
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  129 (  129),  selected  129 , name T0302TS168_1-D1
# Molecule2: number of CA atoms  129 ( 2108),  selected  129 , name T0302_D1.pdb
# PARAMETERS: T0302TS168_1-D1.T0302_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   129         3 - 131         3.34     3.34
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    56        16 - 71          1.97     3.46
  LONGEST_CONTINUOUS_SEGMENT:    56        17 - 72          1.99     3.46
  LCS_AVERAGE:     34.37

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22       101 - 122         0.99     3.72
  LCS_AVERAGE:     11.37

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  129
LCS_GDT     V       3     V       3      4   13  129     3    5   11   19   41   84   95  104  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S       4     S       4      4   13  129     3    5   11   19   61   91  100  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     P       5     P       5     11   13  129     7   10   12   42   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E       6     E       6     11   13  129     7   10   11   54   84   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E       7     E       7     11   13  129     7   10   11   13   16   65   90  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     A       8     A       8     11   13  129     7   10   11   23   74   88   97  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     V       9     V       9     11   13  129     7   22   47   68   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      10     K      10     11   13  129     7   16   48   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     W      11     W      11     11   13  129     7   10   11   19   23   57   72  102  107  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     G      12     G      12     11   13  129     4   11   17   25   36   48   67   85   98  112  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      13     E      13     11   13  129     4   10   11   27   47   72   91  102  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S      14     S      14     11   13  129     6   10   19   30   54   74   95  102  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F      15     F      15     11   13  129     6    7   10   19   29   43   62   82  101  112  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     D      16     D      16      6   56  129     6   12   22   36   59   79   97  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      17     K      17      6   56  129     6   23   42   62   80   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L      18     L      18      6   56  129     6    7    7    8   10   20   57   98  108  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L      19     L      19      6   56  129     6    9   36   62   79   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S      20     S      20      4   56  129     3    5   43   68   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     H      21     H      21     15   56  129    10   21   45   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     R      22     R      22     17   56  129     9   30   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     D      23     D      23     17   56  129    10   27   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     G      24     G      24     17   56  129    10   15   41   68   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L      25     L      25     17   56  129    10   15   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      26     E      26     17   56  129    10   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     A      27     A      27     17   56  129     9   21   48   66   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F      28     F      28     17   56  129    10   27   51   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T      29     T      29     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     R      30     R      30     17   56  129    10   26   49   68   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F      31     F      31     17   56  129    10   26   48   66   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L      32     L      32     17   56  129    10   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      33     K      33     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T      34     T      34     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      35     E      35     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F      36     F      36     17   56  129     5   19   44   63   84   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S      37     S      37     17   56  129     6   19   44   68   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      38     E      38     17   56  129     6   21   46   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      39     E      39     16   56  129     6   18   36   65   84   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     N      40     N      40     16   56  129     6   23   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I      41     I      41     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      42     E      42     16   56  129     6   21   43   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F      43     F      43     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     W      44     W      44     16   56  129     9   27   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I      45     I      45     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     A      46     A      46     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     C      47     C      47     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      48     E      48     16   56  129     9   27   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     D      49     D      49     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F      50     F      50     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      51     K      51     16   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      52     K      52      4   56  129    11   16   22   46   63   85   99  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S      53     S      53      4   56  129     3   17   39   61   81   94  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      54     K      54     17   56  129     6   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     G      55     G      55     17   56  129     9   24   48   65   82   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     P      56     P      56     17   56  129     7   27   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Q      57     Q      57     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Q      58     Q      58     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I      59     I      59     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     H      60     H      60     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L      61     L      61     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      62     K      62     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     A      63     A      63     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      64     K      64     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     A      65     A      65     17   56  129    11   26   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I      66     I      66     17   56  129    11   30   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Y      67     Y      67     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      68     E      68     17   56  129    11   25   52   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      69     K      69     17   56  129    11   25   48   67   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F      70     F      70     17   56  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I      71     I      71      4   56  129     0    4    9   29   61   84   96  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Q      72     Q      72      5   56  129     3    6   13   44   65   89   96  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T      73     T      73      5   42  129     3    4    6    7   21   25   47   59   82  104  111  115  119  123  124  127  127  129  129  129 
LCS_GDT     D      74     D      74      5   38  129     3    4   20   42   65   84   96  104  110  114  118  121  122  123  125  127  128  129  129  129 
LCS_GDT     A      75     A      75      5   17  129     3   11   36   56   81   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     P      76     P      76      5   17  129     3    5    9   22   48   68   84  102  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      77     K      77      3   17  129     3    4    9   12   14   17   19   24   42   48   83   98  116  124  125  127  128  129  129  129 
LCS_GDT     E      78     E      78      3   17  129     0    3    4   10   12   16   18   20   24   33   56   62  107  113  124  127  128  129  129  129 
LCS_GDT     V      79     V      79      3   17  129     1    5    9   12   15   19   26   39   54   70   84  106  118  124  125  127  128  129  129  129 
LCS_GDT     N      80     N      80      5   17  129     0    5   10   13   17   23   37   53   63   73   86  106  116  123  125  127  128  129  129  129 
LCS_GDT     L      81     L      81      5   17  129     4    4    6    9   13   17   19   30   50   65   78   96  112  124  125  127  128  129  129  129 
LCS_GDT     D      82     D      82      5   40  129     4    4    9   13   25   42   58   74   92  105  112  117  119  123  125  127  128  129  129  129 
LCS_GDT     F      83     F      83     13   43  129    10   23   39   55   74   92  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     H      84     H      84     14   44  129    10   23   39   58   78   94  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T      85     T      85     14   44  129    10   23   43   62   79   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K      86     K      86     14   44  129    10   23   43   62   79   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E      87     E      87     14   44  129    10   23   43   62   79   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     V      88     V      88     14   44  129    11   25   51   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I      89     I      89     14   44  129    12   25   52   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T      90     T      90     14   44  129    10   23   48   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     N      91     N      91     14   44  129    10   25   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S      92     S      92     14   44  129    10   13   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I      93     I      93     14   44  129     4   25   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T      94     T      94     14   44  129     6   23   41   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Q      95     Q      95     14   44  129     3   17   30   68   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     P      96     P      96     14   44  129     4   10   49   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T      97     T      97     14   44  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L      98     L      98      6   44  129     6   14   30   51   79   92  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     H      99     H      99      6   44  129     4    5    6   16   30   50   86  101  109  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S     100     S     100     15   44  129     4   13   31   59   80   95  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F     101     F     101     22   44  129     4   30   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     D     102     D     102     22   44  129     9   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     A     103     A     103     22   44  129    12   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     A     104     A     104     22   44  129    12   28   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Q     105     Q     105     22   44  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S     106     S     106     22   44  129    12   26   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     R     107     R     107     22   44  129    12   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     V     108     V     108     22   44  129    12   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Y     109     Y     109     22   44  129    12   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Q     110     Q     110     22   44  129    12   27   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L     111     L     111     22   44  129    12   27   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     M     112     M     112     22   44  129    12   25   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E     113     E     113     22   44  129    12   25   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Q     114     Q     114     22   44  129    12   25   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     D     115     D     115     22   44  129     3   22   49   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S     116     S     116     22   44  129     3   17   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Y     117     Y     117     22   44  129    11   31   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     T     118     T     118     22   44  129    10   25   53   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     R     119     R     119     22   44  129     3   25   51   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     F     120     F     120     22   44  129     3   16   48   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L     121     L     121     22   44  129    10   25   38   66   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     K     122     K     122     22   44  129     3    9   26   38   62   79   97  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     S     123     S     123     17   44  129     5    9   17   24   52   71   97  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     D     124     D     124     17   44  129     3   11   24   46   73   89   97  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     I     125     I     125     17   44  129     5   11   20   46   60   90  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     Y     126     Y     126     17   44  129     6   11   38   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L     127     L     127     17   44  129     6   11   48   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     D     128     D     128     17   42  129     6   11   21   51   81   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     L     129     L     129     17   33  129     6   11   38   66   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     M     130     M     130     17   33  129     6   25   52   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_GDT     E     131     E     131     17   33  129     6   14   52   70   85   96  101  105  110  114  118  121  122  124  125  127  128  129  129  129 
LCS_AVERAGE  LCS_A:  48.58  (  11.37   34.37  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     31     53     70     85     96    101    105    110    114    118    121    122    124    125    127    128    129    129    129 
GDT PERCENT_CA   9.30  24.03  41.09  54.26  65.89  74.42  78.29  81.40  85.27  88.37  91.47  93.80  94.57  96.12  96.90  98.45  99.22 100.00 100.00 100.00
GDT RMS_LOCAL    0.26   0.73   1.06   1.32   1.55   1.78   1.92   2.06   2.19   2.36   2.54   2.70   2.74   2.98   3.00   3.16   3.26   3.34   3.34   3.34
GDT RMS_ALL_CA   3.76   3.48   3.41   3.40   3.41   3.37   3.38   3.38   3.38   3.37   3.37   3.37   3.37   3.36   3.35   3.35   3.35   3.34   3.34   3.34

#      Molecule1      Molecule2       DISTANCE
LGA    V       3      V       3          4.588
LGA    S       4      S       4          3.860
LGA    P       5      P       5          3.175
LGA    E       6      E       6          2.265
LGA    E       7      E       7          4.501
LGA    A       8      A       8          4.937
LGA    V       9      V       9          3.875
LGA    K      10      K      10          3.837
LGA    W      11      W      11          7.115
LGA    G      12      G      12          8.000
LGA    E      13      E      13          6.368
LGA    S      14      S      14          7.011
LGA    F      15      F      15          7.730
LGA    D      16      D      16          4.314
LGA    K      17      K      17          1.956
LGA    L      18      L      18          6.027
LGA    L      19      L      19          2.551
LGA    S      20      S      20          2.469
LGA    H      21      H      21          2.847
LGA    R      22      R      22          1.411
LGA    D      23      D      23          2.490
LGA    G      24      G      24          2.823
LGA    L      25      L      25          1.655
LGA    E      26      E      26          1.540
LGA    A      27      A      27          2.632
LGA    F      28      F      28          1.696
LGA    T      29      T      29          0.794
LGA    R      30      R      30          1.877
LGA    F      31      F      31          1.810
LGA    L      32      L      32          0.806
LGA    K      33      K      33          1.060
LGA    T      34      T      34          0.740
LGA    E      35      E      35          0.358
LGA    F      36      F      36          4.091
LGA    S      37      S      37          3.405
LGA    E      38      E      38          2.346
LGA    E      39      E      39          3.000
LGA    N      40      N      40          1.531
LGA    I      41      I      41          1.026
LGA    E      42      E      42          2.034
LGA    F      43      F      43          0.750
LGA    W      44      W      44          1.124
LGA    I      45      I      45          1.208
LGA    A      46      A      46          0.748
LGA    C      47      C      47          0.509
LGA    E      48      E      48          1.246
LGA    D      49      D      49          0.794
LGA    F      50      F      50          0.452
LGA    K      51      K      51          0.478
LGA    K      52      K      52          3.711
LGA    S      53      S      53          2.119
LGA    K      54      K      54          2.191
LGA    G      55      G      55          1.096
LGA    P      56      P      56          1.579
LGA    Q      57      Q      57          1.142
LGA    Q      58      Q      58          0.933
LGA    I      59      I      59          0.972
LGA    H      60      H      60          0.622
LGA    L      61      L      61          0.284
LGA    K      62      K      62          0.670
LGA    A      63      A      63          0.529
LGA    K      64      K      64          0.381
LGA    A      65      A      65          0.757
LGA    I      66      I      66          1.155
LGA    Y      67      Y      67          0.307
LGA    E      68      E      68          1.475
LGA    K      69      K      69          2.117
LGA    F      70      F      70          1.210
LGA    I      71      I      71          3.962
LGA    Q      72      Q      72          3.921
LGA    T      73      T      73          7.720
LGA    D      74      D      74          4.683
LGA    A      75      A      75          3.568
LGA    P      76      P      76          7.065
LGA    K      77      K      77          9.783
LGA    E      78      E      78         10.142
LGA    V      79      V      79          8.140
LGA    N      80      N      80          8.407
LGA    L      81      L      81          7.965
LGA    D      82      D      82          6.683
LGA    F      83      F      83          3.065
LGA    H      84      H      84          2.854
LGA    T      85      T      85          2.169
LGA    K      86      K      86          2.136
LGA    E      87      E      87          2.491
LGA    V      88      V      88          1.419
LGA    I      89      I      89          1.209
LGA    T      90      T      90          1.924
LGA    N      91      N      91          2.066
LGA    S      92      S      92          2.101
LGA    I      93      I      93          1.796
LGA    T      94      T      94          2.273
LGA    Q      95      Q      95          2.861
LGA    P      96      P      96          2.358
LGA    T      97      T      97          1.059
LGA    L      98      L      98          2.462
LGA    H      99      H      99          4.530
LGA    S     100      S     100          2.419
LGA    F     101      F     101          1.518
LGA    D     102      D     102          1.402
LGA    A     103      A     103          1.537
LGA    A     104      A     104          1.260
LGA    Q     105      Q     105          1.074
LGA    S     106      S     106          1.918
LGA    R     107      R     107          1.700
LGA    V     108      V     108          1.284
LGA    Y     109      Y     109          1.421
LGA    Q     110      Q     110          2.389
LGA    L     111      L     111          2.251
LGA    M     112      M     112          2.252
LGA    E     113      E     113          2.671
LGA    Q     114      Q     114          2.867
LGA    D     115      D     115          3.541
LGA    S     116      S     116          1.758
LGA    Y     117      Y     117          1.011
LGA    T     118      T     118          2.780
LGA    R     119      R     119          3.376
LGA    F     120      F     120          2.932
LGA    L     121      L     121          3.967
LGA    K     122      K     122          6.349
LGA    S     123      S     123          6.179
LGA    D     124      D     124          5.143
LGA    I     125      I     125          3.922
LGA    Y     126      Y     126          1.915
LGA    L     127      L     127          2.892
LGA    D     128      D     128          2.808
LGA    L     129      L     129          2.207
LGA    M     130      M     130          2.396
LGA    E     131      E     131          1.963

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  129  129    4.0    105    2.06    64.535    61.813     4.867

LGA_LOCAL      RMSD =  2.057  Number of atoms =  105  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.519  Number of atoms =  129 
Std_ALL_ATOMS  RMSD =  3.345  (standard rmsd on all 129 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.301620 * X  +   0.581642 * Y  +  -0.755459 * Z  + 123.250237
  Y_new =   0.943391 * X  +   0.067396 * Y  +  -0.324763 * Z  +  -4.189435
  Z_new =  -0.137980 * X  +  -0.810648 * Y  +  -0.569044 * Z  +   0.438549 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.182838    0.958755  [ DEG:  -125.0674     54.9326 ]
  Theta =   0.138422    3.003171  [ DEG:     7.9310    172.0690 ]
  Phi   =   1.880244   -1.261349  [ DEG:   107.7300    -72.2700 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0302TS168_1-D1                               
REMARK     2: T0302_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0302TS168_1-D1.T0302_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  129  129   4.0  105   2.06  61.813     3.34
REMARK  ---------------------------------------------------------- 
MOLECULE T0302TS168_1-D1
PFRMAT TS
TARGET T0302
MODEL 1
PARENT N/A
ATOM      3  CA  VAL     3     143.875   8.685   5.172  1.00 25.00           C
ATOM      4  CA  SER     4     145.700  10.528   2.467  1.00 25.00           C
ATOM      5  CA  PRO     5     144.726  11.873  -0.935  1.00 25.00           C
ATOM      6  CA  GLU     6     144.521  10.575  -4.532  1.00 25.00           C
ATOM      7  CA  GLU     7     145.424   7.050  -3.338  1.00 25.00           C
ATOM      8  CA  ALA     8     142.719   7.245  -0.635  1.00 25.00           C
ATOM      9  CA  VAL     9     140.156   8.374  -3.249  1.00 25.00           C
ATOM     10  CA  LYS    10     141.154   5.459  -5.523  1.00 25.00           C
ATOM     11  CA  TRP    11     140.771   3.015  -2.600  1.00 25.00           C
ATOM     12  CA  GLY    12     137.309   4.451  -1.821  1.00 25.00           C
ATOM     13  CA  GLU    13     136.296   4.070  -5.494  1.00 25.00           C
ATOM     14  CA  SER    14     137.513   0.439  -5.478  1.00 25.00           C
ATOM     15  CA  PHE    15     135.505  -0.245  -2.290  1.00 25.00           C
ATOM     16  CA  ASP    16     132.387   1.296  -3.894  1.00 25.00           C
ATOM     17  CA  LYS    17     132.880  -0.883  -7.005  1.00 25.00           C
ATOM     18  CA  LEU    18     133.228  -3.995  -4.801  1.00 25.00           C
ATOM     19  CA  LEU    19     130.016  -3.064  -2.935  1.00 25.00           C
ATOM     20  CA  SER    20     132.324  -3.573   0.080  1.00 25.00           C
ATOM     21  CA  HIS    21     135.908  -3.624   1.406  1.00 25.00           C
ATOM     22  CA  ARG    22     136.442  -1.197   4.362  1.00 25.00           C
ATOM     23  CA  ASP    23     136.556   2.050   6.389  1.00 25.00           C
ATOM     24  CA  GLY    24     134.880   3.937   3.509  1.00 25.00           C
ATOM     25  CA  LEU    25     132.151   1.257   3.308  1.00 25.00           C
ATOM     26  CA  GLU    26     131.578   1.524   7.086  1.00 25.00           C
ATOM     27  CA  ALA    27     131.309   5.333   6.802  1.00 25.00           C
ATOM     28  CA  PHE    28     128.779   4.967   3.950  1.00 25.00           C
ATOM     29  CA  THR    29     126.730   2.507   6.052  1.00 25.00           C
ATOM     30  CA  ARG    30     126.776   4.951   9.000  1.00 25.00           C
ATOM     31  CA  PHE    31     125.613   7.784   6.701  1.00 25.00           C
ATOM     32  CA  LEU    32     122.774   5.580   5.378  1.00 25.00           C
ATOM     33  CA  LYS    33     121.726   4.733   8.964  1.00 25.00           C
ATOM     34  CA  THR    34     121.732   8.456   9.869  1.00 25.00           C
ATOM     35  CA  GLU    35     118.467   8.538   7.902  1.00 25.00           C
ATOM     36  CA  PHE    36     117.560   6.237   5.009  1.00 25.00           C
ATOM     37  CA  SER    37     117.585   3.581   2.316  1.00 25.00           C
ATOM     38  CA  GLU    38     120.000   1.660   4.565  1.00 25.00           C
ATOM     39  CA  GLU    39     117.357  -1.102   4.327  1.00 25.00           C
ATOM     40  CA  ASN    40     118.902  -2.333   1.047  1.00 25.00           C
ATOM     41  CA  ILE    41     122.370  -2.381   2.671  1.00 25.00           C
ATOM     42  CA  GLU    42     120.982  -4.371   5.635  1.00 25.00           C
ATOM     43  CA  PHE    43     119.357  -6.868   3.228  1.00 25.00           C
ATOM     44  CA  TRP    44     122.671  -7.250   1.348  1.00 25.00           C
ATOM     45  CA  ILE    45     124.506  -7.858   4.654  1.00 25.00           C
ATOM     46  CA  ALA    46     121.916 -10.503   5.634  1.00 25.00           C
ATOM     47  CA  CYS    47     122.343 -12.215   2.234  1.00 25.00           C
ATOM     48  CA  GLU    48     126.146 -12.212   2.682  1.00 25.00           C
ATOM     49  CA  ASP    49     125.760 -13.739   6.173  1.00 25.00           C
ATOM     50  CA  PHE    50     123.452 -16.448   4.760  1.00 25.00           C
ATOM     51  CA  LYS    51     126.001 -17.218   2.006  1.00 25.00           C
ATOM     52  CA  LYS    52     127.902 -20.435   1.378  1.00 25.00           C
ATOM     53  CA  SER    53     128.592 -21.397   5.011  1.00 25.00           C
ATOM     54  CA  LYS    54     126.639 -24.388   6.450  1.00 25.00           C
ATOM     55  CA  GLY    55     123.705 -26.479   5.123  1.00 25.00           C
ATOM     56  CA  PRO    56     120.195 -27.876   4.600  1.00 25.00           C
ATOM     57  CA  GLN    57     117.724 -27.009   7.396  1.00 25.00           C
ATOM     58  CA  GLN    58     120.030 -24.197   8.595  1.00 25.00           C
ATOM     59  CA  ILE    59     120.275 -22.840   5.022  1.00 25.00           C
ATOM     60  CA  HIS    60     116.459 -22.924   4.703  1.00 25.00           C
ATOM     61  CA  LEU    61     116.114 -21.052   8.025  1.00 25.00           C
ATOM     62  CA  LYS    62     118.625 -18.418   6.830  1.00 25.00           C
ATOM     63  CA  ALA    63     116.674 -18.005   3.560  1.00 25.00           C
ATOM     64  CA  LYS    64     113.416 -17.583   5.530  1.00 25.00           C
ATOM     65  CA  ALA    65     115.075 -14.943   7.754  1.00 25.00           C
ATOM     66  CA  ILE    66     116.331 -13.083   4.651  1.00 25.00           C
ATOM     67  CA  TYR    67     112.813 -13.169   3.144  1.00 25.00           C
ATOM     68  CA  GLU    68     111.353 -11.800   6.409  1.00 25.00           C
ATOM     69  CA  LYS    69     113.955  -8.989   6.421  1.00 25.00           C
ATOM     70  CA  PHE    70     113.085  -8.135   2.791  1.00 25.00           C
ATOM     71  CA  ILE    71     109.362  -8.043   3.678  1.00 25.00           C
ATOM     72  CA  GLN    72     106.785  -9.665   6.022  1.00 25.00           C
ATOM     73  CA  THR    73     104.086  -9.413   8.691  1.00 25.00           C
ATOM     74  CA  ASP    74     104.437  -5.711   9.530  1.00 25.00           C
ATOM     75  CA  ALA    75     105.500  -4.520   6.110  1.00 25.00           C
ATOM     76  CA  PRO    76     104.438  -1.059   7.134  1.00 25.00           C
ATOM     77  CA  LYS    77     103.435  -0.035   3.626  1.00 25.00           C
ATOM     78  CA  GLU    78     101.916  -0.297   0.184  1.00 25.00           C
ATOM     79  CA  VAL    79     105.240  -1.513  -1.317  1.00 25.00           C
ATOM     80  CA  ASN    80     104.066  -2.417  -4.857  1.00 25.00           C
ATOM     81  CA  LEU    81     106.385  -2.214  -7.865  1.00 25.00           C
ATOM     82  CA  ASP    82     105.522  -5.663  -9.296  1.00 25.00           C
ATOM     83  CA  PHE    83     106.134  -8.501  -6.828  1.00 25.00           C
ATOM     84  CA  HIS    84     107.632 -11.121  -9.184  1.00 25.00           C
ATOM     85  CA  THR    85     110.909 -11.065  -7.202  1.00 25.00           C
ATOM     86  CA  LYS    86     108.967 -11.522  -3.932  1.00 25.00           C
ATOM     87  CA  GLU    87     107.060 -14.478  -5.450  1.00 25.00           C
ATOM     88  CA  VAL    88     110.359 -16.052  -6.591  1.00 25.00           C
ATOM     89  CA  ILE    89     111.815 -15.608  -3.077  1.00 25.00           C
ATOM     90  CA  THR    90     108.705 -17.244  -1.555  1.00 25.00           C
ATOM     91  CA  ASN    91     109.024 -20.178  -3.996  1.00 25.00           C
ATOM     92  CA  SER    92     112.719 -20.580  -3.069  1.00 25.00           C
ATOM     93  CA  ILE    93     111.812 -20.565   0.652  1.00 25.00           C
ATOM     94  CA  THR    94     111.854 -24.334   0.876  1.00 25.00           C
ATOM     95  CA  GLN    95     114.569 -26.647  -0.584  1.00 25.00           C
ATOM     96  CA  PRO    96     117.342 -24.056  -0.707  1.00 25.00           C
ATOM     97  CA  THR    97     120.561 -22.613  -2.141  1.00 25.00           C
ATOM     98  CA  LEU    98     122.642 -19.430  -2.770  1.00 25.00           C
ATOM     99  CA  HIS    99     120.178 -18.742  -5.594  1.00 25.00           C
ATOM    100  CA  SER   100     117.098 -16.534  -5.044  1.00 25.00           C
ATOM    101  CA  PHE   101     118.842 -14.791  -2.114  1.00 25.00           C
ATOM    102  CA  ASP   102     121.941 -14.192  -4.281  1.00 25.00           C
ATOM    103  CA  ALA   103     119.746 -12.730  -7.059  1.00 25.00           C
ATOM    104  CA  ALA   104     118.033 -10.425  -4.525  1.00 25.00           C
ATOM    105  CA  GLN   105     121.448  -9.275  -3.227  1.00 25.00           C
ATOM    106  CA  SER   106     122.599  -8.567  -6.811  1.00 25.00           C
ATOM    107  CA  ARG   107     119.409  -6.550  -7.464  1.00 25.00           C
ATOM    108  CA  VAL   108     119.992  -4.545  -4.253  1.00 25.00           C
ATOM    109  CA  TYR   109     123.604  -3.845  -5.315  1.00 25.00           C
ATOM    110  CA  GLN   110     122.393  -2.680  -8.757  1.00 25.00           C
ATOM    111  CA  LEU   111     119.826  -0.372  -7.099  1.00 25.00           C
ATOM    112  CA  MET   112     122.553   1.074  -4.832  1.00 25.00           C
ATOM    113  CA  GLU   113     124.797   1.676  -7.877  1.00 25.00           C
ATOM    114  CA  GLN   114     121.915   3.433  -9.685  1.00 25.00           C
ATOM    115  CA  ASP   115     121.594   6.276  -7.205  1.00 25.00           C
ATOM    116  CA  SER   116     122.439   7.575  -3.746  1.00 25.00           C
ATOM    117  CA  TYR   117     125.892   6.089  -4.246  1.00 25.00           C
ATOM    118  CA  THR   118     126.274   8.272  -7.369  1.00 25.00           C
ATOM    119  CA  ARG   119     126.205  11.428  -5.203  1.00 25.00           C
ATOM    120  CA  PHE   120     128.878   9.937  -2.901  1.00 25.00           C
ATOM    121  CA  LEU   121     131.052   9.086  -5.938  1.00 25.00           C
ATOM    122  CA  LYS   122     131.632  12.679  -6.967  1.00 25.00           C
ATOM    123  CA  SER   123     130.024  15.033  -4.435  1.00 25.00           C
ATOM    124  CA  ASP   124     130.333  17.133  -1.311  1.00 25.00           C
ATOM    125  CA  ILE   125     130.956  14.994   1.805  1.00 25.00           C
ATOM    126  CA  TYR   126     133.253  12.685  -0.208  1.00 25.00           C
ATOM    127  CA  LEU   127     135.180  15.716  -1.535  1.00 25.00           C
ATOM    128  CA  ASP   128     135.560  17.065   2.029  1.00 25.00           C
ATOM    129  CA  LEU   129     136.848  13.656   3.208  1.00 25.00           C
ATOM    130  CA  MET   130     139.367  13.584   0.324  1.00 25.00           C
ATOM    131  CA  GLU   131     140.783  17.095   1.036  1.00 25.00           C
TER
END
