
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  144 (  144),  selected  144 , name T0310TS168_4-D2
# Molecule2: number of CA atoms  144 ( 1137),  selected  144 , name T0310_D2.pdb
# PARAMETERS: T0310TS168_4-D2.T0310_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    45       231 - 275         4.79    15.64
  LONGEST_CONTINUOUS_SEGMENT:    45       232 - 276         4.84    15.58
  LCS_AVERAGE:     25.36

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       329 - 347         1.83    14.96
  LCS_AVERAGE:      8.77

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       333 - 345         0.93    15.52
  LONGEST_CONTINUOUS_SEGMENT:    13       334 - 346         0.71    15.39
  LCS_AVERAGE:      5.09

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     E     216     E     216      4   10   43     0    4    6    8   14   22   28   33   37   43   52   58   61   66   67   74   79   80   83   88 
LCS_GDT     G     217     G     217      6   11   43     3    5    8   14   23   27   37   41   49   52   59   61   64   69   73   75   79   84   87   89 
LCS_GDT     I     218     I     218      6   11   43     3    6    8   14   23   27   37   42   49   54   59   61   64   69   73   75   79   85   87   89 
LCS_GDT     C     219     C     219      6   11   43     3    6    9   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     H     220     H     220      6   11   43     3    5   10   15   26   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     M     221     M     221      6   11   43     3    4    8   11   19   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     Y     222     Y     222      6   11   43     3    5    8   11   20   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     V     223     V     223      5   11   43     3    4    8   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     D     224     D     224      5   11   43     3    5    8   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     S     225     S     225      5   11   43     3    5    8   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     E     226     E     226      5   11   43     3    5    9   15   23   28   38   46   49   55   59   61   64   69   73   75   81   85   87   89 
LCS_GDT     A     227     A     227      5   11   43     8   13   14   14   19   27   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     S     228     S     228      3   17   43     3    3    3   10   13   20   31   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     V     229     V     229     12   17   43     3   10   11   13   20   25   31   45   48   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     D     230     D     230     12   17   43     3    4    8   13   15   22   37   46   49   55   59   61   64   69   73   74   79   81   83   85 
LCS_GDT     K     231     K     231     12   17   45     3   10   11   15   23   28   38   46   49   55   59   61   64   69   73   75   79   85   87   89 
LCS_GDT     V     232     V     232     12   17   45     7   12   13   15   22   27   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     T     233     T     233     12   17   45     7   10   11   14   20   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     R     234     R     234     12   17   45     7   10   11   15   23   28   38   46   49   55   59   61   64   69   73   75   79   83   87   88 
LCS_GDT     L     235     L     235     12   17   45     7   10   11   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     V     236     V     236     12   17   45     7   10   11   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     R     237     R     237     12   17   45     7   10   11   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     D     238     D     238     12   17   45     5   10   11   15   22   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     S     239     S     239     12   17   45     7   10   11   15   22   27   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     K     240     K     240     12   17   45     6   10   11   15   23   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     C     241     C     241     11   17   45     3    6   13   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     E     242     E     242      7   17   45     3    6   10   15   22   28   38   46   49   55   59   61   64   68   73   77   81   85   87   89 
LCS_GDT     Y     243     Y     243      7   17   45     3    6   10   15   22   30   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     P     244     P     244      7   17   45     3    4    8   15   22   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     A     245     A     245      7   16   45     3    4   11   17   26   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     A     246     A     246      4   16   45     2    3    6   16   26   32   38   46   48   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     C     247     C     247      4   16   45     3    3    5   15   22   27   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     N     248     N     248      4   16   45     3    6    8   15   22   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     A     249     A     249      4   16   45     3    6    9   17   26   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     L     250     L     250      4   16   45     3    6   10   17   26   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     E     251     E     251      4   14   45     4    4    9   16   26   32   36   41   46   52   58   61   64   69   73   77   81   85   87   89 
LCS_GDT     T     252     T     252      4   14   45     4    5   11   17   26   32   36   41   46   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     L     253     L     253      4   14   45     4    6    8   16   26   32   36   41   46   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     L     254     L     254      4   14   45     4    6   11   17   26   32   36   41   46   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     I     255     I     255      3   14   45     3    3    8   10   16   24   33   41   46   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     H     256     H     256      5   14   45     3    5    9   14   23   30   35   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     R     257     R     257      5   14   45     4    6   11   17   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     D     258     D     258      5   14   45     4    6   11   17   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     L     259     L     259      5   14   45     4    6    9   14   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     L     260     L     260      5   14   45     4    6    9   14   25   32   36   41   46   49   54   59   64   68   71   77   81   85   87   89 
LCS_GDT     R     261     R     261      5   14   45     4    4    9   14   22   32   36   41   46   49   54   59   64   68   71   77   81   85   87   89 
LCS_GDT     T     262     T     262      5   14   45     4    4    9   14   19   29   35   40   46   49   54   59   64   68   71   77   81   85   87   89 
LCS_GDT     P     263     P     263      3   13   45     1    4    5   14   25   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     L     264     L     264     11   13   45    11   12   13   17   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     F     265     F     265     11   13   45    11   12   13   14   23   30   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     D     266     D     266     11   13   45    11   12   13   17   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     Q     267     Q     267     11   13   45    11   12   13   17   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     I     268     I     268     11   13   45    11   12   13   16   26   32   36   41   46   49   54   59   64   68   73   77   81   85   87   89 
LCS_GDT     I     269     I     269     11   13   45    11   12   13   14   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     D     270     D     270     11   13   45    11   12   13   17   26   32   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     M     271     M     271     11   13   45    11   12   13   17   26   32   36   41   46   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     L     272     L     272     11   13   45    11   12   13   16   26   32   36   41   46   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     R     273     R     273     11   13   45    11   12   13   17   26   32   36   41   46   49   54   59   64   68   73   77   81   85   87   89 
LCS_GDT     V     274     V     274     11   13   45    11   12   13   17   26   32   36   41   46   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     E     275     E     275      5   13   45     1    3    6   12   23   31   36   41   46   49   54   59   64   68   72   77   81   85   87   89 
LCS_GDT     Q     276     Q     276      5   10   45     3    5    8   11   14   18   22   27   35   41   51   56   64   68   71   74   78   81   84   89 
LCS_GDT     V     277     V     277      5   10   43     1    5    7    9   17   21   23   29   33   39   44   49   52   58   61   69   72   76   80   82 
LCS_GDT     K     278     K     278      5   10   36     3    5    6   14   19   21   23   24   28   31   37   42   49   50   54   59   64   68   73   76 
LCS_GDT     I     279     I     279      5   10   30     3    5    7   14   16   19   23   24   27   29   32   37   40   48   52   56   61   66   68   72 
LCS_GDT     H     280     H     280      5   10   30     3    4    7    9   12   16   17   22   23   29   32   35   37   42   46   49   51   55   59   62 
LCS_GDT     A     281     A     281      4   10   30     3    3    5    8   11   14   16   17   19   24   32   35   37   42   46   49   51   55   59   61 
LCS_GDT     G     282     G     282      4   10   30     3    4    5    8    9   13   16   18   24   28   32   34   36   42   46   49   51   55   59   61 
LCS_GDT     P     283     P     283      7   10   30     5    7    7    8   12   14   16   18   24   26   32   34   37   42   46   49   51   55   59   61 
LCS_GDT     K     284     K     284      7   10   30     5    7    7    8   12   14   16   18   24   28   32   35   37   42   46   49   51   55   59   62 
LCS_GDT     F     285     F     285      7   10   30     5    7    7    8   12   13   16   17   24   28   31   35   37   42   46   49   51   55   59   62 
LCS_GDT     A     286     A     286      7    8   30     5    7    7    8   11   12   16   17   24   28   31   35   37   42   46   49   51   55   59   62 
LCS_GDT     S     287     S     287      7    8   30     5    7    7    8   11   12   16   17   24   28   31   35   37   42   46   49   51   55   59   62 
LCS_GDT     Y     288     Y     288      7    8   30     4    7    7    8   11   12   16   17   24   28   31   33   34   39   44   47   51   55   58   62 
LCS_GDT     L     289     L     289      7    8   25     4    7    7    8   11   12   16   17   24   28   31   33   34   39   44   47   51   55   58   62 
LCS_GDT     T     290     T     290      3    8   17     3    3    3    3    9   10   11   13   16   17   23   29   31   36   40   45   49   52   58   62 
LCS_GDT     F     291     F     291      3    3   17     3    3    3    3    7    7    9   14   15   17   21   26   34   37   41   43   47   50   55   62 
LCS_GDT     V     292     V     292      3    4   20     3    3    5    7   12   12   13   15   19   24   32   35   37   42   46   49   51   55   59   62 
LCS_GDT     K     293     K     293      3    5   20     3    3    3    4    6   10   13   15   19   24   32   35   37   42   46   49   51   55   59   61 
LCS_GDT     S     294     S     294      4    5   20     3    4    4    4    5    6   11   16   19   24   28   35   37   42   46   49   50   55   59   61 
LCS_GDT     L     295     L     295      4    5   20     3    4    4    4    6    7   11   14   16   21   27   35   37   42   46   49   50   55   59   61 
LCS_GDT     R     296     R     296      4    5   20     3    4    4    4    5    7   11   16   19   24   28   35   37   42   46   49   50   54   58   61 
LCS_GDT     T     297     T     297      4    5   20     3    4    4    5    6    6    9   13   18   22   28   35   37   42   46   49   50   53   56   60 
LCS_GDT     E     298     E     298      4    5   20     3    3    4    4    5    6   11   16   18   24   28   35   37   42   46   49   50   53   58   60 
LCS_GDT     Y     299     Y     299      4    4   20     3    3    4    4    4    6    9   14   16   22   28   35   37   42   46   49   50   55   59   61 
LCS_GDT     G     300     G     300      4    4   24     3    3    4    5    8   10   11   15   19   24   28   35   37   42   46   49   51   55   59   61 
LCS_GDT     D     301     D     301      3    6   25     3    3    4    6    8   10   11   15   27   30   34   39   40   47   51   54   56   67   70   74 
LCS_GDT     L     302     L     302      3    9   25     3    3    5    9   16   20   26   30   35   40   43   48   52   58   61   68   72   76   80   83 
LCS_GDT     E     303     E     303      3    9   25     0    3    4    6    8   11   22   29   34   39   43   49   52   58   61   68   71   76   80   82 
LCS_GDT     L     304     L     304      5    9   25     3    4    6    7   11   20   24   29   32   40   44   49   52   58   61   68   71   76   80   85 
LCS_GDT     C     305     C     305      5    9   25     3    4    6    8   16   21   23   24   27   30   35   38   42   46   52   57   61   66   70   73 
LCS_GDT     I     306     I     306      5    9   25     3    4    6    8   12   14   19   23   27   31   36   40   49   55   60   64   65   67   72   77 
LCS_GDT     E     307     E     307      5    9   25     3    4    6    8   12   14   19   23   29   34   39   45   49   55   60   64   65   67   70   73 
LCS_GDT     V     308     V     308      5    9   25     3    4    6    8   12   14   19   23   31   41   47   54   57   61   63   64   70   71   73   77 
LCS_GDT     V     309     V     309      5    9   26     3    4    6    8   12   13   17   23   27   34   47   54   57   61   63   64   70   71   73   77 
LCS_GDT     D     310     D     310      4    9   26     3    3    6    8   12   15   30   32   38   41   50   54   57   61   63   65   70   74   76   80 
LCS_GDT     N     311     N     311      4   13   28     3    3    6   12   18   23   30   35   41   48   54   57   60   63   68   71   74   82   87   88 
LCS_GDT     V     312     V     312     11   13   28    10   10   11   14   16   25   30   35   41   48   54   57   60   63   68   72   78   85   87   89 
LCS_GDT     Q     313     Q     313     11   13   28    10   10   11   14   16   23   30   34   38   42   50   54   57   61   64   69   71   74   79   81 
LCS_GDT     D     314     D     314     11   13   28    10   10   11   14   15   23   27   32   36   42   47   54   57   61   63   64   70   71   74   80 
LCS_GDT     A     315     A     315     11   13   28    10   10   11   14   15   23   28   32   38   42   50   54   57   61   63   69   71   74   81   84 
LCS_GDT     I     316     I     316     11   13   28    10   10   11   14   15   23   30   32   38   42   50   54   57   61   63   67   70   74   79   81 
LCS_GDT     D     317     D     317     11   13   28    10   10   11   14   15   18   27   32   36   42   44   50   51   55   60   64   65   69   71   75 
LCS_GDT     H     318     H     318     11   13   28    10   10   11   14   15   18   21   31   36   42   44   50   51   55   60   64   65   68   71   75 
LCS_GDT     I     319     I     319     11   13   28    10   10   11   14   15   23   30   32   36   42   44   50   51   61   63   64   70   71   79   79 
LCS_GDT     H     320     H     320     11   13   28    10   10   11   14   15   18   19   23   33   39   44   50   51   53   57   59   65   68   70   73 
LCS_GDT     K     321     K     321     11   13   28    10   10   11   14   15   18   19   23   27   32   39   43   46   53   56   59   64   68   70   72 
LCS_GDT     Y     322     Y     322     11   13   29     3    4   10   11   14   16   19   23   27   29   31   37   43   48   50   55   61   68   70   72 
LCS_GDT     G     323     G     323      4   13   36     3    6   11   14   16   20   23   31   36   42   44   50   51   55   60   64   66   68   72   77 
LCS_GDT     S     324     S     324      4   13   36     3    8   14   15   19   21   27   32   39   43   46   53   56   58   64   68   71   75   81   82 
LCS_GDT     S     325     S     325      4   14   36     3    5    8   15   22   27   37   41   45   51   55   58   61   66   68   74   79   80   83   88 
LCS_GDT     H     326     H     326      3   16   36     3    5    8   14   23   26   36   41   45   51   55   58   64   67   70   74   79   80   83   89 
LCS_GDT     T     327     T     327      5   17   36     3    6    8   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     D     328     D     328      6   18   36     3    6   10   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     V     329     V     329      6   19   36     3    6    9   17   26   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     I     330     I     330     11   19   36     3    7   14   16   25   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     V     331     V     331     11   19   36     4    7   14   15   19   23   33   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     T     332     T     332     11   19   36     4    8   14   15   19   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     E     333     E     333     13   19   36     3    6    9   14   19   22   28   34   49   55   59   61   64   69   73   75   81   82   86   89 
LCS_GDT     D     334     D     334     13   19   36     7   13   14   15   19   22   28   34   42   54   59   61   64   69   73   75   79   82   86   88 
LCS_GDT     E     335     E     335     13   19   36     9   13   14   15   19   22   28   33   41   48   52   58   62   67   70   75   79   81   84   86 
LCS_GDT     N     336     N     336     13   19   36     9   13   14   15   19   22   28   33   41   48   53   58   64   68   73   75   81   82   86   88 
LCS_GDT     T     337     T     337     13   19   36     9   13   14   15   19   23   28   34   49   55   59   61   64   69   73   77   81   85   86   89 
LCS_GDT     A     338     A     338     13   19   36     9   13   14   15   19   23   28   37   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     E     339     E     339     13   19   36     9   13   14   15   19   23   29   35   43   50   54   59   64   69   73   77   81   85   86   89 
LCS_GDT     F     340     F     340     13   19   36     9   13   14   15   20   26   35   40   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     F     341     F     341     13   19   36     9   13   14   17   26   32   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     L     342     L     342     13   19   36     9   13   14   15   19   30   35   39   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     Q     343     Q     343     13   19   36     9   13   14   17   26   32   36   41   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     H     344     H     344     13   19   36     9   13   14   15   23   31   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     V     345     V     345     13   19   36     3   13   14   15   23   28   38   46   49   55   59   61   64   69   73   74   80   85   87   89 
LCS_GDT     D     346     D     346     13   19   36     3    5   14   14   23   28   37   42   47   51   55   58   64   67   70   74   79   80   87   88 
LCS_GDT     S     347     S     347      6   19   36     3    5   10   15   19   27   38   46   49   55   59   61   64   69   73   74   79   85   87   89 
LCS_GDT     A     348     A     348      6    8   36     3    6    9   12   19   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     C     349     C     349      6    8   36     3    5   11   17   26   32   36   41   46   50   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     V     350     V     350      6    8   36     3    5   11   17   26   32   36   41   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     F     351     F     351      6    8   36     3    5    8    9   12   19   29   39   44   49   54   59   64   69   73   77   81   85   87   89 
LCS_GDT     W     352     W     352      6    8   36     3    5    6    8   13   18   26   34   41   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     N     353     N     353      5    8   36     3    4    5    6   10   26   36   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     A     354     A     354      5    8   36     3    4    5    7   10   15   25   30   42   50   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     S     355     S     355      5    8   36     3    4    6    9   20   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     T     356     T     356      5    6   36     3    4    5   13   20   31   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     R     357     R     357      5    6   36     3    6   10   15   23   28   38   46   49   55   59   61   64   69   73   77   81   85   87   89 
LCS_GDT     F     358     F     358      3    5   36     3    5    8   14   20   27   31   44   48   51   55   57   64   65   72   77   81   85   87   89 
LCS_GDT     S     359     S     359      0    5   36     1    6    8   13   21   27   31   40   47   51   55   57   61   63   68   72   78   85   87   89 
LCS_AVERAGE  LCS_A:  13.07  (   5.09    8.77   25.36 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     14     17     26     32     38     46     49     55     59     61     64     69     73     77     81     85     87     89 
GDT PERCENT_CA   7.64   9.03   9.72  11.81  18.06  22.22  26.39  31.94  34.03  38.19  40.97  42.36  44.44  47.92  50.69  53.47  56.25  59.03  60.42  61.81
GDT RMS_LOCAL    0.23   0.49   0.71   1.47   1.85   2.14   2.61   2.89   3.20   3.42   3.59   3.69   3.90   4.44   4.70   5.10   5.34   5.69   5.92   6.00
GDT RMS_ALL_CA  20.22  15.59  15.59  15.18  15.12  15.07  18.14  18.30  18.44  18.54  18.64  18.55  18.56  17.72  17.55  15.91  16.09  15.89  15.79  15.76

#      Molecule1      Molecule2       DISTANCE
LGA    E     216      E     216         10.556
LGA    G     217      G     217          5.730
LGA    I     218      I     218          5.025
LGA    C     219      C     219          3.352
LGA    H     220      H     220          1.914
LGA    M     221      M     221          1.926
LGA    Y     222      Y     222          2.835
LGA    V     223      V     223          2.134
LGA    D     224      D     224          2.282
LGA    S     225      S     225          2.534
LGA    E     226      E     226          2.794
LGA    A     227      A     227          3.103
LGA    S     228      S     228          3.996
LGA    V     229      V     229          4.207
LGA    D     230      D     230          3.642
LGA    K     231      K     231          1.843
LGA    V     232      V     232          3.350
LGA    T     233      T     233          2.866
LGA    R     234      R     234          1.900
LGA    L     235      L     235          2.776
LGA    V     236      V     236          2.406
LGA    R     237      R     237          0.863
LGA    D     238      D     238          3.070
LGA    S     239      S     239          3.710
LGA    K     240      K     240          1.782
LGA    C     241      C     241          1.630
LGA    E     242      E     242          2.904
LGA    Y     243      Y     243          2.158
LGA    P     244      P     244          2.338
LGA    A     245      A     245          2.743
LGA    A     246      A     246          3.350
LGA    C     247      C     247          3.996
LGA    N     248      N     248          2.817
LGA    A     249      A     249          2.247
LGA    L     250      L     250          1.641
LGA    E     251      E     251          5.839
LGA    T     252      T     252          7.626
LGA    L     253      L     253          7.182
LGA    L     254      L     254          8.280
LGA    I     255      I     255          7.812
LGA    H     256      H     256         10.756
LGA    R     257      R     257         16.104
LGA    D     258      D     258         15.947
LGA    L     259      L     259         15.520
LGA    L     260      L     260         18.536
LGA    R     261      R     261         20.535
LGA    T     262      T     262         19.890
LGA    P     263      P     263         18.732
LGA    L     264      L     264         14.919
LGA    F     265      F     265         16.327
LGA    D     266      D     266         19.645
LGA    Q     267      Q     267         16.201
LGA    I     268      I     268         12.369
LGA    I     269      I     269         16.321
LGA    D     270      D     270         17.575
LGA    M     271      M     271         12.414
LGA    L     272      L     272         11.267
LGA    R     273      R     273         15.525
LGA    V     274      V     274         14.010
LGA    E     275      E     275         14.887
LGA    Q     276      Q     276         20.633
LGA    V     277      V     277         23.182
LGA    K     278      K     278         27.501
LGA    I     279      I     279         27.804
LGA    H     280      H     280         31.452
LGA    A     281      A     281         33.900
LGA    G     282      G     282         35.451
LGA    P     283      P     283         39.848
LGA    K     284      K     284         34.393
LGA    F     285      F     285         35.244
LGA    A     286      A     286         41.393
LGA    S     287      S     287         40.238
LGA    Y     288      Y     288         36.576
LGA    L     289      L     289         41.543
LGA    T     290      T     290         45.628
LGA    F     291      F     291         42.521
LGA    V     292      V     292         39.646
LGA    K     293      K     293         44.512
LGA    S     294      S     294         40.220
LGA    L     295      L     295         36.424
LGA    R     296      R     296         39.889
LGA    T     297      T     297         39.041
LGA    E     298      E     298         33.288
LGA    Y     299      Y     299         34.122
LGA    G     300      G     300         28.087
LGA    D     301      D     301         23.848
LGA    L     302      L     302         19.841
LGA    E     303      E     303         20.317
LGA    L     304      L     304         17.430
LGA    C     305      C     305         21.507
LGA    I     306      I     306         19.920
LGA    E     307      E     307         20.924
LGA    V     308      V     308         20.701
LGA    V     309      V     309         21.492
LGA    D     310      D     310         20.454
LGA    N     311      N     311         13.600
LGA    V     312      V     312          9.873
LGA    Q     313      Q     313         15.375
LGA    D     314      D     314         17.178
LGA    A     315      A     315         12.851
LGA    I     316      I     316         14.237
LGA    D     317      D     317         19.436
LGA    H     318      H     318         18.174
LGA    I     319      I     319         14.770
LGA    H     320      H     320         19.307
LGA    K     321      K     321         22.408
LGA    Y     322      Y     322         21.710
LGA    G     323      G     323         14.813
LGA    S     324      S     324         11.816
LGA    S     325      S     325          6.826
LGA    H     326      H     326          7.000
LGA    T     327      T     327          2.847
LGA    D     328      D     328          3.789
LGA    V     329      V     329          3.059
LGA    I     330      I     330          3.112
LGA    V     331      V     331          3.949
LGA    T     332      T     332          3.383
LGA    E     333      E     333          6.692
LGA    D     334      D     334          8.250
LGA    E     335      E     335         11.833
LGA    N     336      N     336         12.010
LGA    T     337      T     337          7.702
LGA    A     338      A     338          6.899
LGA    E     339      E     339          9.798
LGA    F     340      F     340          7.633
LGA    F     341      F     341          3.223
LGA    L     342      L     342          6.476
LGA    Q     343      Q     343          7.036
LGA    H     344      H     344          3.061
LGA    V     345      V     345          2.484
LGA    D     346      D     346          5.275
LGA    S     347      S     347          3.691
LGA    A     348      A     348          3.528
LGA    C     349      C     349          7.048
LGA    V     350      V     350          5.524
LGA    F     351      F     351          8.139
LGA    W     352      W     352          6.397
LGA    N     353      N     353          3.957
LGA    A     354      A     354          5.642
LGA    S     355      S     355          3.243
LGA    T     356      T     356          3.161
LGA    R     357      R     357          1.596
LGA    F     358      F     358          4.953
LGA    S     359      S     359          5.764

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  144  144    4.0     46    2.89    26.562    22.816     1.537

LGA_LOCAL      RMSD =  2.893  Number of atoms =   46  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.285  Number of atoms =  144 
Std_ALL_ATOMS  RMSD = 13.562  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.916668 * X  +  -0.328706 * Y  +   0.227315 * Z  + 138.539383
  Y_new =   0.240305 * X  +   0.907818 * Y  +   0.343687 * Z  +   4.396999
  Z_new =  -0.319332 * X  +  -0.260422 * Y  +   0.911157 * Z  +  25.298510 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.278392    2.863200  [ DEG:   -15.9507    164.0493 ]
  Theta =   0.325025    2.816568  [ DEG:    18.6225    161.3775 ]
  Phi   =   0.256381   -2.885211  [ DEG:    14.6896   -165.3104 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0310TS168_4-D2                               
REMARK     2: T0310_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0310TS168_4-D2.T0310_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  144  144   4.0   46   2.89  22.816    13.56
REMARK  ---------------------------------------------------------- 
MOLECULE T0310TS168_4-D2
PFRMAT TS
TARGET T0310
MODEL 4
PARENT N/A
ATOM    216  CA  GLU   216     137.578   7.991  26.942  1.00 25.00           C
ATOM    217  CA  GLY   217     137.434  11.387  25.136  1.00 25.00           C
ATOM    218  CA  ILE   218     135.468  14.089  23.321  1.00 25.00           C
ATOM    219  CA  CYS   219     137.121  16.566  25.705  1.00 25.00           C
ATOM    220  CA  HIS   220     138.655  20.019  25.482  1.00 25.00           C
ATOM    221  CA  MET   221     139.390  23.772  25.700  1.00 25.00           C
ATOM    222  CA  TYR   222     139.874  27.131  27.418  1.00 25.00           C
ATOM    223  CA  VAL   223     138.005  28.666  30.342  1.00 25.00           C
ATOM    224  CA  ASP   224     138.627  32.046  31.818  1.00 25.00           C
ATOM    225  CA  SER   225     139.732  35.659  32.127  1.00 25.00           C
ATOM    226  CA  GLU   226     139.553  35.157  35.855  1.00 25.00           C
ATOM    227  CA  ALA   227     140.209  31.717  37.493  1.00 25.00           C
ATOM    228  CA  SER   228     140.809  28.176  36.338  1.00 25.00           C
ATOM    229  CA  VAL   229     144.496  28.048  35.683  1.00 25.00           C
ATOM    230  CA  ASP   230     148.053  28.430  34.315  1.00 25.00           C
ATOM    231  CA  LYS   231     149.066  25.119  35.951  1.00 25.00           C
ATOM    232  CA  VAL   232     146.010  23.397  34.412  1.00 25.00           C
ATOM    233  CA  THR   233     146.913  24.816  30.971  1.00 25.00           C
ATOM    234  CA  ARG   234     150.508  23.555  31.367  1.00 25.00           C
ATOM    235  CA  LEU   235     149.211  20.084  32.331  1.00 25.00           C
ATOM    236  CA  VAL   236     146.920  20.060  29.263  1.00 25.00           C
ATOM    237  CA  ARG   237     149.866  21.051  27.024  1.00 25.00           C
ATOM    238  CA  ASP   238     151.987  18.241  28.532  1.00 25.00           C
ATOM    239  CA  SER   239     149.158  15.736  27.908  1.00 25.00           C
ATOM    240  CA  LYS   240     148.873  16.926  24.278  1.00 25.00           C
ATOM    241  CA  CYS   241     152.584  15.974  23.912  1.00 25.00           C
ATOM    242  CA  GLU   242     152.464  12.168  24.194  1.00 25.00           C
ATOM    243  CA  TYR   243     150.090  10.835  21.478  1.00 25.00           C
ATOM    244  CA  PRO   244     150.320  13.602  18.941  1.00 25.00           C
ATOM    245  CA  ALA   245     146.628  12.935  18.724  1.00 25.00           C
ATOM    246  CA  ALA   246     144.418   9.819  18.293  1.00 25.00           C
ATOM    247  CA  CYS   247     144.895   8.571  21.864  1.00 25.00           C
ATOM    248  CA  ASN   248     143.124  10.205  24.807  1.00 25.00           C
ATOM    249  CA  ALA   249     141.740  13.217  22.971  1.00 25.00           C
ATOM    250  CA  LEU   250     141.959  16.873  24.020  1.00 25.00           C
ATOM    251  CA  GLU   251     143.871  19.994  24.884  1.00 25.00           C
ATOM    252  CA  THR   252     144.329  23.363  26.461  1.00 25.00           C
ATOM    253  CA  LEU   253     142.826  24.259  29.832  1.00 25.00           C
ATOM    254  CA  LEU   254     143.141  28.035  30.496  1.00 25.00           C
ATOM    255  CA  ILE   255     144.388  31.496  31.399  1.00 25.00           C
ATOM    256  CA  HIS   256     144.793  32.416  35.077  1.00 25.00           C
ATOM    257  CA  ARG   257     145.692  32.124  38.759  1.00 25.00           C
ATOM    258  CA  ASP   258     144.063  31.513  42.171  1.00 25.00           C
ATOM    259  CA  LEU   259     143.858  27.761  41.428  1.00 25.00           C
ATOM    260  CA  LEU   260     147.554  27.732  40.426  1.00 25.00           C
ATOM    261  CA  ARG   261     148.472  29.550  43.670  1.00 25.00           C
ATOM    262  CA  THR   262     146.453  27.004  45.697  1.00 25.00           C
ATOM    263  CA  PRO   263     148.786  24.219  44.567  1.00 25.00           C
ATOM    264  CA  LEU   264     150.048  22.724  41.368  1.00 25.00           C
ATOM    265  CA  PHE   265     153.125  24.382  39.804  1.00 25.00           C
ATOM    266  CA  ASP   266     155.257  21.331  40.706  1.00 25.00           C
ATOM    267  CA  GLN   267     152.648  19.011  39.134  1.00 25.00           C
ATOM    268  CA  ILE   268     152.630  21.146  35.954  1.00 25.00           C
ATOM    269  CA  ILE   269     156.455  21.002  35.808  1.00 25.00           C
ATOM    270  CA  ASP   270     156.352  17.196  36.215  1.00 25.00           C
ATOM    271  CA  MET   271     153.773  16.939  33.397  1.00 25.00           C
ATOM    272  CA  LEU   272     155.979  19.113  31.145  1.00 25.00           C
ATOM    273  CA  ARG   273     159.002  16.892  31.922  1.00 25.00           C
ATOM    274  CA  VAL   274     156.954  13.768  31.081  1.00 25.00           C
ATOM    275  CA  GLU   275     155.907  10.159  31.709  1.00 25.00           C
ATOM    276  CA  GLN   276     153.194   8.273  33.684  1.00 25.00           C
ATOM    277  CA  VAL   277     151.176   8.641  36.837  1.00 25.00           C
ATOM    278  CA  LYS   278     147.954   9.897  38.373  1.00 25.00           C
ATOM    279  CA  ILE   279     145.769  12.651  39.818  1.00 25.00           C
ATOM    280  CA  HIS   280     142.368  11.951  41.314  1.00 25.00           C
ATOM    281  CA  ALA   281     139.109  11.933  43.136  1.00 25.00           C
ATOM    282  CA  GLY   282     136.369  12.797  45.582  1.00 25.00           C
ATOM    283  CA  PRO   283     135.591  14.969  48.607  1.00 25.00           C
ATOM    284  CA  LYS   284     137.521  17.248  46.209  1.00 25.00           C
ATOM    285  CA  PHE   285     139.881  18.274  49.045  1.00 25.00           C
ATOM    286  CA  ALA   286     140.452  14.593  49.934  1.00 25.00           C
ATOM    287  CA  SER   287     141.214  13.799  46.266  1.00 25.00           C
ATOM    288  CA  TYR   288     143.700  16.710  46.127  1.00 25.00           C
ATOM    289  CA  LEU   289     145.395  15.447  49.320  1.00 25.00           C
ATOM    290  CA  THR   290     145.642  11.929  47.826  1.00 25.00           C
ATOM    291  CA  PHE   291     147.182  13.368  44.628  1.00 25.00           C
ATOM    292  CA  VAL   292     149.722  15.340  46.709  1.00 25.00           C
ATOM    293  CA  LYS   293     150.621  12.170  48.660  1.00 25.00           C
ATOM    294  CA  SER   294     151.089  10.252  45.378  1.00 25.00           C
ATOM    295  CA  LEU   295     153.348  13.042  44.042  1.00 25.00           C
ATOM    296  CA  ARG   296     155.416  12.944  47.265  1.00 25.00           C
ATOM    297  CA  THR   297     155.759   9.142  46.957  1.00 25.00           C
ATOM    298  CA  GLU   298     156.893   9.515  43.318  1.00 25.00           C
ATOM    299  CA  TYR   299     159.477  12.141  44.366  1.00 25.00           C
ATOM    300  CA  GLY   300     157.847  13.593  41.224  1.00 25.00           C
ATOM    301  CA  ASP   301     154.773  12.796  39.056  1.00 25.00           C
ATOM    302  CA  LEU   302     152.059  13.601  36.517  1.00 25.00           C
ATOM    303  CA  GLU   303     148.622  13.603  34.882  1.00 25.00           C
ATOM    304  CA  LEU   304     145.419  14.997  33.389  1.00 25.00           C
ATOM    305  CA  CYS   305     142.610  14.564  35.949  1.00 25.00           C
ATOM    306  CA  ILE   306     141.455  18.088  36.648  1.00 25.00           C
ATOM    307  CA  GLU   307     139.750  20.998  38.382  1.00 25.00           C
ATOM    308  CA  VAL   308     139.936  24.265  40.332  1.00 25.00           C
ATOM    309  CA  VAL   309     138.431  26.205  43.285  1.00 25.00           C
ATOM    310  CA  ASP   310     135.325  28.231  43.947  1.00 25.00           C
ATOM    311  CA  ASN   311     133.332  29.349  40.912  1.00 25.00           C
ATOM    312  CA  VAL   312     131.015  27.018  38.925  1.00 25.00           C
ATOM    313  CA  GLN   313     130.033  24.735  41.840  1.00 25.00           C
ATOM    314  CA  ASP   314     127.151  23.292  39.771  1.00 25.00           C
ATOM    315  CA  ALA   315     129.538  22.655  36.844  1.00 25.00           C
ATOM    316  CA  ILE   316     131.994  20.899  39.199  1.00 25.00           C
ATOM    317  CA  ASP   317     129.158  18.725  40.577  1.00 25.00           C
ATOM    318  CA  HIS   318     128.091  17.816  37.013  1.00 25.00           C
ATOM    319  CA  ILE   319     131.702  16.885  36.142  1.00 25.00           C
ATOM    320  CA  HIS   320     131.920  14.697  39.277  1.00 25.00           C
ATOM    321  CA  LYS   321     128.637  12.968  38.330  1.00 25.00           C
ATOM    322  CA  TYR   322     130.672  10.637  36.118  1.00 25.00           C
ATOM    323  CA  GLY   323     129.715  12.397  32.855  1.00 25.00           C
ATOM    324  CA  SER   324     129.144  10.015  29.944  1.00 25.00           C
ATOM    325  CA  SER   325     132.303   9.634  27.838  1.00 25.00           C
ATOM    326  CA  HIS   326     134.755  10.151  30.643  1.00 25.00           C
ATOM    327  CA  THR   327     135.000  13.667  29.268  1.00 25.00           C
ATOM    328  CA  ASP   328     136.580  16.827  30.753  1.00 25.00           C
ATOM    329  CA  VAL   329     135.236  19.854  32.491  1.00 25.00           C
ATOM    330  CA  ILE   330     133.914  23.332  33.244  1.00 25.00           C
ATOM    331  CA  VAL   331     136.217  25.501  35.335  1.00 25.00           C
ATOM    332  CA  THR   332     135.827  29.268  34.876  1.00 25.00           C
ATOM    333  CA  GLU   333     134.360  32.363  36.502  1.00 25.00           C
ATOM    334  CA  ASP   334     134.588  34.878  33.664  1.00 25.00           C
ATOM    335  CA  GLU   335     130.850  35.408  33.800  1.00 25.00           C
ATOM    336  CA  ASN   336     129.493  34.727  30.284  1.00 25.00           C
ATOM    337  CA  THR   337     131.985  31.850  29.854  1.00 25.00           C
ATOM    338  CA  ALA   338     130.916  30.387  33.229  1.00 25.00           C
ATOM    339  CA  GLU   339     127.236  30.629  32.196  1.00 25.00           C
ATOM    340  CA  PHE   340     128.023  28.864  28.890  1.00 25.00           C
ATOM    341  CA  PHE   341     129.870  26.092  30.781  1.00 25.00           C
ATOM    342  CA  LEU   342     126.882  25.677  33.139  1.00 25.00           C
ATOM    343  CA  GLN   343     124.513  25.450  30.138  1.00 25.00           C
ATOM    344  CA  HIS   344     126.765  22.801  28.531  1.00 25.00           C
ATOM    345  CA  VAL   345     126.737  19.751  30.760  1.00 25.00           C
ATOM    346  CA  ASP   346     126.103  16.442  32.459  1.00 25.00           C
ATOM    347  CA  SER   347     126.996  14.788  29.133  1.00 25.00           C
ATOM    348  CA  ALA   348     129.210  13.847  26.171  1.00 25.00           C
ATOM    349  CA  CYS   349     130.877  17.169  25.296  1.00 25.00           C
ATOM    350  CA  VAL   350     132.195  19.882  27.649  1.00 25.00           C
ATOM    351  CA  PHE   351     134.460  22.910  28.164  1.00 25.00           C
ATOM    352  CA  TRP   352     137.410  23.654  30.487  1.00 25.00           C
ATOM    353  CA  ASN   353     140.188  21.752  32.340  1.00 25.00           C
ATOM    354  CA  ALA   354     141.503  19.404  29.643  1.00 25.00           C
ATOM    355  CA  SER   355     142.194  15.780  28.745  1.00 25.00           C
ATOM    356  CA  THR   356     141.234  12.155  29.495  1.00 25.00           C
ATOM    357  CA  ARG   357     145.035  11.683  29.552  1.00 25.00           C
ATOM    358  CA  PHE   358     144.606   7.943  28.848  1.00 25.00           C
ATOM    359  CA  SER   359     142.636   4.720  28.807  1.00 25.00           C
TER
END
