
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0298TS393_5-D1
# Molecule2: number of CA atoms  148 ( 1074),  selected  148 , name T0298_D1.pdb
# PARAMETERS: T0298TS393_5-D1.T0298_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   131         3 - 319         4.99    13.69
  LCS_AVERAGE:     80.05

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38         3 - 40          1.92    15.04
  LCS_AVERAGE:     15.61

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       319 - 335         0.97    30.81
  LONGEST_CONTINUOUS_SEGMENT:    17       320 - 336         0.96    31.04
  LCS_AVERAGE:      5.15

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     Q       3     Q       3      4   38  131     3   11   23   33   44   61   77   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     P       4     P       4      4   38  131     3   11   24   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L       5     L       5      4   38  131     3   11   25   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     N       6     N       6      4   38  131     3   10   21   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V       7     V       7      6   38  131     6   12   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A       8     A       8      6   38  131     6   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V       9     V       9      6   38  131     3   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      10     V      10      6   38  131     3   12   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      11     G      11      6   38  131     4   11   24   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      12     A      12      6   38  131     4   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     T      13     T      13      5   38  131     3    6   15   33   47   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      14     G      14     14   38  131     4   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      15     S      15     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      16     V      16     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      17     G      17     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     E      18     E      18     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      19     A      19     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      20     L      20     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      21     V      21     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      22     G      22     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      23     L      23     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      24     L      24     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     D      25     D      25     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     E      26     E      26     14   38  131    11   14   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     R      27     R      27     14   38  131     3    3    6   15   35   58   75   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     D      28     D      28      3   38  131     3   11   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     F      29     F      29      3   38  131     6   14   19   30   42   60   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     P      30     P      30      3   38  131     3    7   14   26   39   56   71   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      31     L      31      3   38  131     3    3    5   11   32   49   70   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     H      32     H      32      4   38  131     3   10   23   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     R      33     R      33      4   38  131     3    4   23   33   48   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      34     L      34      5   38  131     3    7   13   24   44   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     H      35     H      35      5   38  131     3    6   13   24   48   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      36     L      36      5   38  131     3   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      37     L      37      5   38  131     3    8   21   36   49   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      38     A      38      5   38  131     3   10   21   33   48   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      39     S      39      4   38  131     3    8   22   32   46   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      40     A      40      4   38  131     3    9   26   39   56   64   78   88  100  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     E      41     E      41      4    5  131     3    7   15   28   42   57   68   84  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      42     S      42      3    6  131     3    3    3    5   14   28   59   76   92  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      43     A      43      3    7  131     3    3    3    6    6    8    8   14   52  103  112  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      44     G      44      3    7  131     3    3    9   14   25   46   63   83   95  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     Q      45     Q      45      5    7  131     3    4    9   14   20   37   53   67   82  101  114  120  122  125  126  127  127  127  127  127 
LCS_GDT     R      46     R      46      5    7  131     3    4   10   18   36   52   66   83  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     M      47     M      47      5   10  131     3    4   10   18   30   52   66   83  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      48     G      48      5   11  131     3    4   14   23   36   52   66   83  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     F      49     F      49      5   11  131     3    4    9   29   38   53   66   86  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      50     A      50      4   11  131     3    4    8   14   22   34   43   58   79   91  102  113  122  125  126  127  127  127  127  127 
LCS_GDT     E      51     E      51      6   11  131     3    9   19   29   44   60   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      52     S      52      6   11  131     3    5   15   36   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      53     S      53      6   11  131     3    8   24   36   48   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      54     L      54      6   11  131     3    7   15   34   48   62   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     R      55     R      55      6   11  131     3    7   19   32   43   59   68   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      56     V      56      6   11  131     3    5    7   13   30   50   63   77   98  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      57     G      57      5   11  131     3    7   12   26   42   57   70   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     D      58     D      58      4   11  131     3    4   10   15   28   47   60   79   98  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      59     V      59      3   11  131     3    3    6    8   14   26   42   53   61   83  101  114  121  124  126  127  127  127  127  127 
LCS_GDT     D      60     D      60      3   11  131     3    3    6    6   11   19   31   44   59   75   81   91  103  117  125  127  127  127  127  127 
LCS_GDT     S      61     S      61      3   11  131     3    7   10   21   33   49   64   83  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     F      62     F      62      3    5  131     3    3    5    7   23   36   49   83  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     D      63     D      63      3   21  131     3   11   23   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     F      64     F      64      3   21  131     3   11   24   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      65     S      65      3   21  131     3   13   25   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      66     S      66      3   21  131     3    6   15   28   44   58   70   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      67     V      67      3   21  131     4    9   21   36   55   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      68     G      68      5   21  131     3    7   15   28   41   63   78   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      69     L      69      5   21  131     2    6   15   28   39   56   77   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      70     A      70      5   29  131     3    7   21   36   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     F      71     F      71      5   29  131     3    7   19   36   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     F      72     F      72      5   29  131     3    6   10   22   41   63   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      73     A      73      6   29  131     3    6   11   23   46   61   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      74     A      74      6   29  131     3   11   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      75     A      75      6   29  131     3   10   22   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      76     A      76      8   29  131     4    8   21   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     E      77     E      77      8   29  131     6    7   18   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      78     V      78      8   29  131     6    7   17   38   48   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      79     S      79      8   29  131     6   11   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     R      80     R      80      9   29  131     6   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      81     A      81      9   29  131     6   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     H      82     H      82     10   29  131     7   12   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      83     A      83     10   29  131     7   11   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     E      84     E      84     10   29  131     7   11   26   39   56   64   78   88  100  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     R      85     R      85     10   29  131     7   10   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      86     A      86     10   29  131     7   11   24   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     R      87     R      87     10   29  131     7    9   24   38   49   63   76   88   98  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      88     A      88     10   29  131     7   10   24   39   49   64   76   88   94  109  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      89     A      89     10   29  131     3    9   24   38   49   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      90     G      90     10   29  131     3   11   25   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     C      91     C      91     10   29  131     3    8   19   38   48   62   76   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      92     S      92      4   29  131     3    4   11   28   49   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V      93     V      93      4   29  131     3   10   24   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     I      94     I      94      5   29  131     3    6   20   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     D      95     D      95      5   29  131     5   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L      96     L      96      5   29  131     4   12   24   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S      97     S      97      5   29  131     3   13   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     G      98     G      98      5   29  131     3   10   26   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A      99     A      99      4   27  131     3   11   20   33   43   58   74   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L     100     L     100      4    9  131     3    4   13   25   39   49   66   85  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     E     101     E     101      4    9  131     3    7   16   32   46   61   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     P     102     P     102      4    8  131     3   11   23   33   44   58   74   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S     103     S     103      4    7  131     3   10   26   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V     104     V     104      4    8  131     3    4   10   28   38   58   70   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A     105     A     105      4   12  131     3    4    5    9   28   40   54   65   87  102  111  117  121  125  126  127  127  127  127  127 
LCS_GDT     P     106     P     106      4   12  131     3    3   23   32   44   58   74   88   97  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     P     107     P     107      4   13  131     3   12   23   33   44   58   74   88   96  110  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V     108     V     108      4   13  131     3    8   23   34   49   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     M     109     M     109      4   13  131     3    4   11   32   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V     110     V     110      4   13  131     3    3    6   25   42   55   69   81   98  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S     111     S     111      5   13  131     3    6   17   35   47   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V     112     V     112      5   13  131     3    9   24   36   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     N     113     N     113      7   13  131     4    9   20   32   43   59   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A     114     A     114      7   13  131     4    7   15   29   40   53   72   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     E     115     E     115      7   13  131     4    7   18   29   39   51   66   85  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     R     116     R     116      7   13  131     4    7   17   29   39   52   69   85  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L     117     L     117      7   13  131     4    5   18   29   38   51   66   85  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A     118     A     118      7   13  131     4    5    8   12   22   28   42   66   82   95  107  118  122  125  126  127  127  127  127  127 
LCS_GDT     S     119     S     119      7   13  131     4    5    8   10   19   30   40   64   76   92  103  115  122  125  126  127  127  127  127  127 
LCS_GDT     Q     120     Q     120      5   11  131     4    7   14   29   39   49   64   79   96  110  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A     121     A     121      5   10  131     3    3   18   29   39   51   66   84  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     A     122     A     122      4    9  131     0    3    5    7    8   21   54   69   89  104  115  120  122  125  126  127  127  127  127  127 
LCS_GDT     P     123     P     123      6    7  131     3    5    6    7   14   40   57   72   89  110  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     F     124     F     124      6    7  131     3    8   19   29   40   56   75   87  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     L     125     L     125      6    7  131     3    5    6    6   21   32   42   59   82   92  107  118  122  125  126  127  127  127  127  127 
LCS_GDT     L     126     L     126      6    7  131     3    5    6   17   30   48   66   83  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S     127     S     127      6    7  131     3    5    6   12   25   44   61   77   95  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     S     128     S     128      6    7  131     5   13   24   39   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     P     129     P     129      3    6  131     0    3   11   38   56   64   78   88  101  111  116  120  122  125  126  127  127  127  127  127 
LCS_GDT     V     316     V     316      5   21  131     3    4    5    5   12   13   20   21   22   22   34   40   57   62   71   80   90   98  112  121 
LCS_GDT     R     317     R     317      5   21  131     3    4    5    6   12   13   20   21   27   35   41   50   57   64   75   83   90   97  107  119 
LCS_GDT     K     318     K     318      5   21  131     3    4    5    9   17   18   20   21   22   30   37   46   55   62   75   81   90  100  112  121 
LCS_GDT     G     319     G     319     17   21  131     3    4   16   16   17   18   20   21   22   22   22   24   24   24   25   34   35   61   79   94 
LCS_GDT     A     320     A     320     17   21   22     4   14   16   16   17   18   20   21   22   22   22   24   24   24   30   41   47   57   66   80 
LCS_GDT     A     321     A     321     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   26   34   38   47   50   57   64   68 
LCS_GDT     L     322     L     322     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   28   33   38   45   49   56 
LCS_GDT     N     323     N     323     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     A     324     A     324     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     V     325     V     325     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     L     326     L     326     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     L     327     L     327     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     G     328     G     328     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     E     329     E     329     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     L     330     L     330     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   33 
LCS_GDT     L     331     L     331     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   32 
LCS_GDT     I     332     I     332     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   32 
LCS_GDT     K     333     K     333     17   21   22    13   14   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   32 
LCS_GDT     H     334     H     334     17   21   22     3    9   16   16   17   18   20   21   22   22   22   24   24   24   25   28   29   30   32   32 
LCS_GDT     Y     335     Y     335     17   21   22     3    3    5   15   17   18   20   21   21   21   22   24   24   24   25   25   26   30   32   32 
LCS_GDT     L     336     L     336     17   21   22     3    3    9   16   17   18   20   21   21   21   22   24   24   24   25   25   26   30   32   32 
LCS_AVERAGE  LCS_A:  33.60  (   5.15   15.61   80.05 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     14     26     39     56     64     78     88    101    111    116    120    122    125    126    127    127    127    127    127 
GDT PERCENT_CA   8.78   9.46  17.57  26.35  37.84  43.24  52.70  59.46  68.24  75.00  78.38  81.08  82.43  84.46  85.14  85.81  85.81  85.81  85.81  85.81
GDT RMS_LOCAL    0.18   0.28   1.12   1.37   1.80   1.96   2.34   2.60   3.07   3.30   3.42   3.56   3.65   3.79   3.85   3.95   3.95   3.95   3.95   3.95
GDT RMS_ALL_CA  30.82  30.74  14.25  14.08  13.97  13.93  13.95  14.21  14.03  13.98  14.01  13.96  13.99  14.03  14.03  14.02  14.02  14.02  14.02  14.02

#      Molecule1      Molecule2       DISTANCE
LGA    Q       3      Q       3          3.180
LGA    P       4      P       4          1.675
LGA    L       5      L       5          1.332
LGA    N       6      N       6          2.924
LGA    V       7      V       7          0.622
LGA    A       8      A       8          0.165
LGA    V       9      V       9          1.075
LGA    V      10      V      10          1.450
LGA    G      11      G      11          1.480
LGA    A      12      A      12          0.768
LGA    T      13      T      13          2.865
LGA    G      14      G      14          2.155
LGA    S      15      S      15          2.496
LGA    V      16      V      16          1.512
LGA    G      17      G      17          0.719
LGA    E      18      E      18          2.419
LGA    A      19      A      19          2.746
LGA    L      20      L      20          1.312
LGA    V      21      V      21          1.293
LGA    G      22      G      22          2.871
LGA    L      23      L      23          2.509
LGA    L      24      L      24          0.579
LGA    D      25      D      25          1.376
LGA    E      26      E      26          2.985
LGA    R      27      R      27          3.292
LGA    D      28      D      28          2.832
LGA    F      29      F      29          2.559
LGA    P      30      P      30          3.606
LGA    L      31      L      31          3.886
LGA    H      32      H      32          2.134
LGA    R      33      R      33          2.931
LGA    L      34      L      34          3.694
LGA    H      35      H      35          3.583
LGA    L      36      L      36          0.990
LGA    L      37      L      37          2.801
LGA    A      38      A      38          3.217
LGA    S      39      S      39          3.924
LGA    A      40      A      40          2.933
LGA    E      41      E      41          6.559
LGA    S      42      S      42          7.594
LGA    A      43      A      43          7.696
LGA    G      44      G      44          7.858
LGA    Q      45      Q      45          9.625
LGA    R      46      R      46          6.598
LGA    M      47      M      47          6.060
LGA    G      48      G      48          5.476
LGA    F      49      F      49          4.479
LGA    A      50      A      50          8.573
LGA    E      51      E      51          2.716
LGA    S      52      S      52          2.242
LGA    S      53      S      53          3.763
LGA    L      54      L      54          3.903
LGA    R      55      R      55          5.621
LGA    V      56      V      56          6.936
LGA    G      57      G      57          5.734
LGA    D      58      D      58          7.079
LGA    V      59      V      59          9.864
LGA    D      60      D      60         12.762
LGA    S      61      S      61          7.338
LGA    F      62      F      62          5.695
LGA    D      63      D      63          2.186
LGA    F      64      F      64          1.837
LGA    S      65      S      65          1.329
LGA    S      66      S      66          5.438
LGA    V      67      V      67          3.072
LGA    G      68      G      68          4.085
LGA    L      69      L      69          4.203
LGA    A      70      A      70          2.680
LGA    F      71      F      71          2.540
LGA    F      72      F      72          3.595
LGA    A      73      A      73          3.168
LGA    A      74      A      74          1.353
LGA    A      75      A      75          1.377
LGA    A      76      A      76          2.972
LGA    E      77      E      77          2.440
LGA    V      78      V      78          2.974
LGA    S      79      S      79          2.808
LGA    R      80      R      80          1.101
LGA    A      81      A      81          0.437
LGA    H      82      H      82          1.363
LGA    A      83      A      83          1.787
LGA    E      84      E      84          3.402
LGA    R      85      R      85          2.051
LGA    A      86      A      86          1.816
LGA    R      87      R      87          3.926
LGA    A      88      A      88          3.726
LGA    A      89      A      89          3.196
LGA    G      90      G      90          3.055
LGA    C      91      C      91          4.219
LGA    S      92      S      92          3.258
LGA    V      93      V      93          1.622
LGA    I      94      I      94          2.899
LGA    D      95      D      95          1.735
LGA    L      96      L      96          2.176
LGA    S      97      S      97          1.445
LGA    G      98      G      98          2.213
LGA    A      99      A      99          3.426
LGA    L     100      L     100          4.748
LGA    E     101      E     101          2.158
LGA    P     102      P     102          3.355
LGA    S     103      S     103          2.183
LGA    V     104      V     104          3.796
LGA    A     105      A     105          6.153
LGA    P     106      P     106          3.964
LGA    P     107      P     107          3.797
LGA    V     108      V     108          1.865
LGA    M     109      M     109          3.156
LGA    V     110      V     110          6.569
LGA    S     111      S     111          3.805
LGA    V     112      V     112          2.627
LGA    N     113      N     113          3.163
LGA    A     114      A     114          5.158
LGA    E     115      E     115          6.123
LGA    R     116      R     116          5.271
LGA    L     117      L     117          6.117
LGA    A     118      A     118          9.186
LGA    S     119      S     119          9.530
LGA    Q     120      Q     120          7.360
LGA    A     121      A     121          6.881
LGA    A     122      A     122          7.963
LGA    P     123      P     123          7.629
LGA    F     124      F     124          4.520
LGA    L     125      L     125          7.933
LGA    L     126      L     126          5.043
LGA    S     127      S     127          5.819
LGA    S     128      S     128          2.358
LGA    P     129      P     129          3.495
LGA    V     316      V     316         17.177
LGA    R     317      R     317         19.085
LGA    K     318      K     318         19.241
LGA    G     319      G     319         20.085
LGA    A     320      A     320         20.611
LGA    A     321      A     321         23.300
LGA    L     322      L     322         27.907
LGA    N     323      N     323         28.746
LGA    A     324      A     324         28.174
LGA    V     325      V     325         32.431
LGA    L     326      L     326         35.922
LGA    L     327      L     327         35.544
LGA    G     328      G     328         36.887
LGA    E     329      E     329         41.546
LGA    L     330      L     330         43.326
LGA    L     331      L     331         42.773
LGA    I     332      I     332         46.219
LGA    K     333      K     333         50.222
LGA    H     334      H     334         51.277
LGA    Y     335      Y     335         50.307
LGA    L     336      L     336         52.845

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     88    2.60    45.270    41.993     3.265

LGA_LOCAL      RMSD =  2.596  Number of atoms =   88  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.310  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 12.436  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.440583 * X  +  -0.189736 * Y  +   0.877432 * Z  +  -9.375155
  Y_new =   0.083417 * X  +   0.981833 * Y  +   0.170426 * Z  +  72.677139
  Z_new =  -0.893828 * X  +  -0.001894 * Y  +   0.448407 * Z  +  -1.355444 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.004225    3.137368  [ DEG:    -0.2420    179.7579 ]
  Theta =   1.105810    2.035783  [ DEG:    63.3582    116.6418 ]
  Phi   =   0.187117   -2.954475  [ DEG:    10.7210   -169.2790 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0298TS393_5-D1                               
REMARK     2: T0298_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0298TS393_5-D1.T0298_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   88   2.60  41.993    12.44
REMARK  ---------------------------------------------------------- 
MOLECULE T0298TS393_5-D1
PFRMAT TS
TARGET T0298
MODEL 5
PARENT N/A
ATOM      3  CA  GLN     3     -40.326  70.359 -14.155  1.00 25.00           C
ATOM      4  CA  PRO     4     -37.398  68.089 -13.235  1.00 25.00           C
ATOM      5  CA  LEU     5     -33.817  68.517 -12.036  1.00 25.00           C
ATOM      6  CA  ASN     6     -30.241  67.534 -11.435  1.00 25.00           C
ATOM      7  CA  VAL     7     -27.143  65.945 -12.872  1.00 25.00           C
ATOM      8  CA  ALA     8     -23.529  64.801 -13.211  1.00 25.00           C
ATOM      9  CA  VAL     9     -21.874  63.898  -9.905  1.00 25.00           C
ATOM     10  CA  VAL    10     -18.510  64.852 -11.274  1.00 25.00           C
ATOM     11  CA  GLY    11     -15.774  62.149 -11.253  1.00 25.00           C
ATOM     12  CA  ALA    12     -17.375  59.659  -8.823  1.00 25.00           C
ATOM     13  CA  THR    13     -13.968  59.825  -7.043  1.00 25.00           C
ATOM     14  CA  GLY    14     -12.536  60.958  -3.739  1.00 25.00           C
ATOM     15  CA  SER    15     -13.872  62.194  -0.336  1.00 25.00           C
ATOM     16  CA  VAL    16     -15.367  65.023  -2.442  1.00 25.00           C
ATOM     17  CA  GLY    17     -17.455  62.486  -4.410  1.00 25.00           C
ATOM     18  CA  GLU    18     -18.700  60.935  -1.137  1.00 25.00           C
ATOM     19  CA  ALA    19     -19.644  64.406   0.177  1.00 25.00           C
ATOM     20  CA  LEU    20     -21.536  65.148  -3.068  1.00 25.00           C
ATOM     21  CA  VAL    21     -23.400  61.815  -2.773  1.00 25.00           C
ATOM     22  CA  GLY    22     -24.326  62.627   0.853  1.00 25.00           C
ATOM     23  CA  LEU    23     -25.606  66.074  -0.219  1.00 25.00           C
ATOM     24  CA  LEU    24     -27.700  64.461  -2.990  1.00 25.00           C
ATOM     25  CA  ASP    25     -29.158  61.971  -0.472  1.00 25.00           C
ATOM     26  CA  GLU    26     -30.022  64.845   1.908  1.00 25.00           C
ATOM     27  CA  ARG    27     -33.772  65.282   1.230  1.00 25.00           C
ATOM     28  CA  ASP    28     -33.491  67.135  -2.016  1.00 25.00           C
ATOM     29  CA  PHE    29     -32.525  64.607  -4.750  1.00 25.00           C
ATOM     30  CA  PRO    30     -36.273  64.291  -5.304  1.00 25.00           C
ATOM     31  CA  LEU    31     -36.541  65.759  -8.803  1.00 25.00           C
ATOM     32  CA  HIS    32     -34.359  62.977 -10.044  1.00 25.00           C
ATOM     33  CA  ARG    33     -31.684  60.438 -10.896  1.00 25.00           C
ATOM     34  CA  LEU    34     -28.807  60.428  -8.367  1.00 25.00           C
ATOM     35  CA  HIS    35     -25.616  60.113 -10.445  1.00 25.00           C
ATOM     36  CA  LEU    36     -22.444  58.696 -12.130  1.00 25.00           C
ATOM     37  CA  LEU    37     -21.070  60.662 -15.094  1.00 25.00           C
ATOM     38  CA  ALA    38     -17.337  60.086 -15.565  1.00 25.00           C
ATOM     39  CA  SER    39     -15.039  57.160 -14.881  1.00 25.00           C
ATOM     40  CA  ALA    40     -13.001  54.185 -16.138  1.00 25.00           C
ATOM     41  CA  GLU    41     -14.039  53.179 -19.641  1.00 25.00           C
ATOM     42  CA  SER    42     -15.011  49.712 -18.364  1.00 25.00           C
ATOM     43  CA  ALA    43     -18.279  48.586 -20.062  1.00 25.00           C
ATOM     44  CA  GLY    44     -20.475  50.306 -22.700  1.00 25.00           C
ATOM     45  CA  GLN    45     -22.370  52.082 -19.906  1.00 25.00           C
ATOM     46  CA  ARG    46     -22.677  51.361 -16.144  1.00 25.00           C
ATOM     47  CA  MET    47     -22.504  53.366 -12.917  1.00 25.00           C
ATOM     48  CA  GLY    48     -24.207  51.740  -9.920  1.00 25.00           C
ATOM     49  CA  PHE    49     -25.440  51.947  -6.358  1.00 25.00           C
ATOM     50  CA  ALA    50     -26.341  48.642  -4.802  1.00 25.00           C
ATOM     51  CA  GLU    51     -29.822  49.520  -3.589  1.00 25.00           C
ATOM     52  CA  SER    52     -32.359  50.807  -6.063  1.00 25.00           C
ATOM     53  CA  SER    53     -30.423  51.732  -9.253  1.00 25.00           C
ATOM     54  CA  LEU    54     -29.004  53.171 -12.514  1.00 25.00           C
ATOM     55  CA  ARG    55     -27.506  54.524 -15.739  1.00 25.00           C
ATOM     56  CA  VAL    56     -25.494  57.692 -16.514  1.00 25.00           C
ATOM     57  CA  GLY    57     -24.113  57.177 -20.028  1.00 25.00           C
ATOM     58  CA  ASP    58     -22.618  60.643 -19.915  1.00 25.00           C
ATOM     59  CA  VAL    59     -25.627  62.867 -20.835  1.00 25.00           C
ATOM     60  CA  ASP    60     -26.763  63.788 -24.340  1.00 25.00           C
ATOM     61  CA  SER    61     -23.653  62.988 -26.386  1.00 25.00           C
ATOM     62  CA  PHE    62     -20.927  65.670 -26.181  1.00 25.00           C
ATOM     63  CA  ASP    63     -22.228  66.766 -22.750  1.00 25.00           C
ATOM     64  CA  PHE    64     -24.596  67.811 -19.894  1.00 25.00           C
ATOM     65  CA  SER    65     -27.074  69.596 -22.172  1.00 25.00           C
ATOM     66  CA  SER    66     -28.800  71.278 -19.251  1.00 25.00           C
ATOM     67  CA  VAL    67     -27.969  70.134 -15.734  1.00 25.00           C
ATOM     68  CA  GLY    68     -26.585  71.068 -12.330  1.00 25.00           C
ATOM     69  CA  LEU    69     -24.834  70.794  -8.990  1.00 25.00           C
ATOM     70  CA  ALA    70     -21.385  69.641 -10.137  1.00 25.00           C
ATOM     71  CA  PHE    71     -19.757  68.041  -7.129  1.00 25.00           C
ATOM     72  CA  PHE    72     -16.232  66.530  -7.496  1.00 25.00           C
ATOM     73  CA  ALA    73     -14.122  67.317 -10.546  1.00 25.00           C
ATOM     74  CA  ALA    74     -10.886  65.342  -9.922  1.00 25.00           C
ATOM     75  CA  ALA    75      -7.291  66.609 -10.426  1.00 25.00           C
ATOM     76  CA  ALA    76      -5.280  68.921 -12.625  1.00 25.00           C
ATOM     77  CA  GLU    77      -4.948  68.149 -16.363  1.00 25.00           C
ATOM     78  CA  VAL    78      -8.028  65.974 -17.032  1.00 25.00           C
ATOM     79  CA  SER    79     -10.078  68.079 -14.574  1.00 25.00           C
ATOM     80  CA  ARG    80      -8.910  71.287 -16.310  1.00 25.00           C
ATOM     81  CA  ALA    81      -9.890  69.831 -19.715  1.00 25.00           C
ATOM     82  CA  HIS    82     -13.342  68.892 -18.348  1.00 25.00           C
ATOM     83  CA  ALA    83     -13.787  72.437 -16.969  1.00 25.00           C
ATOM     84  CA  GLU    84     -12.804  73.908 -20.366  1.00 25.00           C
ATOM     85  CA  ARG    85     -15.324  71.615 -22.115  1.00 25.00           C
ATOM     86  CA  ALA    86     -18.055  72.703 -19.661  1.00 25.00           C
ATOM     87  CA  ARG    87     -17.210  76.381 -20.314  1.00 25.00           C
ATOM     88  CA  ALA    88     -17.396  75.779 -24.093  1.00 25.00           C
ATOM     89  CA  ALA    89     -21.058  74.997 -24.539  1.00 25.00           C
ATOM     90  CA  GLY    90     -22.849  75.924 -21.334  1.00 25.00           C
ATOM     91  CA  CYS    91     -21.689  75.968 -17.695  1.00 25.00           C
ATOM     92  CA  SER    92     -21.189  73.307 -14.978  1.00 25.00           C
ATOM     93  CA  VAL    93     -20.742  74.461 -11.354  1.00 25.00           C
ATOM     94  CA  ILE    94     -17.440  72.614 -10.925  1.00 25.00           C
ATOM     95  CA  ASP    95     -14.226  72.531  -8.862  1.00 25.00           C
ATOM     96  CA  LEU    96     -12.766  70.121  -6.222  1.00 25.00           C
ATOM     97  CA  SER    97      -9.601  70.988  -8.178  1.00 25.00           C
ATOM     98  CA  GLY    98      -8.970  74.560  -9.382  1.00 25.00           C
ATOM     99  CA  ALA    99     -11.060  77.037 -11.375  1.00 25.00           C
ATOM    100  CA  LEU   100     -13.480  79.452  -9.709  1.00 25.00           C
ATOM    101  CA  GLU   101     -10.726  81.874  -8.821  1.00 25.00           C
ATOM    102  CA  PRO   102     -12.376  84.899 -10.324  1.00 25.00           C
ATOM    103  CA  SER   103     -11.900  83.914 -14.018  1.00 25.00           C
ATOM    104  CA  VAL   104     -15.274  85.286 -14.958  1.00 25.00           C
ATOM    105  CA  ALA   105     -18.702  84.516 -13.510  1.00 25.00           C
ATOM    106  CA  PRO   106     -17.817  81.759 -11.018  1.00 25.00           C
ATOM    107  CA  PRO   107     -17.879  81.970  -7.289  1.00 25.00           C
ATOM    108  CA  VAL   108     -20.184  81.024  -4.448  1.00 25.00           C
ATOM    109  CA  MET   109     -17.959  78.748  -2.405  1.00 25.00           C
ATOM    110  CA  VAL   110     -17.581  77.270   1.114  1.00 25.00           C
ATOM    111  CA  SER   111     -19.391  78.666   4.140  1.00 25.00           C
ATOM    112  CA  VAL   112     -17.837  82.030   3.284  1.00 25.00           C
ATOM    113  CA  ASN   113     -20.637  84.522   3.216  1.00 25.00           C
ATOM    114  CA  ALA   114     -23.240  81.818   3.357  1.00 25.00           C
ATOM    115  CA  GLU   115     -25.900  84.464   2.587  1.00 25.00           C
ATOM    116  CA  ARG   116     -24.062  85.409  -0.638  1.00 25.00           C
ATOM    117  CA  LEU   117     -23.898  81.719  -1.653  1.00 25.00           C
ATOM    118  CA  ALA   118     -27.649  81.342  -0.981  1.00 25.00           C
ATOM    119  CA  SER   119     -28.366  84.447  -3.105  1.00 25.00           C
ATOM    120  CA  GLN   120     -25.582  84.893  -5.656  1.00 25.00           C
ATOM    121  CA  ALA   121     -27.315  86.298  -8.734  1.00 25.00           C
ATOM    122  CA  ALA   122     -23.810  86.366 -10.236  1.00 25.00           C
ATOM    123  CA  PRO   123     -23.915  82.620 -10.164  1.00 25.00           C
ATOM    124  CA  PHE   124     -22.985  79.095  -9.115  1.00 25.00           C
ATOM    125  CA  LEU   125     -23.035  76.183  -6.610  1.00 25.00           C
ATOM    126  CA  LEU   126     -19.407  74.945  -6.287  1.00 25.00           C
ATOM    127  CA  SER   127     -17.334  72.460  -4.290  1.00 25.00           C
ATOM    128  CA  SER   128     -14.222  74.517  -3.565  1.00 25.00           C
ATOM    129  CA  PRO   129     -10.945  76.190  -4.403  1.00 25.00           C
ATOM    316  CA  VAL   316       2.588  67.910   5.183  1.00 25.00           C
ATOM    317  CA  ARG   317       0.371  70.718   3.815  1.00 25.00           C
ATOM    318  CA  LYS   318       0.649  72.591   7.143  1.00 25.00           C
ATOM    319  CA  GLY   319       4.459  72.208   7.069  1.00 25.00           C
ATOM    320  CA  ALA   320       4.547  73.544   3.480  1.00 25.00           C
ATOM    321  CA  ALA   321       2.396  76.538   4.515  1.00 25.00           C
ATOM    322  CA  LEU   322       4.745  77.239   7.459  1.00 25.00           C
ATOM    323  CA  ASN   323       7.770  77.076   5.116  1.00 25.00           C
ATOM    324  CA  ALA   324       6.061  79.508   2.701  1.00 25.00           C
ATOM    325  CA  VAL   325       5.318  81.902   5.597  1.00 25.00           C
ATOM    326  CA  LEU   326       8.975  81.714   6.720  1.00 25.00           C
ATOM    327  CA  LEU   327      10.136  82.461   3.148  1.00 25.00           C
ATOM    328  CA  GLY   328       7.766  85.465   2.980  1.00 25.00           C
ATOM    329  CA  GLU   329       9.117  86.751   6.325  1.00 25.00           C
ATOM    330  CA  LEU   330      12.708  86.376   5.047  1.00 25.00           C
ATOM    331  CA  LEU   331      11.799  88.297   1.860  1.00 25.00           C
ATOM    332  CA  ILE   332      10.214  91.079   3.960  1.00 25.00           C
ATOM    333  CA  LYS   333      13.363  91.269   6.131  1.00 25.00           C
ATOM    334  CA  HIS   334      15.544  91.496   2.992  1.00 25.00           C
ATOM    335  CA  TYR   335      15.573  94.788   1.050  1.00 25.00           C
ATOM    336  CA  LEU   336      13.291  96.944   3.119  1.00 25.00           C
TER
END
