
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  107 , name T0304TS393_2
# Molecule2: number of CA atoms  107 (  848),  selected  107 , name T0304.pdb
# PARAMETERS: T0304TS393_2.T0304.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43        40 - 82          4.99    21.35
  LONGEST_CONTINUOUS_SEGMENT:    43        41 - 83          4.94    21.00
  LONGEST_CONTINUOUS_SEGMENT:    43        42 - 84          4.89    20.75
  LONGEST_CONTINUOUS_SEGMENT:    43        43 - 85          4.78    20.39
  LCS_AVERAGE:     27.42

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        56 - 78          1.99    22.61
  LONGEST_CONTINUOUS_SEGMENT:    23        58 - 80          1.94    22.18
  LCS_AVERAGE:     10.46

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        63 - 78          0.86    22.41
  LCS_AVERAGE:      5.62

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  107
LCS_GDT     D      16     D      16      3    8   15     0    3    5    6    7    9   10   12   14   17   21   26   30   32   35   39   43   45   47   50 
LCS_GDT     R      17     R      17      3    8   15     3    4    5    6    6    9    9   11   11   13   21   26   30   32   35   39   43   45   47   50 
LCS_GDT     P      18     P      18      4    8   15     3    4    5    6    7    9   10   11   13   17   21   26   30   32   35   39   43   45   47   50 
LCS_GDT     W      19     W      19      4    8   15     3    3    4    6    7    9   10   11   11   14   21   26   30   32   35   39   43   45   47   50 
LCS_GDT     W      20     W      20      4    8   15     3    3    5    6    7    9   10   11   11   13   21   26   30   32   35   39   43   45   47   50 
LCS_GDT     G      21     G      21      4    8   15     3    4    5    6    7    9   10   11   11   13   15   16   17   28   33   35   40   42   47   49 
LCS_GDT     L      22     L      22      3    8   15     3    4    5    6    7    9   10   11   11   13   15   16   23   32   35   39   43   45   47   50 
LCS_GDT     P      23     P      23      3    8   15     3    3    5    6    7    9   12   15   15   20   21   26   30   32   35   39   43   45   47   50 
LCS_GDT     C      24     C      24      3    8   15     3    3    5    6    7    9   12   15   15   20   21   22   25   31   35   39   43   45   47   50 
LCS_GDT     T      25     T      25      3    8   15     3    3    5    6    7    9   13   13   14   16   18   21   24   31   35   39   42   43   47   50 
LCS_GDT     V      26     V      26      3    8   15     3    3    4    6    7    8   10   11   11   12   15   17   23   26   35   39   42   44   47   50 
LCS_GDT     T      27     T      27      3    6   15     0    3    4    5    6    7    8   10   11   12   14   15   17   21   23   28   32   35   37   39 
LCS_GDT     P      28     P      28      3    6   15     3    4    4    5    6    7    8   10   11   12   14   15   18   21   27   29   33   35   37   39 
LCS_GDT     C      29     C      29      3    6   15     3    4    4    5    7    9   13   13   13   16   18   21   24   27   28   29   33   35   37   39 
LCS_GDT     F      30     F      30      3    6   15     3    4    5    5    6    7   13   13   14   16   18   22   24   27   28   33   38   41   45   50 
LCS_GDT     G      31     G      31      3    6   14     3    3    5    5    6    6    7    9   14   17   20   25   30   34   38   40   43   45   47   50 
LCS_GDT     A      32     A      32      3    3   12     3    3    5    5    5    9   11   16   23   29   34   37   38   41   42   42   44   45   49   50 
LCS_GDT     R      33     R      33      3    3   12     3    3    4    4    4    7    7   16   27   32   35   37   39   41   43   44   47   49   52   56 
LCS_GDT     L      34     L      34      3    3   12     3    3    3    4    6    7   13   28   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     V      35     V      35      3    3   12     3    3    3    4    6    9   10   17   20   23   31   34   37   41   43   45   49   53   54   56 
LCS_GDT     Q      36     Q      36      3    4   14     3    3    3    5    9   11   12   14   20   26   32   34   37   39   42   45   49   53   54   56 
LCS_GDT     E      37     E      37      3    5   14     3    4    4    4    6    9   11   12   13   15   15   19   21   23   28   34   41   42   45   52 
LCS_GDT     G      38     G      38      3    5   14     3    3    4    4    6    9   11   12   13   14   15   16   20   21   25   29   32   36   40   45 
LCS_GDT     N      39     N      39      3    5   14     3    4    4    4    5    5   10   12   13   14   16   20   21   24   27   29   32   36   41   46 
LCS_GDT     R      40     R      40      3    5   43     3    4    4    4    5    7    9   12   13   16   18   20   24   26   28   36   36   42   45   48 
LCS_GDT     L      41     L      41      3    5   43     0    4    4    4    5    9   13   13   14   16   19   21   26   29   31   38   41   45   49   52 
LCS_GDT     H      42     H      42      3    3   43     0    3    3    4    5   12   13   13   18   20   22   25   28   38   39   40   43   47   52   55 
LCS_GDT     Y      43     Y      43      3    3   43     1    4    5    7    8   12   14   20   27   33   35   36   38   39   42   45   49   53   54   56 
LCS_GDT     L      44     L      44      4    6   43     4    4    4    5    5   12   13   16   21   33   35   35   38   39   41   43   46   50   53   55 
LCS_GDT     A      45     A      45      4    6   43     4    4    4    5    9   12   13   24   28   33   35   36   38   39   42   45   49   53   54   56 
LCS_GDT     D      46     D      46      4    6   43     4    4    4    5    9   12   18   24   28   33   35   36   38   39   42   45   49   53   54   56 
LCS_GDT     R      47     R      47      4    6   43     4    4    4    5    7   12   18   23   28   33   35   36   38   39   42   45   49   53   54   56 
LCS_GDT     A      48     A      48      4    6   43     3    4    4    5    6   16   21   27   30   33   35   36   38   39   42   45   49   53   54   56 
LCS_GDT     G      49     G      49      4    7   43     3    4   11   16   20   24   27   29   30   33   35   36   38   39   42   45   49   53   54   56 
LCS_GDT     I      50     I      50      4    7   43     3    4    6   10   12   24   27   29   30   31   35   36   38   39   43   45   49   53   54   56 
LCS_GDT     R      51     R      51      4    7   43     3    4    4    6    7   11   13   15   20   29   32   36   38   39   42   45   49   53   54   56 
LCS_GDT     G      52     G      52      3    7   43     3    3    4    6    9   14   26   29   30   31   35   36   38   39   43   45   49   53   54   56 
LCS_GDT     L      53     L      53      3   14   43     3    3    4    6   14   24   27   29   30   33   35   36   38   41   43   45   49   53   54   56 
LCS_GDT     F      54     F      54      3   18   43     3    3   10   14   18   21   25   29   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     S      55     S      55      3   18   43     3    3    4   10   16   20   23   28   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     D      56     D      56     13   23   43     9   11   12   16   19   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     A      57     A      57     13   23   43     9   11   12   16   17   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     D      58     D      58     13   23   43     9   11   12   16   19   24   27   29   30   33   35   36   39   41   43   45   49   53   54   56 
LCS_GDT     A      59     A      59     13   23   43     9   11   12   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     Y      60     Y      60     13   23   43     9   11   12   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     H      61     H      61     13   23   43     9   11   13   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L      62     L      62     13   23   43     9   11   14   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     D      63     D      63     16   23   43     9   11   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     Q      64     Q      64     16   23   43     9   11   14   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     A      65     A      65     16   23   43    14   15   16   18   21   22   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     F      66     F      66     16   23   43    14   15   16   18   21   22   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     P      67     P      67     16   23   43    14   15   16   18   21   22   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L      68     L      68     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L      69     L      69     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     M      70     M      70     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     K      71     K      71     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     Q      72     Q      72     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L      73     L      73     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     E      74     E      74     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L      75     L      75     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     M      76     M      76     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L      77     L      77     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     T      78     T      78     16   23   43    14   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     S      79     S      79      3   23   43     3    3    4    7   19   22   25   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     G      80     G      80      3   23   43     3   15   16   18   21   24   27   29   30   33   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     E      81     E      81      3   20   43     3    3    4    6    9   19   21   27   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L      82     L      82      3    7   43     3    3    4    6    7    9   15   21   24   29   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     N      83     N      83      4    7   43     3    4    4    5    7    9   12   19   24   26   33   37   39   41   43   45   49   53   54   56 
LCS_GDT     P      84     P      84      4    7   43     3    4    4    6    7    9   10   12   17   20   22   24   29   35   39   43   45   49   52   54 
LCS_GDT     R      85     R      85      4    7   43     3    4    4    8    9   19   22   25   28   30   33   37   39   41   43   45   49   53   54   56 
LCS_GDT     H      86     H      86      4    8   42     3    4    4    8    9   16   22   28   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     Q      87     Q      87      4   11   40     3    4    6    7   11   13   22   28   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     H      88     H      88      4   11   40     3    4    6    7   11   12   17   24   29   32   35   37   39   41   42   45   48   53   54   56 
LCS_GDT     T      89     T      89      4   11   38     3    4    6    7   10   12   15   18   23   25   30   35   38   39   40   42   44   45   49   51 
LCS_GDT     V      90     V      90      4   11   37     3    4    6    7   11   12   13   15   17   21   23   26   30   34   37   40   43   45   47   50 
LCS_GDT     T      91     T      91      4   11   25     3    4    6    7   11   12   13   15   17   21   23   26   30   32   35   39   43   45   47   50 
LCS_GDT     L      92     L      92      4   11   25     3    4    6    8   11   12   13   15   17   21   23   25   30   32   35   39   43   45   47   50 
LCS_GDT     Y      93     Y      93      5   11   25     3    3    6    8   11   12   13   15   17   21   23   26   30   32   35   39   43   45   47   50 
LCS_GDT     A      94     A      94      5   11   25     4    4    6    8   11   12   13   15   17   21   23   26   30   32   35   39   43   45   47   50 
LCS_GDT     K      95     K      95      5   11   25     4    4    6    8   11   12   13   15   17   21   23   26   30   32   35   39   43   45   47   50 
LCS_GDT     G      96     G      96      5   11   25     4    4    6    8   11   12   13   15   16   21   23   26   30   32   35   39   43   45   47   50 
LCS_GDT     L      97     L      97      5   11   25     4    4    6    8   11   12   13   15   17   21   23   26   30   32   35   39   43   45   47   50 
LCS_GDT     T      98     T      98      5    8   25     3    4    5    6    7    7    9   12   16   16   23   25   26   32   35   39   43   45   47   50 
LCS_GDT     C      99     C      99      3    6   18     3    3    4    5    6    9   13   13   15   17   21   26   30   32   35   39   43   45   47   50 
LCS_GDT     K     100     K     100      4    6   18     3    4    4    6    7    9   13   13   14   16   18   21   24   27   35   39   43   45   47   50 
LCS_GDT     A     101     A     101      4    6   17     3    3    4    6    6    8   13   13   14   16   18   21   24   27   29   31   33   37   40   45 
LCS_GDT     D     102     D     102      4    6   16     3    4    4    6    7    9   13   13   14   16   18   22   24   29   31   31   33   36   40   45 
LCS_GDT     T     103     T     103      4    6   18     2    4    4    6    6    9   13   13   14   16   22   25   26   29   31   33   36   40   45   48 
LCS_GDT     L     104     L     104      3    6   18     3    3    3    6    6    9   11   12   14   16   20   23   26   29   31   35   37   40   45   48 
LCS_GDT     S     105     S     105      3    6   18     3    3    3    6    7    9   13   13   17   18   22   25   26   29   33   35   37   40   45   48 
LCS_GDT     S     106     S     106      3    4   18     3    3    4    7    7    9   13   14   17   20   22   25   28   29   33   35   37   40   45   49 
LCS_GDT     C     107     C     107      3    4   18     3    3    3    4    6    9   11   12   14   16   18   21   28   29   32   35   37   43   45   49 
LCS_GDT     D     108     D     108      3    8   18     3    3    3    4    6   12   13   13   18   20   21   26   31   36   38   45   48   53   54   56 
LCS_GDT     Y     109     Y     109      4    8   18     1    3    6    7    9   12   13   14   18   20   22   25   29   34   37   45   48   51   54   56 
LCS_GDT     V     110     V     110      4    8   18     3    4    6    7    9   12   13   14   18   20   23   26   30   35   41   45   49   53   54   56 
LCS_GDT     Y     111     Y     111      4    8   18     3    4    6    7    9   13   23   28   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     L     112     L     112      4    8   18     3    4    6    8   14   20   23   28   30   32   35   37   39   41   43   45   49   53   54   56 
LCS_GDT     A     113     A     113      4    8   18     3    4    5    5    8   12   13   14   23   30   35   37   39   41   43   45   48   53   54   56 
LCS_GDT     V     114     V     114      4    8   18     1    4    6    7    9   12   13   14   18   23   31   36   38   41   43   45   49   53   54   56 
LCS_GDT     Y     115     Y     115      3    8   18     1    3    6    7    9   12   13   14   18   20   22   25   28   29   33   38   41   46   50   56 
LCS_GDT     P     116     P     116      3    8   18     0    3    5    6    6    9   10   12   13   16   17   22   26   29   33   38   41   43   45   48 
LCS_GDT     T     117     T     117      3    8   18     1    3    5    5    6    9   11   13   15   17   22   24   28   35   36   39   41   43   45   48 
LCS_GDT     P     118     P     118      3    8   18     3    3    5    6    6    9   10   13   15   17   22   24   28   31   36   38   41   43   45   48 
LCS_GDT     E     119     E     119      3    8   18     3    3    5    5    6    9   11   13   15   17   22   24   27   29   32   36   41   42   45   48 
LCS_GDT     M     120     M     120      3    8   18     3    3    5    6    6    9   11   13   15   17   22   24   28   31   34   37   41   43   45   47 
LCS_GDT     K     121     K     121      3    7   14     0    3    4    6    6    8    9   10   13   15   17   20   23   28   29   31   34   40   42   45 
LCS_GDT     N     122     N     122      3    4   14     0    3    3    3    4    5    5    7   11   11   13   15   19   21   23   26   32   37   39   42 
LCS_AVERAGE  LCS_A:  14.50  (   5.62   10.46   27.42 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     18     21     24     27     29     30     33     35     37     39     41     43     45     49     53     54     56 
GDT PERCENT_CA  13.08  14.02  14.95  16.82  19.63  22.43  25.23  27.10  28.04  30.84  32.71  34.58  36.45  38.32  40.19  42.06  45.79  49.53  50.47  52.34
GDT RMS_LOCAL    0.17   0.37   0.71   1.03   1.53   2.01   2.19   2.41   2.54   3.37   3.48   3.82   3.99   4.19   4.60   5.21   5.65   6.06   6.15   6.35
GDT RMS_ALL_CA  22.86  22.66  22.17  22.24  22.02  21.73  21.82  21.49  21.31  22.01  21.80  15.76  15.83  15.70  16.75  17.10  18.58  18.13  18.02  17.86

#      Molecule1      Molecule2       DISTANCE
LGA    D      16      D      16         51.689
LGA    R      17      R      17         49.949
LGA    P      18      P      18         46.474
LGA    W      19      W      19         43.174
LGA    W      20      W      20         38.098
LGA    G      21      G      21         37.605
LGA    L      22      L      22         35.155
LGA    P      23      P      23         37.418
LGA    C      24      C      24         35.422
LGA    T      25      T      25         39.284
LGA    V      26      V      26         36.326
LGA    T      27      T      27         34.924
LGA    P      28      P      28         31.387
LGA    C      29      C      29         26.370
LGA    F      30      F      30         21.635
LGA    G      31      G      31         20.902
LGA    A      32      A      32         16.758
LGA    R      33      R      33         13.173
LGA    L      34      L      34         11.049
LGA    V      35      V      35         12.652
LGA    Q      36      Q      36         10.958
LGA    E      37      E      37         13.312
LGA    G      38      G      38         19.017
LGA    N      39      N      39         18.239
LGA    R      40      R      40         14.252
LGA    L      41      L      41         13.008
LGA    H      42      H      42         12.960
LGA    Y      43      Y      43          9.018
LGA    L      44      L      44          8.602
LGA    A      45      A      45          8.101
LGA    D      46      D      46          8.465
LGA    R      47      R      47          9.024
LGA    A      48      A      48          5.941
LGA    G      49      G      49          3.301
LGA    I      50      I      50          2.845
LGA    R      51      R      51          5.886
LGA    G      52      G      52          3.617
LGA    L      53      L      53          2.891
LGA    F      54      F      54          3.954
LGA    S      55      S      55          5.662
LGA    D      56      D      56          2.015
LGA    A      57      A      57          2.830
LGA    D      58      D      58          2.332
LGA    A      59      A      59          0.974
LGA    Y      60      Y      60          0.920
LGA    H      61      H      61          0.790
LGA    L      62      L      62          2.327
LGA    D      63      D      63          2.687
LGA    Q      64      Q      64          2.720
LGA    A      65      A      65          3.444
LGA    F      66      F      66          3.897
LGA    P      67      P      67          3.525
LGA    L      68      L      68          2.498
LGA    L      69      L      69          2.262
LGA    M      70      M      70          2.101
LGA    K      71      K      71          1.594
LGA    Q      72      Q      72          0.472
LGA    L      73      L      73          0.562
LGA    E      74      E      74          0.864
LGA    L      75      L      75          1.353
LGA    M      76      M      76          1.531
LGA    L      77      L      77          1.351
LGA    T      78      T      78          2.313
LGA    S      79      S      79          5.225
LGA    G      80      G      80          2.513
LGA    E      81      E      81          8.358
LGA    L      82      L      82         10.187
LGA    N      83      N      83         11.321
LGA    P      84      P      84         10.763
LGA    R      85      R      85         12.411
LGA    H      86      H      86         17.178
LGA    Q      87      Q      87         18.144
LGA    H      88      H      88         19.131
LGA    T      89      T      89         22.415
LGA    V      90      V      90         22.993
LGA    T      91      T      91         24.205
LGA    L      92      L      92         23.812
LGA    Y      93      Y      93         24.290
LGA    A      94      A      94         21.813
LGA    K      95      K      95         24.318
LGA    G      96      G      96         25.122
LGA    L      97      L      97         20.091
LGA    T      98      T      98         21.570
LGA    C      99      C      99         22.094
LGA    K     100      K     100         26.873
LGA    A     101      A     101         26.293
LGA    D     102      D     102         28.504
LGA    T     103      T     103         27.883
LGA    L     104      L     104         29.593
LGA    S     105      S     105         29.808
LGA    S     106      S     106         23.999
LGA    C     107      C     107         22.219
LGA    D     108      D     108         18.447
LGA    Y     109      Y     109         18.474
LGA    V     110      V     110         15.544
LGA    Y     111      Y     111         13.001
LGA    L     112      L     112         10.355
LGA    A     113      A     113         13.056
LGA    V     114      V     114         11.154
LGA    Y     115      Y     115         14.308
LGA    P     116      P     116         19.809
LGA    T     117      T     117         23.485
LGA    P     118      P     118         26.952
LGA    E     119      E     119         32.088
LGA    M     120      M     120         36.856
LGA    K     121      K     121         42.416
LGA    N     122      N     122         45.657

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  107    4.0     29    2.41    25.000    21.767     1.157

LGA_LOCAL      RMSD =  2.407  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.275  Number of atoms =  107 
Std_ALL_ATOMS  RMSD = 14.645  (standard rmsd on all 107 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.409018 * X  +  -0.865371 * Y  +  -0.289547 * Z  +  55.526905
  Y_new =  -0.259787 * X  +  -0.193746 * Y  +   0.946030 * Z  +  18.168221
  Z_new =  -0.874765 * X  +   0.462164 * Y  +  -0.145566 * Z  +  46.089733 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.875927   -1.265666  [ DEG:   107.4827    -72.5173 ]
  Theta =   1.064951    2.076641  [ DEG:    61.0172    118.9828 ]
  Phi   =  -2.575729    0.565864  [ DEG:  -147.5784     32.4216 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS393_2                                  
REMARK     2: T0304.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS393_2.T0304.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  107   4.0   29   2.41  21.767    14.65
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS393_2
PFRMAT TS
TARGET T0304
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      75.094  28.204  37.649  1.00 25.00           C
ATOM      2  CA  SER     2      75.885  26.616  40.981  1.00 25.00           C
ATOM      3  CA  ASP     3      75.017  22.988  41.634  1.00 25.00           C
ATOM      4  CA  THR     4      75.742  21.033  38.455  1.00 25.00           C
ATOM      5  CA  LEU     5      74.010  17.673  37.935  1.00 25.00           C
ATOM      6  CA  PRO     6      72.727  15.880  34.858  1.00 25.00           C
ATOM      7  CA  GLY     7      75.546  13.334  35.050  1.00 25.00           C
ATOM      8  CA  THR     8      74.630  12.687  38.648  1.00 25.00           C
ATOM      9  CA  THR     9      73.396  10.086  41.108  1.00 25.00           C
ATOM     10  CA  LEU    10      73.293   8.423  44.496  1.00 25.00           C
ATOM     11  CA  PRO    11      75.121   5.266  45.692  1.00 25.00           C
ATOM     12  CA  ASP    12      77.027   2.161  44.422  1.00 25.00           C
ATOM     13  CA  ASP    13      76.582  -0.525  47.136  1.00 25.00           C
ATOM     14  CA  ASN    14      76.283   2.364  49.637  1.00 25.00           C
ATOM     15  CA  HIS    15      80.024   2.695  49.184  1.00 25.00           C
ATOM     16  CA  ASP    16      79.957   5.185  52.067  1.00 25.00           C
ATOM     17  CA  ARG    17      81.258   7.838  54.501  1.00 25.00           C
ATOM     18  CA  PRO    18      77.664   9.045  54.732  1.00 25.00           C
ATOM     19  CA  TRP    19      75.035  10.426  57.167  1.00 25.00           C
ATOM     20  CA  TRP    20      74.373  14.084  56.297  1.00 25.00           C
ATOM     21  CA  GLY    21      73.935  16.961  58.743  1.00 25.00           C
ATOM     22  CA  LEU    22      71.178  18.056  56.437  1.00 25.00           C
ATOM     23  CA  PRO    23      68.301  18.223  58.862  1.00 25.00           C
ATOM     24  CA  CYS    24      65.424  18.986  56.491  1.00 25.00           C
ATOM     25  CA  THR    25      63.495  16.372  58.472  1.00 25.00           C
ATOM     26  CA  VAL    26      60.358  14.920  57.003  1.00 25.00           C
ATOM     27  CA  THR    27      59.063  18.538  57.170  1.00 25.00           C
ATOM     28  CA  PRO    28      60.157  19.103  53.543  1.00 25.00           C
ATOM     29  CA  CYS    29      60.685  21.665  50.721  1.00 25.00           C
ATOM     30  CA  PHE    30      61.282  21.810  46.995  1.00 25.00           C
ATOM     31  CA  GLY    31      61.153  18.183  45.773  1.00 25.00           C
ATOM     32  CA  ALA    32      58.739  17.287  48.608  1.00 25.00           C
ATOM     33  CA  ARG    33      56.519  20.271  47.693  1.00 25.00           C
ATOM     34  CA  LEU    34      56.517  19.175  44.023  1.00 25.00           C
ATOM     35  CA  VAL    35      55.551  15.618  45.059  1.00 25.00           C
ATOM     36  CA  GLN    36      52.701  16.994  47.217  1.00 25.00           C
ATOM     37  CA  GLU    37      51.470  19.119  44.278  1.00 25.00           C
ATOM     38  CA  GLY    38      51.560  16.050  41.989  1.00 25.00           C
ATOM     39  CA  ASN    39      49.574  14.036  44.570  1.00 25.00           C
ATOM     40  CA  ARG    40      46.986  16.850  44.810  1.00 25.00           C
ATOM     41  CA  LEU    41      46.685  16.933  40.993  1.00 25.00           C
ATOM     42  CA  HIS    42      46.189  13.135  40.926  1.00 25.00           C
ATOM     43  CA  TYR    43      43.476  13.417  43.614  1.00 25.00           C
ATOM     44  CA  LEU    44      41.727  16.162  41.594  1.00 25.00           C
ATOM     45  CA  ALA    45      41.861  13.971  38.456  1.00 25.00           C
ATOM     46  CA  ASP    46      40.377  11.033  40.412  1.00 25.00           C
ATOM     47  CA  ARG    47      37.571  13.289  41.719  1.00 25.00           C
ATOM     48  CA  ALA    48      36.604  17.015  42.002  1.00 25.00           C
ATOM     49  CA  GLY    49      38.012  17.768  38.515  1.00 25.00           C
ATOM     50  CA  ILE    50      41.206  19.670  38.036  1.00 25.00           C
ATOM     51  CA  ARG    51      41.096  21.721  34.782  1.00 25.00           C
ATOM     52  CA  GLY    52      38.442  19.523  33.174  1.00 25.00           C
ATOM     53  CA  LEU    53      39.958  17.764  30.161  1.00 25.00           C
ATOM     54  CA  PHE    54      41.690  15.365  32.460  1.00 25.00           C
ATOM     55  CA  SER    55      42.525  12.853  29.754  1.00 25.00           C
ATOM     56  CA  ASP    56      45.109  12.604  26.938  1.00 25.00           C
ATOM     57  CA  ALA    57      48.228  14.468  25.728  1.00 25.00           C
ATOM     58  CA  ASP    58      46.471  17.824  26.293  1.00 25.00           C
ATOM     59  CA  ALA    59      45.473  16.734  29.826  1.00 25.00           C
ATOM     60  CA  TYR    60      49.087  15.698  30.555  1.00 25.00           C
ATOM     61  CA  HIS    61      50.340  19.088  29.289  1.00 25.00           C
ATOM     62  CA  LEU    62      47.800  20.888  31.520  1.00 25.00           C
ATOM     63  CA  ASP    63      48.939  18.813  34.531  1.00 25.00           C
ATOM     64  CA  GLN    64      52.593  19.674  33.774  1.00 25.00           C
ATOM     65  CA  ALA    65      51.695  23.391  33.546  1.00 25.00           C
ATOM     66  CA  PHE    66      49.863  23.179  36.903  1.00 25.00           C
ATOM     67  CA  PRO    67      52.907  21.477  38.486  1.00 25.00           C
ATOM     68  CA  LEU    68      55.192  24.220  37.099  1.00 25.00           C
ATOM     69  CA  LEU    69      52.865  26.910  38.518  1.00 25.00           C
ATOM     70  CA  MET    70      52.898  25.173  41.932  1.00 25.00           C
ATOM     71  CA  LYS    71      56.724  25.027  41.848  1.00 25.00           C
ATOM     72  CA  GLN    72      56.872  28.755  40.984  1.00 25.00           C
ATOM     73  CA  LEU    73      54.504  29.547  43.888  1.00 25.00           C
ATOM     74  CA  GLU    74      56.688  27.485  46.263  1.00 25.00           C
ATOM     75  CA  LEU    75      59.807  29.349  45.055  1.00 25.00           C
ATOM     76  CA  MET    76      58.050  32.705  45.619  1.00 25.00           C
ATOM     77  CA  LEU    77      57.051  31.615  49.152  1.00 25.00           C
ATOM     78  CA  THR    78      60.665  30.579  49.881  1.00 25.00           C
ATOM     79  CA  SER    79      60.456  33.395  52.455  1.00 25.00           C
ATOM     80  CA  GLY    80      58.353  36.324  51.077  1.00 25.00           C
ATOM     81  CA  GLU    81      56.263  36.085  54.257  1.00 25.00           C
ATOM     82  CA  LEU    82      56.150  33.229  56.770  1.00 25.00           C
ATOM     83  CA  ASN    83      57.216  33.832  60.349  1.00 25.00           C
ATOM     84  CA  PRO    84      54.331  33.370  62.807  1.00 25.00           C
ATOM     85  CA  ARG    85      52.626  30.194  63.976  1.00 25.00           C
ATOM     86  CA  HIS    86      55.360  28.308  62.086  1.00 25.00           C
ATOM     87  CA  GLN    87      53.757  26.554  59.056  1.00 25.00           C
ATOM     88  CA  HIS    88      52.269  23.966  56.642  1.00 25.00           C
ATOM     89  CA  THR    89      52.618  20.168  56.628  1.00 25.00           C
ATOM     90  CA  VAL    90      52.180  17.075  54.389  1.00 25.00           C
ATOM     91  CA  THR    91      55.008  15.869  52.150  1.00 25.00           C
ATOM     92  CA  LEU    92      55.978  12.839  50.051  1.00 25.00           C
ATOM     93  CA  TYR    93      55.496  10.597  47.053  1.00 25.00           C
ATOM     94  CA  ALA    94      51.994  10.128  45.758  1.00 25.00           C
ATOM     95  CA  LYS    95      53.457   6.994  44.209  1.00 25.00           C
ATOM     96  CA  GLY    96      56.504   7.769  42.126  1.00 25.00           C
ATOM     97  CA  LEU    97      54.812  11.119  41.298  1.00 25.00           C
ATOM     98  CA  THR    98      58.136  13.035  41.389  1.00 25.00           C
ATOM     99  CA  CYS    99      59.661  12.466  44.827  1.00 25.00           C
ATOM    100  CA  LYS   100      60.954  10.880  48.068  1.00 25.00           C
ATOM    101  CA  ALA   101      58.514   8.469  49.728  1.00 25.00           C
ATOM    102  CA  ASP   102      55.427   6.323  50.075  1.00 25.00           C
ATOM    103  CA  THR   103      51.842   4.952  50.421  1.00 25.00           C
ATOM    104  CA  LEU   104      48.140   5.012  51.264  1.00 25.00           C
ATOM    105  CA  SER   105      46.311   5.773  54.517  1.00 25.00           C
ATOM    106  CA  SER   106      44.276   8.125  52.240  1.00 25.00           C
ATOM    107  CA  CYS   107      46.582  10.371  50.200  1.00 25.00           C
ATOM    108  CA  ASP   108      49.011   9.835  53.055  1.00 25.00           C
ATOM    109  CA  TYR   109      51.756   9.743  50.442  1.00 25.00           C
ATOM    110  CA  VAL   110      50.725  13.319  49.717  1.00 25.00           C
ATOM    111  CA  TYR   111      48.853  16.478  50.621  1.00 25.00           C
ATOM    112  CA  LEU   112      48.668  19.875  48.895  1.00 25.00           C
ATOM    113  CA  ALA   113      51.485  22.252  48.076  1.00 25.00           C
ATOM    114  CA  VAL   114      49.209  24.774  46.259  1.00 25.00           C
ATOM    115  CA  TYR   115      47.199  27.986  46.176  1.00 25.00           C
ATOM    116  CA  PRO   116      44.875  26.392  48.787  1.00 25.00           C
ATOM    117  CA  THR   117      41.946  26.610  51.268  1.00 25.00           C
ATOM    118  CA  PRO   118      39.111  28.201  53.180  1.00 25.00           C
ATOM    119  CA  GLU   119      36.148  30.347  54.318  1.00 25.00           C
ATOM    120  CA  MET   120      34.742  28.505  57.293  1.00 25.00           C
ATOM    121  CA  LYS   121      35.042  26.548  60.521  1.00 25.00           C
ATOM    122  CA  ASN   122      38.075  24.390  61.345  1.00 25.00           C
TER
END
