
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0298TS168_2-D1
# Molecule2: number of CA atoms  148 ( 1074),  selected  148 , name T0298_D1.pdb
# PARAMETERS: T0298TS168_2-D1.T0298_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   147         3 - 335         4.91     5.11
  LCS_AVERAGE:     98.83

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36         5 - 40          1.99     5.71
  LCS_AVERAGE:     12.20

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       319 - 334         0.66    19.64
  LCS_AVERAGE:      5.07

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     Q       3     Q       3      0   29  147     4    6   12   24   39   56   72   86   97  107  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     P       4     P       4      6   29  147     2    7   16   33   49   62   76   91  101  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L       5     L       5      6   36  147     3   21   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     N       6     N       6      6   36  147     3    8   27   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V       7     V       7      6   36  147     3   17   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A       8     A       8      6   36  147     3   10   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V       9     V       9      6   36  147     3    9   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      10     V      10      6   36  147     3   20   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      11     G      11      6   36  147     4   12   27   42   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      12     A      12      6   36  147     4    5    9   27   50   64   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     T      13     T      13     14   36  147     4    5   18   34   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      14     G      14     15   36  147    12   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      15     S      15     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      16     V      16     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      17     G      17     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     E      18     E      18     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      19     A      19     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      20     L      20     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      21     V      21     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      22     G      22     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      23     L      23     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      24     L      24     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     D      25     D      25     15   36  147    12   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     E      26     E      26     15   36  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R      27     R      27     15   36  147     3    4    8   30   50   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     D      28     D      28     15   36  147     4   19   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     F      29     F      29      3   36  147     3    7   17   29   51   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     P      30     P      30      3   36  147     8   16   23   40   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      31     L      31      3   36  147     3   15   23   39   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     H      32     H      32      3   36  147     3    3    3   12   28   58   74   86   97  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R      33     R      33      4   36  147     0    3    5    9   18   27   38   62   82   93  107  116  123  128  132  137  139  141  143  144 
LCS_GDT     L      34     L      34      4   36  147     3    6    9   24   49   63   78   87   98  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     H      35     H      35      4   36  147    11   18   29   43   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      36     L      36      4   36  147     4   11   31   43   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      37     L      37      4   36  147     4   16   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      38     A      38      4   36  147     4   16   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      39     S      39      4   36  147     3    4   27   41   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      40     A      40      4   36  147     3   18   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     E      41     E      41      4    8  147     3    6   17   33   47   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      42     S      42      4    8  147     3    5    9   19   29   37   51   72   90   99  112  119  124  131  134  137  139  141  143  144 
LCS_GDT     A      43     A      43      4    7  147     3    4    4    5    6    9   12   41   56   84   97  111  123  127  132  137  139  141  143  144 
LCS_GDT     G      44     G      44      5    7  147     3    4    6    8   13   40   58   85  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     Q      45     Q      45      5    7  147     3    8   16   27   41   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R      46     R      46      5    7  147     3    7   16   27   43   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     M      47     M      47      5    8  147     3    7   14   24   41   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      48     G      48      5    8  147     3    7   14   26   43   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     F      49     F      49      4   10  147     3    5    9   20   35   55   76   90  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      50     A      50      3   10  147     3    3    6    8   10   16   38   45   68   84   99  111  117  123  130  132  135  140  140  141 
LCS_GDT     E      51     E      51      7   11  147     3    8   15   27   43   61   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      52     S      52      7   11  147     3    8   15   30   49   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      53     S      53      7   11  147     3    6   12   20   39   59   77   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      54     L      54      7   11  147     4    6   12   27   41   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R      55     R      55      7   11  147     4    7   14   27   41   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      56     V      56      7   11  147     4    7   16   27   41   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      57     G      57      7   11  147     4    7   16   32   49   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     D      58     D      58      5   11  147     4    7   13   22   39   55   75   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      59     V      59      4   11  147     4    5   11   16   27   36   55   70   88  103  114  120  124  131  134  137  139  141  143  144 
LCS_GDT     D      60     D      60      4   11  147     4    4    8   16   25   35   47   55   79   94  106  115  124  131  134  137  139  141  143  144 
LCS_GDT     S      61     S      61      4   11  147     3    3    7   15   20   31   42   54   77   90  106  115  124  131  134  137  139  141  143  144 
LCS_GDT     F      62     F      62      4    9  147     3    3    6   15   20   31   47   63   82   99  114  120  124  131  134  137  139  141  143  144 
LCS_GDT     D      63     D      63      4   11  147     3   14   23   34   50   63   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     F      64     F      64      4   11  147     3    4    9   34   50   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      65     S      65      4   11  147     3    8   23   38   50   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      66     S      66      7   11  147     4   15   24   35   48   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      67     V      67      7   11  147     5   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      68     G      68      7   11  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L      69     L      69      7   11  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      70     A      70      7   11  147     4   19   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     F      71     F      71      7   11  147     4    9   27   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     F      72     F      72      7   11  147     4    7   12   30   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      73     A      73      7   11  147     3   10   23   36   53   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      74     A      74      4    9  147     3    4    5   16   20   31   46   65   81   95  109  117  124  131  134  137  139  141  143  144 
LCS_GDT     A      75     A      75      4    6  147     3    4    5    6   10   26   32   40   59   83  100  110  120  129  132  137  139  141  143  144 
LCS_GDT     A      76     A      76      4    7  147     4   11   19   35   51   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     E      77     E      77      7   13  147     6   15   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      78     V      78      7   13  147     6    6    8   12   18   33   56   87  100  107  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      79     S      79      7   13  147     6    6    9   18   30   47   68   83  101  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R      80     R      80      9   13  147     6    6    8   18   38   53   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      81     A      81      9   13  147     6   13   24   37   53   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     H      82     H      82      9   13  147     7    7   11   30   46   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      83     A      83      9   13  147     7    7   11   19   41   59   76   87  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     E      84     E      84      9   13  147     7    7   12   41   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R      85     R      85      9   13  147     7   10   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      86     A      86      9   13  147     7    7    8   12   27   49   76   88  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R      87     R      87      9   13  147     7    7   11   13   38   62   78   88  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      88     A      88      9   13  147     7   17   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      89     A      89      4   13  147     4    7   21   38   53   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      90     G      90      4   13  147     4   20   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     C      91     C      91      4   13  147     0    9   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      92     S      92      4   13  147     3    6   11   27   49   64   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V      93     V      93      4   13  147     3    4   15   27   50   64   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     I      94     I      94      4   13  147     3    4    8   14   26   33   43   53   77   92  105  114  124  131  134  137  139  141  143  144 
LCS_GDT     D      95     D      95      4   13  147     3    6   11   19   29   41   52   72   87   99  109  119  124  131  134  137  139  141  143  144 
LCS_GDT     L      96     L      96      3   12  147     3    6   15   21   33   50   72   87  100  110  114  120  124  131  134  137  139  141  143  144 
LCS_GDT     S      97     S      97      3   11  147     5   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G      98     G      98      3   11  147     0    5   30   41   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A      99     A      99      3   11  147     3    3   27   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L     100     L     100      4   11  147     4   15   27   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     E     101     E     101      4    8  147     3    7   27   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     P     102     P     102      4    6  147     0    7   22   41   51   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S     103     S     103      4    6  147     2   10   24   41   51   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V     104     V     104      4    8  147     0    3   10   23   41   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A     105     A     105      7    8  147     5    7    7    8   18   38   60   79   93  108  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     P     106     P     106      7    8  147     5    7   14   16   25   34   54   64   78   95  107  118  124  128  132  137  139  141  143  144 
LCS_GDT     P     107     P     107      7    8  147     5    7    7   11   22   31   39   58   72   88   97  107  120  128  132  136  138  141  143  143 
LCS_GDT     V     108     V     108      7    8  147     5    9   14   24   35   61   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     M     109     M     109      7    8  147     4    7    7   24   35   61   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V     110     V     110      7   11  147     5    7   10   33   45   59   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S     111     S     111      7   11  147     4    7   17   24   38   62   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V     112     V     112      5   11  147     9   16   26   39   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     N     113     N     113      7   11  147     4   13   30   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A     114     A     114      7   11  147     4    5   15   35   51   63   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     E     115     E     115      7   11  147     4    7   23   41   51   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R     116     R     116      7   11  147     4   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L     117     L     117      7   11  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A     118     A     118      7   11  147    11   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S     119     S     119      7   11  147    13   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     Q     120     Q     120      5   11  147     3    6   14   37   51   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A     121     A     121      3    6  147     3    3    4    5   14   22   41   49   65   87   92  107  119  129  134  137  139  141  143  144 
LCS_GDT     A     122     A     122      3    6  147     3    3    4    5    6    8   10   13   15   20   58   66   92  106  116  129  138  139  141  144 
LCS_GDT     P     123     P     123      3    6  147     3    3    4    5    7    8   12   13   35   44   58   66   92  106  116  129  138  139  141  144 
LCS_GDT     F     124     F     124      4    6  147     3    4    4    5   18   41   49   62   77   95  111  117  124  131  134  137  139  141  143  144 
LCS_GDT     L     125     L     125      4    6  147    15   22   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     L     126     L     126      4    5  147     3    6   23   39   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     S     127     S     127      4    5  147     2    5    8   12   21   33   60   71   88  106  114  120  124  131  134  137  139  141  143  144 
LCS_GDT     S     128     S     128      3    7  147     9   16   31   44   56   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     P     129     P     129      3    7  147     0    3   22   30   48   64   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V     316     V     316      5   20  147     3    4   11   17   28   49   70   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     R     317     R     317      5   20  147     3    4    7   17   28   48   70   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     K     318     K     318      5   20  147     3    5   12   27   42   63   79   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G     319     G     319     16   20  147     3   11   16   17   31   53   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A     320     A     320     16   20  147     6   15   16   17   20   34   51   77   97  108  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A     321     A     321     16   20  147    13   15   16   17   20   29   57   79   94  105  113  120  124  131  134  137  139  141  143  144 
LCS_GDT     L     322     L     322     16   20  147    13   15   16   17   26   53   71   87   95  108  114  120  124  131  134  137  139  141  143  144 
LCS_GDT     N     323     N     323     16   20  147    13   15   16   17   34   60   78   91  102  110  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     A     324     A     324     16   20  147    13   15   16   17   20   35   65   79   94  106  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     V     325     V     325     16   20  147    13   15   16   17   19   24   31   43   68   84  100  113  122  129  134  137  139  141  143  144 
LCS_GDT     L     326     L     326     16   20  147    13   15   16   17   19   24   31   57   87   96  106  116  124  131  134  137  139  141  143  144 
LCS_GDT     L     327     L     327     16   20  147    13   15   16   17   22   50   69   85   99  108  115  120  124  131  134  137  139  141  143  144 
LCS_GDT     G     328     G     328     16   20  147    13   15   16   17   19   24   26   27   40   68   94  107  121  129  134  137  139  141  143  144 
LCS_GDT     E     329     E     329     16   20  147    13   15   16   17   19   24   26   27   31   42   72   92  108  119  129  135  139  141  143  144 
LCS_GDT     L     330     L     330     16   20  147    13   15   16   17   19   24   31   43   66   84   99  113  123  131  134  137  139  141  143  144 
LCS_GDT     L     331     L     331     16   20  147    13   15   16   17   19   24   26   37   58   79   99  115  123  131  134  137  139  141  143  144 
LCS_GDT     I     332     I     332     16   20  147    13   15   16   17   19   24   26   27   31   35   47   57   69   96  119  131  134  139  143  144 
LCS_GDT     K     333     K     333     16   20  147    13   15   16   17   19   24   26   26   31   36   49   60   76   98  111  121  132  138  143  144 
LCS_GDT     H     334     H     334     16   20  147     3   15   16   17   19   23   26   35   58   78   96  107  121  129  134  137  139  141  143  144 
LCS_GDT     Y     335     Y     335      4   20  147     3    4    4    5    8   16   22   26   31   35   40   43   55   67   80  113  132  136  141  143 
LCS_GDT     L     336     L     336      4   19   39     3    4    4    5    5   13   17   22   25   30   33   37   39   43   55   60   64   74   82   96 
LCS_AVERAGE  LCS_A:  38.70  (   5.07   12.20   98.83 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     22     31     44     56     64     79     91    102    110    115    120    124    131    134    137    139    141    143    144 
GDT PERCENT_CA  10.14  14.86  20.95  29.73  37.84  43.24  53.38  61.49  68.92  74.32  77.70  81.08  83.78  88.51  90.54  92.57  93.92  95.27  96.62  97.30
GDT RMS_LOCAL    0.34   0.59   0.98   1.30   1.63   1.88   2.35   2.63   2.90   3.10   3.26   3.42   3.58   3.91   4.07   4.16   4.28   4.40   4.59   4.71
GDT RMS_ALL_CA   5.35   5.37   5.32   5.45   5.49   5.47   5.29   5.28   5.30   5.28   5.27   5.25   5.25   5.18   5.15   5.18   5.15   5.15   5.12   5.11

#      Molecule1      Molecule2       DISTANCE
LGA    Q       3      Q       3          6.079
LGA    P       4      P       4          4.546
LGA    L       5      L       5          2.482
LGA    N       6      N       6          3.201
LGA    V       7      V       7          2.493
LGA    A       8      A       8          1.231
LGA    V       9      V       9          1.245
LGA    V      10      V      10          2.229
LGA    G      11      G      11          2.500
LGA    A      12      A      12          3.990
LGA    T      13      T      13          3.386
LGA    G      14      G      14          1.703
LGA    S      15      S      15          1.221
LGA    V      16      V      16          1.180
LGA    G      17      G      17          1.324
LGA    E      18      E      18          1.611
LGA    A      19      A      19          1.553
LGA    L      20      L      20          1.369
LGA    V      21      V      21          1.797
LGA    G      22      G      22          2.055
LGA    L      23      L      23          1.804
LGA    L      24      L      24          1.855
LGA    D      25      D      25          2.037
LGA    E      26      E      26          1.511
LGA    R      27      R      27          3.377
LGA    D      28      D      28          0.945
LGA    F      29      F      29          3.680
LGA    P      30      P      30          2.992
LGA    L      31      L      31          2.986
LGA    H      32      H      32          5.392
LGA    R      33      R      33          7.595
LGA    L      34      L      34          4.783
LGA    H      35      H      35          2.720
LGA    L      36      L      36          0.827
LGA    L      37      L      37          0.383
LGA    A      38      A      38          0.158
LGA    S      39      S      39          3.385
LGA    A      40      A      40          2.132
LGA    E      41      E      41          2.965
LGA    S      42      S      42          7.366
LGA    A      43      A      43          7.260
LGA    G      44      G      44          5.238
LGA    Q      45      Q      45          4.257
LGA    R      46      R      46          3.670
LGA    M      47      M      47          3.864
LGA    G      48      G      48          3.923
LGA    F      49      F      49          4.703
LGA    A      50      A      50          9.438
LGA    E      51      E      51          4.479
LGA    S      52      S      52          3.237
LGA    S      53      S      53          4.538
LGA    L      54      L      54          3.425
LGA    R      55      R      55          3.991
LGA    V      56      V      56          3.253
LGA    G      57      G      57          2.599
LGA    D      58      D      58          4.893
LGA    V      59      V      59          6.347
LGA    D      60      D      60          8.108
LGA    S      61      S      61          8.535
LGA    F      62      F      62          6.469
LGA    D      63      D      63          3.839
LGA    F      64      F      64          2.415
LGA    S      65      S      65          3.016
LGA    S      66      S      66          3.022
LGA    V      67      V      67          2.011
LGA    G      68      G      68          1.730
LGA    L      69      L      69          1.624
LGA    A      70      A      70          2.510
LGA    F      71      F      71          2.790
LGA    F      72      F      72          3.239
LGA    A      73      A      73          3.604
LGA    A      74      A      74          6.933
LGA    A      75      A      75          8.362
LGA    A      76      A      76          3.220
LGA    E      77      E      77          3.019
LGA    V      78      V      78          5.309
LGA    S      79      S      79          4.816
LGA    R      80      R      80          3.928
LGA    A      81      A      81          3.648
LGA    H      82      H      82          3.219
LGA    A      83      A      83          4.238
LGA    E      84      E      84          3.173
LGA    R      85      R      85          2.443
LGA    A      86      A      86          4.641
LGA    R      87      R      87          4.526
LGA    A      88      A      88          2.225
LGA    A      89      A      89          1.639
LGA    G      90      G      90          1.912
LGA    C      91      C      91          2.515
LGA    S      92      S      92          3.956
LGA    V      93      V      93          3.875
LGA    I      94      I      94          6.705
LGA    D      95      D      95          6.318
LGA    L      96      L      96          5.172
LGA    S      97      S      97          2.123
LGA    G      98      G      98          2.992
LGA    A      99      A      99          3.452
LGA    L     100      L     100          3.323
LGA    E     101      E     101          2.674
LGA    P     102      P     102          2.660
LGA    S     103      S     103          2.544
LGA    V     104      V     104          3.049
LGA    A     105      A     105          5.513
LGA    P     106      P     106          7.487
LGA    P     107      P     107          8.933
LGA    V     108      V     108          4.260
LGA    M     109      M     109          4.417
LGA    V     110      V     110          3.815
LGA    S     111      S     111          3.842
LGA    V     112      V     112          2.159
LGA    N     113      N     113          2.064
LGA    A     114      A     114          3.235
LGA    E     115      E     115          2.450
LGA    R     116      R     116          0.728
LGA    L     117      L     117          1.141
LGA    A     118      A     118          0.444
LGA    S     119      S     119          0.974
LGA    Q     120      Q     120          2.948
LGA    A     121      A     121          9.059
LGA    A     122      A     122         12.355
LGA    P     123      P     123         12.082
LGA    F     124      F     124          6.988
LGA    L     125      L     125          0.973
LGA    L     126      L     126          2.782
LGA    S     127      S     127          5.763
LGA    S     128      S     128          1.130
LGA    P     129      P     129          2.378
LGA    V     316      V     316          4.355
LGA    R     317      R     317          4.636
LGA    K     318      K     318          2.789
LGA    G     319      G     319          3.903
LGA    A     320      A     320          5.629
LGA    A     321      A     321          6.297
LGA    L     322      L     322          5.791
LGA    N     323      N     323          4.404
LGA    A     324      A     324          5.779
LGA    V     325      V     325          8.179
LGA    L     326      L     326          7.467
LGA    L     327      L     327          5.259
LGA    G     328      G     328          8.648
LGA    E     329      E     329         10.790
LGA    L     330      L     330          8.639
LGA    L     331      L     331          8.242
LGA    I     332      I     332         12.522
LGA    K     333      K     333         13.263
LGA    H     334      H     334         10.144
LGA    Y     335      Y     335         13.532
LGA    L     336      L     336         19.173

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     91    2.63    49.662    42.799     3.338

LGA_LOCAL      RMSD =  2.626  Number of atoms =   91  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.230  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  5.104  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.878907 * X  +   0.096231 * Y  +   0.467186 * Z  + -14.350327
  Y_new =   0.175162 * X  +  -0.845894 * Y  +   0.503767 * Z  +  72.157516
  Z_new =   0.443668 * X  +   0.524598 * Y  +   0.726606 * Z  +   1.792283 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.625329   -2.516264  [ DEG:    35.8287   -144.1713 ]
  Theta =  -0.459687   -2.681906  [ DEG:   -26.3381   -153.6619 ]
  Phi   =   2.944875   -0.196718  [ DEG:   168.7289    -11.2711 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0298TS168_2-D1                               
REMARK     2: T0298_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0298TS168_2-D1.T0298_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   91   2.63  42.799     5.10
REMARK  ---------------------------------------------------------- 
MOLECULE T0298TS168_2-D1
PFRMAT TS
TARGET T0298
MODEL 2
PARENT N/A
ATOM      3  CA  GLN     3     -38.682  71.487  -9.586  1.00 25.00           C
ATOM      4  CA  PRO     4     -35.439  69.710 -10.249  1.00 25.00           C
ATOM      5  CA  LEU     5     -32.043  68.164 -10.764  1.00 25.00           C
ATOM      6  CA  ASN     6     -28.928  66.041 -11.290  1.00 25.00           C
ATOM      7  CA  VAL     7     -25.200  65.356 -10.960  1.00 25.00           C
ATOM      8  CA  ALA     8     -22.475  64.807 -13.486  1.00 25.00           C
ATOM      9  CA  VAL     9     -19.908  63.665 -10.859  1.00 25.00           C
ATOM     10  CA  VAL    10     -16.096  63.523 -10.511  1.00 25.00           C
ATOM     11  CA  GLY    11     -15.458  60.461  -8.270  1.00 25.00           C
ATOM     12  CA  ALA    12     -15.934  57.353  -6.181  1.00 25.00           C
ATOM     13  CA  THR    13     -12.098  57.082  -6.525  1.00 25.00           C
ATOM     14  CA  GLY    14     -12.021  60.016  -4.057  1.00 25.00           C
ATOM     15  CA  SER    15     -13.187  60.418  -0.518  1.00 25.00           C
ATOM     16  CA  VAL    16     -14.705  63.914  -0.900  1.00 25.00           C
ATOM     17  CA  GLY    17     -16.974  62.647  -3.714  1.00 25.00           C
ATOM     18  CA  GLU    18     -18.088  59.708  -1.526  1.00 25.00           C
ATOM     19  CA  ALA    19     -18.852  62.111   1.356  1.00 25.00           C
ATOM     20  CA  LEU    20     -20.892  64.332  -1.005  1.00 25.00           C
ATOM     21  CA  VAL    21     -22.839  61.273  -2.238  1.00 25.00           C
ATOM     22  CA  GLY    22     -23.543  60.230   1.380  1.00 25.00           C
ATOM     23  CA  LEU    23     -24.772  63.768   2.185  1.00 25.00           C
ATOM     24  CA  LEU    24     -27.062  63.697  -0.885  1.00 25.00           C
ATOM     25  CA  ASP    25     -28.458  60.301   0.204  1.00 25.00           C
ATOM     26  CA  GLU    26     -29.103  61.666   3.724  1.00 25.00           C
ATOM     27  CA  ARG    27     -32.470  62.842   2.280  1.00 25.00           C
ATOM     28  CA  ASP    28     -32.813  65.344  -0.564  1.00 25.00           C
ATOM     29  CA  PHE    29     -32.058  63.060  -3.512  1.00 25.00           C
ATOM     30  CA  PRO    30     -35.127  64.558  -5.053  1.00 25.00           C
ATOM     31  CA  LEU    31     -33.842  63.132  -8.316  1.00 25.00           C
ATOM     32  CA  HIS    32     -30.769  61.000  -9.139  1.00 25.00           C
ATOM     33  CA  ARG    33     -28.630  58.426  -7.293  1.00 25.00           C
ATOM     34  CA  LEU    34     -25.653  60.843  -7.754  1.00 25.00           C
ATOM     35  CA  HIS    35     -25.544  59.776 -11.413  1.00 25.00           C
ATOM     36  CA  LEU    36     -22.045  58.678 -12.427  1.00 25.00           C
ATOM     37  CA  LEU    37     -18.775  59.752 -13.995  1.00 25.00           C
ATOM     38  CA  ALA    38     -14.980  59.469 -13.682  1.00 25.00           C
ATOM     39  CA  SER    39     -11.965  57.359 -12.778  1.00 25.00           C
ATOM     40  CA  ALA    40     -11.040  57.317 -16.485  1.00 25.00           C
ATOM     41  CA  GLU    41     -11.665  53.539 -16.897  1.00 25.00           C
ATOM     42  CA  SER    42     -13.411  51.308 -19.488  1.00 25.00           C
ATOM     43  CA  ALA    43     -14.579  47.691 -19.179  1.00 25.00           C
ATOM     44  CA  GLY    44     -18.254  46.693 -18.665  1.00 25.00           C
ATOM     45  CA  GLN    45     -18.002  49.276 -15.884  1.00 25.00           C
ATOM     46  CA  ARG    46     -20.754  50.432 -13.514  1.00 25.00           C
ATOM     47  CA  MET    47     -21.902  52.768 -10.779  1.00 25.00           C
ATOM     48  CA  GLY    48     -24.403  51.508  -8.267  1.00 25.00           C
ATOM     49  CA  PHE    49     -26.535  51.029  -5.169  1.00 25.00           C
ATOM     50  CA  ALA    50     -27.436  47.613  -6.490  1.00 25.00           C
ATOM     51  CA  GLU    51     -31.041  48.780  -5.847  1.00 25.00           C
ATOM     52  CA  SER    52     -30.666  50.277  -9.362  1.00 25.00           C
ATOM     53  CA  SER    53     -29.049  52.920 -11.567  1.00 25.00           C
ATOM     54  CA  LEU    54     -26.409  54.713 -13.690  1.00 25.00           C
ATOM     55  CA  ARG    55     -24.440  53.858 -16.838  1.00 25.00           C
ATOM     56  CA  VAL    56     -20.940  55.223 -16.466  1.00 25.00           C
ATOM     57  CA  GLY    57     -19.973  58.203 -18.711  1.00 25.00           C
ATOM     58  CA  ASP    58     -19.109  60.333 -21.733  1.00 25.00           C
ATOM     59  CA  VAL    59     -20.145  63.846 -22.773  1.00 25.00           C
ATOM     60  CA  ASP    60     -20.785  63.378 -26.545  1.00 25.00           C
ATOM     61  CA  SER    61     -24.486  64.253 -26.302  1.00 25.00           C
ATOM     62  CA  PHE    62     -25.702  60.974 -24.740  1.00 25.00           C
ATOM     63  CA  ASP    63     -25.066  62.379 -21.235  1.00 25.00           C
ATOM     64  CA  PHE    64     -24.662  66.122 -21.653  1.00 25.00           C
ATOM     65  CA  SER    65     -28.215  67.069 -22.570  1.00 25.00           C
ATOM     66  CA  SER    66     -28.351  68.481 -19.054  1.00 25.00           C
ATOM     67  CA  VAL    67     -26.835  67.864 -15.644  1.00 25.00           C
ATOM     68  CA  GLY    68     -28.324  71.085 -14.246  1.00 25.00           C
ATOM     69  CA  LEU    69     -25.791  71.222 -11.449  1.00 25.00           C
ATOM     70  CA  ALA    70     -22.570  69.611 -10.081  1.00 25.00           C
ATOM     71  CA  PHE    71     -21.078  68.392  -6.817  1.00 25.00           C
ATOM     72  CA  PHE    72     -17.634  66.981  -7.769  1.00 25.00           C
ATOM     73  CA  ALA    73     -15.949  68.481  -4.655  1.00 25.00           C
ATOM     74  CA  ALA    74     -14.763  71.050  -7.148  1.00 25.00           C
ATOM     75  CA  ALA    75     -12.835  73.129  -9.726  1.00 25.00           C
ATOM     76  CA  ALA    76      -9.277  72.444 -10.771  1.00 25.00           C
ATOM     77  CA  GLU    77      -6.638  70.382 -12.539  1.00 25.00           C
ATOM     78  CA  VAL    78      -6.013  69.902 -16.286  1.00 25.00           C
ATOM     79  CA  SER    79      -8.685  67.160 -16.405  1.00 25.00           C
ATOM     80  CA  ARG    80     -11.159  69.460 -14.599  1.00 25.00           C
ATOM     81  CA  ALA    81     -10.405  72.269 -17.091  1.00 25.00           C
ATOM     82  CA  HIS    82     -10.970  69.861 -20.015  1.00 25.00           C
ATOM     83  CA  ALA    83     -14.305  68.754 -18.491  1.00 25.00           C
ATOM     84  CA  GLU    84     -15.359  72.413 -18.079  1.00 25.00           C
ATOM     85  CA  ARG    85     -14.436  73.116 -21.729  1.00 25.00           C
ATOM     86  CA  ALA    86     -16.480  70.079 -22.856  1.00 25.00           C
ATOM     87  CA  ARG    87     -19.470  71.298 -20.798  1.00 25.00           C
ATOM     88  CA  ALA    88     -19.165  74.777 -22.369  1.00 25.00           C
ATOM     89  CA  ALA    89     -22.712  74.526 -23.769  1.00 25.00           C
ATOM     90  CA  GLY    90     -23.909  74.310 -20.131  1.00 25.00           C
ATOM     91  CA  CYS    91     -22.295  73.261 -16.820  1.00 25.00           C
ATOM     92  CA  SER    92     -20.668  73.041 -13.384  1.00 25.00           C
ATOM     93  CA  VAL    93     -17.947  71.916 -10.952  1.00 25.00           C
ATOM     94  CA  ILE    94     -15.527  69.113 -12.045  1.00 25.00           C
ATOM     95  CA  ASP    95     -12.633  67.482 -10.160  1.00 25.00           C
ATOM     96  CA  LEU    96     -11.270  67.485  -6.588  1.00 25.00           C
ATOM     97  CA  SER    97      -9.922  70.886  -5.549  1.00 25.00           C
ATOM     98  CA  GLY    98      -8.305  74.328  -5.635  1.00 25.00           C
ATOM     99  CA  ALA    99      -8.044  76.797  -8.477  1.00 25.00           C
ATOM    100  CA  LEU   100     -11.028  78.765  -9.643  1.00 25.00           C
ATOM    101  CA  GLU   101     -10.397  82.326  -8.317  1.00 25.00           C
ATOM    102  CA  PRO   102      -7.757  83.043 -10.899  1.00 25.00           C
ATOM    103  CA  SER   103     -10.388  83.328 -13.625  1.00 25.00           C
ATOM    104  CA  VAL   104     -13.383  85.153 -15.134  1.00 25.00           C
ATOM    105  CA  ALA   105     -16.923  83.966 -14.993  1.00 25.00           C
ATOM    106  CA  PRO   106     -20.279  82.912 -13.611  1.00 25.00           C
ATOM    107  CA  PRO   107     -21.641  83.884 -10.219  1.00 25.00           C
ATOM    108  CA  VAL   108     -20.275  81.769  -7.326  1.00 25.00           C
ATOM    109  CA  MET   109     -21.812  81.166  -3.913  1.00 25.00           C
ATOM    110  CA  VAL   110     -20.186  79.742  -0.783  1.00 25.00           C
ATOM    111  CA  SER   111     -23.439  80.426   0.950  1.00 25.00           C
ATOM    112  CA  VAL   112     -21.777  83.499   2.328  1.00 25.00           C
ATOM    113  CA  ASN   113     -21.963  86.734   0.341  1.00 25.00           C
ATOM    114  CA  ALA   114     -25.376  86.708  -1.332  1.00 25.00           C
ATOM    115  CA  GLU   115     -24.181  89.804  -3.244  1.00 25.00           C
ATOM    116  CA  ARG   116     -21.514  87.707  -5.021  1.00 25.00           C
ATOM    117  CA  LEU   117     -24.157  85.101  -5.966  1.00 25.00           C
ATOM    118  CA  ALA   118     -26.427  87.865  -7.335  1.00 25.00           C
ATOM    119  CA  SER   119     -23.517  89.273  -9.388  1.00 25.00           C
ATOM    120  CA  GLN   120     -21.535  88.405 -12.530  1.00 25.00           C
ATOM    121  CA  ALA   121     -17.800  88.658 -12.692  1.00 25.00           C
ATOM    122  CA  ALA   122     -17.189  86.394  -9.708  1.00 25.00           C
ATOM    123  CA  PRO   123     -15.808  82.846 -10.215  1.00 25.00           C
ATOM    124  CA  PHE   124     -16.109  79.533 -12.149  1.00 25.00           C
ATOM    125  CA  LEU   125     -19.599  78.044 -12.391  1.00 25.00           C
ATOM    126  CA  LEU   126     -19.873  76.370  -8.990  1.00 25.00           C
ATOM    127  CA  SER   127     -20.597  74.826  -5.622  1.00 25.00           C
ATOM    128  CA  SER   128     -17.226  76.064  -4.395  1.00 25.00           C
ATOM    129  CA  PRO   129     -13.486  75.482  -4.027  1.00 25.00           C
ATOM    316  CA  VAL   316     -16.088  67.475  -0.222  1.00 25.00           C
ATOM    317  CA  ARG   317     -19.869  67.022   0.187  1.00 25.00           C
ATOM    318  CA  LYS   318     -19.849  69.377   3.207  1.00 25.00           C
ATOM    319  CA  GLY   319     -17.888  71.980   1.195  1.00 25.00           C
ATOM    320  CA  ALA   320     -20.401  71.688  -1.680  1.00 25.00           C
ATOM    321  CA  ALA   321     -23.302  72.153   0.777  1.00 25.00           C
ATOM    322  CA  LEU   322     -21.594  75.251   2.245  1.00 25.00           C
ATOM    323  CA  ASN   323     -21.099  76.676  -1.275  1.00 25.00           C
ATOM    324  CA  ALA   324     -24.792  76.051  -2.074  1.00 25.00           C
ATOM    325  CA  VAL   325     -25.817  77.810   1.170  1.00 25.00           C
ATOM    326  CA  LEU   326     -23.581  80.791   0.289  1.00 25.00           C
ATOM    327  CA  LEU   327     -25.145  80.965  -3.202  1.00 25.00           C
ATOM    328  CA  GLY   328     -28.651  80.890  -1.662  1.00 25.00           C
ATOM    329  CA  GLU   329     -27.681  83.710   0.741  1.00 25.00           C
ATOM    330  CA  LEU   330     -26.325  85.773  -2.187  1.00 25.00           C
ATOM    331  CA  LEU   331     -29.578  85.203  -4.127  1.00 25.00           C
ATOM    332  CA  ILE   332     -31.617  86.306  -1.078  1.00 25.00           C
ATOM    333  CA  LYS   333     -29.470  89.459  -0.750  1.00 25.00           C
ATOM    334  CA  HIS   334     -29.989  90.229  -4.467  1.00 25.00           C
ATOM    335  CA  TYR   335     -32.618  92.926  -3.637  1.00 25.00           C
ATOM    336  CA  LEU   336     -32.152  93.900   0.041  1.00 25.00           C
TER
END
