 115.517  51.238  1.00  0.00
ATOM     46  CA  PHE    51     111.911 119.019  50.504  1.00  0.00
ATOM     47  CA  LYS    52     112.197 118.147  46.795  1.00  0.00
ATOM     48  CA  GLN    53     109.181 115.877  46.333  1.00  0.00
ATOM     49  CA  MET    54     106.830 118.351  48.006  1.00  0.00
ATOM     50  CA  HIS    55     108.530 121.598  47.038  1.00  0.00
ATOM     51  CA  THR    56     108.982 122.970  50.547  1.00  0.00
ATOM     52  CA  ASN    57     110.379 126.486  50.759  1.00  0.00
ATOM     53  CA  LYS    58     113.457 126.712  52.984  1.00  0.00
ATOM     54  CA  GLY    59     112.180 129.540  55.169  1.00  0.00
ATOM     55  CA  ALA    60     108.834 127.771  55.677  1.00  0.00
ATOM     56  CA  LEU    61     110.428 124.492  56.773  1.00  0.00
ATOM     57  CA  ASP    62     112.739 126.436  59.114  1.00  0.00
ATOM     58  CA  LYS    63     109.883 128.403  60.647  1.00  0.00
ATOM     59  CA  VAL    64     107.851 125.195  61.051  1.00  0.00
ATOM     60  CA  LEU    65     110.701 123.373  62.796  1.00  0.00
ATOM     61  CA  ARG    66     111.139 126.317  65.155  1.00  0.00
ATOM     62  CA  ASN    67     107.399 126.503  65.929  1.00  0.00
ATOM     63  CA  TYR    68     107.417 122.772  66.682  1.00  0.00
ATOM     64  CA  MET    69     110.432 123.118  68.975  1.00  0.00
ATOM     65  CA  LYS    70     108.897 126.163  70.667  1.00  0.00
ATOM     66  CA  ASP    71     105.764 124.181  71.505  1.00  0.00
ATOM     67  CA  TYR    72     107.449 121.610  73.731  1.00  0.00
ATOM     68  CA  ARG    73     108.110 122.625  77.354  1.00  0.00
ATOM     69  CA  ALA    74     114.224 124.516  77.870  1.00  0.00
ATOM     70  CA  VAL    75     113.922 123.920  81.611  1.00  0.00
ATOM     71  CA  ILE    76     112.982 120.269  81.012  1.00  0.00
ATOM     72  CA  LYS    77     111.781 122.509  78.309  1.00  0.00
ATOM     73  CA  SER    78     110.876 122.483  82.006  1.00  0.00
ATOM     74  CA  ILE    79     109.503 118.948  81.497  1.00  0.00
ATOM     75  CA  GLY    80     110.672 114.495  69.929  1.00  0.00
ATOM     76  CA  VAL    81     113.835 115.275  67.975  1.00  0.00
ATOM     77  CA  ASP    82     115.339 111.949  69.054  1.00  0.00
ATOM     78  CA  LYS    83     112.147 110.100  68.074  1.00  0.00
ATOM     79  CA  PHE    84     112.379 111.616  64.589  1.00  0.00
ATOM     80  CA  LYS    85     116.089 110.840  64.311  1.00  0.00
ATOM     81  CA  LYS    86     115.334 107.204  65.126  1.00  0.00
ATOM     82  CA  VAL    87     112.602 107.256  62.451  1.00  0.00
ATOM     83  CA  TYR    88     115.159 108.607  59.986  1.00  0.00
ATOM     84  CA  ARG    89     117.685 105.938  60.997  1.00  0.00
ATOM     85  CA  LEU    90     115.074 103.191  60.752  1.00  0.00
ATOM     86  CA  LEU    91     114.185 104.452  57.255  1.00  0.00
ATOM     87  CA  GLU    92     106.587 109.225  50.047  1.00  0.00
ATOM     88  CA  SER    93     103.373 110.388  51.727  1.00  0.00
ATOM     89  CA  GLU    94     103.784 107.810  54.492  1.00  0.00
ATOM     90  CA  THR    95     107.407 108.859  55.065  1.00  0.00
ATOM     91  CA  MET    96     106.389 112.533  55.106  1.00  0.00
ATOM     92  CA  GLU    97     103.617 111.825  57.622  1.00  0.00
ATOM     93  CA  LEU    98     105.834 109.674  59.858  1.00  0.00
ATOM     94  CA  LEU    99     108.600 112.276  60.103  1.00  0.00
ATOM     95  CA  HIS   100     106.130 115.034  60.963  1.00  0.00
ATOM     96  CA  ALA   101     104.312 112.746  63.428  1.00  0.00
ATOM     97  CA  ILE   102     107.550 111.694  65.140  1.00  0.00
ATOM     98  CA  ALA   103     108.508 115.355  65.602  1.00  0.00
ATOM     99  CA  GLU   104     104.971 116.350  66.671  1.00  0.00
ATOM    100  CA  ASN   105     102.711 120.709  74.515  1.00  0.00
ATOM    101  CA  PRO   106     103.237 118.914  80.496  1.00  0.00
ATOM    102  CA  ASN   107     102.190 113.671  86.412  1.00  0.00
ATOM    103  CA  PHE   108     100.438 116.764  85.105  1.00  0.00
ATOM    104  CA  LEU   109      96.626 116.597  84.863  1.00  0.00
ATOM    105  CA  PHE   110      96.099 120.057  83.358  1.00  0.00
ATOM    106  CA  SER   111      95.459 119.181  79.700  1.00  0.00
ATOM    107  CA  LYS   112      93.006 116.461  80.707  1.00  0.00
ATOM    108  CA  PHE   113      91.162 118.464  83.380  1.00  0.00
ATOM    109  CA  ASP   114      90.901 121.487  81.086  1.00  0.00
ATOM    110  CA  ARG   115      88.547 119.520  78.826  1.00  0.00
ATOM    111  CA  SER   116      84.918 118.391  79.421  1.00  0.00
ATOM    112  CA  ILE   117      85.355 116.757  82.941  1.00  0.00
ATOM    113  CA  LEU   118      84.302 113.165  82.231  1.00  0.00
ATOM    114  CA  GLY   119      86.179 114.043  79.035  1.00  0.00
ATOM    115  CA  ILE   120      88.496 111.075  79.646  1.00  0.00
ATOM    116  CA  PHE   121      86.097 108.384  78.382  1.00  0.00
ATOM    117  CA  PHE   125      84.469 110.180  75.429  1.00  0.00
ATOM    118  CA  SER   126      87.456 111.351  73.387  1.00  0.00
ATOM    119  CA  LYS   132      92.686 111.396  81.745  1.00  0.00
ATOM    120  CA  MET   133      93.168 109.661  78.385  1.00  0.00
ATOM    121  CA  SER   134      96.625 110.025  76.774  1.00  0.00
ATOM    122  CA  ILE   135      96.646 113.539  78.254  1.00  0.00
ATOM    123  CA  ARG   136     100.163 114.470  77.141  1.00  0.00
ATOM    124  CA  GLU   137     100.161 112.629  73.820  1.00  0.00
ATOM    125  CA  MET   138      99.448 116.444  68.645  1.00  0.00
ATOM    126  CA  ASP   139      89.875 108.600  74.481  1.00  0.00
ATOM    127  CA  SER   140      93.670 108.850  74.046  1.00  0.00
ATOM    128  CA  GLN   141      93.007 112.388  75.213  1.00  0.00
ATOM    129  CA  ILE   142      96.667 113.462  75.333  1.00  0.00
ATOM    130  CA  GLU   143      97.419 112.146  71.845  1.00  0.00
ATOM    131  CA  LEU   144      94.405 113.969  70.377  1.00  0.00
ATOM    132  CA  TYR   145      95.751 117.122  71.995  1.00  0.00
ATOM    133  CA  GLY   146      99.209 116.502  70.529  1.00  0.00
ATOM    134  CA  THR   147      97.642 116.080  67.104  1.00  0.00
ATOM    135  CA  ASN   148      95.569 119.251  67.449  1.00  0.00
ATOM    136  CA  LEU   149      98.799 121.067  68.315  1.00  0.00
ATOM    137  CA  LEU   151     100.504 119.509  65.291  1.00  0.00
ATOM    138  CA  LEU   152      97.638 120.582  63.015  1.00  0.00
ATOM    139  CA  LYS   153      97.539 124.166  64.327  1.00  0.00
ATOM    140  CA  LEU   154     101.253 124.552  63.608  1.00  0.00
ATOM    141  CA  MET   157     100.790 123.043  60.134  1.00  0.00
ATOM    142  CA  THR   158      98.145 125.687  59.389  1.00  0.00
ATOM    143  CA  ASP   159      99.944 128.658  60.963  1.00  0.00
ATOM    144  CA  GLU   160     100.950 131.384  58.502  1.00  0.00
ATOM    145  CA  GLU   161     104.467 130.935  57.155  1.00  0.00
ATOM    146  CA  VAL   162     104.622 127.403  58.598  1.00  0.00
ATOM    147  CA  ASN   163     102.661 125.473  55.966  1.00  0.00
ATOM    148  CA  PHE   164     105.170 122.836  54.872  1.00  0.00
ATOM    149  CA  TYR   165     102.336 120.828  53.301  1.00  0.00
ATOM    150  CA  ALA   166     101.054 123.658  51.065  1.00  0.00
ATOM    151  CA  ASN   167     102.720 121.906  48.136  1.00  0.00
ATOM    152  CA  LEU   168     100.504 118.826  48.347  1.00  0.00
ATOM    153  CA  LYS   169      93.844 114.722  48.143  1.00  0.00
ATOM    154  CA  THR   170      97.505 114.209  49.057  1.00  0.00
ATOM    155  CA  ILE   171      96.924 116.473  52.048  1.00  0.00
ATOM    156  CA  GLU   172      93.893 114.640  53.441  1.00  0.00
ATOM    157  CA  GLN   173      95.763 111.336  53.130  1.00  0.00
ATOM    158  CA  TYR   174      98.865 112.695  54.859  1.00  0.00
ATOM    159  CA  ASN   175      96.861 114.316  57.676  1.00  0.00
ATOM    160  CA  ASP   176      95.074 110.992  58.224  1.00  0.00
ATOM    161  CA  TYR   177      98.335 109.053  58.444  1.00  0.00
ATOM    162  CA  VAL   178      99.792 111.723  60.748  1.00  0.00
ATOM    163  CA  ARG   179      96.777 111.551  63.036  1.00  0.00
ATOM    164  CA  ASP   180      96.858 107.742  63.227  1.00  0.00
ATOM    165  CA  LEU   181     100.627 107.878  63.721  1.00  0.00
ATOM    166  CA  LEU   182     100.285 110.232  66.678  1.00  0.00
ATOM    167  CA  MET   183      97.336 108.362  68.218  1.00  0.00
ATOM    168  CA  LYS   184      99.464 105.226  67.948  1.00  0.00
ATOM    169  CA  PHE   185     101.942 106.711  70.425  1.00  0.00
ATOM    170  CA  ASP   186      99.316 106.089  73.115  1.00  0.00
ATOM    171  CA  LEU   187     100.812 103.010  74.789  1.00  0.00
ATOM    172  CA  GLU   188      97.273 101.881  75.608  1.00  0.00
ATOM    173  CA  LYS   189      96.700 101.535  71.867  1.00  0.00
ATOM    174  CA  TYR   190     100.067  99.836  71.361  1.00  0.00
ATOM    175  CA  MET   191      99.267  97.156  73.943  1.00  0.00
ATOM    176  CA  LYS   192      95.832  96.719  72.383  1.00  0.00
TER
END
