
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0302TS393_2
# Molecule2: number of CA atoms  132 ( 2145),  selected  132 , name T0302.pdb
# PARAMETERS: T0302TS393_2.T0302.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   132         1 - 132         3.73     3.73
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        24 - 70          2.00     3.93
  LCS_AVERAGE:     28.87

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24       101 - 124         0.92     4.71
  LCS_AVERAGE:     10.50

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     S       1     S       1      3   15  132     3    3   10   12   12   15   15   16   20   30   32   38   45   49   68   83  110  115  127  130 
LCS_GDT     M       2     M       2      3   15  132     3    3    9   15   25   37   63   86  101  113  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     V       3     V       3      3   15  132     3    5    9   26   42   67   92   99  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S       4     S       4      3   15  132     3   10   21   38   50   63   91   98  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     P       5     P       5     11   15  132     7   10   23   47   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E       6     E       6     11   15  132     7   10   23   48   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E       7     E       7     11   15  132     7   10   10   26   44   61   93  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     A       8     A       8     11   15  132     7   10   10   36   61   82   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     V       9     V       9     11   15  132     7   16   33   50   68   84   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      10     K      10     11   15  132     7   16   33   50   68   84   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     W      11     W      11     11   15  132     7   10   12   19   25   51   80   91  101  109  115  121  122  125  128  130  131  131  131  131 
LCS_GDT     G      12     G      12     11   15  132     4   10   10   24   35   43   56   85   94  106  112  120  122  125  128  130  131  131  131  131 
LCS_GDT     E      13     E      13     11   15  132     4   10   10   18   27   45   80   90  101  109  115  121  122  125  128  130  131  131  131  131 
LCS_GDT     S      14     S      14     11   15  132     6   10   18   27   35   51   80   91  101  109  115  121  122  125  128  130  131  131  131  131 
LCS_GDT     F      15     F      15     11   15  132     6    7   16   21   29   36   46   63   70  104  112  118  122  125  127  130  131  131  131  131 
LCS_GDT     D      16     D      16      6    7  132     6   11   16   19   49   64   84  100  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      17     K      17      6    7  132     6    9   36   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L      18     L      18      6    7  132     6    7    7    7   10   23   57   80   91  106  113  121  122  125  128  130  131  131  131  131 
LCS_GDT     L      19     L      19      6   38  132     6    7   16   47   65   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S      20     S      20      3   38  132     3   19   30   41   61   84   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     H      21     H      21      3   38  132     3    7   22   41   62   82   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     R      22     R      22     14   38  132    11   14   15   49   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     D      23     D      23     14   38  132    11   18   28   49   68   84   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     G      24     G      24     14   47  132    11   14   17   39   61   82   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L      25     L      25     14   47  132    11   14   25   49   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      26     E      26     14   47  132    11   20   38   55   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     A      27     A      27     14   47  132    11   18   33   49   66   84   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F      28     F      28     14   47  132    11   18   34   50   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T      29     T      29     14   47  132    11   26   42   56   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     R      30     R      30     14   47  132    11   19   34   52   68   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F      31     F      31     14   47  132    11   20   34   50   68   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L      32     L      32     14   47  132    11   26   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      33     K      33     14   47  132    10   26   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T      34     T      34     14   47  132    10   26   42   55   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      35     E      35     14   47  132    10   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F      36     F      36     10   47  132     3   16   30   42   57   78   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S      37     S      37     15   47  132    11   18   25   56   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      38     E      38     15   47  132     6   15   35   57   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      39     E      39     15   47  132     3   17   30   43   63   83   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     N      40     N      40     15   47  132     5   18   37   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I      41     I      41     15   47  132     7   26   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      42     E      42     15   47  132     4   13   31   52   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F      43     F      43     15   47  132     8   20   40   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     W      44     W      44     15   47  132    10   18   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I      45     I      45     15   47  132     8   18   38   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     A      46     A      46     15   47  132     8   15   36   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     C      47     C      47     15   47  132     8   20   41   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      48     E      48     15   47  132     8   22   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     D      49     D      49     15   47  132     8   14   36   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F      50     F      50     15   47  132     8   20   36   57   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      51     K      51     15   47  132     7   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      52     K      52     13   47  132    12   20   37   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S      53     S      53     13   47  132     4   18   34   50   67   78   91   98  109  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      54     K      54     12   47  132     4   10   26   44   64   75   91   98  107  113  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     G      55     G      55     16   47  132     3    7   28   50   64   78   91   98  107  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     P      56     P      56     16   47  132    10   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Q      57     Q      57     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Q      58     Q      58     16   47  132     7   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I      59     I      59     16   47  132     6   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     H      60     H      60     16   47  132     6   21   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L      61     L      61     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      62     K      62     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     A      63     A      63     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      64     K      64     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     A      65     A      65     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I      66     I      66     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Y      67     Y      67     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      68     E      68     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      69     K      69     16   47  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F      70     F      70     16   47  132     9   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I      71     I      71      4   41  132     0    4    5   16   42   68   81   97  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Q      72     Q      72      3   41  132     0    4   25   46   64   75   86   97  107  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T      73     T      73      3   38  132     3    4   14   40   56   68   81   91  100  110  115  119  122  125  128  130  131  131  131  131 
LCS_GDT     D      74     D      74      4   38  132     3    8   13   37   52   71   83   94  107  113  116  119  122  125  128  130  131  131  131  131 
LCS_GDT     A      75     A      75      4   36  132     3    3    7   21   32   55   86  100  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     P      76     P      76      4   17  132     3    3   10   15   34   53   75   91  107  111  115  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      77     K      77      4   17  132     3    3    4   15   16   17   19   28   57   76  105  116  120  124  127  130  131  131  131  131 
LCS_GDT     E      78     E      78      5   17  132     0    4    7    8   11   14   17   17   21   29   72   87  109  124  126  129  131  131  131  131 
LCS_GDT     V      79     V      79      6   17  132     3    4    7   12   16   16   20   32   56   67  102  116  120  124  128  130  131  131  131  131 
LCS_GDT     N      80     N      80      6   17  132     3    4   10   15   16   21   43   55   65   87  105  116  121  124  128  130  131  131  131  131 
LCS_GDT     L      81     L      81      6   18  132     3    4   10   15   16   28   47   59   72   90  106  117  121  124  128  130  131  131  131  131 
LCS_GDT     D      82     D      82     11   26  132     3    4   10   15   34   47   64   78   93  104  116  119  122  125  128  130  131  131  131  131 
LCS_GDT     F      83     F      83     13   42  132    10   17   35   51   69   80   92  100  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     H      84     H      84     13   42  132    10   20   36   57   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T      85     T      85     13   42  132    10   20   36   57   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K      86     K      86     13   42  132    10   20   35   55   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E      87     E      87     13   42  132    10   20   36   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     V      88     V      88     13   42  132    10   26   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I      89     I      89     13   42  132    10   20   41   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T      90     T      90     13   42  132    10   20   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     N      91     N      91     13   42  132    10   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S      92     S      92     13   42  132    10   16   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I      93     I      93     13   42  132     4   20   36   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T      94     T      94     13   42  132     6   20   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Q      95     Q      95     13   42  132     4    7   28   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     P      96     P      96      9   42  132     4   20   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T      97     T      97      7   42  132     4   18   35   56   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L      98     L      98      7   42  132     3   15   32   50   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     H      99     H      99      7   42  132     4    6   18   34   50   69   89   98  107  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S     100     S     100     15   42  132     4    9   19   50   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F     101     F     101     24   42  132     4   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     D     102     D     102     24   42  132     7   26   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     A     103     A     103     24   42  132    11   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     A     104     A     104     24   42  132    11   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Q     105     Q     105     24   42  132    11   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S     106     S     106     24   42  132    11   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     R     107     R     107     24   42  132    11   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     V     108     V     108     24   42  132    11   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Y     109     Y     109     24   42  132    11   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Q     110     Q     110     24   42  132    11   20   40   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L     111     L     111     24   42  132    11   20   37   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     M     112     M     112     24   42  132    11   20   37   56   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E     113     E     113     24   42  132    11   20   37   56   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Q     114     Q     114     24   42  132    11   20   37   56   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     D     115     D     115     24   42  132     3    3   24   41   53   78   94  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S     116     S     116     24   42  132     4   19   34   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Y     117     Y     117     24   42  132    12   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     T     118     T     118     24   42  132     6   20   37   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     R     119     R     119     24   42  132     5   19   40   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     F     120     F     120     24   42  132     5   21   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L     121     L     121     24   42  132    10   27   42   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     K     122     K     122     24   42  132     7   19   37   58   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     S     123     S     123     24   42  132     4   16   30   52   69   81   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     D     124     D     124     24   42  132     5   20   35   57   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     I     125     I     125     13   42  132     6   10   20   39   57   82   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     Y     126     Y     126     13   42  132     6   10   22   42   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L     127     L     127     13   42  132     6   16   30   57   69   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     D     128     D     128     13   41  132     6    9   19   38   50   63   87   97  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     L     129     L     129     13   33  132     6    7   17   27   46   62   80   97  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     M     130     M     130     13   33  132     6   10   23   41   58   86   95  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     E     131     E     131     11   33  132     3   10   17   33   50   63   89   97  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_GDT     G     132     G     132      3   33  132     3    4   12   37   59   80   94  101  110  114  116  121  122  125  128  130  131  131  131  131 
LCS_AVERAGE  LCS_A:  46.46  (  10.50   28.87  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     27     42     58     69     86     95    101    110    114    116    121    122    125    128    130    131    131    131    131 
GDT PERCENT_CA   9.09  20.45  31.82  43.94  52.27  65.15  71.97  76.52  83.33  86.36  87.88  91.67  92.42  94.70  96.97  98.48  99.24  99.24  99.24  99.24
GDT RMS_LOCAL    0.34   0.73   1.00   1.37   1.55   1.94   2.17   2.32   2.57   2.69   2.77   3.02   3.06   3.23   3.40   3.53   3.61   3.61   3.61   3.61
GDT RMS_ALL_CA   4.42   3.97   3.90   4.00   4.00   3.84   3.76   3.76   3.75   3.75   3.77   3.74   3.75   3.74   3.74   3.73   3.73   3.73   3.73   3.73

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      S       1         11.611
LGA    M       2      M       2          5.627
LGA    V       3      V       3          4.420
LGA    S       4      S       4          4.478
LGA    P       5      P       5          2.562
LGA    E       6      E       6          2.744
LGA    E       7      E       7          3.943
LGA    A       8      A       8          3.568
LGA    V       9      V       9          2.471
LGA    K      10      K      10          2.460
LGA    W      11      W      11          6.176
LGA    G      12      G      12          7.385
LGA    E      13      E      13          6.034
LGA    S      14      S      14          6.695
LGA    F      15      F      15          7.813
LGA    D      16      D      16          4.264
LGA    K      17      K      17          2.219
LGA    L      18      L      18          6.242
LGA    L      19      L      19          2.921
LGA    S      20      S      20          3.110
LGA    H      21      H      21          3.359
LGA    R      22      R      22          2.507
LGA    D      23      D      23          2.530
LGA    G      24      G      24          3.351
LGA    L      25      L      25          2.513
LGA    E      26      E      26          1.713
LGA    A      27      A      27          2.868
LGA    F      28      F      28          2.268
LGA    T      29      T      29          1.573
LGA    R      30      R      30          2.605
LGA    F      31      F      31          2.840
LGA    L      32      L      32          1.595
LGA    K      33      K      33          1.608
LGA    T      34      T      34          2.080
LGA    E      35      E      35          1.656
LGA    F      36      F      36          3.942
LGA    S      37      S      37          2.689
LGA    E      38      E      38          1.681
LGA    E      39      E      39          2.979
LGA    N      40      N      40          1.533
LGA    I      41      I      41          0.903
LGA    E      42      E      42          2.105
LGA    F      43      F      43          1.256
LGA    W      44      W      44          1.180
LGA    I      45      I      45          0.896
LGA    A      46      A      46          1.630
LGA    C      47      C      47          1.615
LGA    E      48      E      48          0.674
LGA    D      49      D      49          1.372
LGA    F      50      F      50          2.335
LGA    K      51      K      51          1.627
LGA    K      52      K      52          3.395
LGA    S      53      S      53          4.830
LGA    K      54      K      54          5.932
LGA    G      55      G      55          5.371
LGA    P      56      P      56          1.721
LGA    Q      57      Q      57          1.638
LGA    Q      58      Q      58          2.095
LGA    I      59      I      59          2.212
LGA    H      60      H      60          2.399
LGA    L      61      L      61          1.991
LGA    K      62      K      62          1.879
LGA    A      63      A      63          1.353
LGA    K      64      K      64          1.752
LGA    A      65      A      65          1.901
LGA    I      66      I      66          1.721
LGA    Y      67      Y      67          1.313
LGA    E      68      E      68          2.630
LGA    K      69      K      69          2.600
LGA    F      70      F      70          1.236
LGA    I      71      I      71          5.206
LGA    Q      72      Q      72          5.473
LGA    T      73      T      73          7.839
LGA    D      74      D      74          7.150
LGA    A      75      A      75          4.895
LGA    P      76      P      76          5.535
LGA    K      77      K      77          7.990
LGA    E      78      E      78          9.151
LGA    V      79      V      79          7.662
LGA    N      80      N      80          7.603
LGA    L      81      L      81          7.741
LGA    D      82      D      82          7.290
LGA    F      83      F      83          4.560
LGA    H      84      H      84          3.962
LGA    T      85      T      85          3.775
LGA    K      86      K      86          3.799
LGA    E      87      E      87          3.418
LGA    V      88      V      88          2.368
LGA    I      89      I      89          2.435
LGA    T      90      T      90          2.530
LGA    N      91      N      91          1.870
LGA    S      92      S      92          2.042
LGA    I      93      I      93          2.575
LGA    T      94      T      94          1.969
LGA    Q      95      Q      95          2.806
LGA    P      96      P      96          1.625
LGA    T      97      T      97          2.630
LGA    L      98      L      98          3.438
LGA    H      99      H      99          4.837
LGA    S     100      S     100          3.086
LGA    F     101      F     101          1.079
LGA    D     102      D     102          0.944
LGA    A     103      A     103          1.304
LGA    A     104      A     104          1.195
LGA    Q     105      Q     105          0.828
LGA    S     106      S     106          1.131
LGA    R     107      R     107          0.592
LGA    V     108      V     108          0.569
LGA    Y     109      Y     109          0.966
LGA    Q     110      Q     110          1.663
LGA    L     111      L     111          1.605
LGA    M     112      M     112          2.181
LGA    E     113      E     113          2.546
LGA    Q     114      Q     114          2.265
LGA    D     115      D     115          3.840
LGA    S     116      S     116          2.412
LGA    Y     117      Y     117          0.772
LGA    T     118      T     118          1.587
LGA    R     119      R     119          1.822
LGA    F     120      F     120          1.177
LGA    L     121      L     121          0.570
LGA    K     122      K     122          2.912
LGA    S     123      S     123          3.679
LGA    D     124      D     124          2.930
LGA    I     125      I     125          3.367
LGA    Y     126      Y     126          2.541
LGA    L     127      L     127          2.911
LGA    D     128      D     128          4.894
LGA    L     129      L     129          4.713
LGA    M     130      M     130          3.089
LGA    E     131      E     131          4.758
LGA    G     132      G     132          3.938

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0    101    2.32    59.848    56.149     4.170

LGA_LOCAL      RMSD =  2.322  Number of atoms =  101  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.760  Number of atoms =  132 
Std_ALL_ATOMS  RMSD =  3.732  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.689715 * X  +   0.427267 * Y  +  -0.584582 * Z  + 123.094955
  Y_new =   0.272484 * X  +  -0.594840 * Y  +  -0.756252 * Z  +  -3.948153
  Z_new =  -0.670855 * X  +  -0.680888 * Y  +   0.293847 * Z  +   0.494112 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.163379    1.978214  [ DEG:   -66.6567    113.3433 ]
  Theta =   0.735361    2.406232  [ DEG:    42.1331    137.8669 ]
  Phi   =   2.765346   -0.376247  [ DEG:   158.4426    -21.5574 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0302TS393_2                                  
REMARK     2: T0302.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0302TS393_2.T0302.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0  101   2.32  56.149     3.73
REMARK  ---------------------------------------------------------- 
MOLECULE T0302TS393_2
PFRMAT TS
TARGET T0302
MODEL 2
PARENT N/A
ATOM      1  CA  SER     1     149.090   8.905   8.126  1.00 25.00           C
ATOM      2  CA  MET     2     145.414   9.160   7.365  1.00 25.00           C
ATOM      3  CA  VAL     3     143.585   9.443   4.044  1.00 25.00           C
ATOM      4  CA  SER     4     143.429  12.396   1.635  1.00 25.00           C
ATOM      5  CA  PRO     5     142.792  13.239  -2.002  1.00 25.00           C
ATOM      6  CA  GLU     6     142.530  11.705  -5.502  1.00 25.00           C
ATOM      7  CA  GLU     7     144.034   8.430  -4.205  1.00 25.00           C
ATOM      8  CA  ALA     8     141.528   8.396  -1.310  1.00 25.00           C
ATOM      9  CA  VAL     9     138.646   8.975  -3.766  1.00 25.00           C
ATOM     10  CA  LYS    10     139.907   6.102  -5.962  1.00 25.00           C
ATOM     11  CA  TRP    11     140.104   3.814  -2.898  1.00 25.00           C
ATOM     12  CA  GLY    12     136.528   4.775  -1.919  1.00 25.00           C
ATOM     13  CA  GLU    13     135.327   4.023  -5.476  1.00 25.00           C
ATOM     14  CA  SER    14     137.073   0.616  -5.373  1.00 25.00           C
ATOM     15  CA  PHE    15     135.422  -0.155  -2.005  1.00 25.00           C
ATOM     16  CA  ASP    16     132.002   0.813  -3.432  1.00 25.00           C
ATOM     17  CA  LYS    17     132.594  -1.458  -6.458  1.00 25.00           C
ATOM     18  CA  LEU    18     133.561  -4.344  -4.133  1.00 25.00           C
ATOM     19  CA  LEU    19     130.386  -3.777  -2.068  1.00 25.00           C
ATOM     20  CA  SER    20     132.721  -3.249   0.886  1.00 25.00           C
ATOM     21  CA  HIS    21     136.246  -3.560   2.182  1.00 25.00           C
ATOM     22  CA  ARG    22     137.806  -0.414   3.600  1.00 25.00           C
ATOM     23  CA  ASP    23     137.754   2.663   5.879  1.00 25.00           C
ATOM     24  CA  GLY    24     135.659   4.568   3.300  1.00 25.00           C
ATOM     25  CA  LEU    25     133.213   1.630   3.079  1.00 25.00           C
ATOM     26  CA  GLU    26     132.932   1.546   6.897  1.00 25.00           C
ATOM     27  CA  ALA    27     132.250   5.314   6.955  1.00 25.00           C
ATOM     28  CA  PHE    28     129.543   4.890   4.279  1.00 25.00           C
ATOM     29  CA  THR    29     127.940   2.069   6.314  1.00 25.00           C
ATOM     30  CA  ARG    30     127.978   4.274   9.445  1.00 25.00           C
ATOM     31  CA  PHE    31     126.343   7.129   7.486  1.00 25.00           C
ATOM     32  CA  LEU    32     123.646   4.734   6.198  1.00 25.00           C
ATOM     33  CA  LYS    33     122.992   3.511   9.768  1.00 25.00           C
ATOM     34  CA  THR    34     122.690   7.131  10.978  1.00 25.00           C
ATOM     35  CA  GLU    35     119.623   7.442   8.799  1.00 25.00           C
ATOM     36  CA  PHE    36     117.440   7.122   5.657  1.00 25.00           C
ATOM     37  CA  SER    37     119.085   4.311   3.587  1.00 25.00           C
ATOM     38  CA  GLU    38     119.994   0.954   5.222  1.00 25.00           C
ATOM     39  CA  GLU    39     117.423  -1.616   4.015  1.00 25.00           C
ATOM     40  CA  ASN    40     119.520  -2.277   0.879  1.00 25.00           C
ATOM     41  CA  ILE    41     122.647  -2.753   3.040  1.00 25.00           C
ATOM     42  CA  GLU    42     120.749  -5.203   5.289  1.00 25.00           C
ATOM     43  CA  PHE    43     119.566  -7.151   2.212  1.00 25.00           C
ATOM     44  CA  TRP    44     123.159  -7.300   0.895  1.00 25.00           C
ATOM     45  CA  ILE    45     124.378  -8.575   4.294  1.00 25.00           C
ATOM     46  CA  ALA    46     121.647 -11.259   4.295  1.00 25.00           C
ATOM     47  CA  CYS    47     122.661 -12.327   0.760  1.00 25.00           C
ATOM     48  CA  GLU    48     126.326 -12.547   1.851  1.00 25.00           C
ATOM     49  CA  ASP    49     125.323 -14.678   4.871  1.00 25.00           C
ATOM     50  CA  PHE    50     123.292 -16.993   2.596  1.00 25.00           C
ATOM     51  CA  LYS    51     126.284 -17.334   0.230  1.00 25.00           C
ATOM     52  CA  LYS    52     129.399 -19.353   1.188  1.00 25.00           C
ATOM     53  CA  SER    53     127.406 -22.568   1.141  1.00 25.00           C
ATOM     54  CA  LYS    54     126.720 -25.119  -1.604  1.00 25.00           C
ATOM     55  CA  GLY    55     125.484 -27.565   1.068  1.00 25.00           C
ATOM     56  CA  PRO    56     122.154 -27.730   2.888  1.00 25.00           C
ATOM     57  CA  GLN    57     119.621 -27.624   5.759  1.00 25.00           C
ATOM     58  CA  GLN    58     121.697 -24.933   7.524  1.00 25.00           C
ATOM     59  CA  ILE    59     121.838 -22.885   4.291  1.00 25.00           C
ATOM     60  CA  HIS    60     118.040 -23.198   3.899  1.00 25.00           C
ATOM     61  CA  LEU    61     117.547 -22.049   7.518  1.00 25.00           C
ATOM     62  CA  LYS    62     119.844 -19.046   6.903  1.00 25.00           C
ATOM     63  CA  ALA    63     117.868 -18.150   3.748  1.00 25.00           C
ATOM     64  CA  LYS    64     114.586 -18.375   5.708  1.00 25.00           C
ATOM     65  CA  ALA    65     116.029 -16.105   8.434  1.00 25.00           C
ATOM     66  CA  ILE    66     117.138 -13.579   5.777  1.00 25.00           C
ATOM     67  CA  TYR    67     113.637 -13.638   4.225  1.00 25.00           C
ATOM     68  CA  GLU    68     112.073 -13.055   7.671  1.00 25.00           C
ATOM     69  CA  LYS    69     114.446 -10.110   8.276  1.00 25.00           C
ATOM     70  CA  PHE    70     113.515  -8.628   4.870  1.00 25.00           C
ATOM     71  CA  ILE    71     109.794  -8.999   5.698  1.00 25.00           C
ATOM     72  CA  GLN    72     107.317 -11.406   7.378  1.00 25.00           C
ATOM     73  CA  THR    73     105.598  -8.630   9.356  1.00 25.00           C
ATOM     74  CA  ASP    74     107.808  -6.241  11.320  1.00 25.00           C
ATOM     75  CA  ALA    75     108.361  -3.055   9.407  1.00 25.00           C
ATOM     76  CA  PRO    76     104.646  -2.445   9.307  1.00 25.00           C
ATOM     77  CA  LYS    77     104.111  -1.850   5.586  1.00 25.00           C
ATOM     78  CA  GLU    78     102.753   0.468   2.892  1.00 25.00           C
ATOM     79  CA  VAL    79     106.106  -0.007   1.267  1.00 25.00           C
ATOM     80  CA  ASN    80     104.577   0.087  -2.261  1.00 25.00           C
ATOM     81  CA  LEU    81     105.345  -3.417  -3.604  1.00 25.00           C
ATOM     82  CA  ASP    82     104.757  -4.902  -7.103  1.00 25.00           C
ATOM     83  CA  PHE    83     104.898  -8.371  -5.619  1.00 25.00           C
ATOM     84  CA  HIS    84     106.713 -10.657  -8.097  1.00 25.00           C
ATOM     85  CA  THR    85     109.821 -10.656  -5.860  1.00 25.00           C
ATOM     86  CA  LYS    86     107.665 -11.541  -2.821  1.00 25.00           C
ATOM     87  CA  GLU    87     106.044 -14.408  -4.776  1.00 25.00           C
ATOM     88  CA  VAL    88     109.502 -15.698  -5.798  1.00 25.00           C
ATOM     89  CA  ILE    89     110.660 -15.556  -2.151  1.00 25.00           C
ATOM     90  CA  THR    90     107.540 -17.487  -1.058  1.00 25.00           C
ATOM     91  CA  ASN    91     108.204 -20.131  -3.748  1.00 25.00           C
ATOM     92  CA  SER    92     111.833 -20.454  -2.569  1.00 25.00           C
ATOM     93  CA  ILE    93     110.646 -20.870   1.049  1.00 25.00           C
ATOM     94  CA  THR    94     110.463 -24.717   0.807  1.00 25.00           C
ATOM     95  CA  GLN    95     113.655 -26.598  -0.189  1.00 25.00           C
ATOM     96  CA  PRO    96     115.717 -23.518  -0.739  1.00 25.00           C
ATOM     97  CA  THR    97     118.135 -23.263  -3.720  1.00 25.00           C
ATOM     98  CA  LEU    98     120.552 -20.401  -3.075  1.00 25.00           C
ATOM     99  CA  HIS    99     118.905 -17.949  -5.474  1.00 25.00           C
ATOM    100  CA  SER   100     116.062 -15.595  -4.456  1.00 25.00           C
ATOM    101  CA  PHE   101     118.327 -13.951  -1.841  1.00 25.00           C
ATOM    102  CA  ASP   102     121.073 -13.495  -4.471  1.00 25.00           C
ATOM    103  CA  ALA   103     118.544 -11.918  -6.875  1.00 25.00           C
ATOM    104  CA  ALA   104     117.365  -9.540  -4.115  1.00 25.00           C
ATOM    105  CA  GLN   105     120.993  -8.564  -3.372  1.00 25.00           C
ATOM    106  CA  SER   106     121.601  -7.900  -7.095  1.00 25.00           C
ATOM    107  CA  ARG   107     118.451  -5.727  -7.248  1.00 25.00           C
ATOM    108  CA  VAL   108     119.627  -3.764  -4.176  1.00 25.00           C
ATOM    109  CA  TYR   109     123.058  -3.239  -5.794  1.00 25.00           C
ATOM    110  CA  GLN   110     121.381  -2.003  -9.007  1.00 25.00           C
ATOM    111  CA  LEU   111     119.222   0.422  -6.977  1.00 25.00           C
ATOM    112  CA  MET   112     122.339   1.725  -5.173  1.00 25.00           C
ATOM    113  CA  GLU   113     124.105   2.227  -8.533  1.00 25.00           C
ATOM    114  CA  GLN   114     121.064   4.130  -9.875  1.00 25.00           C
ATOM    115  CA  ASP   115     120.499   7.431  -8.196  1.00 25.00           C
ATOM    116  CA  SER   116     121.195   6.588  -4.572  1.00 25.00           C
ATOM    117  CA  TYR   117     125.011   6.636  -4.901  1.00 25.00           C
ATOM    118  CA  THR   118     125.372   9.585  -7.318  1.00 25.00           C
ATOM    119  CA  ARG   119     123.608  11.884  -4.815  1.00 25.00           C
ATOM    120  CA  PHE   120     125.948  10.687  -2.029  1.00 25.00           C
ATOM    121  CA  LEU   121     128.987  11.354  -4.263  1.00 25.00           C
ATOM    122  CA  LYS   122     127.744  14.724  -5.567  1.00 25.00           C
ATOM    123  CA  SER   123     126.482  15.689  -2.046  1.00 25.00           C
ATOM    124  CA  ASP   124     128.613  16.432   1.025  1.00 25.00           C
ATOM    125  CA  ILE   125     131.488  15.218   3.245  1.00 25.00           C
ATOM    126  CA  TYR   126     133.248  13.722   0.190  1.00 25.00           C
ATOM    127  CA  LEU   127     132.827  17.026  -1.700  1.00 25.00           C
ATOM    128  CA  ASP   128     134.278  18.945   1.279  1.00 25.00           C
ATOM    129  CA  LEU   129     137.261  16.545   1.403  1.00 25.00           C
ATOM    130  CA  MET   130     137.838  17.031  -2.352  1.00 25.00           C
ATOM    131  CA  GLU   131     138.934  20.635  -1.806  1.00 25.00           C
ATOM    132  CA  GLY   132     141.378  19.680   0.885  1.00 25.00           C
TER
END
