
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0302TS168_5
# Molecule2: number of CA atoms  132 ( 2145),  selected  132 , name T0302.pdb
# PARAMETERS: T0302TS168_5.T0302.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   132         1 - 132         3.66     3.66
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    52        19 - 70          1.90     3.98
  LONGEST_CONTINUOUS_SEGMENT:    52        20 - 71          1.98     3.90
  LCS_AVERAGE:     28.73

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        26 - 51          0.95     5.02
  LCS_AVERAGE:     10.72

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     S       1     S       1      3   15  132     3    3    7   12   14   16   18   19   21   28   38   41   47   87  106  125  125  128  130  130 
LCS_GDT     M       2     M       2      3   15  132     3    4    8   13   21   33   61   65  106  113  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     V       3     V       3      4   15  132     3    4   14   28   50   75   97  104  110  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S       4     S       4      4   15  132     3    8   15   28   50   84  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     P       5     P       5     11   15  132     7   10   34   55   78   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E       6     E       6     11   15  132     7   17   30   55   73   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E       7     E       7     11   15  132     7   10   10   13   72   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A       8     A       8     11   15  132     7   10   21   44   80   90  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     V       9     V       9     11   15  132     7   15   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      10     K      10     11   15  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     W      11     W      11     11   15  132     7   10   15   21   35   64   88   99  106  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     G      12     G      12     11   15  132     4   10   10   20   26   51   64   86   99  107  110  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      13     E      13     11   15  132     4   10   10   13   26   56   75   95  102  109  117  120  123  124  127  129  131  131  131  131 
LCS_GDT     S      14     S      14     11   15  132     6   10   30   42   57   69   88   98  104  111  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F      15     F      15     11   15  132     6    7   10   13   16   25   32   39   97  103  108  116  122  124  127  129  131  131  131  131 
LCS_GDT     D      16     D      16      6    7  132     6   15   17   34   53   79   90  102  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      17     K      17      6    7  132     6    6    6    7   40   67   99  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L      18     L      18      6   37  132     6    6    6    8    8    9   17   58   89  103  113  120  123  124  127  129  131  131  131  131 
LCS_GDT     L      19     L      19      6   52  132     6   10   19   38   54   80   95  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S      20     S      20      4   52  132     3    4   31   46   65   85   95  102  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     H      21     H      21     15   52  132     7   23   39   60   81   90   96  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     R      22     R      22     17   52  132     9   14   37   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     D      23     D      23     18   52  132     9   16   40   67   82   90  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     G      24     G      24     18   52  132     9   15   37   60   82   90  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L      25     L      25     18   52  132     9   15   37   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      26     E      26     26   52  132     9   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A      27     A      27     26   52  132     9   22   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F      28     F      28     26   52  132     9   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T      29     T      29     26   52  132     8   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     R      30     R      30     26   52  132     9   22   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F      31     F      31     26   52  132     9   22   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L      32     L      32     26   52  132     9   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      33     K      33     26   52  132     9   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T      34     T      34     26   52  132     9   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      35     E      35     26   52  132     9   23   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F      36     F      36     26   52  132     4   22   40   60   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S      37     S      37     26   52  132     4   23   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      38     E      38     26   52  132     4   21   39   65   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      39     E      39     26   52  132     4    7   19   38   66   87  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     N      40     N      40     26   52  132     5   21   39   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I      41     I      41     26   52  132     7   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      42     E      42     26   52  132     4   19   39   57   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F      43     F      43     26   52  132     9   21   39   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     W      44     W      44     26   52  132     8   21   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I      45     I      45     26   52  132     8   23   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A      46     A      46     26   52  132     9   21   39   64   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     C      47     C      47     26   52  132     8   21   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      48     E      48     26   52  132     8   21   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     D      49     D      49     26   52  132     9   21   39   63   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F      50     F      50     26   52  132     8   21   34   61   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      51     K      51     26   52  132     8   21   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      52     K      52      4   52  132     8   16   33   56   79   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S      53     S      53      4   52  132     9   19   39   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      54     K      54      4   52  132     3   20   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     G      55     G      55     16   52  132     3   13   29   53   72   90  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     P      56     P      56     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Q      57     Q      57     16   52  132    10   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Q      58     Q      58     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I      59     I      59     16   52  132     6   20   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     H      60     H      60     16   52  132     6   20   37   67   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L      61     L      61     16   52  132    10   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      62     K      62     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A      63     A      63     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      64     K      64     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A      65     A      65     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I      66     I      66     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Y      67     Y      67     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      68     E      68     16   52  132    10   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      69     K      69     16   52  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F      70     F      70     16   52  132     9   20   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I      71     I      71      6   52  132     3    4    9   18   32   65   90  104  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Q      72     Q      72      6   48  132     3    3    9   22   46   62   84  101  109  113  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T      73     T      73      6   34  132     3    4   11   18   28   40   65   91  103  110  116  120  123  124  127  129  131  131  131  131 
LCS_GDT     D      74     D      74      3   20  132     1    4   16   22   36   45   62   98  106  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A      75     A      75      3    6  132     3    4   10   23   37   61   80   94  109  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     P      76     P      76      3   16  132     3    3    3   12   34   65   78   94  107  113  116  119  122  124  127  129  131  131  131  131 
LCS_GDT     K      77     K      77      3   16  132     3    4    4    5   15   17   24   33   43   50   74   92  118  123  126  129  131  131  131  131 
LCS_GDT     E      78     E      78      3   16  132     0    3    4    4   10   12   16   33   43   56   74   81   97  123  125  128  131  131  131  131 
LCS_GDT     V      79     V      79      4   16  132     1    5   10   14   16   18   24   33   59   68  105  116  121  124  127  129  131  131  131  131 
LCS_GDT     N      80     N      80      5   16  132     3    5   10   14   16   21   38   50   64   71  101  116  119  124  127  129  131  131  131  131 
LCS_GDT     L      81     L      81      5   16  132     3    5   10   14   16   20   25   45   59   68  101  116  121  124  127  129  131  131  131  131 
LCS_GDT     D      82     D      82     11   17  132     3    4   10   14   16   24   40   50   64   75   91  113  119  123  127  129  131  131  131  131 
LCS_GDT     F      83     F      83     12   32  132    10   15   26   44   60   83   98  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     H      84     H      84     12   34  132    10   15   26   41   60   82   98  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T      85     T      85     12   36  132    10   11   25   46   71   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K      86     K      86     12   36  132    10   12   32   59   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E      87     E      87     12   36  132    10   16   30   52   78   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     V      88     V      88     12   36  132    10   17   36   65   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I      89     I      89     12   36  132    10   23   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T      90     T      90     12   36  132    10   16   39   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     N      91     N      91     12   36  132    10   16   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S      92     S      92     12   36  132    10   12   25   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I      93     I      93     12   36  132     3   12   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T      94     T      94     12   36  132     4   12   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Q      95     Q      95      5   36  132     5   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     P      96     P      96      5   36  132     4    8   23   53   81   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T      97     T      97      5   36  132     6   18   39   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L      98     L      98      4   36  132     4   13   24   39   64   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     H      99     H      99      4   36  132     4    4    5   10   24   33   59   93  105  113  116  120  123  124  127  129  131  131  131  131 
LCS_GDT     S     100     S     100     15   36  132     4    7   11   33   57   87  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F     101     F     101     17   36  132     4   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     D     102     D     102     17   36  132     6   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A     103     A     103     17   36  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     A     104     A     104     17   36  132    11   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Q     105     Q     105     17   36  132     9   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S     106     S     106     17   36  132    11   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     R     107     R     107     17   36  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     V     108     V     108     17   36  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Y     109     Y     109     17   36  132    12   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Q     110     Q     110     17   36  132    11   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L     111     L     111     17   36  132    11   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     M     112     M     112     17   36  132    11   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E     113     E     113     17   36  132    11   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Q     114     Q     114     17   36  132    11   26   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     D     115     D     115     17   36  132     4   20   39   58   82   90  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S     116     S     116     17   36  132     7   23   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Y     117     Y     117     17   36  132     5   19   37   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     T     118     T     118      6   36  132     5    9   37   65   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     R     119     R     119      6   36  132     5   11   37   65   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     F     120     F     120     11   36  132     7   21   30   65   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L     121     L     121     11   36  132     5   13   36   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     K     122     K     122     11   35  132     3    9   33   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     S     123     S     123     11   32  132     3    5   15   27   74   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     D     124     D     124     11   32  132     3   14   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     I     125     I     125     11   32  132     6   11   28   59   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     Y     126     Y     126     11   32  132     6   14   40   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L     127     L     127     11   32  132     6   14   39   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     D     128     D     128     11   32  132     6    9   28   54   78   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     L     129     L     129     11   32  132     6   11   33   60   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     M     130     M     130     11   32  132     6   15   41   68   82   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     E     131     E     131     10   32  132     3    8   15   28   72   91  100  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_GDT     G     132     G     132      3   32  132     3   20   39   50   74   90   97  105  111  115  118  120  123  124  127  129  131  131  131  131 
LCS_AVERAGE  LCS_A:  46.48  (  10.72   28.73  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     26     41     68     82     91    100    105    111    115    118    120    123    124    127    129    131    131    131    131 
GDT PERCENT_CA   9.09  19.70  31.06  51.52  62.12  68.94  75.76  79.55  84.09  87.12  89.39  90.91  93.18  93.94  96.21  97.73  99.24  99.24  99.24  99.24
GDT RMS_LOCAL    0.33   0.62   1.03   1.46   1.64   1.88   2.05   2.19   2.39   2.55   2.67   2.77   2.95   3.02   3.22   3.35   3.54   3.54   3.54   3.54
GDT RMS_ALL_CA   3.95   4.06   3.86   3.76   3.78   3.70   3.72   3.70   3.69   3.68   3.69   3.68   3.69   3.68   3.67   3.67   3.66   3.66   3.66   3.66

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      S       1         10.665
LGA    M       2      M       2          5.369
LGA    V       3      V       3          4.422
LGA    S       4      S       4          3.999
LGA    P       5      P       5          3.070
LGA    E       6      E       6          3.569
LGA    E       7      E       7          3.483
LGA    A       8      A       8          2.896
LGA    V       9      V       9          2.053
LGA    K      10      K      10          1.425
LGA    W      11      W      11          5.416
LGA    G      12      G      12          7.360
LGA    E      13      E      13          6.376
LGA    S      14      S      14          6.301
LGA    F      15      F      15          7.940
LGA    D      16      D      16          4.942
LGA    K      17      K      17          3.905
LGA    L      18      L      18          6.838
LGA    L      19      L      19          3.830
LGA    S      20      S      20          4.875
LGA    H      21      H      21          3.587
LGA    R      22      R      22          2.744
LGA    D      23      D      23          3.029
LGA    G      24      G      24          2.876
LGA    L      25      L      25          2.141
LGA    E      26      E      26          1.767
LGA    A      27      A      27          2.119
LGA    F      28      F      28          1.215
LGA    T      29      T      29          0.809
LGA    R      30      R      30          1.230
LGA    F      31      F      31          0.642
LGA    L      32      L      32          0.432
LGA    K      33      K      33          1.319
LGA    T      34      T      34          1.532
LGA    E      35      E      35          2.013
LGA    F      36      F      36          3.396
LGA    S      37      S      37          2.641
LGA    E      38      E      38          2.723
LGA    E      39      E      39          4.221
LGA    N      40      N      40          2.145
LGA    I      41      I      41          1.317
LGA    E      42      E      42          3.071
LGA    F      43      F      43          1.694
LGA    W      44      W      44          1.471
LGA    I      45      I      45          2.068
LGA    A      46      A      46          2.249
LGA    C      47      C      47          1.303
LGA    E      48      E      48          1.564
LGA    D      49      D      49          2.353
LGA    F      50      F      50          2.157
LGA    K      51      K      51          0.735
LGA    K      52      K      52          2.776
LGA    S      53      S      53          1.295
LGA    K      54      K      54          1.750
LGA    G      55      G      55          3.975
LGA    P      56      P      56          1.629
LGA    Q      57      Q      57          1.521
LGA    Q      58      Q      58          1.533
LGA    I      59      I      59          1.845
LGA    H      60      H      60          2.397
LGA    L      61      L      61          1.873
LGA    K      62      K      62          1.332
LGA    A      63      A      63          1.186
LGA    K      64      K      64          1.637
LGA    A      65      A      65          1.340
LGA    I      66      I      66          1.364
LGA    Y      67      Y      67          1.055
LGA    E      68      E      68          1.408
LGA    K      69      K      69          1.228
LGA    F      70      F      70          1.775
LGA    I      71      I      71          4.553
LGA    Q      72      Q      72          5.104
LGA    T      73      T      73          6.645
LGA    D      74      D      74          5.428
LGA    A      75      A      75          5.350
LGA    P      76      P      76          7.586
LGA    K      77      K      77         10.348
LGA    E      78      E      78         10.462
LGA    V      79      V      79          7.971
LGA    N      80      N      80          8.443
LGA    L      81      L      81          8.032
LGA    D      82      D      82          8.541
LGA    F      83      F      83          4.155
LGA    H      84      H      84          4.387
LGA    T      85      T      85          3.353
LGA    K      86      K      86          2.075
LGA    E      87      E      87          2.453
LGA    V      88      V      88          1.200
LGA    I      89      I      89          0.950
LGA    T      90      T      90          1.583
LGA    N      91      N      91          1.852
LGA    S      92      S      92          2.332
LGA    I      93      I      93          1.791
LGA    T      94      T      94          1.224
LGA    Q      95      Q      95          0.908
LGA    P      96      P      96          2.935
LGA    T      97      T      97          1.666
LGA    L      98      L      98          3.737
LGA    H      99      H      99          5.925
LGA    S     100      S     100          3.830
LGA    F     101      F     101          1.741
LGA    D     102      D     102          0.909
LGA    A     103      A     103          1.100
LGA    A     104      A     104          1.201
LGA    Q     105      Q     105          1.184
LGA    S     106      S     106          1.794
LGA    R     107      R     107          1.590
LGA    V     108      V     108          1.298
LGA    Y     109      Y     109          1.430
LGA    Q     110      Q     110          2.094
LGA    L     111      L     111          1.807
LGA    M     112      M     112          1.755
LGA    E     113      E     113          2.177
LGA    Q     114      Q     114          2.254
LGA    D     115      D     115          3.314
LGA    S     116      S     116          1.471
LGA    Y     117      Y     117          1.658
LGA    T     118      T     118          1.939
LGA    R     119      R     119          1.999
LGA    F     120      F     120          2.146
LGA    L     121      L     121          1.814
LGA    K     122      K     122          2.214
LGA    S     123      S     123          3.551
LGA    D     124      D     124          2.150
LGA    I     125      I     125          2.739
LGA    Y     126      Y     126          1.784
LGA    L     127      L     127          1.880
LGA    D     128      D     128          3.123
LGA    L     129      L     129          2.706
LGA    M     130      M     130          1.237
LGA    E     131      E     131          3.558
LGA    G     132      G     132          3.632

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0    105    2.19    62.121    57.860     4.589

LGA_LOCAL      RMSD =  2.188  Number of atoms =  105  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.686  Number of atoms =  132 
Std_ALL_ATOMS  RMSD =  3.661  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.524239 * X  +  -0.177801 * Y  +  -0.832802 * Z  + 122.814568
  Y_new =   0.738638 * X  +   0.391732 * Y  +  -0.548598 * Z  +  -3.918445
  Z_new =   0.423777 * X  +  -0.902736 * Y  +  -0.074031 * Z  +   0.162807 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.652621    1.488972  [ DEG:   -94.6882     85.3118 ]
  Theta =  -0.437611   -2.703982  [ DEG:   -25.0732   -154.9267 ]
  Phi   =   2.188028   -0.953565  [ DEG:   125.3648    -54.6352 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0302TS168_5                                  
REMARK     2: T0302.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0302TS168_5.T0302.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0  105   2.19  57.860     3.66
REMARK  ---------------------------------------------------------- 
MOLECULE T0302TS168_5
PFRMAT TS
TARGET T0302
MODEL 5
PARENT N/A
ATOM      1  CA  SER     1     148.563   5.478   4.799  1.00 25.00           C
ATOM      2  CA  MET     2     145.871   8.197   4.879  1.00 25.00           C
ATOM      3  CA  VAL     3     143.691   9.671   2.056  1.00 25.00           C
ATOM      4  CA  SER     4     144.201  11.739  -1.134  1.00 25.00           C
ATOM      5  CA  PRO     5     142.177  12.461  -4.205  1.00 25.00           C
ATOM      6  CA  GLU     6     141.114  10.695  -7.433  1.00 25.00           C
ATOM      7  CA  GLU     7     142.855   7.485  -6.279  1.00 25.00           C
ATOM      8  CA  ALA     8     141.076   7.706  -2.896  1.00 25.00           C
ATOM      9  CA  VAL     9     137.713   8.180  -4.667  1.00 25.00           C
ATOM     10  CA  LYS    10     138.422   5.134  -6.878  1.00 25.00           C
ATOM     11  CA  TRP    11     139.299   3.059  -3.781  1.00 25.00           C
ATOM     12  CA  GLY    12     136.047   4.165  -2.088  1.00 25.00           C
ATOM     13  CA  GLU    13     134.060   3.197  -5.215  1.00 25.00           C
ATOM     14  CA  SER    14     135.763  -0.232  -5.266  1.00 25.00           C
ATOM     15  CA  PHE    15     134.919  -0.732  -1.563  1.00 25.00           C
ATOM     16  CA  ASP    16     131.271   0.211  -2.242  1.00 25.00           C
ATOM     17  CA  LYS    17     131.143  -2.277  -5.151  1.00 25.00           C
ATOM     18  CA  LEU    18     132.597  -5.016  -2.905  1.00 25.00           C
ATOM     19  CA  LEU    19     129.982  -4.237  -0.218  1.00 25.00           C
ATOM     20  CA  SER    20     132.559  -4.264   2.638  1.00 25.00           C
ATOM     21  CA  HIS    21     136.167  -3.070   2.771  1.00 25.00           C
ATOM     22  CA  ARG    22     136.845  -0.262   5.246  1.00 25.00           C
ATOM     23  CA  ASP    23     136.638   3.355   6.491  1.00 25.00           C
ATOM     24  CA  GLY    24     134.863   4.390   3.259  1.00 25.00           C
ATOM     25  CA  LEU    25     132.380   1.504   3.668  1.00 25.00           C
ATOM     26  CA  GLU    26     131.711   2.559   7.288  1.00 25.00           C
ATOM     27  CA  ALA    27     131.120   6.168   6.153  1.00 25.00           C
ATOM     28  CA  PHE    28     128.688   4.947   3.458  1.00 25.00           C
ATOM     29  CA  THR    29     126.818   2.851   6.061  1.00 25.00           C
ATOM     30  CA  ARG    30     126.594   5.889   8.382  1.00 25.00           C
ATOM     31  CA  PHE    31     125.235   8.019   5.504  1.00 25.00           C
ATOM     32  CA  LEU    32     122.625   5.330   4.713  1.00 25.00           C
ATOM     33  CA  LYS    33     121.584   5.222   8.397  1.00 25.00           C
ATOM     34  CA  THR    34     121.250   9.037   8.440  1.00 25.00           C
ATOM     35  CA  GLU    35     118.272   9.650   6.251  1.00 25.00           C
ATOM     36  CA  PHE    36     115.966   6.705   6.834  1.00 25.00           C
ATOM     37  CA  SER    37     116.713   4.360   3.898  1.00 25.00           C
ATOM     38  CA  GLU    38     119.469   1.784   4.515  1.00 25.00           C
ATOM     39  CA  GLU    39     116.966  -0.745   3.098  1.00 25.00           C
ATOM     40  CA  ASN    40     119.459  -1.714   0.357  1.00 25.00           C
ATOM     41  CA  ILE    41     122.206  -2.179   2.986  1.00 25.00           C
ATOM     42  CA  GLU    42     119.868  -4.381   5.073  1.00 25.00           C
ATOM     43  CA  PHE    43     119.043  -6.482   1.980  1.00 25.00           C
ATOM     44  CA  TRP    44     122.777  -6.883   1.226  1.00 25.00           C
ATOM     45  CA  ILE    45     123.415  -7.973   4.842  1.00 25.00           C
ATOM     46  CA  ALA    46     120.569 -10.525   4.599  1.00 25.00           C
ATOM     47  CA  CYS    47     122.029 -11.880   1.328  1.00 25.00           C
ATOM     48  CA  GLU    48     125.477 -12.189   2.966  1.00 25.00           C
ATOM     49  CA  ASP    49     123.929 -14.059   5.928  1.00 25.00           C
ATOM     50  CA  PHE    50     122.128 -16.431   3.522  1.00 25.00           C
ATOM     51  CA  LYS    51     125.410 -17.069   1.655  1.00 25.00           C
ATOM     52  CA  LYS    52     128.578 -19.277   1.731  1.00 25.00           C
ATOM     53  CA  SER    53     126.746 -21.256   4.426  1.00 25.00           C
ATOM     54  CA  LYS    54     126.114 -24.734   5.836  1.00 25.00           C
ATOM     55  CA  GLY    55     126.073 -26.828   2.686  1.00 25.00           C
ATOM     56  CA  PRO    56     122.395 -27.615   3.341  1.00 25.00           C
ATOM     57  CA  GLN    57     119.527 -27.649   5.879  1.00 25.00           C
ATOM     58  CA  GLN    58     121.133 -24.729   7.768  1.00 25.00           C
ATOM     59  CA  ILE    59     121.494 -22.777   4.494  1.00 25.00           C
ATOM     60  CA  HIS    60     117.815 -23.442   3.663  1.00 25.00           C
ATOM     61  CA  LEU    61     116.784 -22.232   7.146  1.00 25.00           C
ATOM     62  CA  LYS    62     118.873 -19.055   6.688  1.00 25.00           C
ATOM     63  CA  ALA    63     117.232 -18.436   3.284  1.00 25.00           C
ATOM     64  CA  LYS    64     113.765 -18.896   4.844  1.00 25.00           C
ATOM     65  CA  ALA    65     114.663 -16.422   7.627  1.00 25.00           C
ATOM     66  CA  ILE    66     115.870 -13.890   5.020  1.00 25.00           C
ATOM     67  CA  TYR    67     112.604 -14.311   3.063  1.00 25.00           C
ATOM     68  CA  GLU    68     110.583 -13.765   6.270  1.00 25.00           C
ATOM     69  CA  LYS    69     112.603 -10.602   7.033  1.00 25.00           C
ATOM     70  CA  PHE    70     111.975  -9.315   3.481  1.00 25.00           C
ATOM     71  CA  ILE    71     108.226  -9.993   3.872  1.00 25.00           C
ATOM     72  CA  GLN    72     105.703 -11.248   6.405  1.00 25.00           C
ATOM     73  CA  THR    73     105.145  -7.950   8.251  1.00 25.00           C
ATOM     74  CA  ASP    74     106.794  -4.603   9.208  1.00 25.00           C
ATOM     75  CA  ALA    75     107.249  -1.887   6.533  1.00 25.00           C
ATOM     76  CA  PRO    76     103.667  -2.737   5.538  1.00 25.00           C
ATOM     77  CA  LYS    77     103.180  -0.764   2.276  1.00 25.00           C
ATOM     78  CA  GLU    78     103.086   1.343  -0.889  1.00 25.00           C
ATOM     79  CA  VAL    79     106.168  -0.488  -2.183  1.00 25.00           C
ATOM     80  CA  ASN    80     103.958  -2.241  -4.692  1.00 25.00           C
ATOM     81  CA  LEU    81     105.956  -3.178  -7.740  1.00 25.00           C
ATOM     82  CA  ASP    82     103.636  -5.691  -9.375  1.00 25.00           C
ATOM     83  CA  PHE    83     104.787  -8.145  -6.753  1.00 25.00           C
ATOM     84  CA  HIS    84     105.701 -10.857  -9.300  1.00 25.00           C
ATOM     85  CA  THR    85     109.414 -10.422  -8.465  1.00 25.00           C
ATOM     86  CA  LYS    86     108.634 -10.721  -4.727  1.00 25.00           C
ATOM     87  CA  GLU    87     106.616 -13.911  -5.378  1.00 25.00           C
ATOM     88  CA  VAL    88     109.520 -15.364  -7.408  1.00 25.00           C
ATOM     89  CA  ILE    89     111.953 -14.530  -4.571  1.00 25.00           C
ATOM     90  CA  THR    90     109.628 -16.225  -2.045  1.00 25.00           C
ATOM     91  CA  ASN    91     109.427 -19.330  -4.278  1.00 25.00           C
ATOM     92  CA  SER    92     113.246 -19.415  -4.547  1.00 25.00           C
ATOM     93  CA  ILE    93     113.545 -19.140  -0.740  1.00 25.00           C
ATOM     94  CA  THR    94     111.184 -22.144  -0.320  1.00 25.00           C
ATOM     95  CA  GLN    95     112.983 -25.108  -1.968  1.00 25.00           C
ATOM     96  CA  PRO    96     116.658 -24.282  -2.494  1.00 25.00           C
ATOM     97  CA  THR    97     119.895 -22.559  -3.606  1.00 25.00           C
ATOM     98  CA  LEU    98     122.136 -19.517  -4.104  1.00 25.00           C
ATOM     99  CA  HIS    99     119.987 -18.699  -7.099  1.00 25.00           C
ATOM    100  CA  SER   100     116.881 -16.529  -6.544  1.00 25.00           C
ATOM    101  CA  PHE   101     118.384 -15.162  -3.299  1.00 25.00           C
ATOM    102  CA  ASP   102     121.654 -14.356  -5.124  1.00 25.00           C
ATOM    103  CA  ALA   103     119.699 -12.552  -7.880  1.00 25.00           C
ATOM    104  CA  ALA   104     117.793 -10.534  -5.241  1.00 25.00           C
ATOM    105  CA  GLN   105     121.095  -9.588  -3.545  1.00 25.00           C
ATOM    106  CA  SER   106     122.538  -8.484  -6.916  1.00 25.00           C
ATOM    107  CA  ARG   107     119.420  -6.362  -7.585  1.00 25.00           C
ATOM    108  CA  VAL   108     119.744  -4.752  -4.125  1.00 25.00           C
ATOM    109  CA  TYR   109     123.433  -3.982  -4.801  1.00 25.00           C
ATOM    110  CA  GLN   110     122.513  -2.409  -8.170  1.00 25.00           C
ATOM    111  CA  LEU   111     119.828  -0.274  -6.466  1.00 25.00           C
ATOM    112  CA  MET   112     122.366   0.862  -3.833  1.00 25.00           C
ATOM    113  CA  GLU   113     124.855   1.784  -6.594  1.00 25.00           C
ATOM    114  CA  GLN   114     122.137   3.778  -8.412  1.00 25.00           C
ATOM    115  CA  ASP   115     121.346   7.281  -7.013  1.00 25.00           C
ATOM    116  CA  SER   116     122.467   6.475  -3.476  1.00 25.00           C
ATOM    117  CA  TYR   117     125.995   7.897  -3.309  1.00 25.00           C
ATOM    118  CA  THR   118     124.694  11.224  -4.692  1.00 25.00           C
ATOM    119  CA  ARG   119     124.139  12.516  -1.130  1.00 25.00           C
ATOM    120  CA  PHE   120     127.698  11.474  -0.170  1.00 25.00           C
ATOM    121  CA  LEU   121     129.082  13.277  -3.253  1.00 25.00           C
ATOM    122  CA  LYS   122     126.513  15.931  -4.357  1.00 25.00           C
ATOM    123  CA  SER   123     126.683  16.961  -0.691  1.00 25.00           C
ATOM    124  CA  ASP   124     129.148  17.079   2.182  1.00 25.00           C
ATOM    125  CA  ILE   125     131.497  14.796   4.166  1.00 25.00           C
ATOM    126  CA  TYR   126     132.749  13.213   0.911  1.00 25.00           C
ATOM    127  CA  LEU   127     133.369  16.691  -0.570  1.00 25.00           C
ATOM    128  CA  ASP   128     135.306  17.710   2.574  1.00 25.00           C
ATOM    129  CA  LEU   129     137.417  14.524   2.336  1.00 25.00           C
ATOM    130  CA  MET   130     138.152  15.254  -1.351  1.00 25.00           C
ATOM    131  CA  GLU   131     139.480  18.784  -1.726  1.00 25.00           C
ATOM    132  CA  GLY   132     140.477  19.349   1.912  1.00 25.00           C
TER
END
