
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  146 (  146),  selected  140 , name T0312TS393_2
# Molecule2: number of CA atoms  140 ( 1114),  selected  140 , name T0312.pdb
# PARAMETERS: T0312TS393_2.T0312.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        40 - 76          4.87    18.37
  LONGEST_CONTINUOUS_SEGMENT:    37        41 - 77          4.81    18.53
  LCS_AVERAGE:     20.32

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        21 - 38          1.67    24.24
  LCS_AVERAGE:      7.42

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        21 - 34          0.99    25.70
  LCS_AVERAGE:      3.78

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      3    7   10     0    3    5    5    8   10   10   12   14   16   19   23   24   29   33   36   39   40   43   49 
LCS_GDT     K       2     K       2      3    7   10     0    3    5    5    6    8    8   10   13   16   18   23   24   26   34   35   37   39   43   49 
LCS_GDT     V       3     V       3      4    7   10     0    3    5    5    6    8    8    8   13   15   16   24   26   26   29   32   35   40   42   49 
LCS_GDT     F       4     F       4      4    7   10     1    3    5    5    6    8    8   10   13   15   22   24   26   26   29   31   32   38   41   51 
LCS_GDT     E       5     E       5      4    7   10     3    3    5    5    6   11   17   19   19   21   22   24   26   26   29   31   32   36   39   43 
LCS_GDT     F       6     F       6      4    7   21     3    3    5    5    7   11   11   13   17   21   22   24   26   26   26   31   32   35   41   48 
LCS_GDT     E       7     E       7      4    7   25     3    4    5    5    6   11   11   13   17   21   22   24   26   26   29   33   41   46   52   55 
LCS_GDT     V       8     V       8      4    6   35     3    4    7   16   17   18   19   19   20   22   25   29   33   38   41   43   46   50   52   55 
LCS_GDT     G       9     G       9      4    7   35     3    4    4    7   16   17   17   20   22   25   29   30   31   33   39   42   44   47   51   55 
LCS_GDT     K      10     K      10      4    8   35     3    4    4    7    9   16   18   21   22   25   29   30   31   33   39   42   44   47   52   55 
LCS_GDT     G      11     G      11      4    8   35     3    4    5    8   13   17   18   21   22   25   29   30   32   35   39   42   44   48   52   55 
LCS_GDT     F      12     F      12      4    8   35     3    4    5    7   10   11   18   21   22   25   29   30   32   33   35   36   39   43   49   52 
LCS_GDT     L      13     L      13      4    8   35     3    4    6    8   13   17   18   21   22   25   29   30   32   33   35   36   39   41   42   46 
LCS_GDT     L      14     L      14      4    8   35     3    3    6    7   12   16   18   21   22   25   29   30   32   33   35   38   40   45   48   53 
LCS_GDT     R      15     R      15      5    8   35     3    4    6    7   10   11   16   18   22   25   29   30   32   33   35   41   44   46   49   53 
LCS_GDT     L      16     L      16      5    8   35     3    4    6    7   10   13   18   21   22   25   29   30   34   37   41   43   45   49   52   55 
LCS_GDT     D      17     D      17      5    8   35     3    3    6    7   10   11   14   17   22   25   29   30   35   37   41   43   47   49   52   55 
LCS_GDT     Y      18     Y      18      5    8   35     3    4    6    7   10   11   14   17   22   25   29   30   35   37   41   43   47   49   50   52 
LCS_GDT     G      19     G      19      5    8   35     3    4    6    8   12   16   18   21   22   25   29   30   32   35   37   43   47   49   50   51 
LCS_GDT     K      20     K      20      3   17   35     3    3    4    9   12   16   18   21   22   25   29   30   35   37   41   43   47   49   50   52 
LCS_GDT     D      21     D      21     14   18   35    11   13   15   16   17   18   19   19   22   24   27   27   31   32   35   39   45   49   50   52 
LCS_GDT     L      22     L      22     14   18   35    11   13   15   16   17   18   19   19   20   22   25   27   29   32   38   43   45   49   52   55 
LCS_GDT     V      23     V      23     14   18   35    11   13   15   16   17   18   19   19   22   24   27   29   32   33   36   38   40   44   49   50 
LCS_GDT     R      24     R      24     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   33   36   38   40   43   48   48 
LCS_GDT     Q      25     Q      25     14   18   35    11   13   15   16   17   18   19   21   22   25   29   29   32   35   39   41   45   49   52   55 
LCS_GDT     I      26     I      26     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   35   37   39   43   48   50   53 
LCS_GDT     E      27     E      27     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   34   36   38   39   42   46   50 
LCS_GDT     E      28     E      28     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   34   36   38   41   44   46   50 
LCS_GDT     F      29     F      29     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   35   37   39   41   46   48   53 
LCS_GDT     L      30     L      30     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   34   36   40   46   49   53   56 
LCS_GDT     E      31     E      31     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   33   35   37   41   46   48   53 
LCS_GDT     E      32     E      32     14   18   35    11   13   15   16   17   18   19   21   22   25   29   30   32   34   35   39   41   46   49   53 
LCS_GDT     K      33     K      33     14   18   35     3    4    7   12   15   18   19   19   20   22   26   29   32   34   37   43   47   49   53   56 
LCS_GDT     G      34     G      34     14   18   35    10   13   15   16   17   18   19   21   22   25   29   30   32   34   38   44   48   50   53   56 
LCS_GDT     I      35     I      35      5   18   35     4   12   15   16   17   18   19   21   22   25   29   31   34   40   44   47   50   51   53   56 
LCS_GDT     H      36     H      36      5   18   35     3    6   15   16   17   18   19   19   20   22   25   26   30   34   38   44   47   50   53   56 
LCS_GDT     A      37     A      37      5   18   35     3    4    7   14   17   18   19   19   20   22   26   31   36   41   44   47   50   51   53   56 
LCS_GDT     A      38     A      38      3   18   35     0    3    7   13   16   17   19   19   20   22   26   31   36   41   44   47   50   51   53   56 
LCS_GDT     H      39     H      39      3    7   35     2    3    3    5    7   11   13   15   18   21   26   31   36   41   44   47   50   51   53   56 
LCS_GDT     I      40     I      40      3    7   37     1    3    5    8   14   17   18   21   22   25   29   31   36   41   44   47   50   51   53   56 
LCS_GDT     S      41     S      41      3    5   37     0    3    4    7   12   16   18   21   22   25   29   33   36   41   44   47   50   51   53   56 
LCS_GDT     A      42     A      42      3    4   37     1    3    5    7   12   20   24   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     I      43     I      43      3    4   37     2    3    3    6   12   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     G      44     G      44      3    8   37     1    6    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     A      45     A      45      5   11   37     2    4    8   15   18   20   23   26   30   33   35   37   40   42   44   47   50   51   53   56 
LCS_GDT     V      46     V      46      5   11   37     3    4    8   15   18   20   23   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     R      47     R      47      5   11   37     3    4    7    8   16   20   23   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     S      48     S      48      5   11   37     3    9   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     A      49     A      49      5   11   37     3    9   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     V      50     V      50      5   11   37     3    9   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     I      51     I      51      5   11   37     3    4    8   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     G      52     G      52      5   11   37     2    4    6    9   13   19   23   26   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     Y      53     Y      53      4   11   37     3    6   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     Y      54     Y      54      4   11   37     2    6   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     D      55     D      55      4   11   37     3    6   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     Q      56     Q      56      3   11   37     3    9    9    9   14   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     E      57     E      57      3   12   37     3    6   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     K      58     K      58      4   12   37     4    6   10   15   17   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     K      59     K      59      4   12   37     4    5    7   11   18   20   25   27   30   33   35   38   40   42   43   47   50   51   53   56 
LCS_GDT     E      60     E      60      5   12   37     4    9    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     Y      61     Y      61      5   12   37     4    5    7   10   13   18   23   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     V      62     V      62      5   12   37     3    9    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     K      63     K      63      5   12   37     3    9    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     K      64     K      64      5   12   37     3    9   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     E      65     E      65      5   12   37     2    4    7   13   18   20   23   27   30   33   35   38   40   42   43   45   50   51   52   55 
LCS_GDT     L      66     L      66      5   12   37     3    9   10   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     M      67     M      67      5   12   37     3    5    9   15   18   20   25   27   30   33   35   38   40   42   43   46   50   51   52   55 
LCS_GDT     E      68     E      68      5   12   37     3    6    9   14   17   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     P      69     P      69      3   10   37     3    3    6   11   17   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     L      70     L      70      4   10   37     3    4    5    8   13   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     E      71     E      71      4   10   37     3    4    6    9   17   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     I      72     I      72      4   10   37     3    4    6    8   17   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     L      73     L      73      4    7   37     3    5    6    8   10   17   24   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     S      74     S      74      3    7   37     1    3    6   10   12   15   17   21   27   31   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     L      75     L      75      4    7   37     3    3    5    6    8   11   13   17   24   31   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     S      76     S      76      4    7   37     3    3    5    6    8   11   12   17   20   23   27   30   35   37   41   43   47   51   53   56 
LCS_GDT     G      77     G      77      4    7   37     3    3    4    6    8   11   13   17   20   23   27   29   35   37   41   43   47   49   53   56 
LCS_GDT     N      78     N      78      4    6   26     3    3    5    6    8   11   13   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     V      79     V      79      3    7   26     3    3    4    6    8   11   12   17   20   23   27   29   35   37   41   43   47   49   50   53 
LCS_GDT     S      80     S      80      3    7   26     3    3    5    6    8   11   13   17   20   23   27   29   35   37   41   43   47   49   50   55 
LCS_GDT     M      81     M      81      4    7   26     3    4    5    5    7   10   13   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     K      82     K      82      4    7   26     3    4    5    5    8    9   11   13   18   22   24   30   34   37   41   43   47   49   52   55 
LCS_GDT     D      83     D      83      4    7   26     3    4    5    5    8    9   11   13   16   22   24   30   34   37   41   43   45   49   52   55 
LCS_GDT     S      84     S      84      4   11   26     3    4    5    8   10   11   14   17   20   23   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     K      85     K      85      4   11   26     3    4    7    8   10   11   14   17   20   23   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     P      86     P      86      4   11   26     3    5    7    8   10   11   14   15   19   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     F      87     F      87      4   11   26     3    5    7    8   10   11   14   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     C      88     C      88      4   11   26     3    4    4    8   10   11   14   17   20   23   27   30   35   37   41   43   47   49   52   56 
LCS_GDT     H      89     H      89      4   11   26     3    5    7    8   10   11   14   15   20   22   27   31   36   41   44   47   50   51   53   56 
LCS_GDT     I      90     I      90      4   11   26     3    5    7    8   10   14   21   24   27   32   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     H      91     H      91      4   11   26     3    5    7    8   10   13   14   18   23   32   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     V      92     V      92      4   11   26     3    4    6    8   10   11   14   16   20   23   30   37   38   41   43   44   47   49   52   55 
LCS_GDT     L      93     L      93      4   11   26     3    5    7    8   10   11   14   16   19   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     L      94     L      94      4   11   26     3    3    5    8    9   11   14   15   19   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     G      95     G      95      4    7   26     3    3    5    6    8   12   14   17   19   23   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     K      96     K      96      4    7   26     3    3    5    6    8   12   14   17   19   24   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     D      97     D      97      4   10   26     3    3    5    7    9   12   14   16   21   24   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     G      98     G      98      4   10   24     3    3    5    8   10   12   14   16   18   22   25   30   35   37   41   43   47   49   52   55 
LCS_GDT     E      99     E      99      3   10   23     3    3    4    5   10   12   14   16   18   24   25   30   34   37   41   43   47   49   52   55 
LCS_GDT     V     100     V     100      3   10   23     3    3    4    8   10   13   18   21   23   25   26   30   35   37   41   43   47   49   52   55 
LCS_GDT     Y     101     Y     101      3   10   23     3    3    6    8   11   14   18   21   25   26   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     G     102     G     102      4   10   23     3    4    6   11   13   15   20   24   26   29   31   34   35   38   43   44   47   49   52   55 
LCS_GDT     G     103     G     103      4   10   23     3    4    8   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     H     104     H     104      4   10   23     3    4    8    8   14   18   22   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     L     105     L     105      4   10   23     3    4    6    8   10   12   14   16   19   23   27   30   35   37   41   47   50   51   53   56 
LCS_GDT     F     106     F     106      4   10   23     3    3    5    7    9   12   14   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     S     107     S     107      4    6   21     3    3    5    5    8   10   13   14   18   22   25   30   34   37   41   43   47   49   52   55 
LCS_GDT     A     108     A     108      3    6   20     3    3    4    5    8   10   11   13   15   16   18   20   24   27   30   34   40   49   52   55 
LCS_GDT     E     109     E     109      4    6   20     3    4    5    5    7   10   14   14   16   17   19   21   24   27   32   37   45   49   52   55 
LCS_GDT     V     110     V     110      4    8   20     3    4    4    7    8   10   14   14   16   17   22   26   32   35   40   43   45   49   52   55 
LCS_GDT     F     111     F     111      5   10   20     3    4    6    7    9   10   14   14   15   16   18   20   23   25   30   31   32   35   40   48 
LCS_GDT     A     112     A     112      5   10   20     3    5    6    7    9   10   14   14   15   16   17   20   23   25   30   31   34   36   43   45 
LCS_GDT     C     113     C     113      5   10   20     3    5    6    7    9   10   12   13   15   16   16   19   21   25   30   31   34   36   43   45 
LCS_GDT     E     114     E     114      5   10   20     3    5    6    7    9   10   12   13   15   16   17   20   23   27   32   36   38   41   42   46 
LCS_GDT     V     115     V     115      5   10   20     3    5    6    7    9   10   12   13   15   16   18   22   23   26   30   33   36   39   41   47 
LCS_GDT     F     116     F     116      6   10   20     4    5    6    7    9   10   12   13   15   16   17   19   26   27   30   33   36   40   44   50 
LCS_GDT     V     117     V     117      6   10   20     4    5    6    7    8   10   12   13   15   16   16   27   29   34   40   42   45   47   49   51 
LCS_GDT     L     118     L     118      6   10   20     4    5    6    6    8   10   12   13   15   16   16   17   20   25   27   32   35   40   43   49 
LCS_GDT     P     119     P     119      6   10   20     4    5    6    7    9   10   12   13   15   16   18   23   23   25   27   32   35   40   42   49 
LCS_GDT     L     120     L     120      6   10   20     4    5    6    6    9   10   12   13   16   16   19   23   24   26   29   32   35   40   43   49 
LCS_GDT     S     121     S     121      6   10   20     4    5    6    8   10   10   12   13   16   16   19   23   24   26   29   32   35   40   42   49 
LCS_GDT     G     122     G     122      5   10   20     3    4    6    8   10   11   12   13   16   16   19   23   24   26   29   32   35   40   43   49 
LCS_GDT     E     123     E     123      5   10   20     3    5    6    8   10   11   12   13   16   16   19   23   24   26   29   32   35   40   43   49 
LCS_GDT     A     124     A     124      5   10   20     3    5    6    8   10   11   12   13   16   16   19   23   24   26   29   32   35   40   43   49 
LCS_GDT     P     125     P     125      5   10   19     3    5    6    8   10   11   12   13   16   16   19   23   24   26   29   32   35   40   43   49 
LCS_GDT     E     126     E     126      5   10   19     3    5    5    7   10   11   12   13   16   16   19   23   24   26   29   32   35   40   46   51 
LCS_GDT     R     127     R     127      5   10   19     3    5    6    8   10   11   12   13   16   16   19   23   24   36   39   42   46   50   52   55 
LCS_GDT     A     128     A     128      6   10   19     3    4    7    8   10   10   12   13   16   16   19   23   24   26   29   32   35   41   46   53 
LCS_GDT     F     129     F     129      6   10   19     3    4    7    8   10   11   12   13   16   17   19   24   33   41   44   47   50   51   53   56 
LCS_GDT     D     130     D     130      6    9   19     3    4    7    7    8   11   12   19   23   27   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     E     131     E     131      6    9   19     3    4    7    7    8   11   12   15   20   25   31   34   38   41   44   47   50   51   53   56 
LCS_GDT     Q     132     Q     132      6    9   19     3    4    7    7    9   15   20   24   28   32   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     T     133     T     133      6    9   19     3    4    7    7    9   13   20   26   29   32   35   38   40   42   44   47   50   51   53   55 
LCS_GDT     G     134     G     134      5    9   19     3    4    7    8   10   13   16   21   27   30   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     L     135     L     135      5    8   19     3    4    5    6    7    8   11   13   14   17   19   33   36   39   43   44   47   49   52   55 
LCS_GDT     F     136     F     136      5    8   18     3    4    5    6    7    8    8    8    8   17   19   19   20   22   22   39   40   46   47   50 
LCS_GDT     L     137     L     137      5    8   11     3    4    5    6    7    8    8    8    8    9   11   16   16   18   31   36   42   45   48   50 
LCS_GDT     W     138     W     138      5    8   11     3    4    5    6    7    8    8    8    8    9    9   16   16   18   19   20   21   40   44   50 
LCS_GDT     L     139     L     139      3    8   11     3    3    4    6    7    8    8    8    8    9   10   16   16   36   37   39   42   45   48   50 
LCS_GDT     E     140     E     140      0    8   11     0    2    4    6    7    8    8    8    8    9   10   16   29   34   37   37   41   43   45   49 
LCS_AVERAGE  LCS_A:  10.50  (   3.78    7.42   20.32 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     16     18     20     25     27     30     33     35     38     40     42     44     47     50     51     53     56 
GDT PERCENT_CA   7.86   9.29  10.71  11.43  12.86  14.29  17.86  19.29  21.43  23.57  25.00  27.14  28.57  30.00  31.43  33.57  35.71  36.43  37.86  40.00
GDT RMS_LOCAL    0.18   0.33   0.91   1.12   1.71   1.89   2.46   2.60   2.91   3.14   3.42   3.88   4.05   4.25   5.19   5.37   5.60   5.68   6.12   6.64
GDT RMS_ALL_CA  26.52  26.23  24.55  23.90  22.09  21.70  20.07  20.21  20.46  19.99  19.40  18.55  18.57  18.55  18.03  18.00  17.95  17.98  18.04  18.04

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.643
LGA    K       2      K       2         11.249
LGA    V       3      V       3         12.609
LGA    F       4      F       4         13.623
LGA    E       5      E       5         17.537
LGA    F       6      F       6         21.214
LGA    E       7      E       7         23.349
LGA    V       8      V       8         19.451
LGA    G       9      G       9         18.375
LGA    K      10      K      10         16.980
LGA    G      11      G      11         17.234
LGA    F      12      F      12         19.154
LGA    L      13      L      13         21.550
LGA    L      14      L      14         22.288
LGA    R      15      R      15         21.012
LGA    L      16      L      16         23.944
LGA    D      17      D      17         27.168
LGA    Y      18      Y      18         27.411
LGA    G      19      G      19         30.931
LGA    K      20      K      20         34.074
LGA    D      21      D      21         34.885
LGA    L      22      L      22         29.636
LGA    V      23      V      23         29.956
LGA    R      24      R      24         36.604
LGA    Q      25      Q      25         35.944
LGA    I      26      I      26         30.987
LGA    E      27      E      27         35.294
LGA    E      28      E      28         40.186
LGA    F      29      F      29         36.160
LGA    L      30      L      30         34.159
LGA    E      31      E      31         40.996
LGA    E      32      E      32         42.259
LGA    K      33      K      33         39.723
LGA    G      34      G      34         37.608
LGA    I      35      I      35         31.221
LGA    H      36      H      36         29.575
LGA    A      37      A      37         25.154
LGA    A      38      A      38         22.639
LGA    H      39      H      39         22.518
LGA    I      40      I      40         18.072
LGA    S      41      S      41         13.315
LGA    A      42      A      42          6.757
LGA    I      43      I      43          3.597
LGA    G      44      G      44          0.899
LGA    A      45      A      45          5.159
LGA    V      46      V      46          4.694
LGA    R      47      R      47          5.934
LGA    S      48      S      48          3.125
LGA    A      49      A      49          2.604
LGA    V      50      V      50          2.487
LGA    I      51      I      51          2.875
LGA    G      52      G      52          5.026
LGA    Y      53      Y      53          1.543
LGA    Y      54      Y      54          0.700
LGA    D      55      D      55          1.599
LGA    Q      56      Q      56          3.720
LGA    E      57      E      57          1.221
LGA    K      58      K      58          2.862
LGA    K      59      K      59          3.056
LGA    E      60      E      60          2.599
LGA    Y      61      Y      61          3.874
LGA    V      62      V      62          1.454
LGA    K      63      K      63          1.374
LGA    K      64      K      64          1.218
LGA    E      65      E      65          3.469
LGA    L      66      L      66          1.769
LGA    M      67      M      67          1.576
LGA    E      68      E      68          2.899
LGA    P      69      P      69          2.561
LGA    L      70      L      70          3.742
LGA    E      71      E      71          3.048
LGA    I      72      I      72          3.072
LGA    L      73      L      73          4.977
LGA    S      74      S      74          8.889
LGA    L      75      L      75          7.928
LGA    S      76      S      76         13.106
LGA    G      77      G      77         14.549
LGA    N      78      N      78         21.307
LGA    V      79      V      79         22.910
LGA    S      80      S      80         27.040
LGA    M      81      M      81         31.179
LGA    K      82      K      82         32.274
LGA    D      83      D      83         35.908
LGA    S      84      S      84         38.969
LGA    K      85      K      85         36.014
LGA    P      86      P      86         31.102
LGA    F      87      F      87         24.810
LGA    C      88      C      88         21.558
LGA    H      89      H      89         15.752
LGA    I      90      I      90          9.490
LGA    H      91      H      91          7.640
LGA    V      92      V      92          6.901
LGA    L      93      L      93          9.931
LGA    L      94      L      94         13.099
LGA    G      95      G      95         14.385
LGA    K      96      K      96         17.749
LGA    D      97      D      97         22.157
LGA    G      98      G      98         24.756
LGA    E      99      E      99         19.570
LGA    V     100      V     100         14.013
LGA    Y     101      Y     101         10.958
LGA    G     102      G     102          6.896
LGA    G     103      G     103          2.533
LGA    H     104      H     104          5.438
LGA    L     105      L     105         11.599
LGA    F     106      F     106         18.126
LGA    S     107      S     107         21.447
LGA    A     108      A     108         25.434
LGA    E     109      E     109         29.752
LGA    V     110      V     110         26.982
LGA    F     111      F     111         28.376
LGA    A     112      A     112         25.331
LGA    C     113      C     113         21.420
LGA    E     114      E     114         17.678
LGA    V     115      V     115         14.493
LGA    F     116      F     116         11.792
LGA    V     117      V     117          8.661
LGA    L     118      L     118         13.942
LGA    P     119      P     119         14.510
LGA    L     120      L     120         20.498
LGA    S     121      S     121         24.334
LGA    G     122      G     122         25.615
LGA    E     123      E     123         24.520
LGA    A     124      A     124         19.494
LGA    P     125      P     125         14.965
LGA    E     126      E     126         13.106
LGA    R     127      R     127         11.371
LGA    A     128      A     128         15.925
LGA    F     129      F     129         15.554
LGA    D     130      D     130         14.549
LGA    E     131      E     131         17.410
LGA    Q     132      Q     132         12.242
LGA    T     133      T     133          9.152
LGA    G     134      G     134         11.781
LGA    L     135      L     135         12.330
LGA    F     136      F     136         16.122
LGA    L     137      L     137         12.416
LGA    W     138      W     138         13.495
LGA    L     139      L     139         10.238
LGA    E     140      E     140         11.223

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  146  140    4.0     27    2.60    18.393    15.852     1.001

LGA_LOCAL      RMSD =  2.597  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.212  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 16.759  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.928405 * X  +  -0.014275 * Y  +   0.371295 * Z  +  48.332062
  Y_new =   0.296732 * X  +  -0.629911 * Y  +   0.717748 * Z  +   2.395650
  Z_new =   0.223637 * X  +   0.776536 * Y  +   0.589048 * Z  +  20.888239 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.921840   -2.219752  [ DEG:    52.8176   -127.1824 ]
  Theta =  -0.225544   -2.916048  [ DEG:   -12.9227   -167.0773 ]
  Phi   =   2.832239   -0.309354  [ DEG:   162.2753    -17.7247 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS393_2                                  
REMARK     2: T0312.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS393_2.T0312.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  146  140   4.0   27   2.60  15.852    16.76
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS393_2
PFRMAT TS
TARGET T0312
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      62.824   1.270  27.140  1.00 25.00           C
ATOM      2  CA  LYS     2      60.109   3.896  27.017  1.00 25.00           C
ATOM      3  CA  VAL     3      57.787   1.083  25.889  1.00 25.00           C
ATOM      4  CA  PHE     4      55.024   3.429  27.034  1.00 25.00           C
ATOM      5  CA  GLU     5      51.602   4.515  28.140  1.00 25.00           C
ATOM      6  CA  PHE     6      47.868   4.725  28.590  1.00 25.00           C
ATOM      7  CA  GLU     7      46.133   5.373  31.914  1.00 25.00           C
ATOM      8  CA  VAL     8      47.538   8.907  32.019  1.00 25.00           C
ATOM      9  CA  GLY     9      51.046  10.232  31.793  1.00 25.00           C
ATOM     10  CA  LYS    10      51.351  11.602  28.212  1.00 25.00           C
ATOM     11  CA  GLY    11      48.427  10.231  26.153  1.00 25.00           C
ATOM     12  CA  PHE    12      47.572   7.264  23.857  1.00 25.00           C
ATOM     13  CA  LEU    13      44.602   4.948  24.129  1.00 25.00           C
ATOM     14  CA  LEU    14      42.080   6.109  21.448  1.00 25.00           C
ATOM     15  CA  ARG    15      41.442   6.747  17.721  1.00 25.00           C
ATOM     16  CA  LEU    16      38.281   4.778  18.142  1.00 25.00           C
ATOM     17  CA  ASP    17      34.968   5.427  16.297  1.00 25.00           C
ATOM     18  CA  TYR    18      31.385   5.815  15.086  1.00 25.00           C
ATOM     19  CA  GLY    19      27.997   4.111  15.392  1.00 25.00           C
ATOM     20  CA  LYS    20      26.248   7.073  16.874  1.00 25.00           C
ATOM     21  CA  ASP    21      25.640   6.124  20.535  1.00 25.00           C
ATOM     22  CA  LEU    22      29.395   5.565  21.039  1.00 25.00           C
ATOM     23  CA  VAL    23      30.139   8.981  19.475  1.00 25.00           C
ATOM     24  CA  ARG    24      27.565  10.626  21.785  1.00 25.00           C
ATOM     25  CA  GLN    25      29.154   8.911  24.818  1.00 25.00           C
ATOM     26  CA  ILE    26      32.616  10.135  23.726  1.00 25.00           C
ATOM     27  CA  GLU    27      31.263  13.697  23.343  1.00 25.00           C
ATOM     28  CA  GLU    28      29.712  13.509  26.840  1.00 25.00           C
ATOM     29  CA  PHE    29      33.043  12.285  28.279  1.00 25.00           C
ATOM     30  CA  LEU    30      34.877  15.171  26.554  1.00 25.00           C
ATOM     31  CA  GLU    31      32.348  17.666  27.985  1.00 25.00           C
ATOM     32  CA  GLU    32      32.832  16.186  31.485  1.00 25.00           C
ATOM     33  CA  LYS    33      34.298  19.501  32.579  1.00 25.00           C
ATOM     34  CA  GLY    34      37.078  19.108  29.974  1.00 25.00           C
ATOM     35  CA  ILE    35      39.493  16.456  28.654  1.00 25.00           C
ATOM     36  CA  HIS    36      41.314  16.166  25.262  1.00 25.00           C
ATOM     37  CA  ALA    37      42.065  12.429  25.223  1.00 25.00           C
ATOM     38  CA  ALA    38      41.230  11.450  21.641  1.00 25.00           C
ATOM     39  CA  HIS    39      38.106  12.526  19.799  1.00 25.00           C
ATOM     40  CA  ILE    40      40.629  14.042  17.366  1.00 25.00           C
ATOM     41  CA  SER    41      43.132  15.860  15.178  1.00 25.00           C
ATOM     42  CA  ALA    42      45.874  14.161  17.226  1.00 25.00           C
ATOM     43  CA  ILE    43      47.740  11.461  15.212  1.00 25.00           C
ATOM     44  CA  GLY    44      48.752  14.777  13.564  1.00 25.00           C
ATOM     45  CA  ALA    45      51.926  14.086  11.565  1.00 25.00           C
ATOM     46  CA  VAL    46      51.287  10.301  11.737  1.00 25.00           C
ATOM     47  CA  ARG    47      52.364   9.588   8.160  1.00 25.00           C
ATOM     48  CA  SER    48      49.846   6.764   7.705  1.00 25.00           C
ATOM     49  CA  ALA    49      50.119   3.916  10.166  1.00 25.00           C
ATOM     50  CA  VAL    50      50.988   0.387  11.143  1.00 25.00           C
ATOM     51  CA  ILE    51      52.659  -1.227  14.138  1.00 25.00           C
ATOM     52  CA  GLY    52      53.828  -2.885  17.316  1.00 25.00           C
ATOM     53  CA  TYR    53      50.681  -5.091  17.239  1.00 25.00           C
ATOM     54  CA  TYR    54      51.791  -8.230  19.147  1.00 25.00           C
ATOM     55  CA  ASP    55      51.809 -11.825  20.392  1.00 25.00           C
ATOM     56  CA  GLN    56      49.999 -15.198  20.549  1.00 25.00           C
ATOM     57  CA  GLU    57      53.293 -16.281  22.129  1.00 25.00           C
ATOM     58  CA  LYS    58      56.251 -16.972  19.888  1.00 25.00           C
ATOM     59  CA  LYS    59      57.647 -14.698  17.107  1.00 25.00           C
ATOM     60  CA  GLU    60      54.594 -14.376  14.873  1.00 25.00           C
ATOM     61  CA  TYR    61      51.479 -12.218  14.487  1.00 25.00           C
ATOM     62  CA  VAL    62      50.414  -9.837  11.648  1.00 25.00           C
ATOM     63  CA  LYS    63      49.423  -6.164  11.437  1.00 25.00           C
ATOM     64  CA  LYS    64      47.620  -3.322   9.702  1.00 25.00           C
ATOM     65  CA  GLU    65      44.761  -1.832   7.708  1.00 25.00           C
ATOM     66  CA  LEU    66      46.554   1.505   7.553  1.00 25.00           C
ATOM     67  CA  MET    67      45.225   2.029   4.052  1.00 25.00           C
ATOM     68  CA  GLU    68      46.066   5.744   4.241  1.00 25.00           C
ATOM     69  CA  PRO    69      42.463   6.870   4.391  1.00 25.00           C
ATOM     70  CA  LEU    70      43.946  10.218   5.589  1.00 25.00           C
ATOM     71  CA  GLU    71      43.251  11.750   8.985  1.00 25.00           C
ATOM     72  CA  ILE    72      44.937  12.156  12.414  1.00 25.00           C
ATOM     73  CA  LEU    73      43.954   8.453  12.736  1.00 25.00           C
ATOM     74  CA  SER    74      42.889   4.869  13.235  1.00 25.00           C
ATOM     75  CA  LEU    75      46.538   4.229  14.214  1.00 25.00           C
ATOM     76  CA  SER    76      46.366   0.510  13.625  1.00 25.00           C
ATOM     77  CA  GLY    77      46.590  -2.295  16.160  1.00 25.00           C
ATOM     78  CA  ASN    78      44.600  -4.798  14.070  1.00 25.00           C
ATOM     79  CA  VAL    79      46.213  -7.304  16.485  1.00 25.00           C
ATOM     80  CA  SER    80      44.808 -10.862  16.653  1.00 25.00           C
ATOM     81  CA  MET    81      42.280 -10.798  13.807  1.00 25.00           C
ATOM     82  CA  LYS    82      40.511 -13.278  11.501  1.00 25.00           C
ATOM     83  CA  ASP    83      39.546 -16.631  13.153  1.00 25.00           C
ATOM     84  CA  SER    84      38.408 -14.448  16.074  1.00 25.00           C
ATOM     85  CA  LYS    85      38.873 -11.037  17.736  1.00 25.00           C
ATOM     86  CA  PRO    86      40.521  -7.723  18.615  1.00 25.00           C
ATOM     87  CA  PHE    87      41.953  -4.211  18.336  1.00 25.00           C
ATOM     88  CA  CYS    88      40.951  -0.634  17.666  1.00 25.00           C
ATOM     89  CA  HIS    89      43.572   2.059  17.780  1.00 25.00           C
ATOM     90  CA  ILE    90      46.352   4.163  19.418  1.00 25.00           C
ATOM     91  CA  HIS    91      46.439   7.895  18.947  1.00 25.00           C
ATOM     92  CA  VAL    92      48.039  11.006  20.429  1.00 25.00           C
ATOM     93  CA  LEU    93      51.384  11.740  22.120  1.00 25.00           C
ATOM     94  CA  LEU    94      53.210  14.052  19.823  1.00 25.00           C
ATOM     95  CA  GLY    95      51.406  15.706  16.943  1.00 25.00           C
ATOM     96  CA  LYS    96      52.651  18.736  15.054  1.00 25.00           C
ATOM     97  CA  ASP    97      55.821  16.733  14.250  1.00 25.00           C
ATOM     98  CA  GLY    98      57.478  13.509  15.362  1.00 25.00           C
ATOM     99  CA  GLU    99      54.434  11.254  15.713  1.00 25.00           C
ATOM    100  CA  VAL   100      51.924   9.318  17.715  1.00 25.00           C
ATOM    101  CA  TYR   101      51.104   6.112  19.492  1.00 25.00           C
ATOM    102  CA  GLY   102      51.486   4.178  16.241  1.00 25.00           C
ATOM    103  CA  GLY   103      50.135   1.183  18.151  1.00 25.00           C
ATOM    104  CA  HIS   104      48.339  -1.007  20.706  1.00 25.00           C
ATOM    105  CA  LEU   105      44.806  -0.599  21.884  1.00 25.00           C
ATOM    106  CA  PHE   106      41.232   0.493  22.545  1.00 25.00           C
ATOM    107  CA  SER   107      40.172  -3.175  22.974  1.00 25.00           C
ATOM    108  CA  ALA   108      38.330  -4.876  25.892  1.00 25.00           C
ATOM    109  CA  GLU   109      37.013  -2.090  28.119  1.00 25.00           C
ATOM    110  CA  VAL   110      39.582   0.651  27.548  1.00 25.00           C
ATOM    111  CA  PHE   111      42.441  -1.783  27.933  1.00 25.00           C
ATOM    112  CA  ALA   112      45.693  -0.155  26.849  1.00 25.00           C
ATOM    113  CA  CYS   113      49.420   0.172  26.167  1.00 25.00           C
ATOM    114  CA  GLU   114      50.433   2.694  23.524  1.00 25.00           C
ATOM    115  CA  VAL   115      53.719   2.295  21.672  1.00 25.00           C
ATOM    116  CA  PHE   116      56.456   4.966  22.105  1.00 25.00           C
ATOM    117  CA  VAL   117      56.877   7.624  19.419  1.00 25.00           C
ATOM    118  CA  LEU   118      55.976   6.477  15.894  1.00 25.00           C
ATOM    119  CA  PRO   119      58.266   8.586  13.742  1.00 25.00           C
ATOM    120  CA  LEU   120      58.278   7.214  10.165  1.00 25.00           C
ATOM    121  CA  SER   121      60.898   7.748   7.459  1.00 25.00           C
ATOM    122  CA  GLY   122      61.978   4.153   8.007  1.00 25.00           C
ATOM    123  CA  GLU   123      59.487   2.062   9.856  1.00 25.00           C
ATOM    124  CA  ALA   124      57.624   1.180  13.037  1.00 25.00           C
ATOM    125  CA  PRO   125      58.317   1.842  16.680  1.00 25.00           C
ATOM    126  CA  GLU   126      57.843  -0.806  19.455  1.00 25.00           C
ATOM    127  CA  ARG   127      56.080  -2.396  22.388  1.00 25.00           C
ATOM    128  CA  ALA   128      52.802  -4.213  22.360  1.00 25.00           C
ATOM    129  CA  PHE   129      51.962  -5.546  25.871  1.00 25.00           C
ATOM    130  CA  ASP   130      50.888  -7.139  29.170  1.00 25.00           C
ATOM    131  CA  GLU   131      48.496  -8.641  31.780  1.00 25.00           C
ATOM    132  CA  GLN   132      49.710 -11.910  33.187  1.00 25.00           C
ATOM    133  CA  THR   133      53.258 -10.775  32.691  1.00 25.00           C
ATOM    134  CA  GLY   134      55.547  -7.874  31.631  1.00 25.00           C
ATOM    135  CA  LEU   135      58.226  -8.918  34.135  1.00 25.00           C
ATOM    136  CA  PHE   136      59.778  -9.900  37.466  1.00 25.00           C
ATOM    137  CA  LEU   137      63.557  -9.794  37.215  1.00 25.00           C
ATOM    138  CA  TRP   138      66.957 -11.140  38.283  1.00 25.00           C
ATOM    139  CA  LEU   139      70.200 -11.703  36.464  1.00 25.00           C
ATOM    140  CA  GLU   140      73.653 -11.443  35.031  1.00 25.00           C
ATOM    141  CA  HIS   141      75.438  -8.119  35.457  1.00 25.00           C
ATOM    142  CA  HIS   142      73.851  -6.295  38.450  1.00 25.00           C
ATOM    143  CA  HIS   143      73.444  -4.821  41.915  1.00 25.00           C
ATOM    144  CA  HIS   144      72.520  -5.146  45.600  1.00 25.00           C
ATOM    145  CA  HIS   145      74.323  -2.077  46.934  1.00 25.00           C
ATOM    146  CA  HIS   146      73.039   0.959  45.069  1.00 25.00           C
TER
END
