
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0312TS168_4-D1
# Molecule2: number of CA atoms  132 ( 1043),  selected  132 , name T0312_D1.pdb
# PARAMETERS: T0312TS168_4-D1.T0312_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        39 - 75          4.96    19.90
  LONGEST_CONTINUOUS_SEGMENT:    37        40 - 76          4.90    20.44
  LCS_AVERAGE:     20.95

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        50 - 64          1.99    23.36
  LCS_AVERAGE:      7.90

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    12        21 - 32          0.26    22.49
  LCS_AVERAGE:      3.95

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     G       9     G       9      4    9   27     0    3    4    4   14   14   16   17   22   23   23   24   25   27   33   39   41   47   49   51 
LCS_GDT     K      10     K      10      4   11   27     3    4    7    8   14   14   17   19   22   23   23   24   25   29   34   39   41   47   49   51 
LCS_GDT     G      11     G      11      6   11   27     3    4    7    9   14   14   17   19   22   23   23   24   25   29   34   39   41   47   49   51 
LCS_GDT     F      12     F      12      6   11   27     3    5    7    9   14   14   17   19   22   23   23   24   25   29   34   39   41   47   49   51 
LCS_GDT     L      13     L      13      6   11   27     3    5    7    9   11   13   17   19   22   23   23   24   25   26   27   28   41   47   49   51 
LCS_GDT     L      14     L      14      6   11   27     3    5    7    9   11   13   17   19   22   23   23   24   25   26   33   39   41   47   49   51 
LCS_GDT     R      15     R      15      6   11   27     3    5    7    9   11   13   17   19   22   23   23   24   25   26   27   39   41   47   49   51 
LCS_GDT     L      16     L      16      6   11   27     3    5    7    8    9   13   15   18   22   23   23   24   25   29   34   39   41   47   49   51 
LCS_GDT     D      17     D      17      6   11   27     3    4    7    9   10   13   15   19   22   23   23   24   25   29   34   39   41   47   49   51 
LCS_GDT     Y      18     Y      18      4   11   27     3    4    5    9   11   13   17   19   22   23   23   24   25   29   34   39   41   47   49   51 
LCS_GDT     G      19     G      19      4   11   27     3    4    6    9   11   13   17   19   22   23   23   26   29   32   36   38   41   47   49   51 
LCS_GDT     K      20     K      20      4   13   27     3    3    4    9   10   13   16   19   22   23   23   26   32   34   38   39   41   43   49   51 
LCS_GDT     D      21     D      21     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   32   34   38   39   41   43   48   50 
LCS_GDT     L      22     L      22     12   13   27    11   12   12   12   14   14   16   17   18   19   22   27   32   34   38   39   41   43   48   50 
LCS_GDT     V      23     V      23     12   13   27    11   12   12   12   14   14   16   18   22   23   23   27   32   34   38   39   41   43   48   50 
LCS_GDT     R      24     R      24     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   32   34   38   39   41   43   48   49 
LCS_GDT     Q      25     Q      25     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   32   34   38   39   41   43   48   50 
LCS_GDT     I      26     I      26     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   32   34   38   39   41   43   48   50 
LCS_GDT     E      27     E      27     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   32   34   38   39   41   43   48   49 
LCS_GDT     E      28     E      28     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   32   34   38   39   41   43   48   49 
LCS_GDT     F      29     F      29     12   13   27    11   12   12   12   12   14   17   19   22   23   23   27   32   34   38   39   41   43   48   51 
LCS_GDT     L      30     L      30     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   32   34   38   39   41   43   48   50 
LCS_GDT     E      31     E      31     12   13   27    11   12   12   12   14   14   17   19   22   23   23   27   31   33   38   39   41   43   45   49 
LCS_GDT     E      32     E      32     12   13   27    11   12   12   12   12   14   15   17   21   23   23   27   29   33   36   39   41   43   45   49 
LCS_GDT     K      33     K      33      5   13   27     1    4    5    9   12   14   15   17   18   21   21   24   25   29   32   35   40   42   46   51 
LCS_GDT     G      34     G      34      5    8   27     0    3    5    6    7    9   10   15   19   20   22   24   25   26   29   35   37   41   46   48 
LCS_GDT     I      35     I      35      5    8   27     3    4    5    6    7    9   12   13   18   19   21   21   24   26   31   37   40   43   47   51 
LCS_GDT     H      36     H      36      5    8   24     3    3    5    6    7    9    9   12   14   15   17   19   22   23   29   35   38   41   45   48 
LCS_GDT     A      37     A      37      5    8   30     3    3    5    6    7    9   11   13   16   19   19   20   22   23   30   35   38   43   48   51 
LCS_GDT     A      38     A      38      5    8   35     3    5    6    6    8    9    9   15   17   20   23   25   29   33   38   42   47   49   51   51 
LCS_GDT     H      39     H      39      3    8   37     1    3    5    7   11   13   17   18   21   25   27   30   37   40   42   44   47   49   51   51 
LCS_GDT     I      40     I      40      3    7   37     1    3    5    7   13   18   20   24   25   25   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     S      41     S      41      5   14   37     4    6    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     A      42     A      42      5   14   37     4    6    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     I      43     I      43      5   14   37     4    6    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     G      44     G      44      5   14   37     4    6    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     A      45     A      45      5   14   37     3    5    9   12   17   21   23   24   26   27   31   35   39   40   42   44   47   49   51   51 
LCS_GDT     V      46     V      46      4   14   37     3    3    6    9   12   18   23   24   26   27   28   33   36   39   42   44   47   49   51   51 
LCS_GDT     R      47     R      47      4   14   37     3    3    4    7    9   21   23   24   26   27   29   31   39   40   42   44   47   49   51   51 
LCS_GDT     S      48     S      48      4   14   37     3    6    9   12   17   21   23   24   26   27   29   31   39   40   42   44   47   49   51   51 
LCS_GDT     A      49     A      49      5   14   37     3    4    6   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     V      50     V      50      5   15   37     3    6    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     I      51     I      51      5   15   37     4    6    8   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     G      52     G      52      5   15   37     4    4    8   12   15   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     Y      53     Y      53      5   15   37     4    6    8   12   14   18   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     Y      54     Y      54      5   15   37     4    4    7   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     D      55     D      55      3   15   37     3    5    8   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     Q      56     Q      56      3   15   37     3    5    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     E      57     E      57      3   15   37     3    5    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     K      58     K      58      4   15   37     3    3    8   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     K      59     K      59      4   15   37     3    3    8   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     E      60     E      60      6   15   37     4    5    8   12   14   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     Y      61     Y      61      6   15   37     4    5    6    9   14   19   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     V      62     V      62      6   15   37     4    5    6   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     K      63     K      63      6   15   37     4    4    9   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     K      64     K      64      6   15   37     3    5    8   12   17   21   23   24   26   27   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     E      65     E      65      6    8   37     3    5    7    9   13   16   18   21   26   27   29   31   39   40   42   44   46   48   51   51 
LCS_GDT     L      66     L      66      3    8   37     3    4    6    9   14   16   18   20   24   26   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     M      67     M      67      4    8   37     3    4    5    7    7   12   18   19   21   24   25   35   39   40   42   44   47   49   51   51 
LCS_GDT     E      68     E      68      4    8   37     3    4    5    7    9    9   13   19   21   25   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     P      69     P      69      4    8   37     3    4    6   12   14   16   18   19   24   26   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     L      70     L      70      4    8   37     3    4    5    7    9   13   18   19   24   26   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     E      71     E      71      3    9   37     3    3    4    8   10   13   18   21   24   26   31   35   39   40   42   44   47   49   51   51 
LCS_GDT     I      72     I      72      3    9   37     3    3    4    9   12   14   18   21   24   27   31   35   39   40   42   44   47   49   51   51 
LCS_GDT     L      73     L      73      3    9   37     3    5    5    7   12   16   17   21   24   27   31   33   35   37   39   43   44   46   50   51 
LCS_GDT     S      74     S      74      4    9   37     3    4    7    9   12   16   17   20   24   27   31   33   35   37   39   43   44   47   50   51 
LCS_GDT     L      75     L      75      4    9   37     3    3    5    8   10   12   13   18   22   27   31   33   35   38   42   44   47   49   51   51 
LCS_GDT     S      76     S      76      4    9   37     3    4    5    8   10   12   13   16   22   27   31   33   35   37   39   44   47   49   51   51 
LCS_GDT     G      77     G      77      5    9   30     4    4    5    8   10   12   13   16   19   24   31   33   35   37   39   44   47   49   51   51 
LCS_GDT     N      78     N      78      5    9   28     4    4    5    8   10   12   13   16   19   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     V      79     V      79      5    9   28     4    4    5    7   10   12   13   16   22   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     S      80     S      80      5    8   28     4    4    5    6    8   11   13   18   22   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     M      81     M      81      5    8   28     3    4    5    6    8   11   13   18   22   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     K      82     K      82      5    8   28     3    4    5    6    8   11   13   13   19   21   24   27   32   37   39   43   44   47   49   51 
LCS_GDT     D      83     D      83      5    8   28     3    4    5    6    8   11   14   14   19   21   24   25   31   35   38   43   44   47   49   51 
LCS_GDT     S      84     S      84      4    9   28     3    4    5    7   10   11   14   18   22   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     K      85     K      85      4   10   28     3    4    5    7   10   11   14   15   22   24   26   33   35   37   39   43   44   47   49   51 
LCS_GDT     P      86     P      86      4   10   28     3    4    5    7   10   11   14   16   19   23   27   30   33   37   39   43   44   47   49   51 
LCS_GDT     F      87     F      87      4   10   28     3    4    6    7   10   11   14   16   22   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     C      88     C      88      4   10   28     3    4    4    6    8   14   15   20   24   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     H      89     H      89      4   10   28     3    4    5    7   11   12   16   20   24   27   29   30   32   36   38   43   44   47   49   51 
LCS_GDT     I      90     I      90      3   10   28     3    3    5    8   11   12   16   20   24   27   29   30   32   36   39   43   47   49   51   51 
LCS_GDT     H      91     H      91      3   10   28     3    3    5    7   10   11   16   18   19   26   29   30   39   40   42   44   47   49   51   51 
LCS_GDT     V      92     V      92      3   10   28     3    3    5    8   10   12   16   24   26   27   31   35   39   40   42   44   47   49   51   51 
LCS_GDT     L      93     L      93      3   10   28     1    3    6    9   12   16   18   21   24   27   31   33   35   37   39   43   44   47   50   51 
LCS_GDT     L      94     L      94      3   10   28     2    4    5    7   10   11   16   18   24   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     G      95     G      95      4    9   28     3    4    4    7   12   14   16   18   24   27   31   33   35   37   39   43   44   45   49   51 
LCS_GDT     K      96     K      96      4    9   28     3    4    7    9   12   16   17   20   24   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     D      97     D      97      4    9   27     3    4    7    9   12   16   17   20   24   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     G      98     G      98      4    9   24     3    4    5    8   11   16   17   20   24   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     E      99     E      99      3    9   23     3    4    6    7   11   16   17   20   24   27   29   30   32   37   39   43   44   47   49   51 
LCS_GDT     V     100     V     100      4    9   23     3    4    7    9   12   16   17   20   24   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     Y     101     Y     101      4    9   23     3    4    7    9   12   14   17   20   24   27   31   33   35   37   39   43   44   45   49   51 
LCS_GDT     G     102     G     102      4    9   23     3    4    7    9   12   16   18   20   24   27   31   33   35   37   39   43   44   47   49   51 
LCS_GDT     G     103     G     103      4    9   23     3    4    7    9   12   14   16   20   24   27   31   35   39   40   42   44   46   49   51   51 
LCS_GDT     H     104     H     104      4    9   23     3    4    6    8   12   14   16   18   22   27   31   33   35   37   42   43   46   49   51   51 
LCS_GDT     L     105     L     105      4    6   23     2    5    5    8   11   16   17   20   24   27   31   33   35   37   39   43   47   49   51   51 
LCS_GDT     F     106     F     106      4    6   23     0    4    5    8   11   16   17   20   24   27   31   33   35   37   39   43   44   45   49   51 
LCS_GDT     S     107     S     107      3    6   22     0    3    4    5    8    9   11   15   16   19   23   26   33   37   39   43   44   45   49   49 
LCS_GDT     A     108     A     108      3    7   22     3    3    4    4    7    8   10   15   16   17   21   23   27   31   35   40   43   45   49   49 
LCS_GDT     E     109     E     109      4    7   20     3    3    4    5    8    9   12   15   16   17   21   22   26   30   35   40   43   45   49   49 
LCS_GDT     V     110     V     110      4    7   20     3    3    4    5    7   11   13   15   16   16   20   22   22   24   25   34   40   43   47   48 
LCS_GDT     F     111     F     111      5    7   20     3    5    5    7    8   11   13   15   16   16   20   22   22   24   24   27   33   37   40   47 
LCS_GDT     A     112     A     112      5    7   20     3    5    5    5    7    8   10   13   14   15   16   18   21   24   25   27   33   37   39   41 
LCS_GDT     C     113     C     113      5    7   20     3    5    5    7    9   11   13   15   16   18   20   24   25   26   27   30   35   40   47   49 
LCS_GDT     E     114     E     114      5    8   20     3    5    5    7    8   11   13   15   16   17   21   24   25   26   28   31   34   37   39   41 
LCS_GDT     V     115     V     115      5    8   20     3    5    7    7    8   11   13   15   16   17   20   22   24   27   29   31   34   37   41   43 
LCS_GDT     F     116     F     116      6    8   20     4    5    7    7    8   11   13   15   16   17   20   22   25   28   30   31   35   37   41   43 
LCS_GDT     V     117     V     117      6    8   20     4    5    7    7    8   11   13   15   16   17   20   22   22   24   28   32   39   46   48   51 
LCS_GDT     L     118     L     118      6    8   20     4    5    7    7    7   11   13   15   16   17   20   22   22   24   24   28   31   34   45   51 
LCS_GDT     P     119     P     119      6    8   20     4    5    7    7    8   11   13   15   16   17   20   22   22   24   29   34   38   40   49   51 
LCS_GDT     L     120     L     120      6    8   20     3    4    7    7    8   11   13   16   16   17   20   22   22   24   26   28   31   34   40   43 
LCS_GDT     S     121     S     121      6   12   20     3    4    7    9   10   12   13   16   16   17   20   22   22   24   26   28   31   34   40   43 
LCS_GDT     G     122     G     122      3   12   20     3    5    7    9   10   12   13   16   16   17   18   20   22   24   26   28   31   34   40   43 
LCS_GDT     E     123     E     123      5   12   20     2    5    7    9   10   12   13   16   16   17   18   20   22   24   26   28   31   34   40   43 
LCS_GDT     A     124     A     124      5   12   20     2    4    6    9   10   12   13   16   16   17   18   20   22   24   26   28   31   34   40   43 
LCS_GDT     P     125     P     125      5   12   19     3    4    7    9   10   12   13   16   16   17   18   20   22   24   26   28   31   34   40   43 
LCS_GDT     E     126     E     126      5   12   19     3    4    5    5    8   12   13   16   16   17   18   20   22   24   26   28   38   40   49   51 
LCS_GDT     R     127     R     127      5   12   19     3    5    5    8   10   12   13   16   16   17   18   20   22   28   39   44   47   49   51   51 
LCS_GDT     A     128     A     128      5   12   19     3    5    7    9   10   12   13   16   16   17   18   20   22   24   27   27   31   34   45   49 
LCS_GDT     F     129     F     129      5   12   19     3    5    7    9   10   12   13   16   16   17   18   24   27   30   32   40   47   49   51   51 
LCS_GDT     D     130     D     130      5   12   19     3    5    7    9   10   12   13   16   18   23   27   35   39   40   42   44   47   49   51   51 
LCS_GDT     E     131     E     131      5   12   19     3    5    6    9   10   12   16   17   21   25   29   35   39   40   42   44   47   49   51   51 
LCS_GDT     Q     132     Q     132      5   12   19     3    5    6    9   10   12   15   17   21   24   29   35   39   40   42   43   47   49   51   51 
LCS_GDT     T     133     T     133      5    7   19     3    5    6    7    8    9   13   18   22   27   31   35   39   40   42   44   47   49   51   51 
LCS_GDT     G     134     G     134      5    7   19     3    4    5    7    9   10   13   18   22   27   31   33   35   37   39   43   44   48   51   51 
LCS_GDT     L     135     L     135      5    6   19     3    4    5    6    6    7    9    9   17   23   28   33   35   37   39   43   44   45   48   51 
LCS_GDT     F     136     F     136      5    6   17     3    4    5    6    6    7    9    9   10   12   12   14   15   17   27   37   40   42   44   47 
LCS_GDT     L     137     L     137      5    6   10     3    4    5    6    6    7    9    9   10   12   13   14   16   17   23   28   37   37   42   44 
LCS_GDT     W     138     W     138      5    6   10     3    4    5    6    8    8    9    9   10   12   13   14   16   21   27   30   32   33   35   42 
LCS_GDT     L     139     L     139      4    6   10     3    3    5    6    8    8    9    9   10   12   13   14   15   17   27   30   32   33   35   38 
LCS_GDT     E     140     E     140      4    6   10     0    3    5    6    6    7    9    9   10   12   12   14   15   17   19   21   24   33   33   35 
LCS_AVERAGE  LCS_A:  10.94  (   3.95    7.90   20.95 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     12     12     17     21     23     24     26     27     31     35     39     40     42     44     47     49     51     51 
GDT PERCENT_CA   8.33   9.09   9.09   9.09  12.88  15.91  17.42  18.18  19.70  20.45  23.48  26.52  29.55  30.30  31.82  33.33  35.61  37.12  38.64  38.64
GDT RMS_LOCAL    0.18   0.26   0.26   0.26   1.65   2.00   2.19   2.30   2.63   2.79   6.96   4.28   4.58   4.67   4.85   5.26   5.77   5.85   5.96   5.96
GDT RMS_ALL_CA  22.63  22.49  22.49  22.49  20.45  20.46  20.42  20.53  20.66  20.71  18.85  19.69  19.73  19.46  19.44  19.21  18.70  18.74  18.72  18.72

#      Molecule1      Molecule2       DISTANCE
LGA    G       9      G       9         37.348
LGA    K      10      K      10         32.635
LGA    G      11      G      11         26.392
LGA    F      12      F      12         20.768
LGA    L      13      L      13         18.903
LGA    L      14      L      14         17.694
LGA    R      15      R      15         20.016
LGA    L      16      L      16         22.909
LGA    D      17      D      17         27.577
LGA    Y      18      Y      18         30.635
LGA    G      19      G      19         35.743
LGA    K      20      K      20         35.575
LGA    D      21      D      21         33.468
LGA    L      22      L      22         25.949
LGA    V      23      V      23         27.207
LGA    R      24      R      24         33.391
LGA    Q      25      Q      25         29.367
LGA    I      26      I      26         25.121
LGA    E      27      E      27         31.772
LGA    E      28      E      28         34.527
LGA    F      29      F      29         28.912
LGA    L      30      L      30         31.252
LGA    E      31      E      31         38.385
LGA    E      32      E      32         36.721
LGA    K      33      K      33         33.094
LGA    G      34      G      34         31.834
LGA    I      35      I      35         26.464
LGA    H      36      H      36         24.606
LGA    A      37      A      37         21.544
LGA    A      38      A      38         19.111
LGA    H      39      H      39         12.737
LGA    I      40      I      40          7.841
LGA    S      41      S      41          1.216
LGA    A      42      A      42          1.405
LGA    I      43      I      43          1.322
LGA    G      44      G      44          0.815
LGA    A      45      A      45          1.159
LGA    V      46      V      46          3.637
LGA    R      47      R      47          2.998
LGA    S      48      S      48          1.494
LGA    A      49      A      49          2.295
LGA    V      50      V      50          2.036
LGA    I      51      I      51          2.345
LGA    G      52      G      52          3.135
LGA    Y      53      Y      53          3.964
LGA    Y      54      Y      54          1.922
LGA    D      55      D      55          2.263
LGA    Q      56      Q      56          0.944
LGA    E      57      E      57          1.401
LGA    K      58      K      58          2.673
LGA    K      59      K      59          2.034
LGA    E      60      E      60          3.037
LGA    Y      61      Y      61          3.347
LGA    V      62      V      62          2.130
LGA    K      63      K      63          1.169
LGA    K      64      K      64          2.576
LGA    E      65      E      65          5.553
LGA    L      66      L      66          7.194
LGA    M      67      M      67          9.227
LGA    E      68      E      68         11.740
LGA    P      69      P      69         10.194
LGA    L      70      L      70          9.253
LGA    E      71      E      71          8.958
LGA    I      72      I      72          7.262
LGA    L      73      L      73         10.001
LGA    S      74      S      74         10.053
LGA    L      75      L      75          5.856
LGA    S      76      S      76          8.910
LGA    G      77      G      77         10.240
LGA    N      78      N      78         16.945
LGA    V      79      V      79         22.132
LGA    S      80      S      80         25.262
LGA    M      81      M      81         29.970
LGA    K      82      K      82         30.744
LGA    D      83      D      83         35.492
LGA    S      84      S      84         37.622
LGA    K      85      K      85         33.470
LGA    P      86      P      86         29.498
LGA    F      87      F      87         24.212
LGA    C      88      C      88         21.139
LGA    H      89      H      89         16.305
LGA    I      90      I      90         11.059
LGA    H      91      H      91          7.759
LGA    V      92      V      92          5.038
LGA    L      93      L      93          9.450
LGA    L      94      L      94         14.166
LGA    G      95      G      95         18.117
LGA    K      96      K      96         23.483
LGA    D      97      D      97         27.918
LGA    G      98      G      98         28.357
LGA    E      99      E      99         25.786
LGA    V     100      V     100         18.781
LGA    Y     101      Y     101         15.441
LGA    G     102      G     102          9.079
LGA    G     103      G     103          6.153
LGA    H     104      H     104         10.148
LGA    L     105      L     105          9.871
LGA    F     106      F     106         16.795
LGA    S     107      S     107         20.373
LGA    A     108      A     108         21.531
LGA    E     109      E     109         26.364
LGA    V     110      V     110         25.222
LGA    F     111      F     111         26.453
LGA    A     112      A     112         23.862
LGA    C     113      C     113         21.100
LGA    E     114      E     114         18.620
LGA    V     115      V     115         15.404
LGA    F     116      F     116         14.277
LGA    V     117      V     117         11.197
LGA    L     118      L     118         12.163
LGA    P     119      P     119         11.119
LGA    L     120      L     120         15.628
LGA    S     121      S     121         18.464
LGA    G     122      G     122         21.050
LGA    E     123      E     123         20.435
LGA    A     124      A     124         16.741
LGA    P     125      P     125         13.325
LGA    E     126      E     126         11.877
LGA    R     127      R     127         12.068
LGA    A     128      A     128         17.186
LGA    F     129      F     129         17.157
LGA    D     130      D     130         12.678
LGA    E     131      E     131         12.258
LGA    Q     132      Q     132         11.980
LGA    T     133      T     133         12.854
LGA    G     134      G     134         17.445
LGA    L     135      L     135         19.091
LGA    F     136      F     136         25.274
LGA    L     137      L     137         27.650
LGA    W     138      W     138         33.594
LGA    L     139      L     139         38.219
LGA    E     140      E     140         44.463

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0     24    2.30    17.424    15.439     1.000

LGA_LOCAL      RMSD =  2.300  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.641  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 15.768  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.751252 * X  +  -0.428585 * Y  +  -0.501932 * Z  +  47.092934
  Y_new =  -0.407234 * X  +   0.297476 * Y  +  -0.863521 * Z  +   3.460310
  Z_new =   0.519404 * X  +   0.853126 * Y  +   0.048945 * Z  +  20.980606 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.513488   -1.628105  [ DEG:    86.7165    -93.2835 ]
  Theta =  -0.546154   -2.595439  [ DEG:   -31.2923   -148.7077 ]
  Phi   =  -0.496738    2.644855  [ DEG:   -28.4610    151.5390 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS168_4-D1                               
REMARK     2: T0312_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS168_4-D1.T0312_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0   24   2.30  15.439    15.77
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS168_4-D1
PFRMAT TS
TARGET T0312
MODEL 4
PARENT N/A
ATOM      9  CA  GLY     9      35.421   8.251  12.767  1.00 25.00           C
ATOM     10  CA  LYS    10      38.710   9.612  11.344  1.00 25.00           C
ATOM     11  CA  GLY    11      41.338   8.311  13.709  1.00 25.00           C
ATOM     12  CA  PHE    12      43.704  10.535  15.712  1.00 25.00           C
ATOM     13  CA  LEU    13      44.719   7.523  17.789  1.00 25.00           C
ATOM     14  CA  LEU    14      45.969   8.847  21.154  1.00 25.00           C
ATOM     15  CA  ARG    15      47.255   7.531  24.411  1.00 25.00           C
ATOM     16  CA  LEU    16      46.802   7.887  28.120  1.00 25.00           C
ATOM     17  CA  ASP    17      46.238  10.801  30.473  1.00 25.00           C
ATOM     18  CA  TYR    18      47.499  12.533  33.613  1.00 25.00           C
ATOM     19  CA  GLY    19      45.822  14.056  36.683  1.00 25.00           C
ATOM     20  CA  LYS    20      42.225  14.974  35.931  1.00 25.00           C
ATOM     21  CA  ASP    21      43.542  18.511  35.280  1.00 25.00           C
ATOM     22  CA  LEU    22      45.016  17.373  31.934  1.00 25.00           C
ATOM     23  CA  VAL    23      41.668  15.779  30.973  1.00 25.00           C
ATOM     24  CA  ARG    24      39.838  19.018  31.879  1.00 25.00           C
ATOM     25  CA  GLN    25      42.303  21.035  29.751  1.00 25.00           C
ATOM     26  CA  ILE    26      41.758  18.643  26.810  1.00 25.00           C
ATOM     27  CA  GLU    27      37.964  19.006  27.185  1.00 25.00           C
ATOM     28  CA  GLU    28      38.308  22.820  27.222  1.00 25.00           C
ATOM     29  CA  PHE    29      40.464  22.681  24.060  1.00 25.00           C
ATOM     30  CA  LEU    30      37.853  20.463  22.347  1.00 25.00           C
ATOM     31  CA  GLU    31      35.085  22.921  23.331  1.00 25.00           C
ATOM     32  CA  GLU    32      37.138  25.833  21.928  1.00 25.00           C
ATOM     33  CA  LYS    33      40.361  27.811  22.330  1.00 25.00           C
ATOM     34  CA  GLY    34      43.733  26.187  21.884  1.00 25.00           C
ATOM     35  CA  ILE    35      45.282  22.732  21.907  1.00 25.00           C
ATOM     36  CA  HIS    36      48.191  20.326  21.907  1.00 25.00           C
ATOM     37  CA  ALA    37      47.218  16.614  21.819  1.00 25.00           C
ATOM     38  CA  ALA    38      44.913  13.645  22.698  1.00 25.00           C
ATOM     39  CA  HIS    39      47.212  12.057  25.336  1.00 25.00           C
ATOM     40  CA  ILE    40      50.219  12.778  23.071  1.00 25.00           C
ATOM     41  CA  SER    41      53.399  12.968  21.033  1.00 25.00           C
ATOM     42  CA  ALA    42      51.486  14.400  18.066  1.00 25.00           C
ATOM     43  CA  ILE    43      48.285  13.640  16.110  1.00 25.00           C
ATOM     44  CA  GLY    44      47.404  15.149  12.737  1.00 25.00           C
ATOM     45  CA  ALA    45      47.626  12.089  10.426  1.00 25.00           C
ATOM     46  CA  VAL    46      45.499   9.094   9.387  1.00 25.00           C
ATOM     47  CA  ARG    47      48.243   8.034   6.978  1.00 25.00           C
ATOM     48  CA  SER    48      47.908   4.490   5.782  1.00 25.00           C
ATOM     49  CA  ALA    49      50.435   1.722   6.152  1.00 25.00           C
ATOM     50  CA  VAL    50      53.242   0.178   8.208  1.00 25.00           C
ATOM     51  CA  ILE    51      52.688  -0.226  11.951  1.00 25.00           C
ATOM     52  CA  GLY    52      52.315  -2.190  15.130  1.00 25.00           C
ATOM     53  CA  TYR    53      53.305  -4.682  17.887  1.00 25.00           C
ATOM     54  CA  TYR    54      50.772  -7.400  18.814  1.00 25.00           C
ATOM     55  CA  ASP    55      50.681 -10.758  20.690  1.00 25.00           C
ATOM     56  CA  GLN    56      51.468 -13.471  23.196  1.00 25.00           C
ATOM     57  CA  GLU    57      51.347 -16.771  21.197  1.00 25.00           C
ATOM     58  CA  LYS    58      55.117 -17.448  20.976  1.00 25.00           C
ATOM     59  CA  LYS    59      55.619 -15.416  17.868  1.00 25.00           C
ATOM     60  CA  GLU    60      53.131 -13.876  15.370  1.00 25.00           C
ATOM     61  CA  TYR    61      51.161 -10.831  14.229  1.00 25.00           C
ATOM     62  CA  VAL    62      51.513  -8.898  10.971  1.00 25.00           C
ATOM     63  CA  LYS    63      50.498  -5.407  10.064  1.00 25.00           C
ATOM     64  CA  LYS    64      48.802  -2.127   9.228  1.00 25.00           C
ATOM     65  CA  GLU    65      47.969   1.387  10.508  1.00 25.00           C
ATOM     66  CA  LEU    66      50.055   4.588  10.553  1.00 25.00           C
ATOM     67  CA  MET    67      52.653   5.838   7.986  1.00 25.00           C
ATOM     68  CA  GLU    68      54.626   7.749   5.342  1.00 25.00           C
ATOM     69  CA  PRO    69      53.674  11.403   5.820  1.00 25.00           C
ATOM     70  CA  LEU    70      50.651  13.677   5.774  1.00 25.00           C
ATOM     71  CA  GLU    71      51.080  15.481   9.113  1.00 25.00           C
ATOM     72  CA  ILE    72      52.408  14.338  12.472  1.00 25.00           C
ATOM     73  CA  LEU    73      52.804  10.545  12.235  1.00 25.00           C
ATOM     74  CA  SER    74      54.222   7.024  12.887  1.00 25.00           C
ATOM     75  CA  LEU    75      52.206   4.640  15.120  1.00 25.00           C
ATOM     76  CA  SER    76      49.627   2.088  16.298  1.00 25.00           C
ATOM     77  CA  GLY    77      49.450  -0.402  19.219  1.00 25.00           C
ATOM     78  CA  ASN    78      47.141  -2.259  16.833  1.00 25.00           C
ATOM     79  CA  VAL    79      46.272  -5.912  16.177  1.00 25.00           C
ATOM     80  CA  SER    80      46.617  -8.018  13.063  1.00 25.00           C
ATOM     81  CA  MET    81      44.290 -10.769  11.980  1.00 25.00           C
ATOM     82  CA  LYS    82      42.866 -14.039  10.698  1.00 25.00           C
ATOM     83  CA  ASP    83      39.272 -13.398   9.750  1.00 25.00           C
ATOM     84  CA  SER    84      39.001 -11.501  13.082  1.00 25.00           C
ATOM     85  CA  LYS    85      40.705  -8.753  15.152  1.00 25.00           C
ATOM     86  CA  PRO    86      41.449  -5.877  17.527  1.00 25.00           C
ATOM     87  CA  PHE    87      42.085  -2.322  16.249  1.00 25.00           C
ATOM     88  CA  CYS    88      41.343   0.990  14.516  1.00 25.00           C
ATOM     89  CA  HIS    89      43.917   3.735  14.204  1.00 25.00           C
ATOM     90  CA  ILE    90      46.531   6.495  13.573  1.00 25.00           C
ATOM     91  CA  HIS    91      49.148   8.650  15.284  1.00 25.00           C
ATOM     92  CA  VAL    92      50.329   9.579  18.781  1.00 25.00           C
ATOM     93  CA  LEU    93      53.810   9.785  17.137  1.00 25.00           C
ATOM     94  CA  LEU    94      57.268  11.375  17.319  1.00 25.00           C
ATOM     95  CA  GLY    95      56.408  15.062  17.394  1.00 25.00           C
ATOM     96  CA  LYS    96      59.283  15.778  19.757  1.00 25.00           C
ATOM     97  CA  ASP    97      61.982  13.176  20.324  1.00 25.00           C
ATOM     98  CA  GLY    98      60.278  12.401  23.610  1.00 25.00           C
ATOM     99  CA  GLU    99      59.194   8.781  24.124  1.00 25.00           C
ATOM    100  CA  VAL   100      56.315   8.524  21.693  1.00 25.00           C
ATOM    101  CA  TYR   101      53.046   8.096  23.684  1.00 25.00           C
ATOM    102  CA  GLY   102      52.177   5.375  21.192  1.00 25.00           C
ATOM    103  CA  GLY   103      48.488   4.430  20.682  1.00 25.00           C
ATOM    104  CA  HIS   104      44.943   3.772  22.018  1.00 25.00           C
ATOM    105  CA  LEU   105      44.706   1.582  18.956  1.00 25.00           C
ATOM    106  CA  PHE   106      40.914   1.431  19.482  1.00 25.00           C
ATOM    107  CA  SER   107      37.732  -0.474  18.793  1.00 25.00           C
ATOM    108  CA  ALA   108      35.844   2.256  20.612  1.00 25.00           C
ATOM    109  CA  GLU   109      36.128   1.345  24.311  1.00 25.00           C
ATOM    110  CA  VAL   110      39.074  -1.020  23.643  1.00 25.00           C
ATOM    111  CA  PHE   111      42.094  -0.865  25.992  1.00 25.00           C
ATOM    112  CA  ALA   112      44.994  -1.006  23.529  1.00 25.00           C
ATOM    113  CA  CYS   113      46.976   1.132  25.998  1.00 25.00           C
ATOM    114  CA  GLU   114      50.440   2.339  24.793  1.00 25.00           C
ATOM    115  CA  VAL   115      53.677   3.681  26.311  1.00 25.00           C
ATOM    116  CA  PHE   116      55.884   2.673  23.357  1.00 25.00           C
ATOM    117  CA  VAL   117      59.109   4.147  21.979  1.00 25.00           C
ATOM    118  CA  LEU   118      58.859   5.500  18.433  1.00 25.00           C
ATOM    119  CA  PRO   119      62.603   5.918  18.219  1.00 25.00           C
ATOM    120  CA  LEU   120      61.927   6.359  14.547  1.00 25.00           C
ATOM    121  CA  SER   121      65.405   6.066  12.916  1.00 25.00           C
ATOM    122  CA  GLY   122      66.375   2.539  12.036  1.00 25.00           C
ATOM    123  CA  GLU   123      62.769   1.658  12.847  1.00 25.00           C
ATOM    124  CA  ALA   124      59.876   0.519  15.063  1.00 25.00           C
ATOM    125  CA  PRO   125      58.822   0.283  18.640  1.00 25.00           C
ATOM    126  CA  GLU   126      58.279  -1.540  21.905  1.00 25.00           C
ATOM    127  CA  ARG   127      55.316  -2.905  23.817  1.00 25.00           C
ATOM    128  CA  ALA   128      51.651  -3.362  22.783  1.00 25.00           C
ATOM    129  CA  PHE   129      50.498  -4.878  26.062  1.00 25.00           C
ATOM    130  CA  ASP   130      53.071  -6.286  28.484  1.00 25.00           C
ATOM    131  CA  GLU   131      54.338  -8.784  30.976  1.00 25.00           C
ATOM    132  CA  GLN   132      52.681  -7.952  34.242  1.00 25.00           C
ATOM    133  CA  THR   133      49.114  -8.996  33.447  1.00 25.00           C
ATOM    134  CA  GLY   134      46.244  -8.243  31.070  1.00 25.00           C
ATOM    135  CA  LEU   135      44.896 -11.570  32.361  1.00 25.00           C
ATOM    136  CA  PHE   136      43.032 -13.846  34.682  1.00 25.00           C
ATOM    137  CA  LEU   137      39.405 -13.986  35.789  1.00 25.00           C
ATOM    138  CA  TRP   138      35.844 -15.386  36.126  1.00 25.00           C
ATOM    139  CA  LEU   139      34.264 -17.575  38.867  1.00 25.00           C
ATOM    140  CA  GLU   140      31.203 -19.067  40.558  1.00 25.00           C
TER
END
