
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  101 (  101),  selected  101 , name T0304TS599_3-D1
# Molecule2: number of CA atoms  101 (  799),  selected  101 , name T0304_D1.pdb
# PARAMETERS: T0304TS599_3-D1.T0304_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        48 - 91          4.99    12.02
  LONGEST_CONTINUOUS_SEGMENT:    44        49 - 92          4.91    12.19
  LONGEST_CONTINUOUS_SEGMENT:    44        50 - 93          4.98    12.50
  LCS_AVERAGE:     31.36

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        57 - 85          2.00    12.29
  LONGEST_CONTINUOUS_SEGMENT:    29        58 - 86          1.99    12.11
  LCS_AVERAGE:     15.09

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        65 - 85          1.00    12.59
  LCS_AVERAGE:      9.91

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  101
LCS_GDT     R      17     R      17      3    7   14     3    4    4    6    7    8   10   11   11   12   14   16   16   16   25   27   28   31   37   37 
LCS_GDT     P      18     P      18      4    7   14     4    4    4    6    7    8   10   11   11   12   14   16   21   22   25   27   28   32   37   37 
LCS_GDT     W      19     W      19      4    7   14     4    4    4    5    7    8   10   11   12   18   19   20   26   29   38   43   46   48   53   55 
LCS_GDT     W      20     W      20      4    9   14     4    4    5    7    8    8   14   15   26   26   27   31   36   39   42   45   47   50   56   58 
LCS_GDT     G      21     G      21      4    9   14     5   10   14   15   16   19   21   25   28   32   34   36   39   42   43   48   50   57   62   67 
LCS_GDT     L      22     L      22      4    9   14     3    4    5    8    9   10   18   20   21   23   27   33   38   42   43   48   52   58   62   67 
LCS_GDT     P      23     P      23      4    9   14     3    3   13   19   20   22   25   28   31   36   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     C      24     C      24      3    9   14     3    3    5    7    8    8   10   17   21   26   31   35   39   43   48   51   54   58   62   67 
LCS_GDT     T      25     T      25      4    9   14     3    3    5    7   13   17   22   25   28   31   35   38   41   43   48   51   54   58   62   67 
LCS_GDT     V      26     V      26      4    9   14     3    3    4    7    8   10   17   21   23   28   32   35   41   43   48   51   54   56   59   64 
LCS_GDT     T      27     T      27      4    9   14     3    3    5    7    8    8    9   11   15   20   27   30   32   36   39   42   46   51   54   58 
LCS_GDT     P      28     P      28      4    9   14     2    3    5    6    8    8    9   11   11   20   27   30   32   36   39   42   45   50   53   57 
LCS_GDT     C      29     C      29      3    4   14     3    3    3    4    7    7   11   14   17   22   27   30   32   36   39   42   46   51   54   58 
LCS_GDT     F      30     F      30      3    4   14     3    3    3    5    7    7   13   15   16   22   25   29   32   36   39   42   46   51   54   58 
LCS_GDT     G      31     G      31      3    4   14     3    3    3    4    5    7    9   11   16   24   27   31   36   42   46   51   54   58   62   67 
LCS_GDT     A      32     A      32      3    4   13     3    3    3    5    5    7    9   11   13   16   19   24   29   33   39   48   52   58   62   67 
LCS_GDT     R      33     R      33      3    4   16     3    3    3    5    5    5    7   11   13   20   23   27   31   33   39   48   52   58   62   67 
LCS_GDT     L      34     L      34      3    4   16     3    3    3    5    6    9   15   19   20   22   25   28   32   38   42   48   54   58   62   67 
LCS_GDT     V      35     V      35      3    4   16     3    4    6    6    6   11   13   16   19   21   24   28   32   36   41   46   52   56   61   67 
LCS_GDT     Q      36     Q      36      3    4   16     3    3    3    3    7    7    8    9   14   16   19   26   28   32   34   41   44   50   55   60 
LCS_GDT     E      37     E      37      3    4   16     3    4    7    9   13   14   15   16   20   21   24   28   32   34   36   41   47   50   55   60 
LCS_GDT     G      38     G      38      7    7   16     3    6    7    8    9   10   13   16   17   19   24   27   32   34   35   41   44   50   55   60 
LCS_GDT     N      39     N      39      7    7   16     3    6    7    8    9   10   10   13   17   18   24   27   29   32   35   41   44   50   55   60 
LCS_GDT     R      40     R      40      7    7   16     3    6    7    8    9   10   10   13   17   18   24   28   32   34   41   43   48   54   61   64 
LCS_GDT     L      41     L      41      7    7   16     4    6    7    8    9   10   11   14   19   20   25   30   34   42   43   48   52   57   62   67 
LCS_GDT     H      42     H      42      7    7   40     4    6    7    8    9   10   10   11   14   25   29   33   36   39   43   46   49   57   62   67 
LCS_GDT     Y      43     Y      43      7    7   41     4    6    7    8    9   11   16   21   26   26   27   32   36   39   42   45   48   53   56   60 
LCS_GDT     L      44     L      44      7    7   43     4    6    7    8    9   10   10   11   14   17   21   26   29   30   34   39   44   48   55   60 
LCS_GDT     A      45     A      45      6    6   43     4    5    6    6    7    7    8   11   16   17   26   28   32   37   42   45   48   53   61   67 
LCS_GDT     D      46     D      46      6    6   43     4    5    6    6    6    7    8    9   14   23   26   27   34   39   42   45   48   53   56   60 
LCS_GDT     R      47     R      47      6    6   43     4    5    6    8    8   10   10   11   20   23   26   29   34   38   42   45   47   52   56   60 
LCS_GDT     A      48     A      48      6    6   44     4    5    6    6    7    7    8    9   20   23   26   29   34   39   42   45   48   52   56   60 
LCS_GDT     G      49     G      49      6    6   44     0    3    6    6    6    7   18   25   28   32   34   36   39   42   43   48   54   58   62   67 
LCS_GDT     I      50     I      50      4    5   44     4    4    4    5    6    7    9   12   16   25   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     R      51     R      51      4    5   44     4    4    4    5    6    6    9   12   24   32   36   39   41   43   48   51   54   57   60   65 
LCS_GDT     G      52     G      52      4   24   44     4    4    4    5    6   17   23   29   33   36   38   39   41   43   48   51   54   57   60   65 
LCS_GDT     L      53     L      53     17   28   44     8   14   17   20   24   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     F      54     F      54     17   28   44     8   14   17   20   24   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     S      55     S      55     17   28   44    10   14   17   19   24   27   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     D      56     D      56     17   28   44    10   14   17   20   24   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     A      57     A      57     17   29   44    10   14   17   20   24   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     D      58     D      58     17   29   44    10   14   17   20   24   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     A      59     A      59     17   29   44    10   14   17   20   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     Y      60     Y      60     17   29   44    10   14   17   20   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     H      61     H      61     17   29   44    10   14   17   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L      62     L      62     17   29   44    10   14   17   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     D      63     D      63     20   29   44    10   14   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     Q      64     Q      64     20   29   44    10   14   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     A      65     A      65     21   29   44    15   17   19   22   25   27   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     F      66     F      66     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     P      67     P      67     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L      68     L      68     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L      69     L      69     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     M      70     M      70     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     K      71     K      71     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     Q      72     Q      72     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L      73     L      73     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     E      74     E      74     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L      75     L      75     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     M      76     M      76     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L      77     L      77     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     T      78     T      78     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     S      79     S      79     21   29   44    15   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     G      80     G      80     21   29   44    13   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     E      81     E      81     21   29   44    13   17   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L      82     L      82     21   29   44     3   15   19   22   25   29   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     N      83     N      83     21   29   44     4    5   19   22   25   27   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     P      84     P      84     21   29   44     4    4    5   19   20   23   26   30   36   37   37   39   41   43   47   51   54   56   61   67 
LCS_GDT     R      85     R      85     21   29   44     9   16   19   22   25   29   33   35   36   37   38   39   41   43   47   51   54   58   62   67 
LCS_GDT     H      86     H      86      5   29   44     4    4    5    6   21   27   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     Q      87     Q      87      5    7   44     3    3    5    6    6    9   10   12   13   27   31   33   41   43   48   51   54   56   61   67 
LCS_GDT     H      88     H      88      7    8   44     4    5    7    8    8   14   16   20   24   28   33   37   41   43   48   51   54   58   62   67 
LCS_GDT     T      89     T      89      7    8   44     4    6    7    8   10   16   19   20   25   28   33   37   41   43   48   51   54   58   62   67 
LCS_GDT     V      90     V      90      7    8   44     4    6    7    8    8   14   16   20   24   27   31   36   40   43   48   51   54   58   62   67 
LCS_GDT     T      91     T      91      7    8   44     4    6    7    8    8   14   16   19   24   27   30   35   38   43   48   51   54   58   62   67 
LCS_GDT     L      92     L      92      7    8   44     4    6    7    8    8   14   15   15   17   21   26   30   32   36   40   46   51   55   58   62 
LCS_GDT     Y      93     Y      93      7    8   44     4    6    7    8    8   14   15   15   18   22   27   30   32   36   40   45   50   55   58   62 
LCS_GDT     A      94     A      94      7    8   33     4    6    7    8    8   14   15   15   17   22   26   30   32   36   39   42   46   51   54   58 
LCS_GDT     K      95     K      95      4    8   24     3    3    5    7    8   14   15   15   16   22   25   28   30   34   38   40   45   51   54   58 
LCS_GDT     G      96     G      96      6    8   24     4    6    7    7    8   14   15   15   17   22   25   28   30   34   38   40   45   51   54   58 
LCS_GDT     L      97     L      97      6    8   24     4    6    7    7    8   14   15   15   17   22   25   30   32   36   39   42   45   51   54   58 
LCS_GDT     T      98     T      98      6    8   24     4    6    7    7    8   14   15   15   17   22   26   30   32   36   39   42   46   51   55   60 
LCS_GDT     C      99     C      99      6    8   24     4    6    7    7    8   14   15   15   17   22   26   30   32   36   39   42   46   51   55   60 
LCS_GDT     K     100     K     100      6    8   24     4    6    7    7    8   14   15   15   17   22   26   30   32   36   39   42   46   51   55   60 
LCS_GDT     A     101     A     101      6    8   24     3    6    7    7    8   14   15   15   17   22   26   30   32   36   40   46   51   55   58   64 
LCS_GDT     D     102     D     102      3    8   24     3    3    4    7    8   14   15   15   17   22   25   28   32   36   40   46   51   55   58   64 
LCS_GDT     T     103     T     103      3    5   24     3    6    7    8    8    8   10   14   17   22   24   28   35   42   46   51   54   58   62   67 
LCS_GDT     L     104     L     104      3    5   24     3    3    3    4    9   13   16   22   28   30   33   36   41   43   48   51   54   58   62   67 
LCS_GDT     S     105     S     105      3   13   24     3    3    7    9   13   14   15   19   20   26   30   34   41   43   48   51   54   58   62   67 
LCS_GDT     S     106     S     106      3   13   24     3    3    5    6   13   14   15   19   27   30   33   35   41   43   48   51   54   58   62   67 
LCS_GDT     C     107     C     107      3   13   24     3    3    5    9   11   14   15   19   21   24   28   30   36   42   44   51   54   58   62   67 
LCS_GDT     D     108     D     108      8   13   24     3    6    9   10   13   14   16   19   22   27   31   34   39   42   48   51   54   58   62   67 
LCS_GDT     Y     109     Y     109      8   13   24     4    6    9   10   13   14   16   19   24   29   31   36   39   42   48   51   54   58   62   67 
LCS_GDT     V     110     V     110      8   13   24     4    6    9   10   13   14   16   19   24   29   32   36   39   43   48   51   54   58   62   67 
LCS_GDT     Y     111     Y     111      8   13   24     4    6   11   15   21   27   32   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     L     112     L     112      8   13   19     4    6   11   15   21   27   33   35   36   37   38   39   41   43   48   51   54   58   62   67 
LCS_GDT     A     113     A     113      8   13   19     4    6    9   10   13   14   22   29   36   37   37   38   41   43   48   51   54   58   62   67 
LCS_GDT     V     114     V     114      8   13   19     4    6    9   10   13   14   21   22   25   31   33   37   40   43   48   51   54   58   62   67 
LCS_GDT     Y     115     Y     115      8   13   19     4    6    9   10   13   14   15   19   20   23   24   28   32   34   39   42   47   54   61   67 
LCS_GDT     P     116     P     116      8   13   19     3    4    9   10   13   14   15   19   20   23   24   28   32   34   39   42   47   53   57   64 
LCS_GDT     T     117     T     117      7   13   19     3    4    7   10   13   14   15   19   20   23   24   28   31   36   42   47   52   57   62   67 
LCS_AVERAGE  LCS_A:  18.79  (   9.91   15.09   31.36 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     17     19     22     25     29     33     35     36     37     38     39     41     43     48     51     54     58     62     67 
GDT PERCENT_CA  14.85  16.83  18.81  21.78  24.75  28.71  32.67  34.65  35.64  36.63  37.62  38.61  40.59  42.57  47.52  50.50  53.47  57.43  61.39  66.34
GDT RMS_LOCAL    0.27   0.36   0.71   1.05   1.45   2.00   2.21   2.35   2.46   2.59   2.87   2.97   3.25   3.88   4.66   4.75   5.15   5.78   6.24   6.64
GDT RMS_ALL_CA  12.15  12.34  12.34  12.40  12.31  12.16  12.13  12.01  12.06  12.05  12.08  12.11  12.15  11.82  11.56  11.83  11.53  11.16  11.07  10.99

#      Molecule1      Molecule2       DISTANCE
LGA    R      17      R      17         27.165
LGA    P      18      P      18         23.461
LGA    W      19      W      19         16.514
LGA    W      20      W      20         15.860
LGA    G      21      G      21         10.012
LGA    L      22      L      22         10.173
LGA    P      23      P      23          6.412
LGA    C      24      C      24          8.258
LGA    T      25      T      25          9.994
LGA    V      26      V      26         13.151
LGA    T      27      T      27         17.766
LGA    P      28      P      28         18.015
LGA    C      29      C      29         17.958
LGA    F      30      F      30         15.631
LGA    G      31      G      31          9.475
LGA    A      32      A      32         11.807
LGA    R      33      R      33         12.786
LGA    L      34      L      34         11.987
LGA    V      35      V      35         15.030
LGA    Q      36      Q      36         21.009
LGA    E      37      E      37         20.904
LGA    G      38      G      38         22.089
LGA    N      39      N      39         19.642
LGA    R      40      R      40         15.397
LGA    L      41      L      41         12.483
LGA    H      42      H      42         11.558
LGA    Y      43      Y      43         12.105
LGA    L      44      L      44         14.772
LGA    A      45      A      45         11.573
LGA    D      46      D      46         13.430
LGA    R      47      R      47         15.145
LGA    A      48      A      48         13.361
LGA    G      49      G      49          9.647
LGA    I      50      I      50          7.008
LGA    R      51      R      51          8.303
LGA    G      52      G      52          6.936
LGA    L      53      L      53          2.109
LGA    F      54      F      54          2.711
LGA    S      55      S      55          3.281
LGA    D      56      D      56          2.646
LGA    A      57      A      57          2.823
LGA    D      58      D      58          2.368
LGA    A      59      A      59          0.998
LGA    Y      60      Y      60          0.845
LGA    H      61      H      61          0.840
LGA    L      62      L      62          1.529
LGA    D      63      D      63          1.566
LGA    Q      64      Q      64          2.322
LGA    A      65      A      65          3.032
LGA    F      66      F      66          3.103
LGA    P      67      P      67          2.785
LGA    L      68      L      68          2.096
LGA    L      69      L      69          2.074
LGA    M      70      M      70          2.168
LGA    K      71      K      71          1.422
LGA    Q      72      Q      72          0.656
LGA    L      73      L      73          0.947
LGA    E      74      E      74          0.602
LGA    L      75      L      75          0.825
LGA    M      76      M      76          1.080
LGA    L      77      L      77          0.436
LGA    T      78      T      78          1.696
LGA    S      79      S      79          2.562
LGA    G      80      G      80          2.657
LGA    E      81      E      81          3.180
LGA    L      82      L      82          3.379
LGA    N      83      N      83          3.667
LGA    P      84      P      84          5.031
LGA    R      85      R      85          1.295
LGA    H      86      H      86          3.231
LGA    Q      87      Q      87          8.653
LGA    H      88      H      88         11.160
LGA    T      89      T      89         10.942
LGA    V      90      V      90         11.720
LGA    T      91      T      91         12.699
LGA    L      92      L      92         15.534
LGA    Y      93      Y      93         16.821
LGA    A      94      A      94         20.331
LGA    K      95      K      95         25.785
LGA    G      96      G      96         24.816
LGA    L      97      L      97         21.664
LGA    T      98      T      98         20.164
LGA    C      99      C      99         17.872
LGA    K     100      K     100         17.146
LGA    A     101      A     101         13.830
LGA    D     102      D     102         14.733
LGA    T     103      T     103         12.632
LGA    L     104      L     104         11.086
LGA    S     105      S     105         12.611
LGA    S     106      S     106         11.328
LGA    C     107      C     107         13.810
LGA    D     108      D     108         11.323
LGA    Y     109      Y     109          9.563
LGA    V     110      V     110          8.943
LGA    Y     111      Y     111          3.949
LGA    L     112      L     112          3.558
LGA    A     113      A     113          5.855
LGA    V     114      V     114          7.703
LGA    Y     115      Y     115         11.802
LGA    P     116      P     116         14.432
LGA    T     117      T     117         11.459

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  101  101    4.0     35    2.35    30.941    27.048     1.428

LGA_LOCAL      RMSD =  2.350  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 12.014  Number of atoms =  101 
Std_ALL_ATOMS  RMSD = 10.594  (standard rmsd on all 101 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.567754 * X  +  -0.655648 * Y  +   0.497777 * Z  +  42.713531
  Y_new =   0.743345 * X  +  -0.668134 * Y  +  -0.032190 * Z  +  26.834522
  Z_new =   0.353687 * X  +   0.351743 * Y  +   0.866708 * Z  +  41.650364 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.385530   -2.756063  [ DEG:    22.0892   -157.9108 ]
  Theta =  -0.361510   -2.780083  [ DEG:   -20.7130   -159.2870 ]
  Phi   =   2.223060   -0.918532  [ DEG:   127.3720    -52.6280 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS599_3-D1                               
REMARK     2: T0304_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS599_3-D1.T0304_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  101  101   4.0   35   2.35  27.048    10.59
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS599_3-D1
PFRMAT TS                                                                       
TARGET T0304                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM     17  CA  ARG    17      42.948  38.404  33.401  1.00  0.00              
ATOM     18  CA  PRO    18      39.839  36.819  31.826  1.00  0.00              
ATOM     19  CA  TRP    19      39.993  33.356  33.396  1.00  0.00              
ATOM     20  CA  TRP    20      36.416  32.746  34.267  1.00  0.00              
ATOM     21  CA  GLY    21      36.423  29.294  35.745  1.00  0.00              
ATOM     22  CA  LEU    22      32.850  28.405  36.531  1.00  0.00              
ATOM     23  CA  PRO    23      31.930  26.894  39.836  1.00  0.00              
ATOM     24  CA  CYS    24      28.967  28.926  41.181  1.00  0.00              
ATOM     25  CA  THR    25      29.858  29.863  44.805  1.00  0.00              
ATOM     26  CA  VAL    26      32.567  27.369  45.589  1.00  0.00              
ATOM     27  CA  THR    27      33.222  26.620  49.288  1.00  0.00              
ATOM     28  CA  PRO    28      36.067  24.158  49.791  1.00  0.00              
ATOM     29  CA  CYS    29      34.329  21.727  52.176  1.00  0.00              
ATOM     30  CA  PHE    30      31.641  21.172  49.513  1.00  0.00              
ATOM     31  CA  GLY    31      33.654  20.961  46.360  1.00  0.00              
ATOM     32  CA  ALA    32      32.488  17.518  45.344  1.00  0.00              
ATOM     33  CA  ARG    33      33.268  16.251  48.812  1.00  0.00              
ATOM     34  CA  LEU    34      36.831  17.652  48.518  1.00  0.00              
ATOM     35  CA  VAL    35      37.403  16.008  45.105  1.00  0.00              
ATOM     36  CA  GLN    36      35.939  12.759  46.329  1.00  0.00              
ATOM     37  CA  GLU    37      38.173  12.660  49.450  1.00  0.00              
ATOM     38  CA  GLY    38      41.507  13.588  47.948  1.00  0.00              
ATOM     39  CA  ASN    39      41.648  17.223  49.160  1.00  0.00              
ATOM     40  CA  ARG    40      43.351  18.990  46.282  1.00  0.00              
ATOM     41  CA  LEU    41      41.978  22.270  45.002  1.00  0.00              
ATOM     42  CA  HIS    42      44.088  22.667  41.809  1.00  0.00              
ATOM     43  CA  TYR    43      43.249  25.776  39.848  1.00  0.00              
ATOM     44  CA  LEU    44      44.996  25.020  36.531  1.00  0.00              
ATOM     45  CA  ALA    45      44.384  21.283  36.513  1.00  0.00              
ATOM     46  CA  ASP    46      40.560  21.448  36.776  1.00  0.00              
ATOM     47  CA  ARG    47      40.015  24.371  34.379  1.00  0.00              
ATOM     48  CA  ALA    48      42.211  22.814  31.665  1.00  0.00              
ATOM     49  CA  GLY    49      40.812  19.275  31.903  1.00  0.00              
ATOM     50  CA  ILE    50      43.910  17.311  33.124  1.00  0.00              
ATOM     51  CA  ARG    51      41.986  14.687  35.016  1.00  0.00              
ATOM     52  CA  GLY    52      39.581  13.653  32.328  1.00  0.00              
ATOM     53  CA  LEU    53      37.765  15.099  29.369  1.00  0.00              
ATOM     54  CA  PHE    54      40.739  16.281  27.338  1.00  0.00              
ATOM     55  CA  SER    55      42.886  14.012  25.270  1.00  0.00              
ATOM     56  CA  ASP    56      45.813  12.105  26.738  1.00  0.00              
ATOM     57  CA  ALA    57      48.417  14.502  25.239  1.00  0.00              
ATOM     58  CA  ASP    58      46.613  17.500  26.614  1.00  0.00              
ATOM     59  CA  ALA    59      46.400  15.878  30.105  1.00  0.00              
ATOM     60  CA  TYR    60      50.194  15.342  30.114  1.00  0.00              
ATOM     61  CA  HIS    61      50.751  18.983  29.084  1.00  0.00              
ATOM     62  CA  LEU    62      48.419  20.291  31.857  1.00  0.00              
ATOM     63  CA  ASP    63      50.127  18.166  34.550  1.00  0.00              
ATOM     64  CA  GLN    64      53.499  19.659  33.563  1.00  0.00              
ATOM     65  CA  ALA    65      51.988  23.169  33.777  1.00  0.00              
ATOM     66  CA  PHE    66      50.396  22.675  37.231  1.00  0.00              
ATOM     67  CA  PRO    67      53.557  21.340  38.889  1.00  0.00              
ATOM     68  CA  LEU    68      55.543  24.255  37.457  1.00  0.00              
ATOM     69  CA  LEU    69      52.975  26.803  38.713  1.00  0.00              
ATOM     70  CA  MET    70      52.879  25.379  42.186  1.00  0.00              
ATOM     71  CA  LYS    71      56.694  25.414  42.315  1.00  0.00              
ATOM     72  CA  GLN    72      56.799  29.065  41.297  1.00  0.00              
ATOM     73  CA  LEU    73      54.220  29.938  43.987  1.00  0.00              
ATOM     74  CA  GLU    74      56.211  28.025  46.608  1.00  0.00              
ATOM     75  CA  LEU    75      59.392  29.860  45.604  1.00  0.00              
ATOM     76  CA  MET    76      57.594  33.207  45.932  1.00  0.00              
ATOM     77  CA  LEU    77      56.251  32.286  49.355  1.00  0.00              
ATOM     78  CA  THR    78      59.597  31.222  50.775  1.00  0.00              
ATOM     79  CA  SER    79      61.304  34.337  49.416  1.00  0.00              
ATOM     80  CA  GLY    80      59.009  36.945  50.723  1.00  0.00              
ATOM     81  CA  GLU    81      57.579  38.104  47.446  1.00  0.00              
ATOM     82  CA  LEU    82      54.046  37.755  48.621  1.00  0.00              
ATOM     83  CA  ASN    83      52.886  39.368  51.814  1.00  0.00              
ATOM     84  CA  PRO    84      51.802  37.853  55.091  1.00  0.00              
ATOM     85  CA  ARG    85      48.080  37.964  54.496  1.00  0.00              
ATOM     86  CA  HIS    86      48.416  36.335  51.059  1.00  0.00              
ATOM     87  CA  GLN    87      50.647  33.359  51.947  1.00  0.00              
ATOM     88  CA  HIS    88      48.326  31.864  54.506  1.00  0.00              
ATOM     89  CA  THR    89      44.913  32.548  52.868  1.00  0.00              
ATOM     90  CA  VAL    90      43.550  30.529  49.984  1.00  0.00              
ATOM     91  CA  THR    91      41.544  32.281  47.303  1.00  0.00              
ATOM     92  CA  LEU    92      39.106  30.376  45.199  1.00  0.00              
ATOM     93  CA  TYR    93      37.998  31.928  41.995  1.00  0.00              
ATOM     94  CA  ALA    94      34.842  30.579  40.255  1.00  0.00              
ATOM     95  CA  LYS    95      32.270  32.753  41.978  1.00  0.00              
ATOM     96  CA  GLY    96      34.039  34.148  44.921  1.00  0.00              
ATOM     97  CA  LEU    97      35.470  31.657  47.372  1.00  0.00              
ATOM     98  CA  THR    98      37.662  32.774  50.194  1.00  0.00              
ATOM     99  CA  CYS    99      39.435  30.191  52.285  1.00  0.00              
ATOM    100  CA  LYS   100      41.169  31.277  55.392  1.00  0.00              
ATOM    101  CA  ALA   101      44.353  29.385  56.112  1.00  0.00              
ATOM    102  CA  ASP   102      43.222  28.328  59.517  1.00  0.00              
ATOM    103  CA  THR   103      39.551  27.417  59.139  1.00  0.00              
ATOM    104  CA  LEU   104      39.537  25.474  55.846  1.00  0.00              
ATOM    105  CA  SER   105      42.636  23.572  56.791  1.00  0.00              
ATOM    106  CA  SER   106      41.287  22.582  60.256  1.00  0.00              
ATOM    107  CA  CYS   107      37.996  21.329  58.850  1.00  0.00              
ATOM    108  CA  ASP   108      39.127  19.482  55.765  1.00  0.00              
ATOM    109  CA  TYR   109      38.544  22.035  53.067  1.00  0.00              
ATOM    110  CA  VAL   110      40.524  22.457  49.885  1.00  0.00              
ATOM    111  CA  TYR   111      41.533  25.960  48.702  1.00  0.00              
ATOM    112  CA  LEU   112      42.219  26.720  45.080  1.00  0.00              
ATOM    113  CA  ALA   113      44.283  29.668  44.211  1.00  0.00              
ATOM    114  CA  VAL   114      43.640  31.489  40.892  1.00  0.00              
ATOM    115  CA  TYR   115      46.017  34.264  40.032  1.00  0.00              
ATOM    116  CA  PRO   116      45.964  37.007  37.487  1.00  0.00              
ATOM    117  CA  THR   117      48.962  36.741  35.227  1.00  0.00              
TER                                                                             
END
