
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0298TS168_4-D1
# Molecule2: number of CA atoms  148 ( 1074),  selected  148 , name T0298_D1.pdb
# PARAMETERS: T0298TS168_4-D1.T0298_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   133         3 - 321         4.94    12.71
  LCS_AVERAGE:     82.26

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        14 - 41          1.96    12.97
  LCS_AVERAGE:     11.67

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       319 - 334         0.66    31.11
  LCS_AVERAGE:      4.80

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     Q       3     Q       3      3    9  133     1    6   13   28   44   63   79   87   95  102  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     P       4     P       4      4   23  133     2   10   18   37   55   69   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L       5     L       5      4   23  133     4   13   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     N       6     N       6      4   23  133     3    7   20   35   53   69   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V       7     V       7      4   23  133     3    8   19   29   46   63   79   89   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A       8     A       8      4   23  133     3   10   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V       9     V       9      4   23  133     3   10   22   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      10     V      10      4   23  133     4    8   21   37   58   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      11     G      11      4   23  133     3    5   13   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      12     A      12      3   23  133     3    4   13   32   53   69   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     T      13     T      13      3   23  133     3    3   11   18   28   54   71   87   97  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      14     G      14     14   28  133     3    7   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      15     S      15     14   28  133    10   13   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      16     V      16     14   28  133    10   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      17     G      17     14   28  133    10   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     E      18     E      18     14   28  133    10   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      19     A      19     14   28  133    10   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      20     L      20     14   28  133    10   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      21     V      21     14   28  133    10   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      22     G      22     14   28  133    10   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      23     L      23     14   28  133    10   13   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      24     L      24     14   28  133    10   13   25   38   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     D      25     D      25     14   28  133     8   13   25   38   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     E      26     E      26     14   28  133     3   13   25   38   58   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     R      27     R      27     14   28  133     3    3   15   33   44   63   76   85   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     D      28     D      28      4   28  133     3    9   20   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     F      29     F      29      4   28  133     3   10   23   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     P      30     P      30      4   28  133    10   12   20   33   50   67   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      31     L      31      4   28  133     4    4    6   20   44   60   79   86   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     H      32     H      32      4   28  133     4    4   13   31   47   69   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     R      33     R      33      4   28  133     4    8   17   38   54   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      34     L      34      4   28  133     3    9   20   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     H      35     H      35      5   28  133     3    8   17   33   52   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      36     L      36      5   28  133     3   13   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      37     L      37      5   28  133     3    7   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      38     A      38      5   28  133     5   13   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      39     S      39      5   28  133     1    5   14   28   50   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      40     A      40      4   28  133     3    7   20   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     E      41     E      41      4   28  133     3   11   18   36   52   66   77   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      42     S      42      4    8  133     3    4    5   11   18   33   49   66   79   93  106  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      43     A      43      4    8  133     3    4    5    6    9   10   29   62   90  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      44     G      44      4   10  133     3    4    6    7   17   38   62   80   93  105  109  114  120  123  124  126  126  126  126  128 
LCS_GDT     Q      45     Q      45      5   10  133     3    5    7   10   22   39   56   70   84   96  106  114  120  123  124  126  126  126  126  128 
LCS_GDT     R      46     R      46      5   10  133     3    5   12   27   48   60   71   84   96  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     M      47     M      47      5   10  133     3    5    7    9   17   31   40   59   78   91   99  111  120  123  124  126  126  126  126  128 
LCS_GDT     G      48     G      48      5   10  133     3    5    7   18   23   38   55   74   80   93  106  114  120  123  124  126  126  126  126  128 
LCS_GDT     F      49     F      49      5   11  133     3    5    7    9   17   31   46   70   80   98  106  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      50     A      50      5   11  133     3    4    7   10   14   26   36   59   72   84   91  108  116  123  124  126  126  126  126  128 
LCS_GDT     E      51     E      51      5   11  133     3    8   19   38   52   66   77   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      52     S      52      6   11  133     4    4   11   22   41   65   79   89   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      53     S      53      6   11  133     4   11   20   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      54     L      54      6   11  133     4   11   22   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     R      55     R      55      6   11  133     4    8   20   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      56     V      56      6   11  133     5   13   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      57     G      57      6   11  133     4   13   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     D      58     D      58      4   11  133     3    3    8   10   23   36   54   71   85   97  109  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      59     V      59      3   11  133     3    3    8   10   12   18   28   37   51   82   94  107  112  119  124  126  126  126  126  128 
LCS_GDT     D      60     D      60      3    9  133     3    3    5    7   12   13   17   21   35   52   61   72   80  110  116  120  123  126  126  127 
LCS_GDT     S      61     S      61      3    6  133     3    3    3   10   19   36   61   71   85   96  105  114  120  123  124  126  126  126  126  128 
LCS_GDT     F      62     F      62      3    5  133     3    3    3    7   15   23   35   46   61   89   99  114  120  123  124  126  126  126  126  128 
LCS_GDT     D      63     D      63      4    9  133     3    7   18   34   48   67   77   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     F      64     F      64      4    9  133     3   10   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      65     S      65      4   11  133     3   12   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      66     S      66      4   11  133     3   10   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      67     V      67      3   11  133     3    3   10   21   51   67   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      68     G      68      3   14  133     3    3    5   15   26   35   53   73   90   97  104  110  115  119  124  126  126  126  126  128 
LCS_GDT     L      69     L      69      3   14  133     3    5   11   22   36   62   79   88   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      70     A      70      4   14  133     3   11   23   38   58   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     F      71     F      71      4   14  133     3   13   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     F      72     F      72      4   14  133     3    6   10   21   33   54   66   78   92  105  109  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      73     A      73      4   14  133     3   11   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      74     A      74      3   18  133     3   10   21   36   58   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      75     A      75      8   18  133     3   12   21   38   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      76     A      76      8   18  133     7    7   17   37   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     E      77     E      77      8   18  133     7   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      78     V      78      8   18  133     7   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      79     S      79      8   18  133     7   14   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     R      80     R      80     10   18  133     7   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      81     A      81     10   18  133     7   13   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     H      82     H      82     10   18  133     7   13   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      83     A      83     10   18  133     7    8   11   26   46   63   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     E      84     E      84     10   18  133     7    8   10   15   38   61   76   88   97  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     R      85     R      85     10   18  133     7   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      86     A      86     10   18  133     7    8   10   15   35   47   70   88   97  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     R      87     R      87     10   18  133     7    8   10   15   15   21   48   66   82   91  101  109  114  123  124  126  126  126  126  128 
LCS_GDT     A      88     A      88     10   18  133     7    8   10   25   45   61   73   88   97  105  109  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      89     A      89     10   18  133     7    8   19   29   46   61   76   89   97  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      90     G      90      5   18  133     0    7   19   31   47   64   79   89   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     C      91     C      91      5   18  133     3   10   22   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      92     S      92      5   14  133     6   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V      93     V      93      5   14  133     6   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     I      94     I      94      5   14  133     6   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     D      95     D      95      4   14  133     3   10   20   37   54   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L      96     L      96      4   14  133     3   13   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S      97     S      97      4   14  133     3   10   21   38   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     G      98     G      98      4   14  133     3    4   12   34   58   70   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A      99     A      99      4   14  133     3   10   25   38   58   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L     100     L     100      4   14  133     3   13   25   38   58   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     E     101     E     101      4   14  133     3   13   23   38   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     P     102     P     102      4   14  133     2    9   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S     103     S     103      4   12  133     4    6    7   22   45   67   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V     104     V     104      4    7  133     4    4   11   18   46   66   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A     105     A     105      5    7  133     4    4    5    7   17   34   42   76   94  101  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     P     106     P     106      5    7  133     4    6   11   25   35   61   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     P     107     P     107      5    7  133     3    6    7   10   22   40   67   79   95  104  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V     108     V     108      5   13  133     3    4   11   28   42   63   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     M     109     M     109      5   13  133     3    4    9   28   40   63   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V     110     V     110      4   13  133     3    4    5    8   15   27   64   86   97  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S     111     S     111      4   13  133     3    5    5   14   23   44   61   77   89  100  107  113  120  123  124  126  126  126  126  128 
LCS_GDT     V     112     V     112      5   13  133     3    5   10   33   46   63   78   88   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     N     113     N     113      6   13  133     4    7   21   36   50   67   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A     114     A     114      6   13  133     4    7   15   33   49   65   79   88   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     E     115     E     115      6   13  133     4    7   17   36   51   65   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     R     116     R     116      6   13  133     4   10   22   38   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L     117     L     117      6   13  133     6   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A     118     A     118      6   13  133     3   10   21   38   54   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S     119     S     119      6   13  133     3   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     Q     120     Q     120      6   13  133     3   10   22   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A     121     A     121      6   12  133     6   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     A     122     A     122      4   11  133     3   13   25   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     P     123     P     123      4   10  133     1   10   18   38   54   69   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     F     124     F     124      5    9  133     1   13   25   38   56   69   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L     125     L     125      5    9  133     4    5   11   33   50   66   79   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     L     126     L     126      5    9  133     6   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S     127     S     127      5    9  133     4   16   26   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     S     128     S     128      5    9  133     4    7   20   39   59   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     P     129     P     129      3    6  133     3    6   14   30   49   71   80   90   98  105  110  114  120  123  124  126  126  126  126  128 
LCS_GDT     V     316     V     316      5   20  133     3    4    5    5   12   14   20   21   21   21   21   35   50   77   96  106  111  115  119  126 
LCS_GDT     R     317     R     317      5   20  133     3    4    5    6   12   17   20   29   46   57   75   91  106  110  112  115  119  122  126  128 
LCS_GDT     K     318     K     318      5   20  133     3    4    5   10   17   17   20   21   21   26   40   61   69   90  108  113  119  122  126  128 
LCS_GDT     G     319     G     319     16   20  133     3    4   16   16   17   17   20   21   21   21   21   21   21   21   22   28   37   40   42  103 
LCS_GDT     A     320     A     320     16   20  133     4   15   16   16   17   17   20   21   21   21   21   21   21   21   22   28   38   55   68   77 
LCS_GDT     A     321     A     321     16   20  133    13   15   16   16   17   17   20   21   21   21   21   21   23   30   37   49   56   60   69   82 
LCS_GDT     L     322     L     322     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   29   37   46   55   60 
LCS_GDT     N     323     N     323     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     A     324     A     324     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     V     325     V     325     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     L     326     L     326     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     L     327     L     327     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     G     328     G     328     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     E     329     E     329     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     L     330     L     330     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     L     331     L     331     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     I     332     I     332     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     K     333     K     333     16   20   22    13   15   16   16   17   17   20   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     H     334     H     334     16   20   22     3   15   16   16   17   17   19   21   21   21   21   21   21   21   22   23   26   27   30   32 
LCS_GDT     Y     335     Y     335      3   20   22     3    3    4    5    8   17   20   21   21   21   21   21   21   21   22   22   23   24   25   26 
LCS_GDT     L     336     L     336      3   20   22     3    3   13   15   17   17   20   21   21   21   21   21   21   21   22   22   23   26   28   32 
LCS_AVERAGE  LCS_A:  32.91  (   4.80   11.67   82.26 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     16     26     39     59     71     80     90     98    105    110    114    120    123    124    126    126    126    126    128 
GDT PERCENT_CA   8.78  10.81  17.57  26.35  39.86  47.97  54.05  60.81  66.22  70.95  74.32  77.03  81.08  83.11  83.78  85.14  85.14  85.14  85.14  86.49
GDT RMS_LOCAL    0.18   0.69   1.04   1.45   1.85   2.06   2.26   2.51   2.71   2.91   3.11   3.26   3.60   3.77   3.79   3.89   3.89   3.89   3.89   4.11
GDT RMS_ALL_CA  31.13  13.27  13.00  12.88  12.85  12.88  12.97  12.82  12.93  12.90  12.87  12.85  12.84  12.96  12.91  12.91  12.91  12.91  12.91  12.84

#      Molecule1      Molecule2       DISTANCE
LGA    Q       3      Q       3          5.472
LGA    P       4      P       4          3.607
LGA    L       5      L       5          0.676
LGA    N       6      N       6          3.082
LGA    V       7      V       7          4.400
LGA    A       8      A       8          2.218
LGA    V       9      V       9          2.410
LGA    V      10      V      10          2.235
LGA    G      11      G      11          2.533
LGA    A      12      A      12          2.889
LGA    T      13      T      13          4.747
LGA    G      14      G      14          1.909
LGA    S      15      S      15          1.674
LGA    V      16      V      16          1.689
LGA    G      17      G      17          1.745
LGA    E      18      E      18          1.494
LGA    A      19      A      19          1.560
LGA    L      20      L      20          1.985
LGA    V      21      V      21          1.853
LGA    G      22      G      22          1.854
LGA    L      23      L      23          2.343
LGA    L      24      L      24          2.669
LGA    D      25      D      25          2.921
LGA    E      26      E      26          3.230
LGA    R      27      R      27          4.883
LGA    D      28      D      28          1.836
LGA    F      29      F      29          2.035
LGA    P      30      P      30          3.980
LGA    L      31      L      31          4.819
LGA    H      32      H      32          3.760
LGA    R      33      R      33          2.758
LGA    L      34      L      34          1.691
LGA    H      35      H      35          3.113
LGA    L      36      L      36          2.525
LGA    L      37      L      37          1.773
LGA    A      38      A      38          2.376
LGA    S      39      S      39          3.202
LGA    A      40      A      40          1.858
LGA    E      41      E      41          4.896
LGA    S      42      S      42          9.216
LGA    A      43      A      43          6.415
LGA    G      44      G      44          6.880
LGA    Q      45      Q      45          9.011
LGA    R      46      R      46          6.581
LGA    M      47      M      47          9.940
LGA    G      48      G      48          9.160
LGA    F      49      F      49          8.092
LGA    A      50      A      50          9.371
LGA    E      51      E      51          4.757
LGA    S      52      S      52          4.233
LGA    S      53      S      53          2.045
LGA    L      54      L      54          1.689
LGA    R      55      R      55          1.844
LGA    V      56      V      56          2.943
LGA    G      57      G      57          2.464
LGA    D      58      D      58          7.118
LGA    V      59      V      59          9.321
LGA    D      60      D      60         12.684
LGA    S      61      S      61          7.969
LGA    F      62      F      62          7.995
LGA    D      63      D      63          3.997
LGA    F      64      F      64          2.581
LGA    S      65      S      65          1.682
LGA    S      66      S      66          1.406
LGA    V      67      V      67          3.708
LGA    G      68      G      68          6.694
LGA    L      69      L      69          4.475
LGA    A      70      A      70          2.584
LGA    F      71      F      71          2.144
LGA    F      72      F      72          5.216
LGA    A      73      A      73          1.176
LGA    A      74      A      74          2.522
LGA    A      75      A      75          2.031
LGA    A      76      A      76          2.463
LGA    E      77      E      77          1.607
LGA    V      78      V      78          0.364
LGA    S      79      S      79          1.196
LGA    R      80      R      80          0.970
LGA    A      81      A      81          0.887
LGA    H      82      H      82          1.951
LGA    A      83      A      83          3.876
LGA    E      84      E      84          4.815
LGA    R      85      R      85          1.342
LGA    A      86      A      86          4.956
LGA    R      87      R      87          7.694
LGA    A      88      A      88          5.783
LGA    A      89      A      89          4.948
LGA    G      90      G      90          4.349
LGA    C      91      C      91          2.392
LGA    S      92      S      92          1.342
LGA    V      93      V      93          1.466
LGA    I      94      I      94          1.584
LGA    D      95      D      95          3.322
LGA    L      96      L      96          1.319
LGA    S      97      S      97          2.103
LGA    G      98      G      98          2.982
LGA    A      99      A      99          2.496
LGA    L     100      L     100          3.097
LGA    E     101      E     101          2.358
LGA    P     102      P     102          1.300
LGA    S     103      S     103          3.685
LGA    V     104      V     104          3.329
LGA    A     105      A     105          5.473
LGA    P     106      P     106          3.854
LGA    P     107      P     107          5.564
LGA    V     108      V     108          3.531
LGA    M     109      M     109          3.478
LGA    V     110      V     110          5.078
LGA    S     111      S     111          7.050
LGA    V     112      V     112          5.156
LGA    N     113      N     113          3.819
LGA    A     114      A     114          4.260
LGA    E     115      E     115          3.933
LGA    R     116      R     116          2.309
LGA    L     117      L     117          1.224
LGA    A     118      A     118          3.091
LGA    S     119      S     119          1.788
LGA    Q     120      Q     120          2.070
LGA    A     121      A     121          1.132
LGA    A     122      A     122          1.935
LGA    P     123      P     123          3.786
LGA    F     124      F     124          3.744
LGA    L     125      L     125          3.973
LGA    L     126      L     126          1.733
LGA    S     127      S     127          1.878
LGA    S     128      S     128          1.986
LGA    P     129      P     129          3.601
LGA    V     316      V     316         11.451
LGA    R     317      R     317          9.846
LGA    K     318      K     318         10.321
LGA    G     319      G     319         13.769
LGA    A     320      A     320         15.529
LGA    A     321      A     321         17.436
LGA    L     322      L     322         20.109
LGA    N     323      N     323         22.020
LGA    A     324      A     324         23.554
LGA    V     325      V     325         26.659
LGA    L     326      L     326         28.947
LGA    L     327      L     327         31.007
LGA    G     328      G     328         33.069
LGA    E     329      E     329         35.910
LGA    L     330      L     330         38.366
LGA    L     331      L     331         40.274
LGA    I     332      I     332         42.924
LGA    K     333      K     333         45.468
LGA    H     334      H     334         48.300
LGA    Y     335      Y     335         50.381
LGA    L     336      L     336         51.003

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     90    2.51    45.777    40.971     3.450

LGA_LOCAL      RMSD =  2.509  Number of atoms =   90  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 12.776  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 11.607  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.569350 * X  +   0.331984 * Y  +   0.752082 * Z  + -15.456470
  Y_new =  -0.665928 * X  +   0.722683 * Y  +   0.185122 * Z  +  72.131920
  Z_new =  -0.482059 * X  +  -0.606231 * Y  +   0.632536 * Z  +   2.195586 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.764167    2.377426  [ DEG:   -43.7835    136.2165 ]
  Theta =   0.503004    2.638589  [ DEG:    28.8200    151.1800 ]
  Phi   =  -0.863423    2.278170  [ DEG:   -49.4705    130.5295 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0298TS168_4-D1                               
REMARK     2: T0298_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0298TS168_4-D1.T0298_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   90   2.51  40.971    11.61
REMARK  ---------------------------------------------------------- 
MOLECULE T0298TS168_4-D1
PFRMAT TS
TARGET T0298
MODEL 4
PARENT N/A
ATOM      3  CA  GLN     3     -39.288  71.787 -10.305  1.00 25.00           C
ATOM      4  CA  PRO     4     -35.896  70.927 -11.904  1.00 25.00           C
ATOM      5  CA  LEU     5     -32.529  69.431 -12.845  1.00 25.00           C
ATOM      6  CA  ASN     6     -29.788  69.245 -15.476  1.00 25.00           C
ATOM      7  CA  VAL     7     -26.140  68.540 -15.958  1.00 25.00           C
ATOM      8  CA  ALA     8     -23.401  66.100 -15.028  1.00 25.00           C
ATOM      9  CA  VAL     9     -20.556  64.864 -12.778  1.00 25.00           C
ATOM     10  CA  VAL    10     -17.458  65.981 -10.841  1.00 25.00           C
ATOM     11  CA  GLY    11     -14.832  63.484 -12.176  1.00 25.00           C
ATOM     12  CA  ALA    12     -15.137  60.877  -9.410  1.00 25.00           C
ATOM     13  CA  THR    13     -11.648  60.167  -8.063  1.00 25.00           C
ATOM     14  CA  GLY    14     -12.419  57.862  -5.165  1.00 25.00           C
ATOM     15  CA  SER    15     -14.660  59.828  -2.780  1.00 25.00           C
ATOM     16  CA  VAL    16     -16.489  63.191  -2.644  1.00 25.00           C
ATOM     17  CA  GLY    17     -18.694  62.139  -5.594  1.00 25.00           C
ATOM     18  CA  GLU    18     -19.498  58.828  -3.845  1.00 25.00           C
ATOM     19  CA  ALA    19     -20.414  60.716  -0.641  1.00 25.00           C
ATOM     20  CA  LEU    20     -22.691  63.057  -2.643  1.00 25.00           C
ATOM     21  CA  VAL    21     -24.383  60.042  -4.290  1.00 25.00           C
ATOM     22  CA  GLY    22     -24.919  58.435  -0.856  1.00 25.00           C
ATOM     23  CA  LEU    23     -26.439  61.695   0.460  1.00 25.00           C
ATOM     24  CA  LEU    24     -28.776  61.856  -2.570  1.00 25.00           C
ATOM     25  CA  ASP    25     -29.843  58.227  -1.973  1.00 25.00           C
ATOM     26  CA  GLU    26     -30.536  59.012   1.711  1.00 25.00           C
ATOM     27  CA  ARG    27     -32.746  61.563   3.433  1.00 25.00           C
ATOM     28  CA  ASP    28     -32.355  64.180   0.676  1.00 25.00           C
ATOM     29  CA  PHE    29     -33.176  66.081  -2.572  1.00 25.00           C
ATOM     30  CA  PRO    30     -36.652  64.991  -3.783  1.00 25.00           C
ATOM     31  CA  LEU    31     -34.628  62.674  -6.037  1.00 25.00           C
ATOM     32  CA  HIS    32     -32.222  63.343  -8.958  1.00 25.00           C
ATOM     33  CA  ARG    33     -31.571  60.314 -11.165  1.00 25.00           C
ATOM     34  CA  LEU    34     -27.896  60.795 -10.276  1.00 25.00           C
ATOM     35  CA  HIS    35     -24.885  58.813 -11.395  1.00 25.00           C
ATOM     36  CA  LEU    36     -22.966  60.536 -14.135  1.00 25.00           C
ATOM     37  CA  LEU    37     -19.591  59.485 -12.767  1.00 25.00           C
ATOM     38  CA  ALA    38     -16.679  59.366 -15.162  1.00 25.00           C
ATOM     39  CA  SER    39     -13.625  57.658 -13.572  1.00 25.00           C
ATOM     40  CA  ALA    40     -12.432  57.277 -17.199  1.00 25.00           C
ATOM     41  CA  GLU    41     -12.569  53.850 -18.847  1.00 25.00           C
ATOM     42  CA  SER    42     -15.311  53.476 -21.497  1.00 25.00           C
ATOM     43  CA  ALA    43     -15.994  49.889 -20.405  1.00 25.00           C
ATOM     44  CA  GLY    44     -19.146  48.215 -21.637  1.00 25.00           C
ATOM     45  CA  GLN    45     -22.194  48.420 -19.289  1.00 25.00           C
ATOM     46  CA  ARG    46     -23.105  50.142 -16.029  1.00 25.00           C
ATOM     47  CA  MET    47     -26.072  52.528 -15.957  1.00 25.00           C
ATOM     48  CA  GLY    48     -28.507  53.054 -13.016  1.00 25.00           C
ATOM     49  CA  PHE    49     -31.684  52.634 -10.953  1.00 25.00           C
ATOM     50  CA  ALA    50     -33.880  49.814  -9.703  1.00 25.00           C
ATOM     51  CA  GLU    51     -31.458  49.690  -6.790  1.00 25.00           C
ATOM     52  CA  SER    52     -28.310  47.626  -6.331  1.00 25.00           C
ATOM     53  CA  SER    53     -25.341  49.553  -7.659  1.00 25.00           C
ATOM     54  CA  LEU    54     -24.203  52.282 -10.067  1.00 25.00           C
ATOM     55  CA  ARG    55     -21.414  53.241 -12.425  1.00 25.00           C
ATOM     56  CA  VAL    56     -21.890  55.518 -15.497  1.00 25.00           C
ATOM     57  CA  GLY    57     -20.826  56.958 -18.838  1.00 25.00           C
ATOM     58  CA  ASP    58     -22.762  59.512 -20.956  1.00 25.00           C
ATOM     59  CA  VAL    59     -24.482  62.619 -22.431  1.00 25.00           C
ATOM     60  CA  ASP    60     -26.393  63.746 -25.481  1.00 25.00           C
ATOM     61  CA  SER    61     -23.008  64.940 -26.820  1.00 25.00           C
ATOM     62  CA  PHE    62     -21.203  68.318 -26.811  1.00 25.00           C
ATOM     63  CA  ASP    63     -21.457  68.472 -22.993  1.00 25.00           C
ATOM     64  CA  PHE    64     -24.414  69.739 -21.025  1.00 25.00           C
ATOM     65  CA  SER    65     -27.571  68.629 -22.798  1.00 25.00           C
ATOM     66  CA  SER    66     -28.517  66.517 -19.759  1.00 25.00           C
ATOM     67  CA  VAL    67     -28.911  64.389 -16.592  1.00 25.00           C
ATOM     68  CA  GLY    68     -28.259  65.089 -12.884  1.00 25.00           C
ATOM     69  CA  LEU    69     -26.945  67.569 -10.309  1.00 25.00           C
ATOM     70  CA  ALA    70     -23.549  69.316 -10.228  1.00 25.00           C
ATOM     71  CA  PHE    71     -21.034  67.727  -7.768  1.00 25.00           C
ATOM     72  CA  PHE    72     -17.957  67.293  -5.546  1.00 25.00           C
ATOM     73  CA  ALA    73     -14.691  65.783  -6.839  1.00 25.00           C
ATOM     74  CA  ALA    74     -10.961  65.589  -7.560  1.00 25.00           C
ATOM     75  CA  ALA    75      -9.052  67.917  -9.884  1.00 25.00           C
ATOM     76  CA  ALA    76      -6.030  68.170 -12.130  1.00 25.00           C
ATOM     77  CA  GLU    77      -6.708  67.006 -15.640  1.00 25.00           C
ATOM     78  CA  VAL    78     -10.488  66.662 -15.129  1.00 25.00           C
ATOM     79  CA  SER    79     -10.690  70.310 -13.983  1.00 25.00           C
ATOM     80  CA  ARG    80      -8.717  71.415 -17.075  1.00 25.00           C
ATOM     81  CA  ALA    81     -11.078  69.410 -19.328  1.00 25.00           C
ATOM     82  CA  HIS    82     -14.108  71.030 -17.636  1.00 25.00           C
ATOM     83  CA  ALA    83     -12.572  74.500 -18.152  1.00 25.00           C
ATOM     84  CA  GLU    84     -11.951  73.704 -21.847  1.00 25.00           C
ATOM     85  CA  ARG    85     -15.579  72.538 -22.230  1.00 25.00           C
ATOM     86  CA  ALA    86     -16.816  75.768 -20.585  1.00 25.00           C
ATOM     87  CA  ARG    87     -14.636  77.840 -22.955  1.00 25.00           C
ATOM     88  CA  ALA    88     -16.034  75.918 -25.959  1.00 25.00           C
ATOM     89  CA  ALA    89     -19.783  76.082 -25.092  1.00 25.00           C
ATOM     90  CA  GLY    90     -21.676  76.234 -21.844  1.00 25.00           C
ATOM     91  CA  CYS    91     -23.265  74.488 -18.868  1.00 25.00           C
ATOM     92  CA  SER    92     -23.414  73.900 -15.098  1.00 25.00           C
ATOM     93  CA  VAL    93     -20.339  72.564 -13.449  1.00 25.00           C
ATOM     94  CA  ILE    94     -19.519  72.184  -9.779  1.00 25.00           C
ATOM     95  CA  ASP    95     -17.523  72.022  -6.572  1.00 25.00           C
ATOM     96  CA  LEU    96     -13.883  70.938  -7.107  1.00 25.00           C
ATOM     97  CA  SER    97     -10.682  72.084  -5.425  1.00 25.00           C
ATOM     98  CA  GLY    98      -8.732  75.337  -5.157  1.00 25.00           C
ATOM     99  CA  ALA    99      -7.845  74.699  -8.744  1.00 25.00           C
ATOM    100  CA  LEU   100     -10.082  77.591  -9.607  1.00 25.00           C
ATOM    101  CA  GLU   101     -11.767  80.876  -8.701  1.00 25.00           C
ATOM    102  CA  PRO   102      -9.686  83.567 -10.395  1.00 25.00           C
ATOM    103  CA  SER   103     -10.662  81.575 -13.498  1.00 25.00           C
ATOM    104  CA  VAL   104     -11.275  84.837 -15.240  1.00 25.00           C
ATOM    105  CA  ALA   105     -15.016  84.785 -14.609  1.00 25.00           C
ATOM    106  CA  PRO   106     -16.037  82.051 -12.111  1.00 25.00           C
ATOM    107  CA  PRO   107     -17.450  83.831  -9.008  1.00 25.00           C
ATOM    108  CA  VAL   108     -16.404  81.435  -6.247  1.00 25.00           C
ATOM    109  CA  MET   109     -18.603  80.463  -3.304  1.00 25.00           C
ATOM    110  CA  VAL   110     -22.131  79.217  -3.796  1.00 25.00           C
ATOM    111  CA  SER   111     -25.230  80.140  -1.809  1.00 25.00           C
ATOM    112  CA  VAL   112     -24.248  82.799   0.725  1.00 25.00           C
ATOM    113  CA  ASN   113     -23.630  85.454  -1.910  1.00 25.00           C
ATOM    114  CA  ALA   114     -26.887  85.098  -3.822  1.00 25.00           C
ATOM    115  CA  GLU   115     -26.597  88.389  -5.760  1.00 25.00           C
ATOM    116  CA  ARG   116     -23.041  87.467  -6.842  1.00 25.00           C
ATOM    117  CA  LEU   117     -24.260  84.028  -8.005  1.00 25.00           C
ATOM    118  CA  ALA   118     -27.087  85.676  -9.995  1.00 25.00           C
ATOM    119  CA  SER   119     -24.581  88.075 -11.617  1.00 25.00           C
ATOM    120  CA  GLN   120     -22.014  86.635 -14.096  1.00 25.00           C
ATOM    121  CA  ALA   121     -24.721  84.668 -15.901  1.00 25.00           C
ATOM    122  CA  ALA   122     -26.546  82.042 -13.823  1.00 25.00           C
ATOM    123  CA  PRO   123     -23.257  80.176 -13.707  1.00 25.00           C
ATOM    124  CA  PHE   124     -22.502  79.913  -9.960  1.00 25.00           C
ATOM    125  CA  LEU   125     -22.105  76.362 -11.266  1.00 25.00           C
ATOM    126  CA  LEU   126     -18.515  76.887 -10.156  1.00 25.00           C
ATOM    127  CA  SER   127     -15.470  75.522  -8.467  1.00 25.00           C
ATOM    128  CA  SER   128     -14.555  76.026  -4.824  1.00 25.00           C
ATOM    129  CA  PRO   129     -15.066  73.171  -2.421  1.00 25.00           C
ATOM    316  CA  VAL   316     -12.886  65.072  14.386  1.00 25.00           C
ATOM    317  CA  ARG   317     -12.657  67.976  11.899  1.00 25.00           C
ATOM    318  CA  LYS   318     -13.829  70.419  14.606  1.00 25.00           C
ATOM    319  CA  GLY   319     -11.199  69.039  17.024  1.00 25.00           C
ATOM    320  CA  ALA   320      -8.489  69.446  14.348  1.00 25.00           C
ATOM    321  CA  ALA   321      -9.608  73.056  13.730  1.00 25.00           C
ATOM    322  CA  LEU   322      -9.477  73.767  17.491  1.00 25.00           C
ATOM    323  CA  ASN   323      -5.952  72.282  17.674  1.00 25.00           C
ATOM    324  CA  ALA   324      -4.855  74.460  14.721  1.00 25.00           C
ATOM    325  CA  VAL   325      -6.309  77.561  16.434  1.00 25.00           C
ATOM    326  CA  LEU   326      -4.449  76.678  19.664  1.00 25.00           C
ATOM    327  CA  LEU   327      -1.188  76.255  17.699  1.00 25.00           C
ATOM    328  CA  GLY   328      -1.729  79.656  16.024  1.00 25.00           C
ATOM    329  CA  GLU   329      -2.349  81.270  19.442  1.00 25.00           C
ATOM    330  CA  LEU   330       0.859  79.680  20.801  1.00 25.00           C
ATOM    331  CA  LEU   331       2.817  80.991  17.782  1.00 25.00           C
ATOM    332  CA  ILE   332       1.381  84.497  18.341  1.00 25.00           C
ATOM    333  CA  LYS   333       2.374  84.341  22.037  1.00 25.00           C
ATOM    334  CA  HIS   334       5.917  83.261  21.065  1.00 25.00           C
ATOM    335  CA  TYR   335       7.674  86.643  21.552  1.00 25.00           C
ATOM    336  CA  LEU   336       4.584  88.658  20.501  1.00 25.00           C
TER
END
