
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  107 , name T0304TS393_3
# Molecule2: number of CA atoms  107 (  848),  selected  107 , name T0304.pdb
# PARAMETERS: T0304TS393_3.T0304.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39        51 - 89          4.95    18.33
  LONGEST_CONTINUOUS_SEGMENT:    39        52 - 90          4.83    17.98
  LCS_AVERAGE:     26.99

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        56 - 78          1.99    19.56
  LCS_AVERAGE:     11.01

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        63 - 78          0.86    19.72
  LCS_AVERAGE:      6.08

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  107
LCS_GDT     D      16     D      16      4   12   16     3    4    7    8   11   12   13   14   16   17   17   19   23   28   28   32   36   40   42   44 
LCS_GDT     R      17     R      17      5   12   16     3    4    7    8   11   12   12   12   12   13   13   19   20   28   28   32   36   40   42   44 
LCS_GDT     P      18     P      18      6   12   16     3    5    7    8   11   12   12   12   12   13   15   17   17   26   30   32   36   40   42   46 
LCS_GDT     W      19     W      19      6   12   16     3    5    7    8   11   12   12   12   12   14   15   17   17   19   30   32   34   40   43   46 
LCS_GDT     W      20     W      20      6   12   16     3    5    7    8   11   12   12   12   13   14   15   17   17   19   19   21   24   33   38   43 
LCS_GDT     G      21     G      21      6   12   16     3    4    7    8   11   12   12   12   13   14   15   17   17   19   19   21   24   33   38   46 
LCS_GDT     L      22     L      22      6   12   16     3    5    7    8   11   12   12   12   13   14   15   17   17   19   21   25   35   38   44   46 
LCS_GDT     P      23     P      23      6   12   16     3    5    6    8   11   12   12   12   13   14   20   23   28   30   32   37   39   42   44   47 
LCS_GDT     C      24     C      24      5   12   16     3    4    6    8   11   12   12   14   16   18   20   25   28   31   35   37   39   42   44   47 
LCS_GDT     T      25     T      25      4   12   16     3    3    5    8   11   12   12   12   15   18   19   25   26   31   35   37   39   40   44   45 
LCS_GDT     V      26     V      26      4   12   16     3    3    5    8   11   12   12   12   13   14   15   19   24   26   32   37   39   40   44   45 
LCS_GDT     T      27     T      27      4   12   16     3    3    5    8   11   12   12   12   13   14   15   19   21   21   24   27   32   40   44   46 
LCS_GDT     P      28     P      28      4    9   16     3    3    4    8    9   10   11   12   13   14   15   19   21   21   24   26   32   40   44   46 
LCS_GDT     C      29     C      29      3    9   16     3    3    3    7    9   10   11   12   15   19   23   25   28   32   35   38   41   44   48   52 
LCS_GDT     F      30     F      30      3    9   16     3    3    5    8    9   10   12   15   18   20   24   28   31   34   36   40   46   50   52   53 
LCS_GDT     G      31     G      31      3    5   16     3    3    3    4    5    7    9   15   18   25   31   35   36   40   44   47   49   51   52   53 
LCS_GDT     A      32     A      32      3    4   14     3    3    5    6    6    6    6    9   10   13   28   34   41   42   46   47   49   51   52   53 
LCS_GDT     R      33     R      33      3    3   12     3    3    5    6    6   12   19   24   29   33   33   36   41   42   46   47   49   51   52   54 
LCS_GDT     L      34     L      34      3    3   12     3    3    5    7    9   12   16   23   27   30   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     V      35     V      35      3    3   12     3    4    4    5    5    5    6    8   11   14   17   23   27   34   37   42   43   47   52   56 
LCS_GDT     Q      36     Q      36      3    4   15     3    4    4    5    5    5    9   11   14   17   21   22   25   30   32   36   41   45   51   56 
LCS_GDT     E      37     E      37      3    5   15     3    4    4    4    5    5    7    9   11   17   22   24   28   30   33   38   43   44   52   56 
LCS_GDT     G      38     G      38      3    5   15     3    3    4    4    5    5    6    8   10   11   12   14   21   24   27   29   31   34   41   44 
LCS_GDT     N      39     N      39      3    5   15     3    4    4    4    5    5    6    7    8   11   12   13   21   22   27   29   33   36   41   44 
LCS_GDT     R      40     R      40      3    5   15     3    4    4    4    5    5    7    9   11   19   21   22   23   27   29   33   36   41   44   46 
LCS_GDT     L      41     L      41      3    5   15     0    4    4    4    5    9   12   15   17   19   21   24   27   34   39   41   43   47   52   55 
LCS_GDT     H      42     H      42      3    3   37     0    3    4    4    5    8   12   15   17   19   21   22   28   30   32   38   43   44   50   54 
LCS_GDT     Y      43     Y      43      3    3   37     1    3    4    4    4    7   10   15   16   20   25   29   35   36   39   41   44   49   52   56 
LCS_GDT     L      44     L      44      5    6   37     5    5    5    6    6   11   17   21   25   27   29   33   35   36   39   41   44   49   52   56 
LCS_GDT     A      45     A      45      5    6   37     5    5    5    6    6    8    9   15   17   24   27   32   35   36   39   41   44   49   52   56 
LCS_GDT     D      46     D      46      5    6   37     5    5    5    6    6    8   11   15   15   18   23   26   35   36   39   41   44   49   52   56 
LCS_GDT     R      47     R      47      5    6   37     5    5    5    6    9   10   17   20   24   27   29   33   35   36   39   41   44   49   52   56 
LCS_GDT     A      48     A      48      5    6   37     5    5    5    9   12   14   17   23   25   27   29   33   35   36   39   41   44   49   52   56 
LCS_GDT     G      49     G      49      3    7   37     3    3    4    6    8   12   19   23   25   27   29   33   35   36   39   41   44   49   52   56 
LCS_GDT     I      50     I      50      3    7   38     3    3    4    6    8   13   19   23   25   27   29   33   35   36   39   42   44   49   52   56 
LCS_GDT     R      51     R      51      3    7   39     3    3    5    6    8    9   14   23   25   27   29   33   35   36   39   41   45   49   52   56 
LCS_GDT     G      52     G      52      4   15   39     3    3    4    6    8   11   21   24   26   28   29   34   38   41   43   47   49   50   52   56 
LCS_GDT     L      53     L      53      4   18   39     3    3    6   13   16   19   24   25   27   28   32   36   39   41   46   47   49   50   52   56 
LCS_GDT     F      54     F      54      4   19   39     3    5   10   16   18   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     S      55     S      55      4   19   39     3    3    5    7   12   13   24   26   29   33   33   36   41   42   46   47   49   51   52   54 
LCS_GDT     D      56     D      56     13   23   39     9   11   12   16   18   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     A      57     A      57     13   23   39     9   11   12   16   18   22   24   25   27   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     D      58     D      58     13   23   39     9   11   12   16   18   22   24   25   28   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     A      59     A      59     13   23   39     9   11   12   17   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     Y      60     Y      60     13   23   39     9   11   12   17   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     H      61     H      61     13   23   39     9   11   12   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     L      62     L      62     13   23   39     9   11   13   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     D      63     D      63     16   23   39     9   11   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     Q      64     Q      64     16   23   39     9   11   12   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     A      65     A      65     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     F      66     F      66     16   23   39    14   15   15   18   20   21   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     P      67     P      67     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     L      68     L      68     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     L      69     L      69     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     M      70     M      70     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     K      71     K      71     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     Q      72     Q      72     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     L      73     L      73     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     E      74     E      74     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     L      75     L      75     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     M      76     M      76     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     L      77     L      77     16   23   39    14   15   15   18   20   22   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     T      78     T      78     16   23   39    14   15   15   18   20   21   24   27   29   33   33   36   41   42   46   47   49   51   52   55 
LCS_GDT     S      79     S      79      3   19   39     3    3    4    7    9   14   20   22   27   29   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     G      80     G      80      3   16   39     3    3    3    4    8   16   20   22   26   28   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     E      81     E      81      3    8   39     3    3    3    5    7    9   11   13   18   21   31   33   39   42   46   47   49   51   52   56 
LCS_GDT     L      82     L      82      6    8   39     3    6    6    7    9   14   20   21   25   28   32   36   41   42   46   47   49   51   52   56 
LCS_GDT     N      83     N      83      6    8   39     3    6    6    7    9   16   20   21   24   30   31   35   39   42   46   47   49   51   52   55 
LCS_GDT     P      84     P      84      6    9   39     3    6    6    7    9   11   13   14   17   21   23   24   34   34   36   42   46   51   52   53 
LCS_GDT     R      85     R      85      6    9   39     3    6    6   10   18   20   22   22   26   30   31   34   37   41   43   47   49   51   52   55 
LCS_GDT     H      86     H      86      6    9   39     3   15   15   17   19   20   22   23   27   30   32   36   39   42   46   47   49   51   52   56 
LCS_GDT     Q      87     Q      87      6    9   39     3    6    6   12   17   18   22   23   27   30   32   36   41   42   46   47   49   51   52   56 
LCS_GDT     H      88     H      88      4    9   39     3    6    7   11   15   20   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     T      89     T      89      5    9   39     3    6    7   11   15   18   23   26   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     V      90     V      90      5    9   39     3    4    5    8   10   12   14   19   22   33   33   35   41   42   45   47   49   51   52   55 
LCS_GDT     T      91     T      91      5    9   36     3    4    6    8    9   11   14   16   17   18   23   29   33   37   40   41   41   46   52   53 
LCS_GDT     L      92     L      92      5    9   26     3    4    6    8   10   12   14   16   17   18   23   25   28   30   32   35   39   42   45   49 
LCS_GDT     Y      93     Y      93      5    8   26     3    4    6    8   10   12   14   16   17   18   23   25   28   30   31   35   39   40   44   49 
LCS_GDT     A      94     A      94      5   10   26     3    4    6    8    9   12   14   16   17   18   23   25   28   30   35   37   39   41   47   53 
LCS_GDT     K      95     K      95      5   10   26     3    3    6    8   10   12   14   16   17   18   23   25   28   31   35   37   39   40   45   53 
LCS_GDT     G      96     G      96      5   10   26     3    4    6    8   10   12   14   16   17   18   23   25   28   30   32   37   39   40   45   49 
LCS_GDT     L      97     L      97      5   10   26     3    4    5    8   10   12   14   16   18   20   24   29   34   37   43   47   49   51   52   53 
LCS_GDT     T      98     T      98      5   10   26     3    4    5    8    9   12   14   16   22   26   32   35   41   42   46   47   49   51   52   54 
LCS_GDT     C      99     C      99      5   10   26     3    4    5    6   11   14   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     K     100     K     100      4   10   26     2    3    5    8   10   13   15   27   29   33   33   36   41   42   46   47   49   51   52   54 
LCS_GDT     A     101     A     101      4   10   26     3    3    6    8   10   13   15   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     D     102     D     102      4   10   24     3    4    6    8   10   12   15   18   23   26   33   35   38   42   46   47   49   51   52   56 
LCS_GDT     T     103     T     103      4   10   24     3    4    6    8   10   12   14   16   17   18   23   25   27   31   35   39   43   47   51   56 
LCS_GDT     L     104     L     104      4    5   24     3    4    5    6    6    6    9   12   14   17   21   25   26   31   35   37   43   46   51   54 
LCS_GDT     S     105     S     105      4    5   24     3    4    5    6    6    7   12   14   16   18   20   25   26   31   35   37   40   43   48   54 
LCS_GDT     S     106     S     106      3    5   24     3    4    4    4    5    9   12   15   18   23   26   29   32   36   39   41   44   49   52   56 
LCS_GDT     C     107     C     107      3    5   24     3    4    5    6    6    6   12   15   16   19   21   27   32   36   39   41   43   49   52   56 
LCS_GDT     D     108     D     108      3    5   24     3    3    3    4    5    9   12   15   17   19   23   33   35   36   39   41   44   49   52   55 
LCS_GDT     Y     109     Y     109      3    5   24     3    3    3    4    6   10   12   15   17   19   23   33   35   36   39   41   44   49   52   56 
LCS_GDT     V     110     V     110      3    7   24     3    4    5    6    7   10   12   14   22   27   29   33   35   36   39   43   45   49   52   56 
LCS_GDT     Y     111     Y     111      4    9   24     3    4    5    6    9   11   12   22   27   30   32   36   39   41   46   47   49   51   52   56 
LCS_GDT     L     112     L     112      4    9   24     3    4    5    6   12   18   24   27   29   33   33   36   41   42   46   47   49   51   52   56 
LCS_GDT     A     113     A     113      4    9   24     2    4    5    6    9   11   13   18   27   30   33   35   41   42   46   47   49   51   52   54 
LCS_GDT     V     114     V     114      4    9   24     3    4    5    6    9   11   12   15   18   21   24   29   34   37   42   46   48   51   52   53 
LCS_GDT     Y     115     Y     115      3    9   24     3    4    5    6    9   11   12   14   17   19   23   24   28   31   35   37   39   42   44   47 
LCS_GDT     P     116     P     116      3    9   24     3    3    4    7    9   11   12   15   17   19   23   25   28   31   35   37   39   40   42   44 
LCS_GDT     T     117     T     117      4    9   24     0    3    4    6    9   11   12   15   17   19   23   25   27   31   35   37   39   40   42   43 
LCS_GDT     P     118     P     118      4    9   24     3    4    5    6    9   11   12   15   17   19   23   25   27   31   35   37   39   40   42   43 
LCS_GDT     E     119     E     119      4    9   24     3    4    5    6    9   11   12   15   17   19   23   25   27   31   35   37   39   40   42   43 
LCS_GDT     M     120     M     120      4    7   24     3    4    5    5    6    9   12   15   17   19   23   25   27   31   35   37   39   40   42   43 
LCS_GDT     K     121     K     121      4    7   24     0    4    5    5    6    9   12   15   17   19   23   25   27   31   35   37   39   40   42   43 
LCS_GDT     N     122     N     122      3    6   24     0    3    5    5    6    8   12   15   17   19   20   25   26   31   35   37   39   40   42   43 
LCS_AVERAGE  LCS_A:  14.69  (   6.08   11.01   26.99 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     15     18     20     22     24     27     29     33     33     36     41     42     46     47     49     51     52     56 
GDT PERCENT_CA  13.08  14.02  14.02  16.82  18.69  20.56  22.43  25.23  27.10  30.84  30.84  33.64  38.32  39.25  42.99  43.93  45.79  47.66  48.60  52.34
GDT RMS_LOCAL    0.17   0.37   0.37   1.22   1.52   2.00   2.12   2.72   2.85   3.25   3.25   3.81   4.25   4.33   4.85   4.90   5.21   5.51   5.78   7.28
GDT RMS_ALL_CA  20.13  20.05  20.05  19.87  19.47  18.85  18.88  17.62  17.56  17.63  17.57  17.65  17.53  17.55  17.60  17.58  17.66  17.38  17.30  19.71

#      Molecule1      Molecule2       DISTANCE
LGA    D      16      D      16         32.187
LGA    R      17      R      17         29.319
LGA    P      18      P      18         25.028
LGA    W      19      W      19         22.364
LGA    W      20      W      20         19.900
LGA    G      21      G      21         19.792
LGA    L      22      L      22         18.288
LGA    P      23      P      23         18.343
LGA    C      24      C      24         18.413
LGA    T      25      T      25         22.430
LGA    V      26      V      26         21.059
LGA    T      27      T      27         20.386
LGA    P      28      P      28         19.149
LGA    C      29      C      29         15.175
LGA    F      30      F      30         12.884
LGA    G      31      G      31          7.436
LGA    A      32      A      32          6.931
LGA    R      33      R      33          6.281
LGA    L      34      L      34          7.466
LGA    V      35      V      35         13.999
LGA    Q      36      Q      36         18.220
LGA    E      37      E      37         19.952
LGA    G      38      G      38         22.716
LGA    N      39      N      39         24.858
LGA    R      40      R      40         23.422
LGA    L      41      L      41         18.354
LGA    H      42      H      42         20.417
LGA    Y      43      Y      43         20.719
LGA    L      44      L      44         22.410
LGA    A      45      A      45         20.868
LGA    D      46      D      46         24.482
LGA    R      47      R      47         25.273
LGA    A      48      A      48         22.702
LGA    G      49      G      49         20.823
LGA    I      50      I      50         16.503
LGA    R      51      R      51         18.181
LGA    G      52      G      52         13.096
LGA    L      53      L      53          9.047
LGA    F      54      F      54          2.959
LGA    S      55      S      55          4.073
LGA    D      56      D      56          2.844
LGA    A      57      A      57          6.061
LGA    D      58      D      58          5.643
LGA    A      59      A      59          2.361
LGA    Y      60      Y      60          1.930
LGA    H      61      H      61          3.092
LGA    L      62      L      62          3.113
LGA    D      63      D      63          2.786
LGA    Q      64      Q      64          2.213
LGA    A      65      A      65          0.918
LGA    F      66      F      66          3.878
LGA    P      67      P      67          3.936
LGA    L      68      L      68          1.373
LGA    L      69      L      69          2.013
LGA    M      70      M      70          3.156
LGA    K      71      K      71          2.143
LGA    Q      72      Q      72          1.656
LGA    L      73      L      73          2.187
LGA    E      74      E      74          1.442
LGA    L      75      L      75          2.359
LGA    M      76      M      76          3.064
LGA    L      77      L      77          1.667
LGA    T      78      T      78          1.720
LGA    S      79      S      79          8.393
LGA    G      80      G      80          8.067
LGA    E      81      E      81          9.228
LGA    L      82      L      82          7.257
LGA    N      83      N      83          8.969
LGA    P      84      P      84         12.208
LGA    R      85      R      85         12.148
LGA    H      86      H      86         10.649
LGA    Q      87      Q      87          8.441
LGA    H      88      H      88          3.190
LGA    T      89      T      89          4.167
LGA    V      90      V      90          4.567
LGA    T      91      T      91         10.396
LGA    L      92      L      92         13.146
LGA    Y      93      Y      93         15.990
LGA    A      94      A      94         16.017
LGA    K      95      K      95         18.539
LGA    G      96      G      96         16.641
LGA    L      97      L      97         10.339
LGA    T      98      T      98          6.616
LGA    C      99      C      99          3.169
LGA    K     100      K     100          3.745
LGA    A     101      A     101          3.934
LGA    D     102      D     102          6.887
LGA    T     103      T     103         13.321
LGA    L     104      L     104         12.956
LGA    S     105      S     105         19.282
LGA    S     106      S     106         19.841
LGA    C     107      C     107         20.228
LGA    D     108      D     108         20.476
LGA    Y     109      Y     109         17.560
LGA    V     110      V     110         11.440
LGA    Y     111      Y     111          8.552
LGA    L     112      L     112          3.740
LGA    A     113      A     113          5.750
LGA    V     114      V     114          9.802
LGA    Y     115      Y     115         16.498
LGA    P     116      P     116         23.413
LGA    T     117      T     117         29.247
LGA    P     118      P     118         35.462
LGA    E     119      E     119         42.517
LGA    M     120      M     120         47.413
LGA    K     121      K     121         51.750
LGA    N     122      N     122         55.183

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  107    4.0     27    2.72    25.000    21.400     0.958

LGA_LOCAL      RMSD =  2.717  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.557  Number of atoms =  107 
Std_ALL_ATOMS  RMSD = 17.062  (standard rmsd on all 107 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.329945 * X  +   0.175606 * Y  +   0.927523 * Z  +  43.523090
  Y_new =   0.075532 * X  +   0.974484 * Y  +  -0.211366 * Z  +  26.520649
  Z_new =  -0.940974 * X  +   0.139797 * Y  +   0.308262 * Z  +  44.346970 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.425760   -2.715832  [ DEG:    24.3943   -155.6057 ]
  Theta =   1.225495    1.916097  [ DEG:    70.2157    109.7843 ]
  Phi   =   0.225045   -2.916547  [ DEG:    12.8942   -167.1059 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS393_3                                  
REMARK     2: T0304.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS393_3.T0304.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  107   4.0   27   2.72  21.400    17.06
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS393_3
PFRMAT TS
TARGET T0304
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      27.573   8.685  50.870  1.00 25.00           C
ATOM      2  CA  SER     2      28.707  12.338  50.918  1.00 25.00           C
ATOM      3  CA  ASP     3      28.018  15.581  52.856  1.00 25.00           C
ATOM      4  CA  THR     4      25.107  17.057  54.836  1.00 25.00           C
ATOM      5  CA  LEU     5      23.247  20.091  53.500  1.00 25.00           C
ATOM      6  CA  PRO     6      23.238  20.378  49.753  1.00 25.00           C
ATOM      7  CA  GLY     7      21.346  23.075  47.928  1.00 25.00           C
ATOM      8  CA  THR     8      21.173  25.897  50.475  1.00 25.00           C
ATOM      9  CA  THR     9      24.267  28.082  50.121  1.00 25.00           C
ATOM     10  CA  LEU    10      23.873  30.670  52.815  1.00 25.00           C
ATOM     11  CA  PRO    11      22.497  34.256  52.997  1.00 25.00           C
ATOM     12  CA  ASP    12      19.946  36.902  54.074  1.00 25.00           C
ATOM     13  CA  ASP    13      20.754  36.819  57.835  1.00 25.00           C
ATOM     14  CA  ASN    14      23.092  35.588  60.532  1.00 25.00           C
ATOM     15  CA  HIS    15      22.538  39.111  62.011  1.00 25.00           C
ATOM     16  CA  ASP    16      25.811  38.627  63.953  1.00 25.00           C
ATOM     17  CA  ARG    17      26.133  35.122  65.237  1.00 25.00           C
ATOM     18  CA  PRO    18      28.898  32.740  66.453  1.00 25.00           C
ATOM     19  CA  TRP    19      31.692  31.098  64.464  1.00 25.00           C
ATOM     20  CA  TRP    20      33.703  27.900  64.923  1.00 25.00           C
ATOM     21  CA  GLY    21      36.986  28.374  63.181  1.00 25.00           C
ATOM     22  CA  LEU    22      40.159  27.072  61.578  1.00 25.00           C
ATOM     23  CA  PRO    23      40.596  30.641  60.258  1.00 25.00           C
ATOM     24  CA  CYS    24      40.760  30.014  56.492  1.00 25.00           C
ATOM     25  CA  THR    25      42.269  33.559  56.240  1.00 25.00           C
ATOM     26  CA  VAL    26      42.023  33.873  52.449  1.00 25.00           C
ATOM     27  CA  THR    27      39.232  32.709  50.138  1.00 25.00           C
ATOM     28  CA  PRO    28      41.225  29.641  49.180  1.00 25.00           C
ATOM     29  CA  CYS    29      42.136  25.971  49.711  1.00 25.00           C
ATOM     30  CA  PHE    30      39.263  23.530  50.094  1.00 25.00           C
ATOM     31  CA  GLY    31      39.582  20.394  47.919  1.00 25.00           C
ATOM     32  CA  ALA    32      36.574  21.507  45.827  1.00 25.00           C
ATOM     33  CA  ARG    33      38.134  24.976  45.385  1.00 25.00           C
ATOM     34  CA  LEU    34      41.436  23.377  44.285  1.00 25.00           C
ATOM     35  CA  VAL    35      39.565  21.183  41.766  1.00 25.00           C
ATOM     36  CA  GLN    36      37.749  24.264  40.396  1.00 25.00           C
ATOM     37  CA  GLU    37      41.086  26.108  40.048  1.00 25.00           C
ATOM     38  CA  GLY    38      42.579  23.107  38.196  1.00 25.00           C
ATOM     39  CA  ASN    39      39.558  23.026  35.843  1.00 25.00           C
ATOM     40  CA  ARG    40      39.951  26.774  35.169  1.00 25.00           C
ATOM     41  CA  LEU    41      43.671  26.274  34.412  1.00 25.00           C
ATOM     42  CA  HIS    42      42.822  23.418  32.005  1.00 25.00           C
ATOM     43  CA  TYR    43      40.233  25.631  30.254  1.00 25.00           C
ATOM     44  CA  LEU    44      42.817  28.438  29.925  1.00 25.00           C
ATOM     45  CA  ALA    45      45.346  25.970  28.446  1.00 25.00           C
ATOM     46  CA  ASP    46      42.719  24.740  25.946  1.00 25.00           C
ATOM     47  CA  ARG    47      41.938  28.354  24.950  1.00 25.00           C
ATOM     48  CA  ALA    48      45.643  29.247  24.681  1.00 25.00           C
ATOM     49  CA  GLY    49      47.308  25.877  23.839  1.00 25.00           C
ATOM     50  CA  ILE    50      48.917  22.875  25.608  1.00 25.00           C
ATOM     51  CA  ARG    51      47.632  20.924  22.593  1.00 25.00           C
ATOM     52  CA  GLY    52      43.940  20.156  23.327  1.00 25.00           C
ATOM     53  CA  LEU    53      42.911  16.494  23.385  1.00 25.00           C
ATOM     54  CA  PHE    54      42.238  17.071  27.092  1.00 25.00           C
ATOM     55  CA  SER    55      42.486  13.334  27.566  1.00 25.00           C
ATOM     56  CA  ASP    56      45.974  12.042  26.999  1.00 25.00           C
ATOM     57  CA  ALA    57      49.794  11.985  27.259  1.00 25.00           C
ATOM     58  CA  ASP    58      49.949  15.644  26.135  1.00 25.00           C
ATOM     59  CA  ALA    59      47.320  16.585  28.756  1.00 25.00           C
ATOM     60  CA  TYR    60      49.324  14.756  31.458  1.00 25.00           C
ATOM     61  CA  HIS    61      52.502  16.605  30.389  1.00 25.00           C
ATOM     62  CA  LEU    62      50.640  19.948  30.547  1.00 25.00           C
ATOM     63  CA  ASP    63      49.353  19.094  34.052  1.00 25.00           C
ATOM     64  CA  GLN    64      52.908  18.203  35.166  1.00 25.00           C
ATOM     65  CA  ALA    65      54.205  21.523  33.764  1.00 25.00           C
ATOM     66  CA  PHE    66      51.446  23.416  35.627  1.00 25.00           C
ATOM     67  CA  PRO    67      52.353  21.595  38.872  1.00 25.00           C
ATOM     68  CA  LEU    68      56.042  22.490  38.371  1.00 25.00           C
ATOM     69  CA  LEU    69      55.099  26.156  37.790  1.00 25.00           C
ATOM     70  CA  MET    70      52.982  26.143  40.982  1.00 25.00           C
ATOM     71  CA  LYS    71      55.906  24.637  42.945  1.00 25.00           C
ATOM     72  CA  GLN    72      58.253  27.329  41.562  1.00 25.00           C
ATOM     73  CA  LEU    73      55.760  30.056  42.569  1.00 25.00           C
ATOM     74  CA  GLU    74      55.524  28.573  46.092  1.00 25.00           C
ATOM     75  CA  LEU    75      59.345  28.516  46.351  1.00 25.00           C
ATOM     76  CA  MET    76      59.499  32.174  45.227  1.00 25.00           C
ATOM     77  CA  LEU    77      56.870  33.116  47.849  1.00 25.00           C
ATOM     78  CA  THR    78      58.875  31.287  50.551  1.00 25.00           C
ATOM     79  CA  SER    79      57.605  30.731  54.079  1.00 25.00           C
ATOM     80  CA  GLY    80      60.557  32.886  55.003  1.00 25.00           C
ATOM     81  CA  GLU    81      59.056  36.337  54.222  1.00 25.00           C
ATOM     82  CA  LEU    82      57.999  37.923  50.892  1.00 25.00           C
ATOM     83  CA  ASN    83      58.234  41.717  51.012  1.00 25.00           C
ATOM     84  CA  PRO    84      56.160  43.908  53.376  1.00 25.00           C
ATOM     85  CA  ARG    85      54.499  45.744  50.480  1.00 25.00           C
ATOM     86  CA  HIS    86      54.920  43.600  47.401  1.00 25.00           C
ATOM     87  CA  GLN    87      51.461  41.934  47.725  1.00 25.00           C
ATOM     88  CA  HIS    88      48.738  39.337  47.204  1.00 25.00           C
ATOM     89  CA  THR    89      49.593  37.327  44.085  1.00 25.00           C
ATOM     90  CA  VAL    90      46.581  34.994  44.669  1.00 25.00           C
ATOM     91  CA  THR    91      46.138  32.041  47.038  1.00 25.00           C
ATOM     92  CA  LEU    92      45.925  28.274  47.361  1.00 25.00           C
ATOM     93  CA  TYR    93      48.270  25.301  47.508  1.00 25.00           C
ATOM     94  CA  ALA    94      50.549  22.434  46.528  1.00 25.00           C
ATOM     95  CA  LYS    95      50.737  18.908  45.173  1.00 25.00           C
ATOM     96  CA  GLY    96      48.879  19.201  41.856  1.00 25.00           C
ATOM     97  CA  LEU    97      47.384  21.815  39.578  1.00 25.00           C
ATOM     98  CA  THR    98      46.869  25.266  37.944  1.00 25.00           C
ATOM     99  CA  CYS    99      45.234  28.605  38.683  1.00 25.00           C
ATOM    100  CA  LYS   100      42.036  30.692  39.105  1.00 25.00           C
ATOM    101  CA  ALA   101      42.951  32.060  42.579  1.00 25.00           C
ATOM    102  CA  ASP   102      40.767  34.943  41.509  1.00 25.00           C
ATOM    103  CA  THR   103      37.378  36.175  40.216  1.00 25.00           C
ATOM    104  CA  LEU   104      37.044  33.072  38.098  1.00 25.00           C
ATOM    105  CA  SER   105      37.777  34.689  34.754  1.00 25.00           C
ATOM    106  CA  SER   106      40.770  36.963  35.439  1.00 25.00           C
ATOM    107  CA  CYS   107      43.707  34.891  36.779  1.00 25.00           C
ATOM    108  CA  ASP   108      47.308  33.754  36.139  1.00 25.00           C
ATOM    109  CA  TYR   109      48.818  30.482  34.911  1.00 25.00           C
ATOM    110  CA  VAL   110      51.150  30.125  37.915  1.00 25.00           C
ATOM    111  CA  TYR   111      50.236  31.260  41.490  1.00 25.00           C
ATOM    112  CA  LEU   112      48.323  28.144  42.594  1.00 25.00           C
ATOM    113  CA  ALA   113      46.649  24.763  43.208  1.00 25.00           C
ATOM    114  CA  VAL   114      45.784  21.540  45.034  1.00 25.00           C
ATOM    115  CA  TYR   115      44.769  19.343  47.968  1.00 25.00           C
ATOM    116  CA  PRO   116      46.659  18.459  51.113  1.00 25.00           C
ATOM    117  CA  THR   117      47.468  16.774  54.375  1.00 25.00           C
ATOM    118  CA  PRO   118      49.230  14.805  57.177  1.00 25.00           C
ATOM    119  CA  GLU   119      49.252  12.468  60.126  1.00 25.00           C
ATOM    120  CA  MET   120      46.582  12.249  62.821  1.00 25.00           C
ATOM    121  CA  LYS   121      45.961  14.017  66.149  1.00 25.00           C
ATOM    122  CA  ASN   122      43.258  15.859  68.132  1.00 25.00           C
TER
END
