
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  129 (  129),  selected  129 , name T0302TS393_2-D1
# Molecule2: number of CA atoms  129 ( 2108),  selected  129 , name T0302_D1.pdb
# PARAMETERS: T0302TS393_2-D1.T0302_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   129         3 - 131         3.59     3.59
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        24 - 70          2.00     3.81
  LCS_AVERAGE:     29.70

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24       101 - 124         0.92     4.56
  LCS_AVERAGE:     10.94

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  129
LCS_GDT     V       3     V       3      3   13  129     2    4   11   20   44   66   88   98  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S       4     S       4      3   13  129     0   10   21   38   50   63   91   98  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     P       5     P       5     11   13  129     7   10   23   47   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E       6     E       6     11   13  129     7   10   29   48   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E       7     E       7     11   13  129     7   10   10   11   44   61   91  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     A       8     A       8     11   13  129     7   10   10   27   61   82   93  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     V       9     V       9     11   13  129     7   16   33   50   68   84   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      10     K      10     11   13  129     7   16   33   50   68   84   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     W      11     W      11     11   13  129     7   10   12   19   25   50   79   90  100  108  114  119  120  123  126  128  129  129  129  129 
LCS_GDT     G      12     G      12     11   13  129     4   10   10   24   35   43   56   84   93  105  111  118  120  123  126  128  129  129  129  129 
LCS_GDT     E      13     E      13     11   13  129     4   10   10   16   27   45   79   89  100  108  114  119  120  123  126  128  129  129  129  129 
LCS_GDT     S      14     S      14     11   13  129     6   10   18   27   35   50   79   90  100  107  112  119  120  123  126  128  129  129  129  129 
LCS_GDT     F      15     F      15     11   13  129     6    7   16   21   29   36   46   63   70  103  110  116  120  123  125  128  129  129  129  129 
LCS_GDT     D      16     D      16      6    7  129     6   11   16   19   49   64   84   99  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      17     K      17      6    7  129     6    9   36   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L      18     L      18      6    7  129     6    7    7    7   10   23   57   80   90  105  112  119  120  123  126  128  129  129  129  129 
LCS_GDT     L      19     L      19      6   38  129     6    7   16   47   65   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S      20     S      20      3   38  129     3   19   30   41   61   84   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     H      21     H      21      3   38  129     3    7   22   41   62   82   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     R      22     R      22     14   38  129    11   14   15   47   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     D      23     D      23     14   38  129    11   18   26   47   68   84   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     G      24     G      24     14   47  129    11   14   17   39   61   82   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L      25     L      25     14   47  129    11   14   25   47   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      26     E      26     14   47  129    11   22   36   55   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     A      27     A      27     14   47  129    11   18   33   49   65   84   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F      28     F      28     14   47  129    11   18   34   50   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T      29     T      29     14   47  129    11   26   43   56   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     R      30     R      30     14   47  129    11   22   35   52   67   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F      31     F      31     14   47  129    11   22   36   50   67   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L      32     L      32     14   47  129    11   26   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      33     K      33     14   47  129    10   26   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T      34     T      34     14   47  129    10   26   43   55   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      35     E      35     14   47  129    10   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F      36     F      36     10   47  129     3   16   30   42   59   79   93  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S      37     S      37     15   47  129    11   18   25   56   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      38     E      38     15   47  129     6   15   35   57   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      39     E      39     15   47  129     3   17   30   43   63   83   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     N      40     N      40     15   47  129     5   18   40   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I      41     I      41     15   47  129     7   26   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      42     E      42     15   47  129     4   13   31   52   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F      43     F      43     15   47  129     8   20   40   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     W      44     W      44     15   47  129    10   18   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I      45     I      45     15   47  129     8   18   38   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     A      46     A      46     15   47  129     8   15   36   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     C      47     C      47     15   47  129     8   20   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      48     E      48     15   47  129     8   22   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     D      49     D      49     15   47  129     8   14   36   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F      50     F      50     15   47  129     8   20   36   57   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      51     K      51     15   47  129     7   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      52     K      52     13   47  129    12   20   38   58   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S      53     S      53     13   47  129     4   18   34   50   67   78   91   98  108  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      54     K      54     12   47  129     4   10   26   44   64   75   91   98  107  112  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     G      55     G      55     16   47  129     3    7   28   50   64   78   91   98  107  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     P      56     P      56     16   47  129    10   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Q      57     Q      57     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Q      58     Q      58     16   47  129     7   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I      59     I      59     16   47  129     6   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     H      60     H      60     16   47  129     6   21   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L      61     L      61     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      62     K      62     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     A      63     A      63     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      64     K      64     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     A      65     A      65     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I      66     I      66     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Y      67     Y      67     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      68     E      68     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      69     K      69     16   47  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F      70     F      70     16   47  129     9   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I      71     I      71      4   41  129     0    4    5   16   42   68   81   96  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Q      72     Q      72      3   41  129     0    4   25   46   64   75   86   97  108  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T      73     T      73      3   38  129     3    4   14   40   56   68   81   91  100  109  115  117  120  123  126  128  129  129  129  129 
LCS_GDT     D      74     D      74      4   38  129     3    8   13   37   52   71   83   94  102  111  115  117  120  123  126  128  129  129  129  129 
LCS_GDT     A      75     A      75      4   36  129     3    3    7   21   32   55   75   97  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     P      76     P      76      4   17  129     3    3   10   15   34   53   74   96  106  110  113  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      77     K      77      4   17  129     3    3    4   15   16   17   19   28   57   75  104  116  119  123  125  128  129  129  129  129 
LCS_GDT     E      78     E      78      5   17  129     0    4    7    8   11   14   17   17   21   29   71   86  109  123  124  128  129  129  129  129 
LCS_GDT     V      79     V      79      6   17  129     3    4    7   12   16   16   20   32   56   67  102  116  119  123  126  128  129  129  129  129 
LCS_GDT     N      80     N      80      6   17  129     3    4   10   15   16   21   43   55   65   87  105  116  120  123  126  128  129  129  129  129 
LCS_GDT     L      81     L      81      6   18  129     3    4   10   15   16   28   47   59   72   90  106  116  120  123  126  128  129  129  129  129 
LCS_GDT     D      82     D      82     11   26  129     3    4   10   15   34   47   64   78   93  104  115  117  120  123  126  128  129  129  129  129 
LCS_GDT     F      83     F      83     13   42  129    10   17   35   51   69   80   92   99  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     H      84     H      84     13   42  129    10   20   36   57   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T      85     T      85     13   42  129    10   20   36   57   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K      86     K      86     13   42  129    10   20   35   55   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E      87     E      87     13   42  129    10   20   36   58   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     V      88     V      88     13   42  129    10   26   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I      89     I      89     13   42  129    10   20   41   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T      90     T      90     13   42  129    10   20   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     N      91     N      91     13   42  129    10   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S      92     S      92     13   42  129    10   16   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I      93     I      93     13   42  129     4   20   36   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T      94     T      94     13   42  129     6   20   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Q      95     Q      95     13   42  129     4    7   28   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     P      96     P      96      9   42  129     4   20   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T      97     T      97      7   42  129     4   18   35   56   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L      98     L      98      7   42  129     3   15   32   50   69   82   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     H      99     H      99      7   42  129     4    6   18   34   50   69   89   98  107  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S     100     S     100     15   42  129     4    9   19   50   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F     101     F     101     24   42  129     5   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     D     102     D     102     24   42  129     7   26   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     A     103     A     103     24   42  129    11   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     A     104     A     104     24   42  129    11   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Q     105     Q     105     24   42  129    11   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S     106     S     106     24   42  129    11   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     R     107     R     107     24   42  129    11   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     V     108     V     108     24   42  129    11   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Y     109     Y     109     24   42  129    11   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Q     110     Q     110     24   42  129    11   20   40   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L     111     L     111     24   42  129    11   20   37   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     M     112     M     112     24   42  129    11   20   37   56   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E     113     E     113     24   42  129    11   20   37   56   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Q     114     Q     114     24   42  129    11   20   37   56   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     D     115     D     115     24   42  129     3    3   24   41   59   79   93  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S     116     S     116     24   42  129     4   19   34   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Y     117     Y     117     24   42  129    12   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     T     118     T     118     24   42  129     6   20   37   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     R     119     R     119     24   42  129     5   19   40   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     F     120     F     120     24   42  129     5   20   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L     121     L     121     24   42  129    10   27   43   58   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     K     122     K     122     24   42  129     7   19   37   58   69   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     S     123     S     123     24   42  129     4   16   30   52   69   81   94  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     D     124     D     124     24   42  129     5   20   35   57   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     I     125     I     125     13   42  129     5   10   19   39   57   82   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     Y     126     Y     126     13   42  129     5   10   17   42   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L     127     L     127     13   42  129     5   16   30   57   70   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     D     128     D     128     13   41  129     5    9   19   38   50   63   87   97  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     L     129     L     129     13   33  129     5    7   17   27   46   62   75   97  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     M     130     M     130     13   33  129     5   10   23   41   56   85   95  100  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_GDT     E     131     E     131     11   33  129     3   10   17   33   50   63   88   99  109  113  115  119  120  123  126  128  129  129  129  129 
LCS_AVERAGE  LCS_A:  46.88  (  10.94   29.70  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     27     43     58     70     85     95    100    109    113    115    119    120    123    126    128    129    129    129    129 
GDT PERCENT_CA   9.30  20.93  33.33  44.96  54.26  65.89  73.64  77.52  84.50  87.60  89.15  92.25  93.02  95.35  97.67  99.22 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.34   0.73   1.02   1.37   1.64   1.92   2.17   2.30   2.55   2.67   2.75   2.98   3.02   3.20   3.37   3.51   3.59   3.59   3.59   3.59
GDT RMS_ALL_CA   4.28   3.84   3.76   3.85   3.68   3.69   3.62   3.62   3.62   3.62   3.63   3.60   3.62   3.60   3.60   3.59   3.59   3.59   3.59   3.59

#      Molecule1      Molecule2       DISTANCE
LGA    V       3      V       3          4.409
LGA    S       4      S       4          4.412
LGA    P       5      P       5          2.533
LGA    E       6      E       6          2.664
LGA    E       7      E       7          3.950
LGA    A       8      A       8          3.638
LGA    V       9      V       9          2.543
LGA    K      10      K      10          2.535
LGA    W      11      W      11          6.252
LGA    G      12      G      12          7.454
LGA    E      13      E      13          6.086
LGA    S      14      S      14          6.756
LGA    F      15      F      15          7.869
LGA    D      16      D      16          4.274
LGA    K      17      K      17          2.197
LGA    L      18      L      18          6.278
LGA    L      19      L      19          2.942
LGA    S      20      S      20          3.109
LGA    H      21      H      21          3.402
LGA    R      22      R      22          2.507
LGA    D      23      D      23          2.552
LGA    G      24      G      24          3.365
LGA    L      25      L      25          2.536
LGA    E      26      E      26          1.768
LGA    A      27      A      27          2.908
LGA    F      28      F      28          2.312
LGA    T      29      T      29          1.629
LGA    R      30      R      30          2.653
LGA    F      31      F      31          2.891
LGA    L      32      L      32          1.645
LGA    K      33      K      33          1.640
LGA    T      34      T      34          2.121
LGA    E      35      E      35          1.707
LGA    F      36      F      36          3.922
LGA    S      37      S      37          2.703
LGA    E      38      E      38          1.639
LGA    E      39      E      39          2.951
LGA    N      40      N      40          1.522
LGA    I      41      I      41          0.882
LGA    E      42      E      42          2.079
LGA    F      43      F      43          1.242
LGA    W      44      W      44          1.185
LGA    I      45      I      45          0.887
LGA    A      46      A      46          1.628
LGA    C      47      C      47          1.616
LGA    E      48      E      48          0.658
LGA    D      49      D      49          1.387
LGA    F      50      F      50          2.346
LGA    K      51      K      51          1.627
LGA    K      52      K      52          3.406
LGA    S      53      S      53          4.843
LGA    K      54      K      54          5.951
LGA    G      55      G      55          5.379
LGA    P      56      P      56          1.703
LGA    Q      57      Q      57          1.623
LGA    Q      58      Q      58          2.074
LGA    I      59      I      59          2.180
LGA    H      60      H      60          2.371
LGA    L      61      L      61          1.968
LGA    K      62      K      62          1.863
LGA    A      63      A      63          1.332
LGA    K      64      K      64          1.722
LGA    A      65      A      65          1.884
LGA    I      66      I      66          1.711
LGA    Y      67      Y      67          1.302
LGA    E      68      E      68          2.620
LGA    K      69      K      69          2.604
LGA    F      70      F      70          1.230
LGA    I      71      I      71          5.206
LGA    Q      72      Q      72          5.454
LGA    T      73      T      73          7.825
LGA    D      74      D      74          7.168
LGA    A      75      A      75          4.934
LGA    P      76      P      76          5.532
LGA    K      77      K      77          7.966
LGA    E      78      E      78          9.146
LGA    V      79      V      79          7.651
LGA    N      80      N      80          7.573
LGA    L      81      L      81          7.719
LGA    D      82      D      82          7.265
LGA    F      83      F      83          4.528
LGA    H      84      H      84          3.938
LGA    T      85      T      85          3.766
LGA    K      86      K      86          3.784
LGA    E      87      E      87          3.388
LGA    V      88      V      88          2.362
LGA    I      89      I      89          2.431
LGA    T      90      T      90          2.495
LGA    N      91      N      91          1.822
LGA    S      92      S      92          2.023
LGA    I      93      I      93          2.559
LGA    T      94      T      94          1.922
LGA    Q      95      Q      95          2.767
LGA    P      96      P      96          1.616
LGA    T      97      T      97          2.653
LGA    L      98      L      98          3.465
LGA    H      99      H      99          4.851
LGA    S     100      S     100          3.109
LGA    F     101      F     101          1.069
LGA    D     102      D     102          0.941
LGA    A     103      A     103          1.294
LGA    A     104      A     104          1.186
LGA    Q     105      Q     105          0.822
LGA    S     106      S     106          1.117
LGA    R     107      R     107          0.568
LGA    V     108      V     108          0.580
LGA    Y     109      Y     109          0.969
LGA    Q     110      Q     110          1.650
LGA    L     111      L     111          1.609
LGA    M     112      M     112          2.192
LGA    E     113      E     113          2.550
LGA    Q     114      Q     114          2.256
LGA    D     115      D     115          3.853
LGA    S     116      S     116          2.375
LGA    Y     117      Y     117          0.743
LGA    T     118      T     118          1.618
LGA    R     119      R     119          1.792
LGA    F     120      F     120          1.116
LGA    L     121      L     121          0.580
LGA    K     122      K     122          2.890
LGA    S     123      S     123          3.621
LGA    D     124      D     124          2.852
LGA    I     125      I     125          3.335
LGA    Y     126      Y     126          2.535
LGA    L     127      L     127          2.849
LGA    D     128      D     128          4.815
LGA    L     129      L     129          4.658
LGA    M     130      M     130          3.041
LGA    E     131      E     131          4.692

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  129  129    4.0    100    2.30    60.659    57.166     4.175

LGA_LOCAL      RMSD =  2.295  Number of atoms =  100  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.613  Number of atoms =  129 
Std_ALL_ATOMS  RMSD =  3.589  (standard rmsd on all 129 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.688625 * X  +   0.425299 * Y  +  -0.587295 * Z  + 123.126282
  Y_new =   0.275709 * X  +  -0.595528 * Y  +  -0.754540 * Z  +  -3.952579
  Z_new =  -0.670656 * X  +  -0.681518 * Y  +   0.292837 * Z  +   0.502661 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.164966    1.976627  [ DEG:   -66.7476    113.2524 ]
  Theta =   0.735093    2.406500  [ DEG:    42.1177    137.8823 ]
  Phi   =   2.760762   -0.380830  [ DEG:   158.1800    -21.8200 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0302TS393_2-D1                               
REMARK     2: T0302_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0302TS393_2-D1.T0302_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  129  129   4.0  100   2.30  57.166     3.59
REMARK  ---------------------------------------------------------- 
MOLECULE T0302TS393_2-D1
PFRMAT TS
TARGET T0302
MODEL 2
PARENT N/A
ATOM      3  CA  VAL     3     143.663   9.362   4.072  1.00 25.00           C
ATOM      4  CA  SER     4     143.517  12.319   1.666  1.00 25.00           C
ATOM      5  CA  PRO     5     142.885  13.168  -1.969  1.00 25.00           C
ATOM      6  CA  GLU     6     142.617  11.639  -5.471  1.00 25.00           C
ATOM      7  CA  GLU     7     144.110   8.358  -4.178  1.00 25.00           C
ATOM      8  CA  ALA     8     141.603   8.328  -1.283  1.00 25.00           C
ATOM      9  CA  VAL     9     138.724   8.921  -3.739  1.00 25.00           C
ATOM     10  CA  LYS    10     139.975   6.046  -5.938  1.00 25.00           C
ATOM     11  CA  TRP    11     140.163   3.753  -2.877  1.00 25.00           C
ATOM     12  CA  GLY    12     136.591   4.726  -1.898  1.00 25.00           C
ATOM     13  CA  GLU    13     135.387   3.982  -5.456  1.00 25.00           C
ATOM     14  CA  SER    14     137.121   0.570  -5.356  1.00 25.00           C
ATOM     15  CA  PHE    15     135.467  -0.200  -1.989  1.00 25.00           C
ATOM     16  CA  ASP    16     132.051   0.782  -3.416  1.00 25.00           C
ATOM     17  CA  LYS    17     132.635  -1.488  -6.445  1.00 25.00           C
ATOM     18  CA  LEU    18     133.592  -4.379  -4.123  1.00 25.00           C
ATOM     19  CA  LEU    19     130.418  -3.804  -2.058  1.00 25.00           C
ATOM     20  CA  SER    20     132.755  -3.288   0.897  1.00 25.00           C
ATOM     21  CA  HIS    21     136.279  -3.612   2.193  1.00 25.00           C
ATOM     22  CA  ARG    22     137.849  -0.474   3.615  1.00 25.00           C
ATOM     23  CA  ASP    23     137.807   2.601   5.898  1.00 25.00           C
ATOM     24  CA  GLY    24     135.720   4.516   3.321  1.00 25.00           C
ATOM     25  CA  LEU    25     133.264   1.587   3.096  1.00 25.00           C
ATOM     26  CA  GLU    26     132.981   1.499   6.914  1.00 25.00           C
ATOM     27  CA  ALA    27     132.313   5.270   6.976  1.00 25.00           C
ATOM     28  CA  PHE    28     129.605   4.858   4.299  1.00 25.00           C
ATOM     29  CA  THR    29     127.991   2.041   6.330  1.00 25.00           C
ATOM     30  CA  ARG    30     128.036   4.241   9.464  1.00 25.00           C
ATOM     31  CA  PHE    31     126.412   7.105   7.508  1.00 25.00           C
ATOM     32  CA  LEU    32     123.707   4.720   6.217  1.00 25.00           C
ATOM     33  CA  LYS    33     123.048   3.496   9.785  1.00 25.00           C
ATOM     34  CA  THR    34     122.758   7.115  11.000  1.00 25.00           C
ATOM     35  CA  GLU    35     119.693   7.440   8.821  1.00 25.00           C
ATOM     36  CA  PHE    36     117.509   7.132   5.678  1.00 25.00           C
ATOM     37  CA  SER    37     119.145   4.317   3.605  1.00 25.00           C
ATOM     38  CA  GLU    38     120.041   0.955   5.236  1.00 25.00           C
ATOM     39  CA  GLU    39     117.462  -1.605   4.026  1.00 25.00           C
ATOM     40  CA  ASN    40     119.557  -2.269   0.889  1.00 25.00           C
ATOM     41  CA  ILE    41     122.682  -2.759   3.050  1.00 25.00           C
ATOM     42  CA  GLU    42     120.775  -5.205   5.296  1.00 25.00           C
ATOM     43  CA  PHE    43     119.586  -7.145   2.216  1.00 25.00           C
ATOM     44  CA  TRP    44     123.179  -7.305   0.900  1.00 25.00           C
ATOM     45  CA  ILE    45     124.393  -8.588   4.297  1.00 25.00           C
ATOM     46  CA  ALA    46     121.652 -11.263   4.294  1.00 25.00           C
ATOM     47  CA  CYS    47     122.663 -12.330   0.758  1.00 25.00           C
ATOM     48  CA  GLU    48     126.327 -12.565   1.850  1.00 25.00           C
ATOM     49  CA  ASP    49     125.316 -14.695   4.868  1.00 25.00           C
ATOM     50  CA  PHE    50     123.277 -17.001   2.589  1.00 25.00           C
ATOM     51  CA  LYS    51     126.269 -17.349   0.223  1.00 25.00           C
ATOM     52  CA  LYS    52     129.375 -19.380   1.180  1.00 25.00           C
ATOM     53  CA  SER    53     127.372 -22.588   1.128  1.00 25.00           C
ATOM     54  CA  LYS    54     126.677 -25.134  -1.620  1.00 25.00           C
ATOM     55  CA  GLY    55     125.432 -27.578   1.049  1.00 25.00           C
ATOM     56  CA  PRO    56     122.101 -27.734   2.868  1.00 25.00           C
ATOM     57  CA  GLN    57     119.568 -27.622   5.739  1.00 25.00           C
ATOM     58  CA  GLN    58     121.653 -24.941   7.507  1.00 25.00           C
ATOM     59  CA  ILE    59     121.802 -22.890   4.277  1.00 25.00           C
ATOM     60  CA  HIS    60     118.003 -23.189   3.883  1.00 25.00           C
ATOM     61  CA  LEU    61     117.513 -22.042   7.504  1.00 25.00           C
ATOM     62  CA  LYS    62     119.821 -19.047   6.893  1.00 25.00           C
ATOM     63  CA  ALA    63     117.848 -18.140   3.738  1.00 25.00           C
ATOM     64  CA  LYS    64     114.565 -18.356   5.698  1.00 25.00           C
ATOM     65  CA  ALA    65     116.017 -16.094   8.427  1.00 25.00           C
ATOM     66  CA  ILE    66     117.135 -13.569   5.773  1.00 25.00           C
ATOM     67  CA  TYR    67     113.634 -13.614   4.220  1.00 25.00           C
ATOM     68  CA  GLU    68     112.071 -13.029   7.667  1.00 25.00           C
ATOM     69  CA  LYS    69     114.454 -10.093   8.276  1.00 25.00           C
ATOM     70  CA  PHE    70     113.529  -8.604   4.871  1.00 25.00           C
ATOM     71  CA  ILE    71     109.806  -8.962   5.698  1.00 25.00           C
ATOM     72  CA  GLN    72     107.321 -11.363   7.374  1.00 25.00           C
ATOM     73  CA  THR    73     105.611  -8.583   9.356  1.00 25.00           C
ATOM     74  CA  ASP    74     107.829  -6.205  11.323  1.00 25.00           C
ATOM     75  CA  ALA    75     108.394  -3.019   9.414  1.00 25.00           C
ATOM     76  CA  PRO    76     104.681  -2.395   9.314  1.00 25.00           C
ATOM     77  CA  LYS    77     104.149  -1.794   5.594  1.00 25.00           C
ATOM     78  CA  GLU    78     102.799   0.532   2.902  1.00 25.00           C
ATOM     79  CA  VAL    79     106.151   0.048   1.277  1.00 25.00           C
ATOM     80  CA  ASN    80     104.623   0.151  -2.251  1.00 25.00           C
ATOM     81  CA  LEU    81     105.379  -3.354  -3.598  1.00 25.00           C
ATOM     82  CA  ASP    82     104.786  -4.833  -7.099  1.00 25.00           C
ATOM     83  CA  PHE    83     104.915  -8.304  -5.619  1.00 25.00           C
ATOM     84  CA  HIS    84     106.722 -10.594  -8.099  1.00 25.00           C
ATOM     85  CA  THR    85     109.830 -10.606  -5.862  1.00 25.00           C
ATOM     86  CA  LYS    86     107.670 -11.487  -2.825  1.00 25.00           C
ATOM     87  CA  GLU    87     106.040 -14.346  -4.783  1.00 25.00           C
ATOM     88  CA  VAL    88     109.493 -15.647  -5.806  1.00 25.00           C
ATOM     89  CA  ILE    89     110.651 -15.513  -2.159  1.00 25.00           C
ATOM     90  CA  THR    90     107.524 -17.435  -1.069  1.00 25.00           C
ATOM     91  CA  ASN    91     108.179 -20.078  -3.761  1.00 25.00           C
ATOM     92  CA  SER    92     111.807 -20.415  -2.582  1.00 25.00           C
ATOM     93  CA  ILE    93     110.618 -20.831   1.035  1.00 25.00           C
ATOM     94  CA  THR    94     110.421 -24.677   0.789  1.00 25.00           C
ATOM     95  CA  GLN    95     113.606 -26.568  -0.210  1.00 25.00           C
ATOM     96  CA  PRO    96     115.680 -23.495  -0.755  1.00 25.00           C
ATOM     97  CA  THR    97     118.100 -23.245  -3.736  1.00 25.00           C
ATOM     98  CA  LEU    98     120.526 -20.392  -3.086  1.00 25.00           C
ATOM     99  CA  HIS    99     118.889 -17.932  -5.483  1.00 25.00           C
ATOM    100  CA  SER   100     116.053 -15.569  -4.462  1.00 25.00           C
ATOM    101  CA  PHE   101     118.323 -13.936  -1.846  1.00 25.00           C
ATOM    102  CA  ASP   102     121.072 -13.487  -4.474  1.00 25.00           C
ATOM    103  CA  ALA   103     118.549 -11.897  -6.877  1.00 25.00           C
ATOM    104  CA  ALA   104     117.378  -9.519  -4.114  1.00 25.00           C
ATOM    105  CA  GLN   105     121.009  -8.556  -3.370  1.00 25.00           C
ATOM    106  CA  SER   106     121.620  -7.890  -7.092  1.00 25.00           C
ATOM    107  CA  ARG   107     118.478  -5.706  -7.243  1.00 25.00           C
ATOM    108  CA  VAL   108     119.660  -3.751  -4.168  1.00 25.00           C
ATOM    109  CA  TYR   109     123.093  -3.236  -5.784  1.00 25.00           C
ATOM    110  CA  GLN   110     121.421  -1.990  -8.997  1.00 25.00           C
ATOM    111  CA  LEU   111     119.270   0.440  -6.964  1.00 25.00           C
ATOM    112  CA  MET   112     122.391   1.729  -5.158  1.00 25.00           C
ATOM    113  CA  GLU   113     124.160   2.230  -8.517  1.00 25.00           C
ATOM    114  CA  GLN   114     121.126   4.145  -9.857  1.00 25.00           C
ATOM    115  CA  ASP   115     120.572   7.446  -8.175  1.00 25.00           C
ATOM    116  CA  SER   116     121.264   6.596  -4.551  1.00 25.00           C
ATOM    117  CA  TYR   117     125.081   6.632  -4.880  1.00 25.00           C
ATOM    118  CA  THR   118     125.452   9.582  -7.293  1.00 25.00           C
ATOM    119  CA  ARG   119     123.696  11.884  -4.787  1.00 25.00           C
ATOM    120  CA  PHE   120     126.031  10.676  -2.002  1.00 25.00           C
ATOM    121  CA  LEU   121     129.073  11.334  -4.235  1.00 25.00           C
ATOM    122  CA  LYS   122     127.843  14.711  -5.535  1.00 25.00           C
ATOM    123  CA  SER   123     126.583  15.675  -2.014  1.00 25.00           C
ATOM    124  CA  ASP   124     128.716  16.407   1.059  1.00 25.00           C
ATOM    125  CA  ILE   125     131.587  15.181   3.278  1.00 25.00           C
ATOM    126  CA  TYR   126     133.342  13.682   0.222  1.00 25.00           C
ATOM    127  CA  LEU   127     132.933  16.990  -1.665  1.00 25.00           C
ATOM    128  CA  ASP   128     134.390  18.900   1.317  1.00 25.00           C
ATOM    129  CA  LEU   129     137.364  16.489   1.438  1.00 25.00           C
ATOM    130  CA  MET   130     137.944  16.977  -2.315  1.00 25.00           C
ATOM    131  CA  GLU   131     139.052  20.577  -1.765  1.00 25.00           C
TER
END
