
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  144 (  144),  selected  144 , name T0310TS168_5-D2
# Molecule2: number of CA atoms  144 ( 1137),  selected  144 , name T0310_D2.pdb
# PARAMETERS: T0310TS168_5-D2.T0310_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144       216 - 359         4.65     4.65
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    58       302 - 359         1.89     4.84
  LCS_AVERAGE:     23.60

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35       325 - 359         1.00     5.03
  LCS_AVERAGE:     10.38

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     E     216     E     216      7   28  144     2    5   17   55   74   90   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     G     217     G     217      9   28  144     7   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     218     I     218      9   28  144     5   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     C     219     C     219      9   28  144     6   25   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     H     220     H     220      9   28  144     6   24   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     M     221     M     221      9   28  144     5   16   36   68   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     Y     222     Y     222      9   28  144     5   16   45   68   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     223     V     223      9   28  144    10   26   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     224     D     224      9   28  144    12   24   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     225     S     225      9   28  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     226     E     226      8   28  144     4   33   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     227     A     227      5   28  144     3   24   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     228     S     228     12   28  144     4   15   38   62   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     229     V     229     14   28  144     5   18   42   64   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     230     D     230     14   28  144     6   18   41   62   82   91   97  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     K     231     K     231     14   28  144     4   24   48   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     232     V     232     14   28  144     9   24   51   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     T     233     T     233     14   28  144     6   24   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     R     234     R     234     14   28  144     6   18   49   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     235     L     235     14   28  144     6   24   51   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     236     V     236     14   28  144     6   21   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     R     237     R     237     14   28  144     6   29   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     238     D     238     14   28  144     5   20   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     239     S     239     14   28  144     5   24   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     K     240     K     240     14   28  144     6   11   36   59   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     C     241     C     241     14   28  144     5   23   47   64   82   90   98  104  107  112  117  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     242     E     242     14   28  144     7   23   41   60   79   89   98  104  107  112  117  123  126  129  130  131  135  136  138  138 
LCS_GDT     Y     243     Y     243     13   28  144     3    9   34   50   73   86   96  104  107  111  117  123  126  129  130  131  135  136  138  138 
LCS_GDT     P     244     P     244     12   25  144     3    4    9   15   33   48   83   98  107  109  113  118  124  129  130  131  132  134  138  138 
LCS_GDT     A     245     A     245      4   25  144     3    4    7   32   64   86   96  104  107  110  116  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     246     A     246      4   25  144     3   10   30   54   76   86   97  104  107  112  117  123  126  129  130  131  135  136  138  138 
LCS_GDT     C     247     C     247      4   25  144     3    4   11   15   50   85   96  104  107  111  117  123  126  129  130  131  135  136  138  138 
LCS_GDT     N     248     N     248      3   23  144     5   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     249     A     249      3   23  144     3   28   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     250     L     250      3   23  144     3    5   17   57   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     251     E     251      5   15  144     3    6   14   62   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     T     252     T     252      5   15  144     3    7   20   59   76   87   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     253     L     253      5   15  144     3    5   16   59   82   89   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     254     L     254      5   15  144     3   16   48   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     255     I     255      6   15  144     3    8   38   66   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     H     256     H     256      6   15  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     R     257     R     257      6   15  144    15   33   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     258     D     258      6   15  144     8   33   52   66   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     259     L     259      6   15  144     5   33   52   69   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     260     L     260      6   15  144     4   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     R     261     R     261      5   15  144     4   10   51   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     T     262     T     262      5   15  144     7   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     P     263     P     263     13   15  144     3    4   10   23   55   82   96  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     264     L     264     13   15  144    11   12   12   13   26   30   70   91  104  113  117  123  126  129  130  131  135  136  138  138 
LCS_GDT     F     265     F     265     13   15  144    11   12   16   25   36   71   92  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     266     D     266     13   15  144    11   12   24   46   68   84   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     Q     267     Q     267     13   15  144    11   12   12   19   31   41   75   98  104  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     268     I     268     13   15  144    11   12   12   16   32   48   79   91  106  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     269     I     269     13   15  144    11   12   12   18   54   83   97  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     270     D     270     13   15  144    11   12   12   17   54   65   85  100  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     M     271     M     271     13   15  144    11   12   12   19   39   56   75   98  104  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     272     L     272     13   15  144    11   12   12   13   25   48   81   98  106  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     R     273     R     273     13   15  144    11   12   12   55   77   90   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     274     V     274     13   15  144    11   12   12   18   31   62   85   98  104  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     275     E     275     13   15  144     3   12   13   25   42   61   75   94  104  112  118  122  126  129  130  131  135  136  138  138 
LCS_GDT     Q     276     Q     276      5   15  144     0    5    5   12   44   60   75   94  104  112  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     277     V     277      5   10  144     3    6   18   35   50   70   87   96  106  112  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     K     278     K     278      5   10  144     3    5    6   21   34   61   77   96  103  109  118  122  126  128  130  131  135  136  138  138 
LCS_GDT     I     279     I     279      5   10  144     3    4   12   21   48   69   86   97  103  112  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     H     280     H     280      5   10  144     3    4    8   11   18   24   30   39   85   97  103  112  121  126  129  131  135  136  138  138 
LCS_GDT     A     281     A     281      5   10  144     3    4    5   11   18   24   37   57   85   91  103  111  121  126  129  131  135  136  138  138 
LCS_GDT     G     282     G     282      5   10  144     3    4    5    7   16   24   32   42   51   56   69   85  104  122  124  130  133  136  138  138 
LCS_GDT     P     283     P     283      7   10  144     5    7    9    9   18   29   42   56   74   92  103  112  121  126  128  131  135  136  138  138 
LCS_GDT     K     284     K     284      7   10  144     5    7   30   50   66   84   95  102  106  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     F     285     F     285      7   10  144     5    7    9   17   24   33   56   84   97  107  115  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     286     A     286      7    8  144     5    7    9   31   50   72   88   98  106  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     287     S     287      7    8  144     5    7   15   60   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     Y     288     Y     288      7    8  144     4    7    9   23   30   48   69   85  102  111  117  123  126  129  130  131  134  135  137  138 
LCS_GDT     L     289     L     289      7    8  144     4    7    9   14   19   33   43   63   83  107  112  120  125  129  130  131  132  134  136  138 
LCS_GDT     T     290     T     290      3    8  144     3    3    8   11   27   37   49   67   89  107  111  120  125  129  130  131  132  134  136  138 
LCS_GDT     F     291     F     291      3    3  144     3    3    3    3    5    5    7    9   49   72   89  103  114  125  130  131  132  132  136  136 
LCS_GDT     V     292     V     292      3    4  144     4   10   36   60   78   89   97  103  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     K     293     K     293      3    5  144     4    5   14   35   48   69   84   97  103  109  118  121  125  128  129  131  135  136  138  138 
LCS_GDT     S     294     S     294      4    5  144     4    4    4    4    5    7   17   34   63   73   87  104  113  122  127  131  135  136  138  138 
LCS_GDT     L     295     L     295      4    5  144     3    4    4    4    4    6   20   29   38   49   92  109  119  122  128  131  135  136  138  138 
LCS_GDT     R     296     R     296      4    5  144     3    4    4    5    5    7   10   13   15   23   29   37   44   96  112  122  131  134  138  138 
LCS_GDT     T     297     T     297      4    6  144     3    4    4    5    5    7   11   14   20   23   29   35   39   54   70  116  122  128  135  137 
LCS_GDT     E     298     E     298      4    6  144     3    3    4    5    5    7   10   13   15   19   25   29   44   89  101  116  131  132  135  138 
LCS_GDT     Y     299     Y     299      4    6  144     3    3    4    7   12   19   29   39   56   81  104  115  122  126  128  131  135  136  138  138 
LCS_GDT     G     300     G     300      4    6  144     3    3    4    4    6   31   42   51   64   91  104  115  122  126  128  131  135  136  138  138 
LCS_GDT     D     301     D     301      3    6  144     3    3   12   21   34   56   75   88  101  112  118  122  125  128  130  131  135  136  138  138 
LCS_GDT     L     302     L     302      3   58  144     3   12   25   48   72   88   94  103  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     303     E     303      6   58  144     3    3   17   42   64   85   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     304     L     304      7   58  144     3    7   42   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     C     305     C     305      7   58  144     3   13   41   68   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     306     I     306      7   58  144     4   10   35   62   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     307     E     307      7   58  144     3   18   37   62   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     308     V     308      7   58  144     3   10   37   60   80   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     309     V     309      7   58  144     3    9   30   53   78   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     310     D     310      7   58  144     3    9   18   34   70   87   98  103  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     N     311     N     311      7   58  144     3    6   22   52   78   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     312     V     312     11   58  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     Q     313     Q     313     11   58  144    12   27   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     314     D     314     11   58  144    12   33   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     315     A     315     11   58  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     316     I     316     11   58  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     317     D     317     11   58  144    12   33   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     H     318     H     318     11   58  144    12   33   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     319     I     319     11   58  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     H     320     H     320     11   58  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     K     321     K     321     11   58  144    12   21   46   66   82   91   98  104  107  113  118  122  126  129  130  131  135  136  138  138 
LCS_GDT     Y     322     Y     322     11   58  144     3   21   46   64   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     G     323     G     323      3   58  144     3    4    4    6    8   32   76   98  106  112  118  122  126  129  130  131  135  136  138  138 
LCS_GDT     S     324     S     324     22   58  144     3    4    9   37   70   88   97  103  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     325     S     325     35   58  144     3   19   51   70   82   91   97  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     H     326     H     326     35   58  144     3   20   49   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     T     327     T     327     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     328     D     328     35   58  144     4   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     329     V     329     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     I     330     I     330     35   58  144    10   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     331     V     331     35   58  144    12   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     T     332     T     332     35   58  144     5   33   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     333     E     333     35   58  144    10   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     334     D     334     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     335     E     335     35   58  144    12   33   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     N     336     N     336     35   58  144    10   32   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     T     337     T     337     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     338     A     338     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     E     339     E     339     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     F     340     F     340     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     F     341     F     341     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     L     342     L     342     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     Q     343     Q     343     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     H     344     H     344     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     345     V     345     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     D     346     D     346     35   58  144     8   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     347     S     347     35   58  144     6   30   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     348     A     348     35   58  144     9   32   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     C     349     C     349     35   58  144     9   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     V     350     V     350     35   58  144     5   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     F     351     F     351     35   58  144     5   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     W     352     W     352     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     N     353     N     353     35   58  144    15   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     A     354     A     354     35   58  144     4   24   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     355     S     355     35   58  144     3   25   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     T     356     T     356     35   58  144     3   32   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     R     357     R     357     35   58  144     5   32   52   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     F     358     F     358     35   58  144     8   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_GDT     S     359     S     359     35   58  144     5   34   53   70   82   91   98  104  107  113  118  123  126  129  130  131  135  136  138  138 
LCS_AVERAGE  LCS_A:  44.66  (  10.38   23.60  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     34     53     70     82     91     98    104    107    113    118    123    126    129    130    131    135    136    138    138 
GDT PERCENT_CA  10.42  23.61  36.81  48.61  56.94  63.19  68.06  72.22  74.31  78.47  81.94  85.42  87.50  89.58  90.28  90.97  93.75  94.44  95.83  95.83
GDT RMS_LOCAL    0.37   0.72   1.04   1.25   1.47   1.69   1.90   2.10   2.17   2.57   2.82   3.05   3.13   3.33   3.39   3.44   3.85   3.94   4.11   4.02
GDT RMS_ALL_CA   5.07   5.04   4.88   4.88   4.97   4.82   4.91   5.01   4.84   4.78   4.73   4.80   4.80   4.87   4.85   4.83   4.66   4.66   4.66   4.68

#      Molecule1      Molecule2       DISTANCE
LGA    E     216      E     216          2.663
LGA    G     217      G     217          2.020
LGA    I     218      I     218          1.728
LGA    C     219      C     219          2.230
LGA    H     220      H     220          2.033
LGA    M     221      M     221          2.594
LGA    Y     222      Y     222          2.142
LGA    V     223      V     223          1.077
LGA    D     224      D     224          2.068
LGA    S     225      S     225          1.883
LGA    E     226      E     226          2.090
LGA    A     227      A     227          2.455
LGA    S     228      S     228          1.502
LGA    V     229      V     229          2.040
LGA    D     230      D     230          2.694
LGA    K     231      K     231          1.349
LGA    V     232      V     232          1.419
LGA    T     233      T     233          0.907
LGA    R     234      R     234          1.294
LGA    L     235      L     235          1.601
LGA    V     236      V     236          1.396
LGA    R     237      R     237          0.430
LGA    D     238      D     238          0.999
LGA    S     239      S     239          2.027
LGA    K     240      K     240          2.249
LGA    C     241      C     241          1.828
LGA    E     242      E     242          2.075
LGA    Y     243      Y     243          3.311
LGA    P     244      P     244          5.216
LGA    A     245      A     245          3.814
LGA    A     246      A     246          2.503
LGA    C     247      C     247          3.843
LGA    N     248      N     248          2.049
LGA    A     249      A     249          3.051
LGA    L     250      L     250          3.764
LGA    E     251      E     251          1.894
LGA    T     252      T     252          2.882
LGA    L     253      L     253          2.781
LGA    L     254      L     254          2.024
LGA    I     255      I     255          2.058
LGA    H     256      H     256          0.990
LGA    R     257      R     257          2.195
LGA    D     258      D     258          3.201
LGA    L     259      L     259          2.410
LGA    L     260      L     260          1.344
LGA    R     261      R     261          2.388
LGA    T     262      T     262          1.036
LGA    P     263      P     263          4.211
LGA    L     264      L     264          6.317
LGA    F     265      F     265          4.541
LGA    D     266      D     266          3.788
LGA    Q     267      Q     267          6.536
LGA    I     268      I     268          6.601
LGA    I     269      I     269          3.697
LGA    D     270      D     270          5.432
LGA    M     271      M     271          8.123
LGA    L     272      L     272          6.655
LGA    R     273      R     273          3.427
LGA    V     274      V     274          7.676
LGA    E     275      E     275          9.401
LGA    Q     276      Q     276          9.368
LGA    V     277      V     277          8.073
LGA    K     278      K     278          8.702
LGA    I     279      I     279          7.370
LGA    H     280      H     280         10.436
LGA    A     281      A     281         10.667
LGA    G     282      G     282         12.928
LGA    P     283      P     283         12.175
LGA    K     284      K     284          6.299
LGA    F     285      F     285          8.484
LGA    A     286      A     286          7.512
LGA    S     287      S     287          2.623
LGA    Y     288      Y     288          7.031
LGA    L     289      L     289          9.603
LGA    T     290      T     290          8.905
LGA    F     291      F     291         10.394
LGA    V     292      V     292          5.870
LGA    K     293      K     293          9.277
LGA    S     294      S     294         11.552
LGA    L     295      L     295          9.327
LGA    R     296      R     296         13.976
LGA    T     297      T     297         16.062
LGA    E     298      E     298         15.675
LGA    Y     299      Y     299         13.266
LGA    G     300      G     300         13.671
LGA    D     301      D     301         10.278
LGA    L     302      L     302          6.423
LGA    E     303      E     303          3.907
LGA    L     304      L     304          2.091
LGA    C     305      C     305          2.190
LGA    I     306      I     306          2.990
LGA    E     307      E     307          2.776
LGA    V     308      V     308          3.136
LGA    V     309      V     309          3.455
LGA    D     310      D     310          4.485
LGA    N     311      N     311          3.641
LGA    V     312      V     312          0.997
LGA    Q     313      Q     313          1.693
LGA    D     314      D     314          1.378
LGA    A     315      A     315          0.645
LGA    I     316      I     316          1.518
LGA    D     317      D     317          2.162
LGA    H     318      H     318          1.572
LGA    I     319      I     319          0.797
LGA    H     320      H     320          2.067
LGA    K     321      K     321          2.598
LGA    Y     322      Y     322          2.206
LGA    G     323      G     323          5.582
LGA    S     324      S     324          5.239
LGA    S     325      S     325          3.960
LGA    H     326      H     326          3.520
LGA    T     327      T     327          2.077
LGA    D     328      D     328          1.022
LGA    V     329      V     329          1.202
LGA    I     330      I     330          1.304
LGA    V     331      V     331          1.665
LGA    T     332      T     332          2.803
LGA    E     333      E     333          1.658
LGA    D     334      D     334          2.129
LGA    E     335      E     335          2.512
LGA    N     336      N     336          2.475
LGA    T     337      T     337          1.433
LGA    A     338      A     338          1.454
LGA    E     339      E     339          1.694
LGA    F     340      F     340          0.883
LGA    F     341      F     341          0.629
LGA    L     342      L     342          1.855
LGA    Q     343      Q     343          1.745
LGA    H     344      H     344          1.542
LGA    V     345      V     345          2.028
LGA    D     346      D     346          0.924
LGA    S     347      S     347          3.394
LGA    A     348      A     348          3.280
LGA    C     349      C     349          2.381
LGA    V     350      V     350          1.817
LGA    F     351      F     351          2.028
LGA    W     352      W     352          2.065
LGA    N     353      N     353          2.436
LGA    A     354      A     354          1.494
LGA    S     355      S     355          2.039
LGA    T     356      T     356          1.543
LGA    R     357      R     357          0.815
LGA    F     358      F     358          3.027
LGA    S     359      S     359          3.183

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  144  144    4.0    104    2.10    58.854    53.589     4.732

LGA_LOCAL      RMSD =  2.098  Number of atoms =  104  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.252  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  4.649  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.837873 * X  +  -0.304673 * Y  +  -0.452927 * Z  + 133.980591
  Y_new =  -0.461166 * X  +  -0.048840 * Y  +   0.885969 * Z  +   7.366328
  Z_new =  -0.292052 * X  +   0.951204 * Y  +  -0.099583 * Z  +  19.822031 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.675108   -1.466485  [ DEG:    95.9766    -84.0234 ]
  Theta =   0.296372    2.845221  [ DEG:    16.9808    163.0191 ]
  Phi   =  -2.638441    0.503151  [ DEG:  -151.1716     28.8284 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0310TS168_5-D2                               
REMARK     2: T0310_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0310TS168_5-D2.T0310_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  144  144   4.0  104   2.10  53.589     4.65
REMARK  ---------------------------------------------------------- 
MOLECULE T0310TS168_5-D2
PFRMAT TS
TARGET T0310
MODEL 5
PARENT N/A
ATOM    216  CA  GLU   216     134.037  11.690  17.683  1.00 25.00           C
ATOM    217  CA  GLY   217     137.518  13.201  17.764  1.00 25.00           C
ATOM    218  CA  ILE   218     135.895  16.635  17.940  1.00 25.00           C
ATOM    219  CA  CYS   219     136.361  18.280  21.324  1.00 25.00           C
ATOM    220  CA  HIS   220     136.250  21.624  23.111  1.00 25.00           C
ATOM    221  CA  MET   221     137.391  23.902  25.994  1.00 25.00           C
ATOM    222  CA  TYR   222     135.916  26.813  27.947  1.00 25.00           C
ATOM    223  CA  VAL   223     138.882  28.342  29.796  1.00 25.00           C
ATOM    224  CA  ASP   224     136.416  28.628  32.653  1.00 25.00           C
ATOM    225  CA  SER   225     137.394  32.249  33.428  1.00 25.00           C
ATOM    226  CA  GLU   226     139.820  30.820  35.988  1.00 25.00           C
ATOM    227  CA  ALA   227     142.476  28.130  36.301  1.00 25.00           C
ATOM    228  CA  SER   228     145.053  30.814  36.679  1.00 25.00           C
ATOM    229  CA  VAL   229     147.354  31.082  33.680  1.00 25.00           C
ATOM    230  CA  ASP   230     149.594  28.291  35.044  1.00 25.00           C
ATOM    231  CA  LYS   231     146.604  25.899  35.129  1.00 25.00           C
ATOM    232  CA  VAL   232     145.738  26.812  31.511  1.00 25.00           C
ATOM    233  CA  THR   233     149.365  26.178  30.458  1.00 25.00           C
ATOM    234  CA  ARG   234     149.306  22.776  32.218  1.00 25.00           C
ATOM    235  CA  LEU   235     146.036  21.883  30.437  1.00 25.00           C
ATOM    236  CA  VAL   236     147.567  22.886  27.072  1.00 25.00           C
ATOM    237  CA  ARG   237     150.642  20.721  27.799  1.00 25.00           C
ATOM    238  CA  ASP   238     148.380  17.761  28.687  1.00 25.00           C
ATOM    239  CA  SER   239     146.427  18.244  25.428  1.00 25.00           C
ATOM    240  CA  LYS   240     149.703  18.327  23.447  1.00 25.00           C
ATOM    241  CA  CYS   241     151.394  15.553  25.354  1.00 25.00           C
ATOM    242  CA  GLU   242     150.482  13.125  28.221  1.00 25.00           C
ATOM    243  CA  TYR   243     149.426   9.945  26.488  1.00 25.00           C
ATOM    244  CA  PRO   244     151.689  10.582  23.569  1.00 25.00           C
ATOM    245  CA  ALA   245     148.432  11.779  21.904  1.00 25.00           C
ATOM    246  CA  ALA   246     147.071   8.219  22.113  1.00 25.00           C
ATOM    247  CA  CYS   247     143.933   9.882  23.588  1.00 25.00           C
ATOM    248  CA  ASN   248     141.019  11.663  22.014  1.00 25.00           C
ATOM    249  CA  ALA   249     143.481  13.664  20.002  1.00 25.00           C
ATOM    250  CA  LEU   250     140.889  16.504  19.999  1.00 25.00           C
ATOM    251  CA  GLU   251     141.174  20.194  20.914  1.00 25.00           C
ATOM    252  CA  THR   252     141.151  23.611  22.584  1.00 25.00           C
ATOM    253  CA  LEU   253     142.670  26.299  24.781  1.00 25.00           C
ATOM    254  CA  LEU   254     139.724  28.700  24.517  1.00 25.00           C
ATOM    255  CA  ILE   255     140.180  32.433  24.573  1.00 25.00           C
ATOM    256  CA  HIS   256     138.297  33.031  27.757  1.00 25.00           C
ATOM    257  CA  ARG   257     138.560  36.816  27.642  1.00 25.00           C
ATOM    258  CA  ASP   258     140.839  36.791  30.720  1.00 25.00           C
ATOM    259  CA  LEU   259     143.084  34.166  29.065  1.00 25.00           C
ATOM    260  CA  LEU   260     143.269  36.292  25.886  1.00 25.00           C
ATOM    261  CA  ARG   261     144.205  39.367  27.966  1.00 25.00           C
ATOM    262  CA  THR   262     146.939  37.362  29.746  1.00 25.00           C
ATOM    263  CA  PRO   263     148.096  34.044  28.181  1.00 25.00           C
ATOM    264  CA  LEU   264     146.793  32.244  25.114  1.00 25.00           C
ATOM    265  CA  PHE   265     149.971  33.689  23.542  1.00 25.00           C
ATOM    266  CA  ASP   266     152.039  30.833  25.039  1.00 25.00           C
ATOM    267  CA  GLN   267     149.553  28.272  23.648  1.00 25.00           C
ATOM    268  CA  ILE   268     149.760  29.910  20.193  1.00 25.00           C
ATOM    269  CA  ILE   269     153.586  29.794  20.341  1.00 25.00           C
ATOM    270  CA  ASP   270     153.461  26.090  21.303  1.00 25.00           C
ATOM    271  CA  MET   271     151.091  25.385  18.379  1.00 25.00           C
ATOM    272  CA  LEU   272     153.450  27.226  15.990  1.00 25.00           C
ATOM    273  CA  ARG   273     156.412  25.184  17.302  1.00 25.00           C
ATOM    274  CA  VAL   274     154.435  21.944  16.793  1.00 25.00           C
ATOM    275  CA  GLU   275     152.004  22.726  13.961  1.00 25.00           C
ATOM    276  CA  GLN   276     149.530  25.344  12.748  1.00 25.00           C
ATOM    277  CA  VAL   277     148.595  28.550  14.571  1.00 25.00           C
ATOM    278  CA  LYS   278     147.544  32.048  15.420  1.00 25.00           C
ATOM    279  CA  ILE   279     144.515  32.656  17.649  1.00 25.00           C
ATOM    280  CA  HIS   280     143.203  36.274  17.734  1.00 25.00           C
ATOM    281  CA  ALA   281     141.916  39.424  19.334  1.00 25.00           C
ATOM    282  CA  GLY   282     139.179  42.012  19.705  1.00 25.00           C
ATOM    283  CA  PRO   283     135.441  42.677  19.890  1.00 25.00           C
ATOM    284  CA  LYS   284     134.862  38.943  20.510  1.00 25.00           C
ATOM    285  CA  PHE   285     133.035  38.644  17.159  1.00 25.00           C
ATOM    286  CA  ALA   286     135.930  40.424  15.393  1.00 25.00           C
ATOM    287  CA  SER   287     138.433  38.045  17.049  1.00 25.00           C
ATOM    288  CA  TYR   288     136.349  35.033  15.930  1.00 25.00           C
ATOM    289  CA  LEU   289     136.251  36.399  12.353  1.00 25.00           C
ATOM    290  CA  THR   290     140.050  36.878  12.406  1.00 25.00           C
ATOM    291  CA  PHE   291     140.510  33.288  13.655  1.00 25.00           C
ATOM    292  CA  VAL   292     138.232  31.997  10.860  1.00 25.00           C
ATOM    293  CA  LYS   293     140.244  33.978   8.271  1.00 25.00           C
ATOM    294  CA  SER   294     143.505  32.521   9.656  1.00 25.00           C
ATOM    295  CA  LEU   295     142.041  28.988   9.454  1.00 25.00           C
ATOM    296  CA  ARG   296     140.970  29.612   5.830  1.00 25.00           C
ATOM    297  CA  THR   297     144.487  30.870   4.982  1.00 25.00           C
ATOM    298  CA  GLU   298     146.018  27.750   6.590  1.00 25.00           C
ATOM    299  CA  TYR   299     143.651  25.517   4.572  1.00 25.00           C
ATOM    300  CA  GLY   300     142.980  24.002   7.969  1.00 25.00           C
ATOM    301  CA  ASP   301     143.941  22.443  11.223  1.00 25.00           C
ATOM    302  CA  LEU   302     146.775  20.742  13.045  1.00 25.00           C
ATOM    303  CA  GLU   303     144.350  20.490  15.964  1.00 25.00           C
ATOM    304  CA  LEU   304     143.930  23.498  18.292  1.00 25.00           C
ATOM    305  CA  CYS   305     140.488  24.296  16.776  1.00 25.00           C
ATOM    306  CA  ILE   306     139.558  27.208  19.038  1.00 25.00           C
ATOM    307  CA  GLU   307     136.570  29.268  20.181  1.00 25.00           C
ATOM    308  CA  VAL   308     135.346  31.584  22.933  1.00 25.00           C
ATOM    309  CA  VAL   309     133.728  32.094  26.360  1.00 25.00           C
ATOM    310  CA  ASP   310     133.075  34.448  29.236  1.00 25.00           C
ATOM    311  CA  ASN   311     131.490  31.732  31.358  1.00 25.00           C
ATOM    312  CA  VAL   312     130.199  29.517  28.541  1.00 25.00           C
ATOM    313  CA  GLN   313     127.579  29.803  25.762  1.00 25.00           C
ATOM    314  CA  ASP   314     130.354  30.227  23.156  1.00 25.00           C
ATOM    315  CA  ALA   315     132.152  27.138  24.534  1.00 25.00           C
ATOM    316  CA  ILE   316     128.896  25.131  24.352  1.00 25.00           C
ATOM    317  CA  ASP   317     128.371  26.261  20.731  1.00 25.00           C
ATOM    318  CA  HIS   318     131.952  25.221  19.862  1.00 25.00           C
ATOM    319  CA  ILE   319     131.376  21.796  21.478  1.00 25.00           C
ATOM    320  CA  HIS   320     128.138  21.370  19.478  1.00 25.00           C
ATOM    321  CA  LYS   321     129.982  22.287  16.249  1.00 25.00           C
ATOM    322  CA  TYR   322     133.023  20.047  15.557  1.00 25.00           C
ATOM    323  CA  GLY   323     132.056  16.759  13.994  1.00 25.00           C
ATOM    324  CA  SER   324     128.774  15.577  15.500  1.00 25.00           C
ATOM    325  CA  SER   325     130.151  14.901  19.021  1.00 25.00           C
ATOM    326  CA  HIS   326     132.883  14.575  21.648  1.00 25.00           C
ATOM    327  CA  THR   327     135.385  14.473  24.543  1.00 25.00           C
ATOM    328  CA  ASP   328     134.596  17.446  26.783  1.00 25.00           C
ATOM    329  CA  VAL   329     136.801  19.804  28.819  1.00 25.00           C
ATOM    330  CA  ILE   330     135.782  22.631  31.082  1.00 25.00           C
ATOM    331  CA  VAL   331     139.091  23.676  32.587  1.00 25.00           C
ATOM    332  CA  THR   332     138.112  24.688  36.154  1.00 25.00           C
ATOM    333  CA  GLU   333     138.603  26.899  39.129  1.00 25.00           C
ATOM    334  CA  ASP   334     134.901  27.338  39.848  1.00 25.00           C
ATOM    335  CA  GLU   335     133.346  24.056  40.938  1.00 25.00           C
ATOM    336  CA  ASN   336     129.802  25.388  40.364  1.00 25.00           C
ATOM    337  CA  THR   337     130.845  26.761  36.944  1.00 25.00           C
ATOM    338  CA  ALA   338     132.377  23.373  36.025  1.00 25.00           C
ATOM    339  CA  GLU   339     129.152  21.599  37.083  1.00 25.00           C
ATOM    340  CA  PHE   340     127.090  24.024  34.955  1.00 25.00           C
ATOM    341  CA  PHE   341     129.382  23.377  31.955  1.00 25.00           C
ATOM    342  CA  LEU   342     128.998  19.599  32.445  1.00 25.00           C
ATOM    343  CA  GLN   343     125.191  19.979  32.594  1.00 25.00           C
ATOM    344  CA  HIS   344     125.247  22.048  29.371  1.00 25.00           C
ATOM    345  CA  VAL   345     127.345  20.229  26.755  1.00 25.00           C
ATOM    346  CA  ASP   346     126.334  16.604  26.295  1.00 25.00           C
ATOM    347  CA  SER   347     128.092  14.618  23.575  1.00 25.00           C
ATOM    348  CA  ALA   348     130.102  11.633  24.726  1.00 25.00           C
ATOM    349  CA  CYS   349     131.838  11.897  28.071  1.00 25.00           C
ATOM    350  CA  VAL   350     132.206  14.770  30.488  1.00 25.00           C
ATOM    351  CA  PHE   351     135.231  15.522  32.697  1.00 25.00           C
ATOM    352  CA  TRP   352     135.916  18.760  34.596  1.00 25.00           C
ATOM    353  CA  ASN   353     139.647  18.912  35.398  1.00 25.00           C
ATOM    354  CA  ALA   354     142.657  17.303  33.669  1.00 25.00           C
ATOM    355  CA  SER   355     142.423  16.917  29.879  1.00 25.00           C
ATOM    356  CA  THR   356     140.416  14.068  28.295  1.00 25.00           C
ATOM    357  CA  ARG   357     143.355  11.617  28.434  1.00 25.00           C
ATOM    358  CA  PHE   358     141.048   8.891  29.820  1.00 25.00           C
ATOM    359  CA  SER   359     138.364   7.786  27.302  1.00 25.00           C
TER
END
