
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  144 (  144),  selected  144 , name T0310TS168_3-D2
# Molecule2: number of CA atoms  144 ( 1137),  selected  144 , name T0310_D2.pdb
# PARAMETERS: T0310TS168_3-D2.T0310_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144       216 - 359         4.33     4.33
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    57       303 - 359         1.89     4.49
  LCS_AVERAGE:     25.35

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       226 - 241         0.97     4.47
  LONGEST_CONTINUOUS_SEGMENT:    16       307 - 322         0.99     5.71
  LCS_AVERAGE:      6.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     E     216     E     216      3   28  144     0    2    7   17   51   72   92  114  119  122  126  128  129  131  131  134  137  138  140  141 
LCS_GDT     G     217     G     217      3   33  144     6   23   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     218     I     218      3   33  144     7   15   23   60   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     C     219     C     219      4   33  144     3    9   30   55   92  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     H     220     H     220      4   33  144     6   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     M     221     M     221      4   33  144     3   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     Y     222     Y     222      4   33  144     3   11   30   65   90  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     223     V     223      4   33  144     9   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     224     D     224      4   33  144     9   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     225     S     225      3   33  144     3    6   14   27   63   94  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     226     E     226     16   33  144     6   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     227     A     227     16   33  144     9   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     228     S     228     16   33  144     6   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     229     V     229     16   33  144     8   23   50   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     230     D     230     16   33  144     4    9   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     K     231     K     231     16   33  144     9   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     232     V     232     16   33  144     6   27   50   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     T     233     T     233     16   33  144     8   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     R     234     R     234     16   33  144     7   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     235     L     235     16   33  144     9   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     236     V     236     16   33  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     R     237     R     237     16   33  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     238     D     238     16   33  144     6   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     239     S     239     16   33  144     9   22   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     K     240     K     240     16   33  144     6   18   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     C     241     C     241     16   33  144     4   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     242     E     242     12   33  144     3   12   41   69   92  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     Y     243     Y     243      3   33  144     3   16   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     P     244     P     244      4   33  144     3    4    4    5   12   16   74   98  119  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     245     A     245      4   33  144     8   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     246     A     246      4   33  144     3   11   43   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     C     247     C     247      4   33  144     3    4    5   25   54   78  105  116  119  122  126  128  129  131  131  134  137  138  140  141 
LCS_GDT     N     248     N     248      4   33  144     3   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     249     A     249      4   33  144     3   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     250     L     250      4   29  144     3    4   12   31   64   88  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     251     E     251      5   29  144    11   16   43   72   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     T     252     T     252      5   29  144     3   20   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     253     L     253      5   29  144     3   10   22   55   86  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     254     L     254      5   29  144     3   22   45   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     255     I     255      5   11  144     3    4    6   14   47   65   84  102  113  121  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     H     256     H     256      4   22  144     3    4   13   32   49   72   87  103  113  121  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     R     257     R     257      4   22  144     4    4   37   61   91  101  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     258     D     258      5   22  144     4   19   43   71   93  102  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     259     L     259      5   22  144     4   15   42   67   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     260     L     260      5   22  144     4    4    7   49   92  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     R     261     R     261      5   22  144     4    4   37   66   91  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     T     262     T     262      5   22  144     4    4   30   53   82  100  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     P     263     P     263      3   22  144     0    3   17   50   73  100  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     264     L     264     14   22  144    11   14   38   71   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     F     265     F     265     14   22  144    11   17   36   71   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     266     D     266     14   22  144    11   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     Q     267     Q     267     14   22  144    11   19   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     268     I     268     14   22  144    11   17   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     269     I     269     14   22  144    11   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     270     D     270     14   22  144    11   16   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     M     271     M     271     14   22  144    11   11   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     272     L     272     14   22  144    11   24   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     R     273     R     273     14   22  144    11   18   50   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     274     V     274     14   22  144    11   16   46   74   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     275     E     275     14   22  144     4   20   46   74   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     Q     276     Q     276     14   22  144     5   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     277     V     277     14   22  144     3    4   10   44   72  100  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     K     278     K     278      3   16  144     3   12   33   56   78  100  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     279     I     279      3   16  144     3   12   34   61   79  102  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     H     280     H     280      3   13  144     3    4    6   12   16   53   62   83   97  112  122  126  128  131  132  134  137  138  140  141 
LCS_GDT     A     281     A     281      4   13  144     3    5   11   13   19   53   62   69   85  103  116  126  128  131  132  134  137  138  140  141 
LCS_GDT     G     282     G     282      4   13  144     3    4    6    8    9   22   33   45   53   69   87  106  111  116  128  134  137  138  140  141 
LCS_GDT     P     283     P     283      7   13  144     5    7   11   16   26   33   44   64   76   91  102  109  123  129  132  134  137  138  140  141 
LCS_GDT     K     284     K     284      7    9  144     5   10   22   41   68   92  103  115  120  122  125  127  129  131  132  134  137  138  140  141 
LCS_GDT     F     285     F     285      7    8  144     5    7    7    7   13   14   22   80  104  121  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     286     A     286      7    8  144     5    7   31   42   77   99  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     287     S     287      7    8  144     5   12   20   39   58   79  102  112  119  122  125  128  129  131  132  134  137  138  140  141 
LCS_GDT     Y     288     Y     288      7    8  144     4    7    7    7    8    8   48  102  112  122  126  128  129  130  131  134  135  137  139  141 
LCS_GDT     L     289     L     289      7    8  144     4    7    7    7   54   78   96  106  113  122  126  128  129  130  131  132  135  137  139  141 
LCS_GDT     T     290     T     290      3    8  144     3    3    3    3    8    8   40   54   83  110  113  123  128  130  131  131  133  135  136  138 
LCS_GDT     F     291     F     291      3    3  144     3    3    3    5    6    7    9    9   10   19   91   96  105  124  126  129  131  132  134  136 
LCS_GDT     V     292     V     292      3    4  144     9   21   36   61   83  100  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     K     293     K     293      3    5  144     3    8   15   24   28   34   42   65  103  111  122  126  128  131  132  134  137  138  140  141 
LCS_GDT     S     294     S     294      4    5  144     3    4    4    7   11   12   16   30   35   52   69   99  110  124  128  133  137  138  140  141 
LCS_GDT     L     295     L     295      4    5  144     3    4    4    4   10   15   24   31   45   66   84  101  124  127  131  134  137  138  140  141 
LCS_GDT     R     296     R     296      4    5  144     3    4    4    4    8    9   15   28   34   37   43   46   55   66  103  117  126  138  140  141 
LCS_GDT     T     297     T     297      4    6  144     3    4    4    5    8    9   14   18   26   37   43   46   55   63   74   91  126  133  140  141 
LCS_GDT     E     298     E     298      4    6  144     3    4    4    4   13   14   18   28   34   37   51   59   72   91  125  129  136  138  140  141 
LCS_GDT     Y     299     Y     299      4    6  144     3    4    4    5    6   21   24   27   43   60   82  106  118  131  132  134  137  138  140  141 
LCS_GDT     G     300     G     300      5   12  144     3    4    9   11   13   18   35   50   68   95  106  114  124  131  132  134  137  138  140  141 
LCS_GDT     D     301     D     301      5   22  144     3    8   10   14   31   64   79  104  118  121  122  126  129  131  132  134  137  138  140  141 
LCS_GDT     L     302     L     302      5   30  144     3    8   13   36   51   84  103  116  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     303     E     303      5   57  144     3   12   39   71   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     304     L     304      5   57  144     5   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     C     305     C     305      4   57  144     3   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     306     I     306      5   57  144     6   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     307     E     307     16   57  144     4   16   35   64   90  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     308     V     308     16   57  144     4   15   22   46   80  100  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     309     V     309     16   57  144     9   15   33   65   92  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     310     D     310     16   57  144     4   15   33   65   92  102  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     N     311     N     311     16   57  144     3   16   33   68   92  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     312     V     312     16   57  144    11   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     Q     313     Q     313     16   57  144    11   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     314     D     314     16   57  144    11   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     315     A     315     16   57  144    11   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     316     I     316     16   57  144    11   25   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     317     D     317     16   57  144    11   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     H     318     H     318     16   57  144    11   21   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     319     I     319     16   57  144    11   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     H     320     H     320     16   57  144    11   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     K     321     K     321     16   57  144    11   21   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     Y     322     Y     322     16   57  144     0   16   39   71   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     G     323     G     323      3   57  144     0    3    4   46   67   87  110  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     324     S     324      3   57  144     2    5   28   60   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     325     S     325      3   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     H     326     H     326      4   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     T     327     T     327      5   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     328     D     328      5   57  144     3    5   18   43   79   99  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     329     V     329      6   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     I     330     I     330      6   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     331     V     331      6   57  144     3   17   45   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     T     332     T     332      6   57  144     3    6   26   60   91  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     333     E     333     13   57  144     5   25   50   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     334     D     334     13   57  144     3   14   31   64   92  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     335     E     335     14   57  144    11   28   46   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     N     336     N     336     14   57  144    11   28   46   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     T     337     T     337     14   57  144    11   28   46   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     338     A     338     14   57  144    11   28   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     E     339     E     339     14   57  144    11   28   45   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     F     340     F     340     14   57  144    11   28   45   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     F     341     F     341     14   57  144    11   28   48   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     L     342     L     342     14   57  144    11   16   45   75   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     Q     343     Q     343     14   57  144    11   15   40   69   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     H     344     H     344     14   57  144    11   28   47   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     345     V     345     14   57  144    11   28   50   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     D     346     D     346     14   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     347     S     347     14   57  144     4   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     348     A     348     14   57  144     4   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     C     349     C     349     13   57  144     5   19   46   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     V     350     V     350      7   57  144     4   17   46   76   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     F     351     F     351      7   57  144     5   20   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     W     352     W     352      8   57  144     5   10   33   67   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     N     353     N     353      8   57  144     7   27   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     A     354     A     354      8   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     355     S     355      8   57  144     3   22   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     T     356     T     356      8   57  144     3   21   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     R     357     R     357      8   57  144     9   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     F     358     F     358      8   57  144     9   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_GDT     S     359     S     359      8   57  144    10   28   51   77   93  103  111  118  120  122  126  128  129  131  132  134  137  138  140  141 
LCS_AVERAGE  LCS_A:  43.94  (   6.48   25.35  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     28     51     77     93    103    111    118    120    122    126    128    129    131    132    134    137    138    140    141 
GDT PERCENT_CA   7.64  19.44  35.42  53.47  64.58  71.53  77.08  81.94  83.33  84.72  87.50  88.89  89.58  90.97  91.67  93.06  95.14  95.83  97.22  97.92
GDT RMS_LOCAL    0.23   0.62   1.12   1.41   1.61   1.79   1.98   2.14   2.22   2.32   2.52   2.62   2.66   2.90   3.20   3.26   3.61   3.74   4.06   4.11
GDT RMS_ALL_CA   8.06   4.62   4.55   4.49   4.57   4.53   4.47   4.48   4.47   4.45   4.52   4.52   4.50   4.40   4.39   4.38   4.35   4.35   4.36   4.35

#      Molecule1      Molecule2       DISTANCE
LGA    E     216      E     216          6.162
LGA    G     217      G     217          1.898
LGA    I     218      I     218          2.880
LGA    C     219      C     219          2.607
LGA    H     220      H     220          1.017
LGA    M     221      M     221          1.713
LGA    Y     222      Y     222          2.783
LGA    V     223      V     223          1.067
LGA    D     224      D     224          1.155
LGA    S     225      S     225          3.789
LGA    E     226      E     226          0.987
LGA    A     227      A     227          0.565
LGA    S     228      S     228          0.759
LGA    V     229      V     229          1.110
LGA    D     230      D     230          1.710
LGA    K     231      K     231          0.651
LGA    V     232      V     232          1.106
LGA    T     233      T     233          1.108
LGA    R     234      R     234          1.068
LGA    L     235      L     235          0.706
LGA    V     236      V     236          0.698
LGA    R     237      R     237          0.632
LGA    D     238      D     238          0.710
LGA    S     239      S     239          1.504
LGA    K     240      K     240          1.934
LGA    C     241      C     241          1.504
LGA    E     242      E     242          2.088
LGA    Y     243      Y     243          1.933
LGA    P     244      P     244          5.691
LGA    A     245      A     245          1.663
LGA    A     246      A     246          2.138
LGA    C     247      C     247          5.328
LGA    N     248      N     248          1.464
LGA    A     249      A     249          1.330
LGA    L     250      L     250          3.654
LGA    E     251      E     251          2.520
LGA    T     252      T     252          1.852
LGA    L     253      L     253          2.803
LGA    L     254      L     254          1.751
LGA    I     255      I     255          6.215
LGA    H     256      H     256          6.670
LGA    R     257      R     257          3.851
LGA    D     258      D     258          3.365
LGA    L     259      L     259          2.397
LGA    L     260      L     260          2.794
LGA    R     261      R     261          2.683
LGA    T     262      T     262          3.495
LGA    P     263      P     263          3.883
LGA    L     264      L     264          2.805
LGA    F     265      F     265          3.046
LGA    D     266      D     266          2.110
LGA    Q     267      Q     267          1.572
LGA    I     268      I     268          1.929
LGA    I     269      I     269          2.068
LGA    D     270      D     270          2.264
LGA    M     271      M     271          2.023
LGA    L     272      L     272          1.660
LGA    R     273      R     273          2.248
LGA    V     274      V     274          2.745
LGA    E     275      E     275          2.478
LGA    Q     276      Q     276          1.400
LGA    V     277      V     277          3.502
LGA    K     278      K     278          3.380
LGA    I     279      I     279          3.168
LGA    H     280      H     280          7.984
LGA    A     281      A     281          8.906
LGA    G     282      G     282         11.915
LGA    P     283      P     283         11.068
LGA    K     284      K     284          5.444
LGA    F     285      F     285          5.409
LGA    A     286      A     286          3.968
LGA    S     287      S     287          6.189
LGA    Y     288      Y     288          7.455
LGA    L     289      L     289          7.464
LGA    T     290      T     290          9.543
LGA    F     291      F     291         10.627
LGA    V     292      V     292          3.612
LGA    K     293      K     293          9.916
LGA    S     294      S     294         13.054
LGA    L     295      L     295         11.442
LGA    R     296      R     296         15.683
LGA    T     297      T     297         15.680
LGA    E     298      E     298         13.418
LGA    Y     299      Y     299         10.648
LGA    G     300      G     300         10.211
LGA    D     301      D     301          6.456
LGA    L     302      L     302          4.632
LGA    E     303      E     303          2.381
LGA    L     304      L     304          0.880
LGA    C     305      C     305          1.201
LGA    I     306      I     306          1.095
LGA    E     307      E     307          3.092
LGA    V     308      V     308          3.881
LGA    V     309      V     309          2.961
LGA    D     310      D     310          2.999
LGA    N     311      N     311          2.460
LGA    V     312      V     312          1.506
LGA    Q     313      Q     313          1.475
LGA    D     314      D     314          1.586
LGA    A     315      A     315          1.566
LGA    I     316      I     316          1.482
LGA    D     317      D     317          1.643
LGA    H     318      H     318          1.821
LGA    I     319      I     319          1.616
LGA    H     320      H     320          1.568
LGA    K     321      K     321          2.043
LGA    Y     322      Y     322          2.476
LGA    G     323      G     323          3.791
LGA    S     324      S     324          2.650
LGA    S     325      S     325          1.128
LGA    H     326      H     326          1.124
LGA    T     327      T     327          0.713
LGA    D     328      D     328          3.616
LGA    V     329      V     329          0.285
LGA    I     330      I     330          1.302
LGA    V     331      V     331          1.857
LGA    T     332      T     332          2.597
LGA    E     333      E     333          0.794
LGA    D     334      D     334          2.655
LGA    E     335      E     335          2.137
LGA    N     336      N     336          2.398
LGA    T     337      T     337          1.963
LGA    A     338      A     338          1.786
LGA    E     339      E     339          2.421
LGA    F     340      F     340          2.313
LGA    F     341      F     341          1.485
LGA    L     342      L     342          2.221
LGA    Q     343      Q     343          2.798
LGA    H     344      H     344          1.930
LGA    V     345      V     345          1.152
LGA    D     346      D     346          0.974
LGA    S     347      S     347          1.785
LGA    A     348      A     348          1.737
LGA    C     349      C     349          1.872
LGA    V     350      V     350          2.035
LGA    F     351      F     351          1.720
LGA    W     352      W     352          2.299
LGA    N     353      N     353          0.987
LGA    A     354      A     354          0.864
LGA    S     355      S     355          1.533
LGA    T     356      T     356          1.832
LGA    R     357      R     357          0.498
LGA    F     358      F     358          0.632
LGA    S     359      S     359          0.959

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  144  144    4.0    118    2.14    61.979    57.229     5.269

LGA_LOCAL      RMSD =  2.140  Number of atoms =  118  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.491  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  4.335  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.474822 * X  +   0.879465 * Y  +  -0.032950 * Z  + 136.580887
  Y_new =  -0.516315 * X  +   0.308687 * Y  +   0.798831 * Z  +   5.497426
  Z_new =   0.712715 * X  +  -0.362290 * Y  +   0.600652 * Z  +  22.509644 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.542740    2.598853  [ DEG:   -31.0967    148.9033 ]
  Theta =  -0.793362   -2.348231  [ DEG:   -45.4563   -134.5437 ]
  Phi   =  -0.827238    2.314354  [ DEG:   -47.3973    132.6027 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0310TS168_3-D2                               
REMARK     2: T0310_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0310TS168_3-D2.T0310_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  144  144   4.0  118   2.14  57.229     4.33
REMARK  ---------------------------------------------------------- 
MOLECULE T0310TS168_3-D2
PFRMAT TS
TARGET T0310
MODEL 3
PARENT N/A
ATOM    216  CA  GLU   216     141.321   9.352  19.481  1.00 25.00           C
ATOM    217  CA  GLY   217     138.868  11.959  20.768  1.00 25.00           C
ATOM    218  CA  ILE   218     137.075  15.152  21.681  1.00 25.00           C
ATOM    219  CA  CYS   219     135.708  18.550  22.529  1.00 25.00           C
ATOM    220  CA  HIS   220     137.814  20.863  24.778  1.00 25.00           C
ATOM    221  CA  MET   221     140.875  22.017  26.635  1.00 25.00           C
ATOM    222  CA  TYR   222     140.300  25.730  27.197  1.00 25.00           C
ATOM    223  CA  VAL   223     140.420  28.859  29.383  1.00 25.00           C
ATOM    224  CA  ASP   224     137.957  31.024  31.174  1.00 25.00           C
ATOM    225  CA  SER   225     136.776  30.980  34.763  1.00 25.00           C
ATOM    226  CA  GLU   226     139.349  32.984  36.678  1.00 25.00           C
ATOM    227  CA  ALA   227     141.712  30.317  35.260  1.00 25.00           C
ATOM    228  CA  SER   228     144.200  29.971  38.101  1.00 25.00           C
ATOM    229  CA  VAL   229     146.765  30.264  35.307  1.00 25.00           C
ATOM    230  CA  ASP   230     149.468  27.673  36.109  1.00 25.00           C
ATOM    231  CA  LYS   231     146.808  24.926  36.315  1.00 25.00           C
ATOM    232  CA  VAL   232     145.379  26.023  32.936  1.00 25.00           C
ATOM    233  CA  THR   233     148.885  25.940  31.398  1.00 25.00           C
ATOM    234  CA  ARG   234     149.446  22.424  32.806  1.00 25.00           C
ATOM    235  CA  LEU   235     146.095  21.278  31.349  1.00 25.00           C
ATOM    236  CA  VAL   236     147.047  22.744  27.941  1.00 25.00           C
ATOM    237  CA  ARG   237     150.418  20.932  28.076  1.00 25.00           C
ATOM    238  CA  ASP   238     148.645  17.646  28.932  1.00 25.00           C
ATOM    239  CA  SER   239     146.240  18.151  25.995  1.00 25.00           C
ATOM    240  CA  LYS   240     149.198  18.812  23.654  1.00 25.00           C
ATOM    241  CA  CYS   241     152.512  17.082  23.942  1.00 25.00           C
ATOM    242  CA  GLU   242     151.044  13.636  24.230  1.00 25.00           C
ATOM    243  CA  TYR   243     150.462   9.887  24.473  1.00 25.00           C
ATOM    244  CA  PRO   244     151.545   8.528  21.091  1.00 25.00           C
ATOM    245  CA  ALA   245     148.589  10.364  19.531  1.00 25.00           C
ATOM    246  CA  ALA   246     146.468   7.889  21.379  1.00 25.00           C
ATOM    247  CA  CYS   247     145.236   9.894  24.356  1.00 25.00           C
ATOM    248  CA  ASN   248     141.514  10.719  24.827  1.00 25.00           C
ATOM    249  CA  ALA   249     142.508  14.135  23.360  1.00 25.00           C
ATOM    250  CA  LEU   250     142.012  15.836  19.995  1.00 25.00           C
ATOM    251  CA  GLU   251     142.513  19.067  21.931  1.00 25.00           C
ATOM    252  CA  THR   252     139.615  20.666  20.117  1.00 25.00           C
ATOM    253  CA  LEU   253     139.080  24.265  21.195  1.00 25.00           C
ATOM    254  CA  LEU   254     136.943  26.840  23.002  1.00 25.00           C
ATOM    255  CA  ILE   255     135.787  29.459  20.517  1.00 25.00           C
ATOM    256  CA  HIS   256     137.430  32.878  20.440  1.00 25.00           C
ATOM    257  CA  ARG   257     139.511  35.280  22.610  1.00 25.00           C
ATOM    258  CA  ASP   258     138.825  37.527  25.634  1.00 25.00           C
ATOM    259  CA  LEU   259     140.359  34.902  27.963  1.00 25.00           C
ATOM    260  CA  LEU   260     143.451  34.679  25.715  1.00 25.00           C
ATOM    261  CA  ARG   261     143.784  38.494  25.752  1.00 25.00           C
ATOM    262  CA  THR   262     143.516  38.504  29.574  1.00 25.00           C
ATOM    263  CA  PRO   263     146.493  36.149  29.817  1.00 25.00           C
ATOM    264  CA  LEU   264     148.179  33.049  28.369  1.00 25.00           C
ATOM    265  CA  PHE   265     148.709  33.150  24.577  1.00 25.00           C
ATOM    266  CA  ASP   266     152.501  33.316  25.087  1.00 25.00           C
ATOM    267  CA  GLN   267     152.338  30.322  27.469  1.00 25.00           C
ATOM    268  CA  ILE   268     150.286  28.359  24.899  1.00 25.00           C
ATOM    269  CA  ILE   269     152.844  29.199  22.177  1.00 25.00           C
ATOM    270  CA  ASP   270     155.691  28.034  24.459  1.00 25.00           C
ATOM    271  CA  MET   271     153.827  24.762  25.156  1.00 25.00           C
ATOM    272  CA  LEU   272     153.310  24.227  21.398  1.00 25.00           C
ATOM    273  CA  ARG   273     157.037  24.848  20.774  1.00 25.00           C
ATOM    274  CA  VAL   274     157.942  22.331  23.515  1.00 25.00           C
ATOM    275  CA  GLU   275     156.680  19.891  20.912  1.00 25.00           C
ATOM    276  CA  GLN   276     155.676  21.213  17.459  1.00 25.00           C
ATOM    277  CA  VAL   277     154.344  24.659  16.552  1.00 25.00           C
ATOM    278  CA  LYS   278     151.147  26.597  17.195  1.00 25.00           C
ATOM    279  CA  ILE   279     148.122  28.514  18.275  1.00 25.00           C
ATOM    280  CA  HIS   280     147.100  31.995  19.373  1.00 25.00           C
ATOM    281  CA  ALA   281     147.400  35.735  19.709  1.00 25.00           C
ATOM    282  CA  GLY   282     145.904  39.114  18.575  1.00 25.00           C
ATOM    283  CA  PRO   283     142.734  41.004  17.798  1.00 25.00           C
ATOM    284  CA  LYS   284     140.475  37.911  17.792  1.00 25.00           C
ATOM    285  CA  PHE   285     140.159  38.118  13.981  1.00 25.00           C
ATOM    286  CA  ALA   286     143.966  38.385  13.656  1.00 25.00           C
ATOM    287  CA  SER   287     144.398  35.330  15.926  1.00 25.00           C
ATOM    288  CA  TYR   288     141.879  33.370  13.808  1.00 25.00           C
ATOM    289  CA  LEU   289     143.761  34.351  10.619  1.00 25.00           C
ATOM    290  CA  THR   290     147.064  33.215  12.189  1.00 25.00           C
ATOM    291  CA  PHE   291     145.474  29.873  13.178  1.00 25.00           C
ATOM    292  CA  VAL   292     144.161  29.414   9.609  1.00 25.00           C
ATOM    293  CA  LYS   293     147.645  30.160   8.205  1.00 25.00           C
ATOM    294  CA  SER   294     149.186  27.605  10.606  1.00 25.00           C
ATOM    295  CA  LEU   295     146.605  24.992   9.522  1.00 25.00           C
ATOM    296  CA  ARG   296     147.399  25.699   5.842  1.00 25.00           C
ATOM    297  CA  THR   297     151.143  25.312   6.550  1.00 25.00           C
ATOM    298  CA  GLU   298     150.487  21.984   8.329  1.00 25.00           C
ATOM    299  CA  TYR   299     148.409  20.773   5.349  1.00 25.00           C
ATOM    300  CA  GLY   300     145.941  19.448   7.839  1.00 25.00           C
ATOM    301  CA  ASP   301     145.690  17.412  11.095  1.00 25.00           C
ATOM    302  CA  LEU   302     147.497  16.646  14.369  1.00 25.00           C
ATOM    303  CA  GLU   303     146.210  19.533  16.560  1.00 25.00           C
ATOM    304  CA  LEU   304     144.870  22.733  18.013  1.00 25.00           C
ATOM    305  CA  CYS   305     141.914  24.132  16.161  1.00 25.00           C
ATOM    306  CA  ILE   306     142.020  27.327  18.298  1.00 25.00           C
ATOM    307  CA  GLU   307     141.418  29.510  21.365  1.00 25.00           C
ATOM    308  CA  VAL   308     139.877  31.041  24.489  1.00 25.00           C
ATOM    309  CA  VAL   309     136.362  32.106  25.416  1.00 25.00           C
ATOM    310  CA  ASP   310     134.087  34.479  27.342  1.00 25.00           C
ATOM    311  CA  ASN   311     131.554  34.206  30.108  1.00 25.00           C
ATOM    312  CA  VAL   312     131.551  30.461  30.248  1.00 25.00           C
ATOM    313  CA  GLN   313     128.382  30.239  28.111  1.00 25.00           C
ATOM    314  CA  ASP   314     130.434  30.919  24.951  1.00 25.00           C
ATOM    315  CA  ALA   315     132.923  28.185  25.951  1.00 25.00           C
ATOM    316  CA  ILE   316     130.037  25.734  26.528  1.00 25.00           C
ATOM    317  CA  ASP   317     128.583  26.600  23.092  1.00 25.00           C
ATOM    318  CA  HIS   318     132.006  26.029  21.472  1.00 25.00           C
ATOM    319  CA  ILE   319     132.304  22.643  23.235  1.00 25.00           C
ATOM    320  CA  HIS   320     128.808  21.669  22.008  1.00 25.00           C
ATOM    321  CA  LYS   321     129.756  22.674  18.435  1.00 25.00           C
ATOM    322  CA  TYR   322     130.927  19.072  18.698  1.00 25.00           C
ATOM    323  CA  GLY   323     130.837  15.672  16.899  1.00 25.00           C
ATOM    324  CA  SER   324     129.594  13.526  19.762  1.00 25.00           C
ATOM    325  CA  SER   325     131.333  13.163  23.136  1.00 25.00           C
ATOM    326  CA  HIS   326     134.591  11.845  24.587  1.00 25.00           C
ATOM    327  CA  THR   327     136.293  14.339  26.901  1.00 25.00           C
ATOM    328  CA  ASP   328     138.284  16.600  29.134  1.00 25.00           C
ATOM    329  CA  VAL   329     137.015  20.121  29.844  1.00 25.00           C
ATOM    330  CA  ILE   330     136.445  23.830  30.704  1.00 25.00           C
ATOM    331  CA  VAL   331     137.961  25.738  33.567  1.00 25.00           C
ATOM    332  CA  THR   332     135.998  26.740  36.644  1.00 25.00           C
ATOM    333  CA  GLU   333     138.307  27.804  39.470  1.00 25.00           C
ATOM    334  CA  ASP   334     135.192  27.436  41.580  1.00 25.00           C
ATOM    335  CA  GLU   335     131.913  27.515  39.797  1.00 25.00           C
ATOM    336  CA  ASN   336     128.711  28.875  38.195  1.00 25.00           C
ATOM    337  CA  THR   337     130.284  28.553  34.718  1.00 25.00           C
ATOM    338  CA  ALA   338     131.308  24.944  35.488  1.00 25.00           C
ATOM    339  CA  GLU   339     127.748  24.157  36.658  1.00 25.00           C
ATOM    340  CA  PHE   340     126.329  25.678  33.442  1.00 25.00           C
ATOM    341  CA  PHE   341     128.751  23.575  31.350  1.00 25.00           C
ATOM    342  CA  LEU   342     127.698  20.423  33.253  1.00 25.00           C
ATOM    343  CA  GLN   343     124.010  21.259  32.645  1.00 25.00           C
ATOM    344  CA  HIS   344     124.713  21.759  28.914  1.00 25.00           C
ATOM    345  CA  VAL   345     127.312  19.317  27.678  1.00 25.00           C
ATOM    346  CA  ASP   346     126.897  15.629  26.840  1.00 25.00           C
ATOM    347  CA  SER   347     130.498  15.117  28.029  1.00 25.00           C
ATOM    348  CA  ALA   348     131.302  11.534  29.173  1.00 25.00           C
ATOM    349  CA  CYS   349     134.608  11.999  30.992  1.00 25.00           C
ATOM    350  CA  VAL   350     134.192  15.201  33.007  1.00 25.00           C
ATOM    351  CA  PHE   351     135.537  18.390  34.573  1.00 25.00           C
ATOM    352  CA  TRP   352     136.906  19.445  37.984  1.00 25.00           C
ATOM    353  CA  ASN   353     140.018  21.250  36.844  1.00 25.00           C
ATOM    354  CA  ALA   354     141.537  18.331  34.957  1.00 25.00           C
ATOM    355  CA  SER   355     144.252  16.599  32.923  1.00 25.00           C
ATOM    356  CA  THR   356     142.868  16.002  29.390  1.00 25.00           C
ATOM    357  CA  ARG   357     144.119  12.407  28.963  1.00 25.00           C
ATOM    358  CA  PHE   358     142.206  11.344  32.106  1.00 25.00           C
ATOM    359  CA  SER   359     139.112   9.527  30.963  1.00 25.00           C
TER
END
