
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0298TS393_1-D1
# Molecule2: number of CA atoms  148 ( 1074),  selected  148 , name T0298_D1.pdb
# PARAMETERS: T0298TS393_1-D1.T0298_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148         3 - 336         4.65     4.65
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        64 - 99          1.99     5.19
  LCS_AVERAGE:     14.12

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       319 - 334         0.66    11.68
  LCS_AVERAGE:      5.02

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     Q       3     Q       3      4   24  148     3    7   25   45   65   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     P       4     P       4      4   24  148     6   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L       5     L       5      4   24  148     1    9   30   48   67   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     N       6     N       6      7   24  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V       7     V       7      7   24  148     4   16   40   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A       8     A       8      7   24  148     6   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V       9     V       9      7   24  148     4   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      10     V      10      7   24  148     4   14   38   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      11     G      11      7   24  148     4   13   36   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      12     A      12      7   24  148     4   13   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     T      13     T      13      4   24  148     3    8   24   53   68   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      14     G      14     13   24  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      15     S      15     13   24  148    11   14   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      16     V      16     13   24  148    11   12   14   31   67   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      17     G      17     13   24  148    11   12   12   23   44   72   86  100  112  116  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E      18     E      18     13   24  148    11   12   23   52   68   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      19     A      19     13   24  148    11   16   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      20     L      20     13   24  148    11   12   21   31   63   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      21     V      21     13   24  148    11   12   23   50   68   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      22     G      22     13   24  148    11   15   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      23     L      23     13   24  148    11   12   24   55   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      24     L      24     13   24  148    11   12   25   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     D      25     D      25     13   24  148    11   15   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E      26     E      26     13   24  148    11   12   29   48   67   81   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R      27     R      27      4   14  148     3    4    4    7   11   23   41   56   79   92  105  118  126  132  137  141  142  143  144  145 
LCS_GDT     D      28     D      28      4    8  148     3    4    5   10   17   29   55   68   85  104  113  122  129  134  138  141  142  143  144  145 
LCS_GDT     F      29     F      29      4    8  148     3    4    4    6    7    9   12   19   22   36   51   63   89  100  120  126  131  137  141  145 
LCS_GDT     P      30     P      30      4    8  148     3    4    4    6    9   11   17   23   32   39   50   64   75   89  102  115  121  132  135  139 
LCS_GDT     L      31     L      31      4    8  148     3    3    4    6   11   17   24   33   41   69   77  103  110  120  123  129  134  138  141  145 
LCS_GDT     H      32     H      32      4    8  148     3    7   12   17   29   40   60   81   92  104  112  122  129  133  136  141  142  143  144  145 
LCS_GDT     R      33     R      33      4    9  148     4   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      34     L      34      4    9  148     4   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     H      35     H      35      4    9  148     2    9   21   41   63   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      36     L      36      4    9  148     2    9   24   44   66   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      37     L      37      4    9  148     3   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      38     A      38      4    9  148     3   13   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      39     S      39      4    9  148     3    9   27   51   68   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      40     A      40      4    9  148     1   10   30   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E      41     E      41      3    9  148     4    8   18   38   59   79   92  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      42     S      42      3    8  148     2    4    7   15   31   42   62   85   98  113  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      43     A      43      3    8  148     3    3    4    5    7    9   11   17   69  106  116  125  131  134  138  141  142  143  144  145 
LCS_GDT     G      44     G      44      5    8  148     3    4    5    7    9   24   63   91  107  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     Q      45     Q      45      5    8  148     4    5   13   28   51   68   87  102  111  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R      46     R      46      5    8  148     4    5    8   17   36   54   77   90  103  115  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     M      47     M      47      5    8  148     4    4    8   11   16   22   41   64   89  101  117  126  131  134  138  141  142  143  144  145 
LCS_GDT     G      48     G      48      5    8  148     3    4    5    9   15   22   31   35   49   73   84   95  103  122  136  141  142  143  144  145 
LCS_GDT     F      49     F      49      3    8  148     3    3    5    9   14   22   31   35   49   58   68   95  117  122  133  141  142  143  144  145 
LCS_GDT     A      50     A      50      3    8  148     3    3    8   11   16   22   31   64   76   93  103  118  128  133  138  141  142  143  144  145 
LCS_GDT     E      51     E      51      3    8  148     3    3    6    7   13   15   17   42   73   85  110  120  128  133  138  141  142  143  144  145 
LCS_GDT     S      52     S      52      4    8  148     3    3    7   14   17   23   67   82   94  110  118  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      53     S      53      4    8  148     3    4    7   13   44   67   80  100  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      54     L      54      4    8  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R      55     R      55      4    8  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      56     V      56      4    8  148     5   14   32   57   69   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      57     G      57      4    7  148     4   14   36   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     D      58     D      58      4    7  148     3    3   16   38   59   78   92  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      59     V      59      4    7  148     3    3    4    6    7    8   18   25   43   67  111  122  128  133  138  141  142  143  144  145 
LCS_GDT     D      60     D      60      3    7  148     3    3    4    5    6    8    8   12   58   80  111  122  125  131  136  139  141  143  144  145 
LCS_GDT     S      61     S      61      3    5  148     3    3    5   13   29   52   69   88  101  113  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     F      62     F      62      3   22  148     3    4    5   10   21   45   68   91  102  117  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     D      63     D      63      3   24  148     3    9   25   49   67   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     F      64     F      64      4   36  148     3   11   30   54   68   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      65     S      65      4   36  148     4   15   30   54   68   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      66     S      66     10   36  148     5   14   38   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      67     V      67     10   36  148     4   13   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      68     G      68     10   36  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      69     L      69     10   36  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      70     A      70     10   36  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     F      71     F      71     10   36  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     F      72     F      72     10   36  148     4   13   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      73     A      73     10   36  148     4   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      74     A      74     10   36  148     4   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      75     A      75     10   36  148     3   14   36   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      76     A      76      8   36  148     7    8   19   39   60   74   92  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E      77     E      77      8   36  148     7   13   28   48   65   80   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      78     V      78      8   36  148     7   14   38   57   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      79     S      79      8   36  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R      80     R      80     10   36  148     7   14   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      81     A      81     10   36  148     7   13   34   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     H      82     H      82     10   36  148     7   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      83     A      83     10   36  148     7    8   17   39   61   81   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E      84     E      84     10   36  148     7    8   13   34   58   73   85  100  110  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R      85     R      85     10   36  148     7   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      86     A      86     10   36  148     7    8   12   27   48   75   92  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R      87     R      87     10   36  148     7    8   10   15   18   33   67   80   94  110  118  126  131  134  138  141  142  143  144  145 
LCS_GDT     A      88     A      88     10   36  148     7    8   10   27   57   71   83   98  107  116  122  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      89     A      89     10   36  148     5    8   18   34   57   72   88  102  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      90     G      90      5   36  148     3   15   29   49   66   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     C      91     C      91      5   36  148     5   15   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      92     S      92      5   36  148     4   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V      93     V      93      5   36  148     4   15   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     I      94     I      94      5   36  148     4    5   17   43   61   79   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     D      95     D      95      6   36  148     4   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L      96     L      96      6   36  148     4   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S      97     S      97      6   36  148     4   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G      98     G      98      6   36  148     5   15   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A      99     A      99      6   36  148     4   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     100     L     100      6   26  148     4   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E     101     E     101      6   17  148     4    6   18   46   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     P     102     P     102      6   17  148     3    9   21   48   67   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S     103     S     103      4   17  148     3    5   17   47   66   81   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V     104     V     104      4   17  148     3    5    6   24   57   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     105     A     105      4    9  148     3    5    6    8   15   29   45   63   85  108  119  126  130  134  138  140  142  143  144  145 
LCS_GDT     P     106     P     106      4    9  148     3    3   15   30   55   75   90  101  112  117  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     P     107     P     107      5    9  148     3    5   20   30   57   75   90  101  112  117  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V     108     V     108      5   15  148     6   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     M     109     M     109      5   15  148     5   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V     110     V     110      5   15  148     3    4   17   37   54   71   90  105  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S     111     S     111      5   15  148     3   10   28   52   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V     112     V     112      6   15  148     5   14   36   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     N     113     N     113      6   15  148     5   14   34   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     114     A     114      6   15  148     4    7   22   49   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E     115     E     115      6   15  148     4   14   36   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R     116     R     116      6   15  148     5   14   36   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     117     L     117      6   15  148     4   11   27   49   69   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     118     A     118      6   15  148     4   11   25   49   65   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     S     119     S     119      6   15  148     3   11   25   49   65   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     Q     120     Q     120      6   15  148     3   14   36   57   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     121     A     121      6   15  148     3   13   36   57   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     122     A     122      3   15  148     3   11   21   36   59   79   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     P     123     P     123      4   14  148     3    5   12   21   43   60   81  100  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     F     124     F     124      4   14  148     3   11   25   44   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     125     L     125      4    8  148     3    4    7   14   20   35   52   74   91  110  119  126  129  134  138  141  142  143  144  145 
LCS_GDT     L     126     L     126      4    8  148     3    4    8   18   31   53   73   90  105  115  122  129  131  134  138  141  142  143  144  145 
LCS_GDT     S     127     S     127      4    8  148     3    4    6   11   29   39   66   84  101  110  122  129  131  134  138  141  142  143  144  145 
LCS_GDT     S     128     S     128      3   22  148     6   17   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     P     129     P     129      3   22  148     5   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V     316     V     316      5   22  148     3   13   28   48   66   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     R     317     R     317      5   22  148     3    6   18   41   60   81   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     K     318     K     318      5   22  148     4   13   32   57   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G     319     G     319     16   22  148     5   14   38   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     320     A     320     16   22  148     6   16   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     321     A     321     16   22  148    13   15   24   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     322     L     322     16   22  148    13   15   21   45   68   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     N     323     N     323     16   22  148    13   18   41   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     A     324     A     324     16   22  148    13   15   30   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     V     325     V     325     16   22  148    13   15   21   27   47   76   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     326     L     326     16   22  148    13   15   21   37   55   80   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     327     L     327     16   22  148    13   15   33   59   69   83   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     G     328     G     328     16   22  148    13   15   21   30   57   79   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     E     329     E     329     16   22  148    13   15   21   24   37   56   83  100  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     330     L     330     16   22  148    13   15   21   27   54   80   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     L     331     L     331     16   22  148    13   15   21   37   64   82   94  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     I     332     I     332     16   22  148    13   15   21   27   37   56   83   98  110  118  122  129  131  134  138  141  142  143  144  145 
LCS_GDT     K     333     K     333     16   22  148    13   15   21   24   31   44   63   90  108  118  122  129  131  134  138  141  142  143  144  145 
LCS_GDT     H     334     H     334     16   22  148     3   15   16   28   55   80   93  107  112  118  123  129  131  134  138  141  142  143  144  145 
LCS_GDT     Y     335     Y     335      4   22  148     3    3    4    4    6   27   34   43   61   86   99  112  125  130  134  137  140  142  144  144 
LCS_GDT     L     336     L     336      4    4  148     0    3    4    7    8   10   12   17   19   25   48   57   69   79   91   95   99  122  124  135 
LCS_AVERAGE  LCS_A:  39.71  (   5.02   14.12  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     18     41     59     69     83     94    107    112    118    123    129    131    134    138    141    142    143    144    145 
GDT PERCENT_CA   8.78  12.16  27.70  39.86  46.62  56.08  63.51  72.30  75.68  79.73  83.11  87.16  88.51  90.54  93.24  95.27  95.95  96.62  97.30  97.97
GDT RMS_LOCAL    0.18   0.85   1.13   1.45   1.63   1.91   2.13   2.44   2.57   2.80   3.00   3.19   3.28   3.42   3.70   3.98   4.01   4.07   4.13   4.30
GDT RMS_ALL_CA  12.23   5.11   5.09   4.87   4.78   4.92   4.85   4.83   4.81   4.80   4.73   4.74   4.74   4.72   4.68   4.66   4.66   4.66   4.66   4.65

#      Molecule1      Molecule2       DISTANCE
LGA    Q       3      Q       3          3.780
LGA    P       4      P       4          1.499
LGA    L       5      L       5          3.583
LGA    N       6      N       6          0.813
LGA    V       7      V       7          1.226
LGA    A       8      A       8          0.471
LGA    V       9      V       9          1.111
LGA    V      10      V      10          1.280
LGA    G      11      G      11          1.451
LGA    A      12      A      12          1.643
LGA    T      13      T      13          2.725
LGA    G      14      G      14          1.585
LGA    S      15      S      15          1.895
LGA    V      16      V      16          3.513
LGA    G      17      G      17          4.493
LGA    E      18      E      18          2.643
LGA    A      19      A      19          1.286
LGA    L      20      L      20          3.111
LGA    V      21      V      21          2.634
LGA    G      22      G      22          1.393
LGA    L      23      L      23          2.328
LGA    L      24      L      24          1.931
LGA    D      25      D      25          1.865
LGA    E      26      E      26          3.679
LGA    R      27      R      27          9.922
LGA    D      28      D      28          8.815
LGA    F      29      F      29         13.727
LGA    P      30      P      30         15.069
LGA    L      31      L      31         12.128
LGA    H      32      H      32          8.420
LGA    R      33      R      33          1.775
LGA    L      34      L      34          1.779
LGA    H      35      H      35          3.794
LGA    L      36      L      36          3.570
LGA    L      37      L      37          1.661
LGA    A      38      A      38          2.187
LGA    S      39      S      39          3.439
LGA    A      40      A      40          2.157
LGA    E      41      E      41          4.249
LGA    S      42      S      42          6.953
LGA    A      43      A      43          6.565
LGA    G      44      G      44          5.156
LGA    Q      45      Q      45          5.547
LGA    R      46      R      46          7.034
LGA    M      47      M      47          9.027
LGA    G      48      G      48         12.521
LGA    F      49      F      49         12.411
LGA    A      50      A      50         10.778
LGA    E      51      E      51          9.779
LGA    S      52      S      52          6.328
LGA    S      53      S      53          4.491
LGA    L      54      L      54          0.748
LGA    R      55      R      55          1.445
LGA    V      56      V      56          2.364
LGA    G      57      G      57          1.352
LGA    D      58      D      58          3.867
LGA    V      59      V      59          8.418
LGA    D      60      D      60          9.836
LGA    S      61      S      61          7.114
LGA    F      62      F      62          6.071
LGA    D      63      D      63          3.849
LGA    F      64      F      64          3.136
LGA    S      65      S      65          3.218
LGA    S      66      S      66          1.870
LGA    V      67      V      67          2.170
LGA    G      68      G      68          1.326
LGA    L      69      L      69          1.144
LGA    A      70      A      70          1.055
LGA    F      71      F      71          0.960
LGA    F      72      F      72          1.720
LGA    A      73      A      73          1.461
LGA    A      74      A      74          1.574
LGA    A      75      A      75          1.489
LGA    A      76      A      76          3.741
LGA    E      77      E      77          2.924
LGA    V      78      V      78          1.881
LGA    S      79      S      79          1.661
LGA    R      80      R      80          1.760
LGA    A      81      A      81          1.471
LGA    H      82      H      82          0.442
LGA    A      83      A      83          3.238
LGA    E      84      E      84          5.075
LGA    R      85      R      85          1.945
LGA    A      86      A      86          3.785
LGA    R      87      R      87          6.963
LGA    A      88      A      88          5.731
LGA    A      89      A      89          4.305
LGA    G      90      G      90          3.592
LGA    C      91      C      91          2.169
LGA    S      92      S      92          2.391
LGA    V      93      V      93          1.689
LGA    I      94      I      94          3.647
LGA    D      95      D      95          1.334
LGA    L      96      L      96          1.050
LGA    S      97      S      97          0.932
LGA    G      98      G      98          1.417
LGA    A      99      A      99          0.838
LGA    L     100      L     100          0.727
LGA    E     101      E     101          2.711
LGA    P     102      P     102          3.191
LGA    S     103      S     103          3.715
LGA    V     104      V     104          3.334
LGA    A     105      A     105          6.406
LGA    P     106      P     106          5.054
LGA    P     107      P     107          4.769
LGA    V     108      V     108          1.524
LGA    M     109      M     109          2.195
LGA    V     110      V     110          4.415
LGA    S     111      S     111          2.673
LGA    V     112      V     112          2.097
LGA    N     113      N     113          2.282
LGA    A     114      A     114          2.644
LGA    E     115      E     115          1.531
LGA    R     116      R     116          1.781
LGA    L     117      L     117          3.057
LGA    A     118      A     118          3.711
LGA    S     119      S     119          3.629
LGA    Q     120      Q     120          1.904
LGA    A     121      A     121          1.831
LGA    A     122      A     122          3.975
LGA    P     123      P     123          5.073
LGA    F     124      F     124          2.813
LGA    L     125      L     125          7.048
LGA    L     126      L     126          5.556
LGA    S     127      S     127          6.270
LGA    S     128      S     128          1.233
LGA    P     129      P     129          1.197
LGA    V     316      V     316          2.997
LGA    R     317      R     317          3.530
LGA    K     318      K     318          2.424
LGA    G     319      G     319          1.180
LGA    A     320      A     320          1.345
LGA    A     321      A     321          2.342
LGA    L     322      L     322          2.799
LGA    N     323      N     323          1.182
LGA    A     324      A     324          1.970
LGA    V     325      V     325          3.966
LGA    L     326      L     326          3.486
LGA    L     327      L     327          1.428
LGA    G     328      G     328          3.716
LGA    E     329      E     329          5.064
LGA    L     330      L     330          3.712
LGA    L     331      L     331          3.138
LGA    I     332      I     332          5.671
LGA    K     333      K     333          6.062
LGA    H     334      H     334          3.875
LGA    Y     335      Y     335          8.970
LGA    L     336      L     336         14.854

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0    107    2.44    54.899    48.130     4.216

LGA_LOCAL      RMSD =  2.438  Number of atoms =  107  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.786  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  4.649  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.182978 * X  +  -0.899498 * Y  +   0.396764 * Z  + -12.515897
  Y_new =   0.147738 * X  +   0.373837 * Y  +   0.915653 * Z  +  72.986259
  Z_new =  -0.971953 * X  +   0.226162 * Y  +   0.064486 * Z  +   0.188361 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.293034   -1.848559  [ DEG:    74.0854   -105.9146 ]
  Theta =   1.333397    1.808196  [ DEG:    76.3980    103.6020 ]
  Phi   =   2.462351   -0.679242  [ DEG:   141.0823    -38.9177 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0298TS393_1-D1                               
REMARK     2: T0298_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0298TS393_1-D1.T0298_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0  107   2.44  48.130     4.65
REMARK  ---------------------------------------------------------- 
MOLECULE T0298TS393_1-D1
PFRMAT TS
TARGET T0298
MODEL 1
PARENT N/A
ATOM      3  CA  GLN     3     -39.566  68.991 -13.785  1.00 25.00           C
ATOM      4  CA  PRO     4     -36.579  67.521 -15.645  1.00 25.00           C
ATOM      5  CA  LEU     5     -32.965  66.369 -15.490  1.00 25.00           C
ATOM      6  CA  ASN     6     -29.509  66.430 -13.850  1.00 25.00           C
ATOM      7  CA  VAL     7     -26.940  65.742 -11.217  1.00 25.00           C
ATOM      8  CA  ALA     8     -23.748  64.599 -12.827  1.00 25.00           C
ATOM      9  CA  VAL     9     -20.822  63.088 -10.955  1.00 25.00           C
ATOM     10  CA  VAL    10     -18.037  64.257 -13.263  1.00 25.00           C
ATOM     11  CA  GLY    11     -15.105  63.173 -11.078  1.00 25.00           C
ATOM     12  CA  ALA    12     -16.429  61.139  -8.171  1.00 25.00           C
ATOM     13  CA  THR    13     -15.881  58.931  -5.123  1.00 25.00           C
ATOM     14  CA  GLY    14     -12.591  60.448  -4.082  1.00 25.00           C
ATOM     15  CA  SER    15     -14.448  61.580  -0.982  1.00 25.00           C
ATOM     16  CA  VAL    16     -16.281  64.122   1.218  1.00 25.00           C
ATOM     17  CA  GLY    17     -17.985  65.607  -1.874  1.00 25.00           C
ATOM     18  CA  GLU    18     -19.052  62.104  -2.998  1.00 25.00           C
ATOM     19  CA  ALA    19     -20.471  61.392   0.488  1.00 25.00           C
ATOM     20  CA  LEU    20     -22.403  64.698   0.404  1.00 25.00           C
ATOM     21  CA  VAL    21     -23.807  63.818  -3.049  1.00 25.00           C
ATOM     22  CA  GLY    22     -24.880  60.374  -1.761  1.00 25.00           C
ATOM     23  CA  LEU    23     -26.597  62.005   1.247  1.00 25.00           C
ATOM     24  CA  LEU    24     -28.420  64.438  -1.081  1.00 25.00           C
ATOM     25  CA  ASP    25     -29.562  61.518  -3.278  1.00 25.00           C
ATOM     26  CA  GLU    26     -30.835  59.655  -0.184  1.00 25.00           C
ATOM     27  CA  ARG    27     -31.356  56.166  -1.529  1.00 25.00           C
ATOM     28  CA  ASP    28     -33.701  56.501  -4.550  1.00 25.00           C
ATOM     29  CA  PHE    29     -32.636  53.308  -6.437  1.00 25.00           C
ATOM     30  CA  PRO    30     -31.118  53.024  -9.956  1.00 25.00           C
ATOM     31  CA  LEU    31     -29.437  54.671 -12.983  1.00 25.00           C
ATOM     32  CA  HIS    32     -29.542  57.706 -15.238  1.00 25.00           C
ATOM     33  CA  ARG    33     -30.445  60.518 -12.832  1.00 25.00           C
ATOM     34  CA  LEU    34     -26.846  60.095 -11.595  1.00 25.00           C
ATOM     35  CA  HIS    35     -23.412  58.532 -11.160  1.00 25.00           C
ATOM     36  CA  LEU    36     -19.978  57.652  -9.682  1.00 25.00           C
ATOM     37  CA  LEU    37     -18.476  58.770 -13.008  1.00 25.00           C
ATOM     38  CA  ALA    38     -14.899  57.931 -12.032  1.00 25.00           C
ATOM     39  CA  SER    39     -11.171  57.977 -12.483  1.00 25.00           C
ATOM     40  CA  ALA    40     -11.578  56.565 -15.950  1.00 25.00           C
ATOM     41  CA  GLU    41     -12.006  53.717 -18.440  1.00 25.00           C
ATOM     42  CA  SER    42     -14.303  50.684 -18.495  1.00 25.00           C
ATOM     43  CA  ALA    43     -13.630  47.601 -16.460  1.00 25.00           C
ATOM     44  CA  GLY    44     -16.977  46.045 -17.539  1.00 25.00           C
ATOM     45  CA  GLN    45     -19.782  48.450 -16.530  1.00 25.00           C
ATOM     46  CA  ARG    46     -23.592  48.444 -15.989  1.00 25.00           C
ATOM     47  CA  MET    47     -25.917  51.203 -14.876  1.00 25.00           C
ATOM     48  CA  GLY    48     -29.577  50.918 -16.065  1.00 25.00           C
ATOM     49  CA  PHE    49     -33.152  51.961 -15.140  1.00 25.00           C
ATOM     50  CA  ALA    50     -34.892  54.505 -13.008  1.00 25.00           C
ATOM     51  CA  GLU    51     -33.346  57.012 -10.535  1.00 25.00           C
ATOM     52  CA  SER    52     -30.388  57.461  -8.187  1.00 25.00           C
ATOM     53  CA  SER    53     -27.391  55.124  -8.351  1.00 25.00           C
ATOM     54  CA  LEU    54     -24.889  53.241 -10.410  1.00 25.00           C
ATOM     55  CA  ARG    55     -21.747  52.746 -12.462  1.00 25.00           C
ATOM     56  CA  VAL    56     -20.687  54.696 -15.584  1.00 25.00           C
ATOM     57  CA  GLY    57     -18.917  56.927 -18.134  1.00 25.00           C
ATOM     58  CA  ASP    58     -18.467  58.058 -21.798  1.00 25.00           C
ATOM     59  CA  VAL    59     -22.070  57.931 -23.039  1.00 25.00           C
ATOM     60  CA  ASP    60     -23.131  60.073 -26.000  1.00 25.00           C
ATOM     61  CA  SER    61     -21.859  62.450 -28.654  1.00 25.00           C
ATOM     62  CA  PHE    62     -18.240  62.251 -27.417  1.00 25.00           C
ATOM     63  CA  ASP    63     -19.414  62.814 -23.816  1.00 25.00           C
ATOM     64  CA  PHE    64     -21.743  65.701 -22.910  1.00 25.00           C
ATOM     65  CA  SER    65     -24.184  67.730 -24.980  1.00 25.00           C
ATOM     66  CA  SER    66     -26.591  66.821 -22.156  1.00 25.00           C
ATOM     67  CA  VAL    67     -25.593  67.771 -18.559  1.00 25.00           C
ATOM     68  CA  GLY    68     -27.360  70.333 -16.312  1.00 25.00           C
ATOM     69  CA  LEU    69     -25.011  70.327 -13.307  1.00 25.00           C
ATOM     70  CA  ALA    70     -21.553  69.250 -12.025  1.00 25.00           C
ATOM     71  CA  PHE    71     -19.866  68.536  -8.690  1.00 25.00           C
ATOM     72  CA  PHE    72     -16.453  67.078  -9.555  1.00 25.00           C
ATOM     73  CA  ALA    73     -13.822  66.011  -7.068  1.00 25.00           C
ATOM     74  CA  ALA    74     -10.794  64.949  -9.035  1.00 25.00           C
ATOM     75  CA  ALA    75      -8.459  67.378 -10.770  1.00 25.00           C
ATOM     76  CA  ALA    76      -5.670  67.308 -13.307  1.00 25.00           C
ATOM     77  CA  GLU    77      -6.565  66.398 -16.932  1.00 25.00           C
ATOM     78  CA  VAL    78     -10.292  65.567 -16.651  1.00 25.00           C
ATOM     79  CA  SER    79     -10.961  68.989 -15.065  1.00 25.00           C
ATOM     80  CA  ARG    80      -9.030  70.705 -17.894  1.00 25.00           C
ATOM     81  CA  ALA    81     -11.062  68.760 -20.492  1.00 25.00           C
ATOM     82  CA  HIS    82     -14.317  69.792 -18.757  1.00 25.00           C
ATOM     83  CA  ALA    83     -13.184  73.450 -18.756  1.00 25.00           C
ATOM     84  CA  GLU    84     -12.353  73.220 -22.488  1.00 25.00           C
ATOM     85  CA  ARG    85     -15.803  71.714 -23.189  1.00 25.00           C
ATOM     86  CA  ALA    86     -17.466  74.540 -21.209  1.00 25.00           C
ATOM     87  CA  ARG    87     -15.468  77.137 -23.192  1.00 25.00           C
ATOM     88  CA  ALA    88     -16.529  75.481 -26.479  1.00 25.00           C
ATOM     89  CA  ALA    89     -20.233  74.909 -25.653  1.00 25.00           C
ATOM     90  CA  GLY    90     -22.798  74.442 -22.883  1.00 25.00           C
ATOM     91  CA  CYS    91     -23.828  72.675 -19.643  1.00 25.00           C
ATOM     92  CA  SER    92     -22.741  73.769 -16.158  1.00 25.00           C
ATOM     93  CA  VAL    93     -19.602  74.167 -14.096  1.00 25.00           C
ATOM     94  CA  ILE    94     -17.477  71.985 -11.736  1.00 25.00           C
ATOM     95  CA  ASP    95     -14.748  73.527  -9.592  1.00 25.00           C
ATOM     96  CA  LEU    96     -14.733  70.951  -6.787  1.00 25.00           C
ATOM     97  CA  SER    97     -10.893  70.653  -6.940  1.00 25.00           C
ATOM     98  CA  GLY    98      -9.855  74.031  -8.367  1.00 25.00           C
ATOM     99  CA  ALA    99      -8.263  75.253 -11.578  1.00 25.00           C
ATOM    100  CA  LEU   100     -10.708  77.641 -13.216  1.00 25.00           C
ATOM    101  CA  GLU   101     -12.038  78.656  -9.813  1.00 25.00           C
ATOM    102  CA  PRO   102     -12.274  82.211 -11.082  1.00 25.00           C
ATOM    103  CA  SER   103     -11.667  82.365 -14.844  1.00 25.00           C
ATOM    104  CA  VAL   104     -14.054  85.212 -15.523  1.00 25.00           C
ATOM    105  CA  ALA   105     -17.687  85.253 -14.241  1.00 25.00           C
ATOM    106  CA  PRO   106     -18.405  82.236 -12.062  1.00 25.00           C
ATOM    107  CA  PRO   107     -18.489  81.340  -8.327  1.00 25.00           C
ATOM    108  CA  VAL   108     -17.803  81.726  -4.564  1.00 25.00           C
ATOM    109  CA  MET   109     -20.388  80.226  -2.264  1.00 25.00           C
ATOM    110  CA  VAL   110     -19.305  78.790   1.119  1.00 25.00           C
ATOM    111  CA  SER   111     -22.758  79.126   2.599  1.00 25.00           C
ATOM    112  CA  VAL   112     -21.266  82.122   4.370  1.00 25.00           C
ATOM    113  CA  ASN   113     -21.976  83.959   1.097  1.00 25.00           C
ATOM    114  CA  ALA   114     -25.685  84.493   0.279  1.00 25.00           C
ATOM    115  CA  GLU   115     -25.768  87.747  -1.741  1.00 25.00           C
ATOM    116  CA  ARG   116     -23.005  86.420  -4.038  1.00 25.00           C
ATOM    117  CA  LEU   117     -24.956  83.162  -4.542  1.00 25.00           C
ATOM    118  CA  ALA   118     -28.114  85.155  -5.391  1.00 25.00           C
ATOM    119  CA  SER   119     -26.140  87.255  -7.913  1.00 25.00           C
ATOM    120  CA  GLN   120     -23.794  86.162 -10.736  1.00 25.00           C
ATOM    121  CA  ALA   121     -26.094  85.812 -13.750  1.00 25.00           C
ATOM    122  CA  ALA   122     -28.755  83.252 -12.772  1.00 25.00           C
ATOM    123  CA  PRO   123     -25.458  81.314 -12.242  1.00 25.00           C
ATOM    124  CA  PHE   124     -23.509  78.236 -11.095  1.00 25.00           C
ATOM    125  CA  LEU   125     -24.087  74.823  -9.473  1.00 25.00           C
ATOM    126  CA  LEU   126     -21.804  75.615  -6.535  1.00 25.00           C
ATOM    127  CA  SER   127     -19.636  72.691  -5.435  1.00 25.00           C
ATOM    128  CA  SER   128     -17.469  75.258  -3.715  1.00 25.00           C
ATOM    129  CA  PRO   129     -13.992  76.275  -2.712  1.00 25.00           C
ATOM    316  CA  VAL   316     -12.073  67.267   3.356  1.00 25.00           C
ATOM    317  CA  ARG   317     -15.101  65.417   1.915  1.00 25.00           C
ATOM    318  CA  LYS   318     -17.279  66.684   4.799  1.00 25.00           C
ATOM    319  CA  GLY   319     -16.059  70.262   4.181  1.00 25.00           C
ATOM    320  CA  ALA   320     -16.870  69.920   0.453  1.00 25.00           C
ATOM    321  CA  ALA   321     -20.372  68.629   1.308  1.00 25.00           C
ATOM    322  CA  LEU   322     -20.911  71.587   3.681  1.00 25.00           C
ATOM    323  CA  ASN   323     -19.786  74.018   0.944  1.00 25.00           C
ATOM    324  CA  ALA   324     -22.204  72.384  -1.536  1.00 25.00           C
ATOM    325  CA  VAL   325     -25.053  72.688   1.004  1.00 25.00           C
ATOM    326  CA  LEU   326     -24.211  76.385   1.544  1.00 25.00           C
ATOM    327  CA  LEU   327     -24.218  76.965  -2.242  1.00 25.00           C
ATOM    328  CA  GLY   328     -27.624  75.234  -2.525  1.00 25.00           C
ATOM    329  CA  GLU   329     -28.998  77.423   0.301  1.00 25.00           C
ATOM    330  CA  LEU   330     -27.681  80.561  -1.455  1.00 25.00           C
ATOM    331  CA  LEU   331     -29.328  79.450  -4.729  1.00 25.00           C
ATOM    332  CA  ILE   332     -32.638  78.866  -2.893  1.00 25.00           C
ATOM    333  CA  LYS   333     -32.405  82.347  -1.315  1.00 25.00           C
ATOM    334  CA  HIS   334     -31.741  83.890  -4.757  1.00 25.00           C
ATOM    335  CA  TYR   335     -32.986  87.200  -3.393  1.00 25.00           C
ATOM    336  CA  LEU   336     -34.024  88.067   0.192  1.00 25.00           C
TER
END
