
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0298TS393_3-D1
# Molecule2: number of CA atoms  148 ( 1074),  selected  148 , name T0298_D1.pdb
# PARAMETERS: T0298TS393_3-D1.T0298_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148         3 - 336         4.87     4.87
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36         3 - 38          1.98     6.54
  LONGEST_CONTINUOUS_SEGMENT:    36         5 - 40          2.00     6.73
  LCS_AVERAGE:     14.51

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       319 - 334         0.66     6.36
  LCS_AVERAGE:      4.91

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     Q       3     Q       3      3   36  148     4   16   23   33   51   63   74   86   92  106  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     P       4     P       4      3   36  148     1   11   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L       5     L       5      3   36  148     1   16   26   37   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     N       6     N       6      4   36  148     4   11   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V       7     V       7      4   36  148     3   11   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A       8     A       8      4   36  148     7   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V       9     V       9      4   36  148     3    9   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      10     V      10      4   36  148     3   13   28   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      11     G      11      7   36  148     4   17   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      12     A      12      7   36  148     3    7   20   37   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     T      13     T      13     14   36  148     3    7   12   37   49   60   74   86   94  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      14     G      14     14   36  148     3    5   26   44   55   64   74   86   92  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      15     S      15     14   36  148    12   19   27   44   55   65   74   86   90  104  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      16     V      16     14   36  148    12   19   27   44   55   65   74   86   96  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      17     G      17     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     E      18     E      18     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      19     A      19     14   36  148    12   19   28   44   55   65   74   86   94  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      20     L      20     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      21     V      21     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      22     G      22     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      23     L      23     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      24     L      24     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     D      25     D      25     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     E      26     E      26     14   36  148    12   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     R      27     R      27     14   36  148     3    4   11   26   42   60   74   84   90  102  113  123  128  133  136  140  142  143  145  147 
LCS_GDT     D      28     D      28      4   36  148     3   11   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     F      29     F      29      4   36  148     9   15   23   32   48   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     P      30     P      30      4   36  148     7   19   26   38   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      31     L      31      4   36  148     3    6   10   21   33   54   72   86   90  106  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     H      32     H      32      4   36  148     3    9   20   36   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     R      33     R      33      4   36  148     3    7   16   28   51   61   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      34     L      34      4   36  148     3    7   16   31   51   61   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     H      35     H      35      4   36  148     3    7   20   31   51   61   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      36     L      36      4   36  148     6   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      37     L      37      4   36  148     6   19   27   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      38     A      38      4   36  148     3    6   14   31   47   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      39     S      39      4   36  148     3    8   23   41   53   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      40     A      40      4   36  148     3    6   22   44   55   64   74   84   90  107  114  123  128  133  136  140  142  143  145  147 
LCS_GDT     E      41     E      41      4    5  148     4    8   17   31   45   60   73   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      42     S      42      4    7  148     4    4   15   24   34   44   56   77   92  104  114  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      43     A      43      4    7  148     4    4    4    6    9   10   15   48   70   92  112  121  127  133  136  140  142  143  145  147 
LCS_GDT     G      44     G      44      4    7  148     4    4    7    7   17   32   54   78   93  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     Q      45     Q      45      4   14  148     3    9   15   25   34   54   68   84   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     R      46     R      46      4   14  148     3   10   18   32   47   64   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     M      47     M      47      4   14  148     3    7   18   31   47   64   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      48     G      48      5   14  148     3    9   18   31   47   64   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     F      49     F      49      5   14  148     3    7   14   25   43   61   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      50     A      50      5   14  148     3    5    8   14   19   31   50   64   86  103  114  123  129  133  136  140  142  143  145  147 
LCS_GDT     E      51     E      51      5   14  148     3    5   13   19   26   45   60   79   90  104  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      52     S      52      5   14  148     1    7   14   23   43   58   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      53     S      53      5   14  148     4   10   18   35   49   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      54     L      54      5   14  148     4   10   21   36   52   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     R      55     R      55      4   14  148     3   10   23   38   52   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      56     V      56      4   14  148     3    8   23   36   52   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      57     G      57      4   14  148     4   10   23   37   52   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     D      58     D      58      4   14  148     1    6   12   25   38   56   72   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      59     V      59      4    8  148     3    4    5   10   16   43   45   58   78   98  111  120  129  133  136  140  142  143  145  147 
LCS_GDT     D      60     D      60      3    6  148     3    3    6    6    6   13   24   39   50   71   89  107  117  125  134  139  140  143  145  147 
LCS_GDT     S      61     S      61      3    6  148     3    3    7   18   34   44   59   79   92  106  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     F      62     F      62      3    4  148     3    3    8   11   19   27   42   63   87  102  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     D      63     D      63      3   23  148     3    6   22   43   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     F      64     F      64      4   23  148     4   19   23   38   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      65     S      65      4   23  148     4    6   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      66     S      66      4   23  148     4   10   23   38   51   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      67     V      67      6   23  148     4    7   14   35   52   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      68     G      68      6   23  148     4   11   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      69     L      69      6   23  148     4    9   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      70     A      70      6   23  148     3   10   26   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     F      71     F      71      6   23  148     3    6   19   41   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     F      72     F      72      6   23  148     3    6   13   26   42   60   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      73     A      73      0   23  148     4   11   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      74     A      74      3   23  148     0    4   19   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      75     A      75      4   23  148     6   19   26   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      76     A      76      4   23  148     4   11   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     E      77     E      77      7   23  148     6   15   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      78     V      78      7   23  148     6   10   23   41   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      79     S      79      7   23  148     6    8   20   27   51   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     R      80     R      80      9   23  148     6    6   14   31   51   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      81     A      81      9   23  148     6   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     H      82     H      82      9   23  148     7   19   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      83     A      83      9   23  148    11   16   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     E      84     E      84      9   23  148     7    8   20   43   55   65   74   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     R      85     R      85      9   23  148     7    8   27   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      86     A      86      9   22  148     7    8   13   31   47   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     R      87     R      87      9   21  148     7    8   13   24   36   57   68   81   92  107  114  123  128  133  136  140  142  143  145  147 
LCS_GDT     A      88     A      88      9   21  148     7    8   10   20   35   52   65   78   88  100  112  121  126  132  134  138  141  143  145  147 
LCS_GDT     A      89     A      89      9   21  148     3    4   10   16   30   43   55   73   83   91  112  121  126  132  135  140  142  143  145  147 
LCS_GDT     G      90     G      90      9   21  148     1    6   13   31   43   58   73   80   90  107  114  123  128  133  136  140  142  143  145  147 
LCS_GDT     C      91     C      91      4   21  148     2    6   13   30   43   58   73   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      92     S      92      5   21  148     3    9   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V      93     V      93      5   21  148     4   10   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     I      94     I      94      5   21  148     3    5   15   25   36   56   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     D      95     D      95      5   21  148     4   10   26   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L      96     L      96      5   21  148     4   11   26   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S      97     S      97      4   21  148     3    5   26   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G      98     G      98      4    9  148     3    5   20   36   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A      99     A      99      4    9  148     3    5   10   26   35   51   71   86   90  104  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     100     L     100      4    9  148     3    5   13   25   35   54   72   86   90  104  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     E     101     E     101      4    9  148     3    4   12   25   37   54   72   86   90  104  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     P     102     P     102      4    9  148     3    5   12   25   35   46   59   75   87   93  108  120  129  133  136  140  142  143  145  147 
LCS_GDT     S     103     S     103      4    9  148     3    5   12   25   35   46   61   78   88   93  111  123  129  133  136  140  142  143  145  147 
LCS_GDT     V     104     V     104      3    8  148     3    4    8   13   22   35   43   58   68   78   90  101  122  131  136  140  142  143  145  147 
LCS_GDT     A     105     A     105      5    8  148     3    4    6    6    9   16   23   32   51   58   70   80  104  111  126  134  138  141  144  147 
LCS_GDT     P     106     P     106      5    8  148     3    4    6    9   14   21   29   38   51   64   70   93  104  115  129  134  138  143  144  147 
LCS_GDT     P     107     P     107      5    8  148     4    5    8   10   16   28   33   49   64   79   88   96  104  115  129  134  141  143  145  147 
LCS_GDT     V     108     V     108      5   14  148     4    5   16   29   47   63   74   86   90  105  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     M     109     M     109      5   14  148     4    4   17   31   48   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V     110     V     110      5   14  148     4    9   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S     111     S     111      6   14  148     3    5   16   26   39   54   69   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V     112     V     112      9   14  148     3    8   13   29   40   52   68   84   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     N     113     N     113      9   14  148     3    8   14   22   32   52   64   79   88  104  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A     114     A     114      9   14  148     3    8   14   22   35   52   64   79   89  104  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     E     115     E     115      9   14  148     3    8   14   22   32   46   54   79   88  103  114  123  129  133  136  140  142  143  145  147 
LCS_GDT     R     116     R     116      9   14  148     3    8   12   22   28   46   60   79   88  102  114  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     117     L     117      9   14  148     3    8   14   22   28   46   61   79   88  103  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A     118     A     118      9   14  148     3    7   12   19   25   35   50   59   70   84  103  115  126  132  136  140  142  143  145  147 
LCS_GDT     S     119     S     119      9   14  148     3    7   12   16   23   35   43   53   68   77   90   98  114  131  136  140  142  143  145  147 
LCS_GDT     Q     120     Q     120      9   14  148     3    7   12   19   25   39   50   59   70   81   99  116  126  132  136  140  142  143  145  147 
LCS_GDT     A     121     A     121      6   14  148     3    6   12   19   25   39   50   66   79  100  112  122  129  133  136  140  142  143  145  147 
LCS_GDT     A     122     A     122      3   13  148     0    3    6    8   11   20   39   49   74   83  111  121  129  133  136  140  142  143  145  147 
LCS_GDT     P     123     P     123      5    8  148     3    4    5    8   15   16   21   43   52   60   91   98  115  120  128  139  142  143  145  147 
LCS_GDT     F     124     F     124      5    8  148     3    4    9   12   17   29   39   58   74   96  112  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     125     L     125      5    8  148     3    4   12   19   30   52   68   86   94  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     126     L     126      5    8  148     3    9   22   40   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S     127     S     127      5    8  148     3    9   29   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     S     128     S     128      4    8  148     3    8   23   44   55   65   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     P     129     P     129      4   20  148     3    4   13   33   46   64   74   86   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V     316     V     316      5   20  148     3    4    5   11   17   28   40   56   70   85   96  111  123  131  135  139  142  143  145  147 
LCS_GDT     R     317     R     317      5   20  148     3    4    6    9   21   31   43   54   64   74   86   94  104  121  130  136  141  143  145  147 
LCS_GDT     K     318     K     318      5   20  148     3    6    8   18   32   43   50   64   76   93  104  115  124  131  136  140  142  143  145  147 
LCS_GDT     G     319     G     319     16   20  148     3    4   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A     320     A     320     16   20  148     4   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A     321     A     321     16   20  148    13   15   16   27   40   52   70   82   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     322     L     322     16   20  148    13   15   16   27   40   52   65   81   92  106  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     N     323     N     323     16   20  148    13   15   16   28   40   52   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     A     324     A     324     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     V     325     V     325     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     326     L     326     16   20  148    13   15   16   28   40   52   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     327     L     327     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     G     328     G     328     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     E     329     E     329     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     330     L     330     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     331     L     331     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     I     332     I     332     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     K     333     K     333     16   20  148    13   15   16   28   40   53   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     H     334     H     334     16   20  148     3   15   16   25   40   52   70   85   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     Y     335     Y     335      3   20  148     0    6   13   28   40   52   70   84   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_GDT     L     336     L     336      3   20  148     2    7   13   25   36   52   65   84   97  107  115  123  129  133  136  140  142  143  145  147 
LCS_AVERAGE  LCS_A:  39.81  (   4.91   14.51  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     19     29     44     55     65     74     86     97    107    115    123    129    133    136    140    142    143    145    147 
GDT PERCENT_CA   8.78  12.84  19.59  29.73  37.16  43.92  50.00  58.11  65.54  72.30  77.70  83.11  87.16  89.86  91.89  94.59  95.95  96.62  97.97  99.32
GDT RMS_LOCAL    0.18   0.62   1.17   1.42   1.65   2.00   2.22   2.64   3.06   3.27   3.54   3.73   4.01   4.08   4.22   4.41   4.50   4.54   4.66   4.83
GDT RMS_ALL_CA   6.31   7.07   6.09   6.31   6.28   5.83   5.86   5.50   5.25   5.30   5.05   5.05   4.89   4.93   4.89   4.88   4.88   4.88   4.87   4.87

#      Molecule1      Molecule2       DISTANCE
LGA    Q       3      Q       3          2.277
LGA    P       4      P       4          2.259
LGA    L       5      L       5          2.908
LGA    N       6      N       6          1.510
LGA    V       7      V       7          1.574
LGA    A       8      A       8          1.212
LGA    V       9      V       9          1.175
LGA    V      10      V      10          1.561
LGA    G      11      G      11          0.293
LGA    A      12      A      12          2.232
LGA    T      13      T      13          3.579
LGA    G      14      G      14          3.576
LGA    S      15      S      15          3.511
LGA    V      16      V      16          2.575
LGA    G      17      G      17          1.711
LGA    E      18      E      18          3.008
LGA    A      19      A      19          3.403
LGA    L      20      L      20          2.166
LGA    V      21      V      21          1.755
LGA    G      22      G      22          3.123
LGA    L      23      L      23          2.991
LGA    L      24      L      24          1.472
LGA    D      25      D      25          1.388
LGA    E      26      E      26          3.270
LGA    R      27      R      27          4.255
LGA    D      28      D      28          3.965
LGA    F      29      F      29          2.420
LGA    P      30      P      30          1.784
LGA    L      31      L      31          3.718
LGA    H      32      H      32          2.349
LGA    R      33      R      33          3.450
LGA    L      34      L      34          3.801
LGA    H      35      H      35          3.544
LGA    L      36      L      36          1.642
LGA    L      37      L      37          3.020
LGA    A      38      A      38          2.629
LGA    S      39      S      39          2.921
LGA    A      40      A      40          4.608
LGA    E      41      E      41          4.778
LGA    S      42      S      42          7.501
LGA    A      43      A      43          7.309
LGA    G      44      G      44          6.080
LGA    Q      45      Q      45          5.817
LGA    R      46      R      46          3.191
LGA    M      47      M      47          2.900
LGA    G      48      G      48          3.043
LGA    F      49      F      49          2.776
LGA    A      50      A      50          7.227
LGA    E      51      E      51          6.038
LGA    S      52      S      52          3.457
LGA    S      53      S      53          2.640
LGA    L      54      L      54          2.041
LGA    R      55      R      55          2.400
LGA    V      56      V      56          2.157
LGA    G      57      G      57          2.060
LGA    D      58      D      58          3.884
LGA    V      59      V      59          7.225
LGA    D      60      D      60         10.327
LGA    S      61      S      61          6.182
LGA    F      62      F      62          6.040
LGA    D      63      D      63          2.897
LGA    F      64      F      64          2.431
LGA    S      65      S      65          2.151
LGA    S      66      S      66          2.954
LGA    V      67      V      67          3.749
LGA    G      68      G      68          1.837
LGA    L      69      L      69          2.336
LGA    A      70      A      70          2.306
LGA    F      71      F      71          2.130
LGA    F      72      F      72          3.729
LGA    A      73      A      73          1.510
LGA    A      74      A      74          3.269
LGA    A      75      A      75          1.871
LGA    A      76      A      76          1.534
LGA    E      77      E      77          2.799
LGA    V      78      V      78          2.658
LGA    S      79      S      79          3.723
LGA    R      80      R      80          3.237
LGA    A      81      A      81          1.597
LGA    H      82      H      82          1.639
LGA    A      83      A      83          1.746
LGA    E      84      E      84          4.791
LGA    R      85      R      85          3.900
LGA    A      86      A      86          3.604
LGA    R      87      R      87          6.287
LGA    A      88      A      88          7.530
LGA    A      89      A      89          7.316
LGA    G      90      G      90          6.492
LGA    C      91      C      91          5.531
LGA    S      92      S      92          3.235
LGA    V      93      V      93          2.003
LGA    I      94      I      94          4.612
LGA    D      95      D      95          2.036
LGA    L      96      L      96          2.195
LGA    S      97      S      97          1.428
LGA    G      98      G      98          2.846
LGA    A      99      A      99          3.969
LGA    L     100      L     100          3.959
LGA    E     101      E     101          3.824
LGA    P     102      P     102          5.630
LGA    S     103      S     103          5.324
LGA    V     104      V     104          8.309
LGA    A     105      A     105         10.042
LGA    P     106      P     106          9.568
LGA    P     107      P     107          8.472
LGA    V     108      V     108          2.432
LGA    M     109      M     109          2.693
LGA    V     110      V     110          6.639
LGA    S     111      S     111          5.850
LGA    V     112      V     112          5.833
LGA    N     113      N     113          6.705
LGA    A     114      A     114          6.328
LGA    E     115      E     115          7.788
LGA    R     116      R     116          6.794
LGA    L     117      L     117          7.102
LGA    A     118      A     118         10.246
LGA    S     119      S     119         11.231
LGA    Q     120      Q     120          9.452
LGA    A     121      A     121          8.625
LGA    A     122      A     122          8.906
LGA    P     123      P     123         11.244
LGA    F     124      F     124          8.046
LGA    L     125      L     125          3.927
LGA    L     126      L     126          0.930
LGA    S     127      S     127          1.632
LGA    S     128      S     128          2.937
LGA    P     129      P     129          3.848
LGA    V     316      V     316          9.823
LGA    R     317      R     317         12.307
LGA    K     318      K     318         10.636
LGA    G     319      G     319          7.277
LGA    A     320      A     320          6.459
LGA    A     321      A     321          6.609
LGA    L     322      L     322          7.534
LGA    N     323      N     323          7.292
LGA    A     324      A     324          6.066
LGA    V     325      V     325          6.357
LGA    L     326      L     326          7.273
LGA    L     327      L     327          6.630
LGA    G     328      G     328          5.928
LGA    E     329      E     329          6.773
LGA    L     330      L     330          7.193
LGA    L     331      L     331          6.318
LGA    I     332      I     332          6.501
LGA    K     333      K     333          7.409
LGA    H     334      H     334          7.938
LGA    Y     335      Y     335          5.170
LGA    L     336      L     336          5.742

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     86    2.64    48.818    42.812     3.134

LGA_LOCAL      RMSD =  2.644  Number of atoms =   86  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.242  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  4.866  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.837766 * X  +  -0.144019 * Y  +  -0.526694 * Z  +  -9.068407
  Y_new =  -0.088678 * X  +  -0.915897 * Y  +   0.391496 * Z  +  73.675011
  Z_new =  -0.538780 * X  +   0.374688 * Y  +   0.754536 * Z  +  -1.667633 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.460909   -2.680684  [ DEG:    26.4081   -153.5919 ]
  Theta =   0.568989    2.572604  [ DEG:    32.6007    147.3994 ]
  Phi   =  -3.036134    0.105458  [ DEG:  -173.9577      6.0423 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0298TS393_3-D1                               
REMARK     2: T0298_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0298TS393_3-D1.T0298_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   86   2.64  42.812     4.87
REMARK  ---------------------------------------------------------- 
MOLECULE T0298TS393_3-D1
PFRMAT TS
TARGET T0298
MODEL 3
PARENT N/A
ATOM      3  CA  GLN     3     -39.256  70.202 -16.408  1.00 25.00           C
ATOM      4  CA  PRO     4     -35.584  69.109 -16.535  1.00 25.00           C
ATOM      5  CA  LEU     5     -32.216  67.751 -15.529  1.00 25.00           C
ATOM      6  CA  ASN     6     -28.850  66.984 -13.909  1.00 25.00           C
ATOM      7  CA  VAL     7     -26.191  66.876 -11.201  1.00 25.00           C
ATOM      8  CA  ALA     8     -23.866  64.055 -12.332  1.00 25.00           C
ATOM      9  CA  VAL     9     -20.349  64.736 -11.254  1.00 25.00           C
ATOM     10  CA  VAL    10     -16.643  65.268 -11.531  1.00 25.00           C
ATOM     11  CA  GLY    11     -15.227  62.216  -9.791  1.00 25.00           C
ATOM     12  CA  ALA    12     -16.038  59.810  -6.962  1.00 25.00           C
ATOM     13  CA  THR    13     -12.895  58.704  -5.103  1.00 25.00           C
ATOM     14  CA  GLY    14     -12.350  60.997  -2.139  1.00 25.00           C
ATOM     15  CA  SER    15     -14.792  62.820   0.135  1.00 25.00           C
ATOM     16  CA  VAL    16     -16.281  65.830  -1.704  1.00 25.00           C
ATOM     17  CA  GLY    17     -18.153  63.483  -4.081  1.00 25.00           C
ATOM     18  CA  GLU    18     -19.513  61.506  -1.097  1.00 25.00           C
ATOM     19  CA  ALA    19     -20.668  64.759   0.563  1.00 25.00           C
ATOM     20  CA  LEU    20     -22.406  65.825  -2.679  1.00 25.00           C
ATOM     21  CA  VAL    21     -24.148  62.420  -2.894  1.00 25.00           C
ATOM     22  CA  GLY    22     -25.305  62.756   0.742  1.00 25.00           C
ATOM     23  CA  LEU    23     -26.662  66.262   0.013  1.00 25.00           C
ATOM     24  CA  LEU    24     -28.533  64.928  -3.050  1.00 25.00           C
ATOM     25  CA  ASP    25     -30.026  62.103  -0.939  1.00 25.00           C
ATOM     26  CA  GLU    26     -31.135  64.637   1.711  1.00 25.00           C
ATOM     27  CA  ARG    27     -34.306  65.184  -0.251  1.00 25.00           C
ATOM     28  CA  ASP    28     -33.704  68.097  -2.595  1.00 25.00           C
ATOM     29  CA  PHE    29     -32.933  65.543  -5.265  1.00 25.00           C
ATOM     30  CA  PRO    30     -35.679  67.209  -7.367  1.00 25.00           C
ATOM     31  CA  LEU    31     -35.695  63.608  -8.754  1.00 25.00           C
ATOM     32  CA  HIS    32     -32.681  64.874 -10.774  1.00 25.00           C
ATOM     33  CA  ARG    33     -30.901  61.553 -10.072  1.00 25.00           C
ATOM     34  CA  LEU    34     -27.688  61.527  -8.077  1.00 25.00           C
ATOM     35  CA  HIS    35     -26.450  59.378 -10.968  1.00 25.00           C
ATOM     36  CA  LEU    36     -22.632  59.127 -10.829  1.00 25.00           C
ATOM     37  CA  LEU    37     -18.860  59.002 -11.261  1.00 25.00           C
ATOM     38  CA  ALA    38     -17.140  60.454 -14.374  1.00 25.00           C
ATOM     39  CA  SER    39     -14.150  58.082 -14.483  1.00 25.00           C
ATOM     40  CA  ALA    40     -12.255  54.921 -13.553  1.00 25.00           C
ATOM     41  CA  GLU    41     -13.688  52.273 -15.800  1.00 25.00           C
ATOM     42  CA  SER    42     -14.223  50.706 -19.184  1.00 25.00           C
ATOM     43  CA  ALA    43     -15.888  47.337 -18.582  1.00 25.00           C
ATOM     44  CA  GLY    44     -19.437  45.965 -18.577  1.00 25.00           C
ATOM     45  CA  GLN    45     -20.842  48.596 -16.295  1.00 25.00           C
ATOM     46  CA  ARG    46     -21.835  49.942 -12.832  1.00 25.00           C
ATOM     47  CA  MET    47     -21.504  52.149  -9.719  1.00 25.00           C
ATOM     48  CA  GLY    48     -24.668  52.040  -7.532  1.00 25.00           C
ATOM     49  CA  PHE    49     -27.189  52.864  -4.845  1.00 25.00           C
ATOM     50  CA  ALA    50     -27.168  49.512  -2.932  1.00 25.00           C
ATOM     51  CA  GLU    51     -28.622  46.963  -5.401  1.00 25.00           C
ATOM     52  CA  SER    52     -31.160  48.387  -7.763  1.00 25.00           C
ATOM     53  CA  SER    53     -28.434  49.634 -10.174  1.00 25.00           C
ATOM     54  CA  LEU    54     -26.416  52.037 -12.321  1.00 25.00           C
ATOM     55  CA  ARG    55     -24.012  54.549 -13.867  1.00 25.00           C
ATOM     56  CA  VAL    56     -20.834  56.199 -14.969  1.00 25.00           C
ATOM     57  CA  GLY    57     -20.384  56.223 -18.727  1.00 25.00           C
ATOM     58  CA  ASP    58     -19.477  59.905 -19.265  1.00 25.00           C
ATOM     59  CA  VAL    59     -22.093  59.853 -22.050  1.00 25.00           C
ATOM     60  CA  ASP    60     -24.319  61.557 -24.705  1.00 25.00           C
ATOM     61  CA  SER    61     -21.846  61.782 -27.598  1.00 25.00           C
ATOM     62  CA  PHE    62     -19.681  64.901 -27.086  1.00 25.00           C
ATOM     63  CA  ASP    63     -19.839  64.417 -23.290  1.00 25.00           C
ATOM     64  CA  PHE    64     -23.188  65.415 -21.783  1.00 25.00           C
ATOM     65  CA  SER    65     -24.943  67.837 -24.097  1.00 25.00           C
ATOM     66  CA  SER    66     -26.823  68.947 -20.963  1.00 25.00           C
ATOM     67  CA  VAL    67     -24.219  69.350 -18.242  1.00 25.00           C
ATOM     68  CA  GLY    68     -26.609  71.181 -15.888  1.00 25.00           C
ATOM     69  CA  LEU    69     -23.667  71.419 -13.415  1.00 25.00           C
ATOM     70  CA  ALA    70     -20.765  70.142 -11.250  1.00 25.00           C
ATOM     71  CA  PHE    71     -20.879  69.436  -7.504  1.00 25.00           C
ATOM     72  CA  PHE    72     -17.574  67.550  -6.965  1.00 25.00           C
ATOM     73  CA  ALA    73     -14.162  65.910  -6.592  1.00 25.00           C
ATOM     74  CA  ALA    74     -11.153  63.610  -7.013  1.00 25.00           C
ATOM     75  CA  ALA    75      -9.726  66.539  -8.921  1.00 25.00           C
ATOM     76  CA  ALA    76      -7.076  68.379 -10.859  1.00 25.00           C
ATOM     77  CA  GLU    77      -7.269  65.833 -13.660  1.00 25.00           C
ATOM     78  CA  VAL    78     -10.062  64.283 -15.773  1.00 25.00           C
ATOM     79  CA  SER    79     -12.604  66.692 -14.225  1.00 25.00           C
ATOM     80  CA  ARG    80     -10.298  69.654 -14.986  1.00 25.00           C
ATOM     81  CA  ALA    81      -9.928  68.464 -18.608  1.00 25.00           C
ATOM     82  CA  HIS    82     -13.733  68.164 -18.925  1.00 25.00           C
ATOM     83  CA  ALA    83     -14.153  71.706 -17.531  1.00 25.00           C
ATOM     84  CA  GLU    84     -11.573  73.025 -20.036  1.00 25.00           C
ATOM     85  CA  ARG    85     -13.419  71.273 -22.897  1.00 25.00           C
ATOM     86  CA  ALA    86     -16.728  72.812 -21.736  1.00 25.00           C
ATOM     87  CA  ARG    87     -15.103  76.277 -21.614  1.00 25.00           C
ATOM     88  CA  ALA    88     -13.729  75.784 -25.155  1.00 25.00           C
ATOM     89  CA  ALA    89     -17.355  76.685 -25.661  1.00 25.00           C
ATOM     90  CA  GLY    90     -19.926  77.091 -22.832  1.00 25.00           C
ATOM     91  CA  CYS    91     -20.169  75.800 -19.227  1.00 25.00           C
ATOM     92  CA  SER    92     -20.907  75.069 -15.567  1.00 25.00           C
ATOM     93  CA  VAL    93     -19.064  74.801 -12.218  1.00 25.00           C
ATOM     94  CA  ILE    94     -16.045  72.486 -11.998  1.00 25.00           C
ATOM     95  CA  ASP    95     -15.036  71.128  -8.623  1.00 25.00           C
ATOM     96  CA  LEU    96     -12.408  70.598  -5.855  1.00 25.00           C
ATOM     97  CA  SER    97     -10.094  72.352  -8.302  1.00 25.00           C
ATOM     98  CA  GLY    98      -8.910  75.429 -10.207  1.00 25.00           C
ATOM     99  CA  ALA    99     -10.598  77.568 -12.935  1.00 25.00           C
ATOM    100  CA  LEU   100     -13.504  79.683 -11.671  1.00 25.00           C
ATOM    101  CA  GLU   101     -13.105  81.455  -8.347  1.00 25.00           C
ATOM    102  CA  PRO   102     -15.296  84.257  -9.654  1.00 25.00           C
ATOM    103  CA  SER   103     -16.859  86.081 -12.588  1.00 25.00           C
ATOM    104  CA  VAL   104     -20.584  85.576 -13.000  1.00 25.00           C
ATOM    105  CA  ALA   105     -24.001  83.986 -12.429  1.00 25.00           C
ATOM    106  CA  PRO   106     -24.234  81.170  -9.923  1.00 25.00           C
ATOM    107  CA  PRO   107     -23.462  80.453  -6.217  1.00 25.00           C
ATOM    108  CA  VAL   108     -20.778  79.918  -3.595  1.00 25.00           C
ATOM    109  CA  MET   109     -19.565  77.268  -1.091  1.00 25.00           C
ATOM    110  CA  VAL   110     -17.315  77.924   1.956  1.00 25.00           C
ATOM    111  CA  SER   111     -18.457  76.630   5.310  1.00 25.00           C
ATOM    112  CA  VAL   112     -18.221  79.720   7.563  1.00 25.00           C
ATOM    113  CA  ASN   113     -20.762  82.006   5.969  1.00 25.00           C
ATOM    114  CA  ALA   114     -23.733  80.640   4.062  1.00 25.00           C
ATOM    115  CA  GLU   115     -25.770  83.879   4.232  1.00 25.00           C
ATOM    116  CA  ARG   116     -24.261  85.031   0.907  1.00 25.00           C
ATOM    117  CA  LEU   117     -25.134  81.658  -0.685  1.00 25.00           C
ATOM    118  CA  ALA   118     -28.724  81.945   0.617  1.00 25.00           C
ATOM    119  CA  SER   119     -28.989  85.485  -0.820  1.00 25.00           C
ATOM    120  CA  GLN   120     -27.372  84.596  -4.166  1.00 25.00           C
ATOM    121  CA  ALA   121     -29.274  85.197  -7.442  1.00 25.00           C
ATOM    122  CA  ALA   122     -26.265  87.090  -8.869  1.00 25.00           C
ATOM    123  CA  PRO   123     -23.235  85.175  -7.586  1.00 25.00           C
ATOM    124  CA  PHE   124     -19.880  83.358  -7.382  1.00 25.00           C
ATOM    125  CA  LEU   125     -19.630  81.103 -10.505  1.00 25.00           C
ATOM    126  CA  LEU   126     -17.929  78.096  -8.874  1.00 25.00           C
ATOM    127  CA  SER   127     -15.042  75.706  -8.125  1.00 25.00           C
ATOM    128  CA  SER   128     -13.707  76.694  -4.703  1.00 25.00           C
ATOM    129  CA  PRO   129     -10.569  74.647  -4.051  1.00 25.00           C
ATOM    316  CA  VAL   316      -4.477  65.965   2.215  1.00 25.00           C
ATOM    317  CA  ARG   317      -6.566  64.497  -0.638  1.00 25.00           C
ATOM    318  CA  LYS   318      -9.470  63.871   1.779  1.00 25.00           C
ATOM    319  CA  GLY   319      -9.227  67.477   3.045  1.00 25.00           C
ATOM    320  CA  ALA   320      -9.262  68.771  -0.559  1.00 25.00           C
ATOM    321  CA  ALA   321     -12.349  66.635  -1.321  1.00 25.00           C
ATOM    322  CA  LEU   322     -14.096  68.003   1.800  1.00 25.00           C
ATOM    323  CA  ASN   323     -13.257  71.584   0.729  1.00 25.00           C
ATOM    324  CA  ALA   324     -14.657  70.893  -2.768  1.00 25.00           C
ATOM    325  CA  VAL   325     -17.864  69.473  -1.231  1.00 25.00           C
ATOM    326  CA  LEU   326     -18.206  72.578   0.985  1.00 25.00           C
ATOM    327  CA  LEU   327     -17.734  74.839  -2.069  1.00 25.00           C
ATOM    328  CA  GLY   328     -20.412  72.869  -3.972  1.00 25.00           C
ATOM    329  CA  GLU   329     -22.807  73.212  -1.005  1.00 25.00           C
ATOM    330  CA  LEU   330     -22.154  76.984  -0.881  1.00 25.00           C
ATOM    331  CA  LEU   331     -22.839  77.251  -4.639  1.00 25.00           C
ATOM    332  CA  ILE   332     -26.110  75.306  -4.206  1.00 25.00           C
ATOM    333  CA  LYS   333     -27.143  77.635  -1.346  1.00 25.00           C
ATOM    334  CA  HIS   334     -26.368  80.690  -3.520  1.00 25.00           C
ATOM    335  CA  TYR   335     -29.975  80.402  -4.578  1.00 25.00           C
ATOM    336  CA  LEU   336     -32.476  77.720  -5.649  1.00 25.00           C
TER
END
