
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0312TS393_2-D1
# Molecule2: number of CA atoms  132 ( 1043),  selected  132 , name T0312_D1.pdb
# PARAMETERS: T0312TS393_2-D1.T0312_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        40 - 76          4.87    18.60
  LONGEST_CONTINUOUS_SEGMENT:    37        41 - 77          4.81    18.77
  LCS_AVERAGE:     22.10

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        21 - 38          1.67    24.69
  LCS_AVERAGE:      8.03

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        21 - 34          0.99    25.93
  LCS_AVERAGE:      4.07

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     G       9     G       9      3    7   35     3    3    4    7   16   17   17   18   21   25   29   30   31   33   38   41   43   46   50   52 
LCS_GDT     K      10     K      10      4    8   35     3    4    4    7    9   16   18   21   22   25   29   30   31   33   38   41   43   46   50   52 
LCS_GDT     G      11     G      11      4    8   35     3    4    5    7   13   17   18   21   22   25   29   30   32   34   38   41   43   46   50   53 
LCS_GDT     F      12     F      12      4    8   35     3    4    5    7   10   11   18   21   22   25   29   30   32   33   34   36   37   41   47   50 
LCS_GDT     L      13     L      13      4    8   35     3    4    6    8   13   17   18   21   22   25   29   30   32   33   34   36   37   39   40   44 
LCS_GDT     L      14     L      14      4    8   35     3    3    6    7   12   16   18   21   22   25   29   30   32   33   34   38   40   45   48   53 
LCS_GDT     R      15     R      15      5    8   35     3    4    6    7   10   11   16   18   22   25   29   30   32   33   34   41   44   46   49   53 
LCS_GDT     L      16     L      16      5    8   35     3    4    6    7   10   13   18   21   22   25   29   30   34   37   41   43   45   49   52   55 
LCS_GDT     D      17     D      17      5    8   35     3    3    6    7   10   11   14   17   22   25   29   30   35   37   41   43   47   49   52   55 
LCS_GDT     Y      18     Y      18      5    8   35     3    4    6    7   10   11   14   16   22   25   29   30   35   37   41   43   47   49   50   52 
LCS_GDT     G      19     G      19      5    8   35     3    4    6    7   12   16   18   21   22   25   29   30   32   35   37   43   47   49   50   51 
LCS_GDT     K      20     K      20      3   17   35     3    3    3    9   12   16   18   21   22   25   29   30   35   37   41   43   47   49   50   52 
LCS_GDT     D      21     D      21     14   18   35    11   13   14   15   16   17   18   18   22   24   27   27   31   32   35   39   45   49   50   52 
LCS_GDT     L      22     L      22     14   18   35    11   13   14   15   16   17   18   18   20   22   25   27   29   32   38   43   45   49   52   55 
LCS_GDT     V      23     V      23     14   18   35    11   13   14   15   16   17   18   18   22   24   27   29   32   33   36   38   40   44   49   50 
LCS_GDT     R      24     R      24     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   33   36   38   40   43   48   48 
LCS_GDT     Q      25     Q      25     14   18   35    11   13   14   15   16   17   18   21   22   25   29   29   32   35   39   41   45   49   52   55 
LCS_GDT     I      26     I      26     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   35   37   39   43   48   50   54 
LCS_GDT     E      27     E      27     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   34   36   38   39   42   46   50 
LCS_GDT     E      28     E      28     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   34   36   38   41   44   46   50 
LCS_GDT     F      29     F      29     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   35   37   39   41   46   49   55 
LCS_GDT     L      30     L      30     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   34   37   41   46   49   54   56 
LCS_GDT     E      31     E      31     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   33   35   37   41   46   49   53 
LCS_GDT     E      32     E      32     14   18   35    11   13   14   15   16   17   18   21   22   25   29   30   32   34   35   39   42   46   49   55 
LCS_GDT     K      33     K      33     14   18   35     3    4    7   12   15   17   18   18   19   22   26   29   32   34   39   43   47   49   54   56 
LCS_GDT     G      34     G      34     14   18   35    10   13   14   15   16   17   18   21   22   25   29   30   32   37   40   44   47   51   54   56 
LCS_GDT     I      35     I      35      5   18   35     4   12   14   15   16   17   18   21   22   25   29   31   34   40   44   47   50   51   54   56 
LCS_GDT     H      36     H      36      5   18   35     3    6   13   15   16   17   18   18   20   22   25   27   30   34   38   44   47   51   54   56 
LCS_GDT     A      37     A      37      5   18   35     3    5    7   14   16   17   18   18   19   21   26   31   36   41   44   47   50   51   54   56 
LCS_GDT     A      38     A      38      3   18   35     0    3    7   13   16   17   18   18   19   22   26   31   36   41   44   47   50   51   54   56 
LCS_GDT     H      39     H      39      3    7   35     2    3    3    5    7   11   13   15   18   21   26   31   36   41   44   47   50   51   54   56 
LCS_GDT     I      40     I      40      3    7   37     1    3    5    8   14   17   18   21   22   25   29   31   36   41   44   47   50   51   54   56 
LCS_GDT     S      41     S      41      3    5   37     0    3    4    7   12   16   18   21   22   25   29   33   36   41   44   47   50   51   54   56 
LCS_GDT     A      42     A      42      3    4   37     1    3    5    7   12   20   24   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     I      43     I      43      3    4   37     2    3    3    6   12   20   25   27   30   33   35   38   40   42   44   47   50   51   53   56 
LCS_GDT     G      44     G      44      3    8   37     1    4    9   14   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     A      45     A      45      5   11   37     2    4    8   15   18   20   23   26   30   33   35   37   39   42   44   47   50   51   54   56 
LCS_GDT     V      46     V      46      5   11   37     3    4    8   15   18   20   23   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     R      47     R      47      5   11   37     3    4    7    8   16   20   23   26   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     S      48     S      48      5   11   37     3    5    8   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     A      49     A      49      5   11   37     3    4    8   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     V      50     V      50      5   11   37     3    4    8   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     I      51     I      51      5   11   37     3    4    8   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     G      52     G      52      5   11   37     2    4    8    9   13   19   23   26   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     Y      53     Y      53      4   11   37     1    4    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     Y      54     Y      54      4   11   37     2    5    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     D      55     D      55      4   11   37     3    4    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     Q      56     Q      56      3   11   37     3    4    8    9   12   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     E      57     E      57      3   12   37     3    5    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     K      58     K      58      4   12   37     4    5    7   10   14   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     K      59     K      59      4   12   37     4    5    7   11   18   20   25   27   30   33   35   38   40   42   43   47   50   51   54   56 
LCS_GDT     E      60     E      60      5   12   37     4    5    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     Y      61     Y      61      5   12   37     4    5    7   10   13   18   23   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     V      62     V      62      5   12   37     3    5    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     K      63     K      63      5   12   37     3    5    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     K      64     K      64      5   12   37     3    5    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     E      65     E      65      5   12   37     2    4    7   13   18   20   23   27   30   33   35   36   39   42   43   45   50   51   52   54 
LCS_GDT     L      66     L      66      5   12   37     3    4    9   15   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     M      67     M      67      5   12   37     3    4    9   14   18   20   25   27   30   33   35   38   40   42   43   46   50   51   52   54 
LCS_GDT     E      68     E      68      5   12   37     3    5    7   13   17   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     P      69     P      69      3   10   37     3    3    6   11   14   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     L      70     L      70      4   10   37     3    4    5    8   12   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     E      71     E      71      4   10   37     3    4    6    9   15   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     I      72     I      72      4   10   37     3    4    6    8   15   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     L      73     L      73      4    7   37     3    5    6    8   12   17   24   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     S      74     S      74      3    7   37     3    3    8   10   12   15   19   23   27   31   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     L      75     L      75      4    7   37     3    3    5    6    8   10   14   17   24   31   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     S      76     S      76      4    7   37     3    3    5    6    8   10   12   17   20   23   27   30   35   37   41   43   47   51   54   56 
LCS_GDT     G      77     G      77      4    7   37     3    3    4    6    8   10   13   17   20   23   27   29   35   37   41   43   47   49   53   56 
LCS_GDT     N      78     N      78      4    6   26     3    3    5    6    8   10   13   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     V      79     V      79      3    7   26     3    3    4    6    8    9   12   17   20   23   27   29   35   37   41   43   47   49   50   53 
LCS_GDT     S      80     S      80      3    7   26     3    3    5    6    8    9   13   17   20   23   27   29   35   37   41   43   47   49   50   55 
LCS_GDT     M      81     M      81      4    7   26     3    4    5    5    7   10   13   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     K      82     K      82      4    7   26     3    4    5    5    8    9   11   13   18   22   24   30   34   37   41   43   47   49   52   55 
LCS_GDT     D      83     D      83      4    7   26     3    4    5    5    8    9   11   13   16   22   24   30   34   37   41   43   45   49   52   55 
LCS_GDT     S      84     S      84      4   11   26     3    4    5    8   10   11   14   17   20   23   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     K      85     K      85      4   11   26     3    4    7    8   10   11   14   17   20   23   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     P      86     P      86      4   11   26     3    5    7    8   10   11   14   15   19   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     F      87     F      87      4   11   26     3    5    7    8   10   11   14   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     C      88     C      88      4   11   26     3    4    4    8   10   11   14   17   20   23   27   30   35   37   41   43   47   49   52   56 
LCS_GDT     H      89     H      89      4   11   26     3    5    7    8   10   11   14   15   20   22   27   31   36   41   44   47   50   51   54   56 
LCS_GDT     I      90     I      90      4   11   26     3    5    7    8   12   14   19   22   28   32   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     H      91     H      91      4   11   26     3    5    7    8   10   13   14   18   23   32   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     V      92     V      92      4   11   26     3    4    6    8   10   11   14   16   20   23   30   34   37   41   43   44   48   49   52   55 
LCS_GDT     L      93     L      93      4   11   26     3    5    7    8   10   11   14   16   19   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     L      94     L      94      4   11   26     3    3    5    8    9   11   14   15   19   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     G      95     G      95      4    7   26     3    3    5    6    8   12   14   17   19   23   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     K      96     K      96      4    7   26     3    3    5    6    8   12   14   17   19   24   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     D      97     D      97      4   10   26     3    3    5    7    9   12   14   16   21   24   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     G      98     G      98      4   10   24     3    3    5    8   10   12   14   16   18   22   25   30   35   37   41   43   47   49   52   55 
LCS_GDT     E      99     E      99      3   10   23     3    3    4    5   10   12   14   16   18   24   25   30   34   37   41   43   47   49   52   55 
LCS_GDT     V     100     V     100      3   10   23     3    3    4    8   10   13   18   21   23   25   26   30   35   37   41   43   47   49   52   55 
LCS_GDT     Y     101     Y     101      3   10   23     3    3    6    8   11   14   18   21   25   26   27   30   35   37   41   43   47   49   52   55 
LCS_GDT     G     102     G     102      4   10   23     3    4    6   11   13   15   20   24   26   29   31   33   35   37   43   44   47   49   53   55 
LCS_GDT     G     103     G     103      4   10   23     3    4    6   13   18   20   25   27   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     H     104     H     104      4   10   23     3    4    8    9   12   17   21   26   30   33   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     L     105     L     105      4   10   23     3    4    6    8   10   12   14   16   19   23   27   30   35   37   41   47   50   51   54   56 
LCS_GDT     F     106     F     106      4   10   23     3    3    5    7    9   12   14   17   20   23   27   29   35   37   41   43   47   49   52   55 
LCS_GDT     S     107     S     107      4    6   21     3    3    5    5    8   10   13   14   18   22   25   30   34   37   41   43   47   49   52   55 
LCS_GDT     A     108     A     108      3    6   20     3    3    4    5    8   10   11   13   15   16   18   20   24   27   30   34   40   49   52   55 
LCS_GDT     E     109     E     109      4    6   20     3    4    5    5    7   10   14   14   16   17   19   21   24   27   32   37   45   49   52   55 
LCS_GDT     V     110     V     110      4    8   20     3    4    4    7    8   10   14   14   16   17   22   26   32   35   40   43   45   49   52   55 
LCS_GDT     F     111     F     111      5   10   20     3    4    6    7    9   10   14   14   15   16   18   20   23   25   30   31   32   36   40   48 
LCS_GDT     A     112     A     112      5   10   20     3    5    6    7    9   10   14   14   15   16   17   20   23   25   30   31   34   36   43   45 
LCS_GDT     C     113     C     113      5   10   20     3    5    6    7    9   10   12   13   15   16   16   19   21   25   30   31   34   36   43   45 
LCS_GDT     E     114     E     114      5   10   20     3    5    6    7    9   10   12   13   15   16   17   20   23   27   32   36   37   39   41   44 
LCS_GDT     V     115     V     115      5   10   20     3    5    6    7    9   10   12   13   15   16   18   22   23   26   30   33   36   39   41   45 
LCS_GDT     F     116     F     116      6   10   20     4    5    6    7    9   10   12   13   15   16   17   19   26   27   30   33   36   40   45   49 
LCS_GDT     V     117     V     117      6   10   20     4    5    6    7    8   10   12   13   15   16   16   27   29   34   40   42   45   47   49   51 
LCS_GDT     L     118     L     118      6   10   20     4    5    6    6    8   10   12   13   15   16   16   17   20   24   26   26   34   37   42   47 
LCS_GDT     P     119     P     119      6   10   20     4    5    6    7    9   10   12   13   15   16   16   18   21   24   26   27   30   37   42   45 
LCS_GDT     L     120     L     120      6   10   20     4    5    6    6    9   10   12   13   15   17   17   20   21   24   28   30   34   37   42   47 
LCS_GDT     S     121     S     121      6   10   20     4    5    6    8   10   10   12   13   15   17   17   20   21   24   27   30   32   36   42   45 
LCS_GDT     G     122     G     122      5   10   20     3    4    6    8   10   11   12   13   15   17   17   20   21   24   28   30   32   36   42   47 
LCS_GDT     E     123     E     123      5   10   20     3    5    6    8   10   11   12   13   14   17   17   20   21   24   28   30   32   36   42   47 
LCS_GDT     A     124     A     124      5   10   20     3    5    6    8   10   11   12   13   14   17   17   20   21   24   28   30   34   37   42   47 
LCS_GDT     P     125     P     125      5   10   19     3    5    6    8   10   11   12   13   14   17   17   20   21   24   28   30   32   36   42   47 
LCS_GDT     E     126     E     126      5   10   19     3    5    5    7   10   11   12   13   14   17   17   20   21   24   28   30   32   34   42   47 
LCS_GDT     R     127     R     127      5   10   19     3    5    6    8   10   11   12   13   14   17   17   20   24   35   39   42   45   47   50   54 
LCS_GDT     A     128     A     128      6   10   19     3    4    7    8   10   10   12   13   14   17   17   20   21   24   28   30   34   38   43   51 
LCS_GDT     F     129     F     129      6   10   19     3    4    7    8   10   11   12   13   14   17   19   22   33   41   44   47   50   51   54   56 
LCS_GDT     D     130     D     130      6    9   19     3    4    7    7    8   11   12   19   23   29   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     E     131     E     131      6    9   19     3    4    7    7    8   11   13   15   20   25   31   34   38   41   44   47   50   51   54   56 
LCS_GDT     Q     132     Q     132      6    9   19     3    4    7    8   12   16   20   26   29   32   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     T     133     T     133      6    9   19     3    4    7    7    9   13   20   26   29   32   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     G     134     G     134      5    9   19     3    4    7    8   10   13   20   23   28   32   35   38   40   42   44   47   50   51   54   56 
LCS_GDT     L     135     L     135      5    8   19     3    4    5    6    7    8   11   13   14   17   19   33   36   39   43   45   48   50   53   55 
LCS_GDT     F     136     F     136      5    8   18     3    4    5    6    7    8    8    8    8   17   19   19   20   22   22   39   40   46   47   51 
LCS_GDT     L     137     L     137      5    8   11     3    4    5    6    7    8    8    8    8    9   11   16   16   18   31   36   42   45   49   51 
LCS_GDT     W     138     W     138      5    8   11     3    4    5    6    7    8    8    8    8    9    9   16   16   18   20   21   29   40   44   50 
LCS_GDT     L     139     L     139      3    8   11     3    3    4    6    7    8    8    8    8    9   10   16   16   36   37   39   42   45   49   51 
LCS_GDT     E     140     E     140      0    8   11     0    2    4    6    7    8    8    8    8    9   10   16   29   31   37   37   39   45   45   49 
LCS_AVERAGE  LCS_A:  11.40  (   4.07    8.03   22.10 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     14     15     18     20     25     27     30     33     35     38     40     42     44     47     50     51     54     56 
GDT PERCENT_CA   8.33   9.85  10.61  11.36  13.64  15.15  18.94  20.45  22.73  25.00  26.52  28.79  30.30  31.82  33.33  35.61  37.88  38.64  40.91  42.42
GDT RMS_LOCAL    0.18   0.33   0.57   0.91   1.71   1.89   2.46   2.64   2.91   3.14   3.42   3.88   4.11   4.25   5.19   5.37   5.60   5.68   6.38   6.53
GDT RMS_ALL_CA  26.71  26.45  25.82  24.95  22.11  21.74  20.27  20.25  20.62  20.18  19.61  18.76  18.59  18.73  17.99  17.99  17.95  17.98  17.77  17.73

#      Molecule1      Molecule2       DISTANCE
LGA    G       9      G       9         17.148
LGA    K      10      K      10         16.048
LGA    G      11      G      11         16.491
LGA    F      12      F      12         18.571
LGA    L      13      L      13         21.003
LGA    L      14      L      14         22.006
LGA    R      15      R      15         21.028
LGA    L      16      L      16         24.064
LGA    D      17      D      17         27.561
LGA    Y      18      Y      18         28.043
LGA    G      19      G      19         31.700
LGA    K      20      K      20         34.706
LGA    D      21      D      21         35.298
LGA    L      22      L      22         29.848
LGA    V      23      V      23         30.155
LGA    R      24      R      24         36.782
LGA    Q      25      Q      25         35.928
LGA    I      26      I      26         30.856
LGA    E      27      E      27         35.222
LGA    E      28      E      28         39.985
LGA    F      29      F      29         35.736
LGA    L      30      L      30         33.772
LGA    E      31      E      31         40.613
LGA    E      32      E      32         41.638
LGA    K      33      K      33         38.967
LGA    G      34      G      34         36.968
LGA    I      35      I      35         30.601
LGA    H      36      H      36         29.230
LGA    A      37      A      37         24.742
LGA    A      38      A      38         22.441
LGA    H      39      H      39         22.409
LGA    I      40      I      40         18.227
LGA    S      41      S      41         13.720
LGA    A      42      A      42          7.022
LGA    I      43      I      43          3.859
LGA    G      44      G      44          0.531
LGA    A      45      A      45          4.390
LGA    V      46      V      46          3.798
LGA    R      47      R      47          4.788
LGA    S      48      S      48          2.391
LGA    A      49      A      49          2.316
LGA    V      50      V      50          2.285
LGA    I      51      I      51          2.331
LGA    G      52      G      52          4.732
LGA    Y      53      Y      53          1.683
LGA    Y      54      Y      54          0.853
LGA    D      55      D      55          1.814
LGA    Q      56      Q      56          3.295
LGA    E      57      E      57          1.788
LGA    K      58      K      58          3.050
LGA    K      59      K      59          3.459
LGA    E      60      E      60          2.714
LGA    Y      61      Y      61          3.934
LGA    V      62      V      62          1.665
LGA    K      63      K      63          1.806
LGA    K      64      K      64          1.389
LGA    E      65      E      65          4.282
LGA    L      66      L      66          1.530
LGA    M      67      M      67          2.345
LGA    E      68      E      68          1.743
LGA    P      69      P      69          3.422
LGA    L      70      L      70          3.757
LGA    E      71      E      71          3.322
LGA    I      72      I      72          3.530
LGA    L      73      L      73          5.055
LGA    S      74      S      74          8.976
LGA    L      75      L      75          8.155
LGA    S      76      S      76         13.263
LGA    G      77      G      77         14.539
LGA    N      78      N      78         21.349
LGA    V      79      V      79         22.820
LGA    S      80      S      80         26.874
LGA    M      81      M      81         31.211
LGA    K      82      K      82         32.440
LGA    D      83      D      83         36.016
LGA    S      84      S      84         38.898
LGA    K      85      K      85         35.906
LGA    P      86      P      86         30.930
LGA    F      87      F      87         24.705
LGA    C      88      C      88         21.530
LGA    H      89      H      89         15.762
LGA    I      90      I      90          9.421
LGA    H      91      H      91          7.798
LGA    V      92      V      92          6.973
LGA    L      93      L      93          9.959
LGA    L      94      L      94         12.876
LGA    G      95      G      95         14.095
LGA    K      96      K      96         17.347
LGA    D      97      D      97         21.801
LGA    G      98      G      98         24.499
LGA    E      99      E      99         19.234
LGA    V     100      V     100         13.878
LGA    Y     101      Y     101         10.878
LGA    G     102      G     102          6.887
LGA    G     103      G     103          2.650
LGA    H     104      H     104          5.192
LGA    L     105      L     105         11.397
LGA    F     106      F     106         18.070
LGA    S     107      S     107         21.432
LGA    A     108      A     108         25.418
LGA    E     109      E     109         29.755
LGA    V     110      V     110         26.820
LGA    F     111      F     111         28.172
LGA    A     112      A     112         24.928
LGA    C     113      C     113         20.829
LGA    E     114      E     114         17.091
LGA    V     115      V     115         13.946
LGA    F     116      F     116         11.348
LGA    V     117      V     117          8.738
LGA    L     118      L     118         14.583
LGA    P     119      P     119         15.624
LGA    L     120      L     120         21.785
LGA    S     121      S     121         25.919
LGA    G     122      G     122         27.151
LGA    E     123      E     123         25.791
LGA    A     124      A     124         20.435
LGA    P     125      P     125         15.819
LGA    E     126      E     126         13.443
LGA    R     127      R     127         11.167
LGA    A     128      A     128         15.676
LGA    F     129      F     129         15.028
LGA    D     130      D     130         13.813
LGA    E     131      E     131         16.671
LGA    Q     132      Q     132         11.309
LGA    T     133      T     133          8.386
LGA    G     134      G     134         11.203
LGA    L     135      L     135         11.413
LGA    F     136      F     136         14.819
LGA    L     137      L     137         11.131
LGA    W     138      W     138         12.101
LGA    L     139      L     139          8.856
LGA    E     140      E     140         10.305

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0     27    2.64    19.318    16.747     0.986

LGA_LOCAL      RMSD =  2.638  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.320  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 16.676  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.910081 * X  +   0.052878 * Y  +   0.411043 * Z  +  48.530197
  Y_new =   0.297606 * X  +  -0.606856 * Y  +   0.736991 * Z  +   2.677171
  Z_new =   0.288415 * X  +   0.793051 * Y  +   0.536551 * Z  +  20.651348 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.975971   -2.165621  [ DEG:    55.9190   -124.0810 ]
  Theta =  -0.292571   -2.849022  [ DEG:   -16.7631   -163.2369 ]
  Phi   =   2.825543   -0.316050  [ DEG:   161.8917    -18.1083 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS393_2-D1                               
REMARK     2: T0312_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS393_2-D1.T0312_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0   27   2.64  16.747    16.68
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS393_2-D1
PFRMAT TS
TARGET T0312
MODEL 2
PARENT N/A
ATOM      9  CA  GLY     9      52.038  10.848  31.074  1.00 25.00           C
ATOM     10  CA  LYS    10      52.046  12.113  27.442  1.00 25.00           C
ATOM     11  CA  GLY    11      48.979  10.664  25.663  1.00 25.00           C
ATOM     12  CA  PHE    12      47.969   7.626  23.530  1.00 25.00           C
ATOM     13  CA  LEU    13      45.049   5.301  24.105  1.00 25.00           C
ATOM     14  CA  LEU    14      42.312   6.368  21.602  1.00 25.00           C
ATOM     15  CA  ARG    15      41.373   6.892  17.920  1.00 25.00           C
ATOM     16  CA  LEU    16      38.273   4.917  18.649  1.00 25.00           C
ATOM     17  CA  ASP    17      34.818   5.492  17.056  1.00 25.00           C
ATOM     18  CA  TYR    18      31.147   5.823  16.125  1.00 25.00           C
ATOM     19  CA  GLY    19      27.808   4.107  16.750  1.00 25.00           C
ATOM     20  CA  LYS    20      26.159   7.102  18.281  1.00 25.00           C
ATOM     21  CA  ASP    21      25.851   6.257  22.004  1.00 25.00           C
ATOM     22  CA  LEU    22      29.640   5.735  22.222  1.00 25.00           C
ATOM     23  CA  VAL    23      30.228   9.109  20.506  1.00 25.00           C
ATOM     24  CA  ARG    24      27.833  10.806  22.966  1.00 25.00           C
ATOM     25  CA  GLN    25      29.673   9.191  25.911  1.00 25.00           C
ATOM     26  CA  ILE    26      33.026  10.402  24.511  1.00 25.00           C
ATOM     27  CA  GLU    27      31.618  13.943  24.134  1.00 25.00           C
ATOM     28  CA  GLU    28      30.351  13.849  27.748  1.00 25.00           C
ATOM     29  CA  PHE    29      33.796  12.688  28.951  1.00 25.00           C
ATOM     30  CA  LEU    30      35.463  15.532  27.003  1.00 25.00           C
ATOM     31  CA  GLU    31      33.036  18.054  28.558  1.00 25.00           C
ATOM     32  CA  GLU    32      33.809  16.680  32.050  1.00 25.00           C
ATOM     33  CA  LYS    33      35.330  20.035  32.927  1.00 25.00           C
ATOM     34  CA  GLY    34      37.897  19.582  30.121  1.00 25.00           C
ATOM     35  CA  ILE    35      40.221  16.906  28.689  1.00 25.00           C
ATOM     36  CA  HIS    36      41.768  16.528  25.172  1.00 25.00           C
ATOM     37  CA  ALA    37      42.545  12.796  25.181  1.00 25.00           C
ATOM     38  CA  ALA    38      41.435  11.707  21.707  1.00 25.00           C
ATOM     39  CA  HIS    39      38.165  12.710  20.091  1.00 25.00           C
ATOM     40  CA  ILE    40      40.474  14.168  17.421  1.00 25.00           C
ATOM     41  CA  SER    41      42.780  15.936  14.989  1.00 25.00           C
ATOM     42  CA  ALA    42      45.691  14.315  16.859  1.00 25.00           C
ATOM     43  CA  ILE    43      47.412  11.568  14.781  1.00 25.00           C
ATOM     44  CA  GLY    44      48.262  14.840  12.962  1.00 25.00           C
ATOM     45  CA  ALA    45      51.273  14.110  10.738  1.00 25.00           C
ATOM     46  CA  VAL    46      50.681  10.328  11.069  1.00 25.00           C
ATOM     47  CA  ARG    47      51.475   9.516   7.440  1.00 25.00           C
ATOM     48  CA  SER    48      48.953   6.665   7.268  1.00 25.00           C
ATOM     49  CA  ALA    49      49.445   3.892   9.782  1.00 25.00           C
ATOM     50  CA  VAL    50      50.418   0.398  10.787  1.00 25.00           C
ATOM     51  CA  ILE    51      52.336  -1.117  13.684  1.00 25.00           C
ATOM     52  CA  GLY    52      53.768  -2.673  16.806  1.00 25.00           C
ATOM     53  CA  TYR    53      50.643  -4.900  17.044  1.00 25.00           C
ATOM     54  CA  TYR    54      51.928  -7.974  18.947  1.00 25.00           C
ATOM     55  CA  ASP    55      52.075 -11.531  20.290  1.00 25.00           C
ATOM     56  CA  GLN    56      50.311 -14.909  20.688  1.00 25.00           C
ATOM     57  CA  GLU    57      53.730 -15.924  22.030  1.00 25.00           C
ATOM     58  CA  LYS    58      56.506 -16.664  19.581  1.00 25.00           C
ATOM     59  CA  LYS    59      57.656 -14.464  16.633  1.00 25.00           C
ATOM     60  CA  GLU    60      54.432 -14.226  14.642  1.00 25.00           C
ATOM     61  CA  TYR    61      51.279 -12.100  14.444  1.00 25.00           C
ATOM     62  CA  VAL    62      49.971  -9.810  11.632  1.00 25.00           C
ATOM     63  CA  LYS    63      48.936  -6.150  11.394  1.00 25.00           C
ATOM     64  CA  LYS    64      46.977  -3.372   9.727  1.00 25.00           C
ATOM     65  CA  GLU    65      43.956  -1.958   7.926  1.00 25.00           C
ATOM     66  CA  LEU    66      45.703   1.383   7.532  1.00 25.00           C
ATOM     67  CA  MET    67      44.095   1.797   4.135  1.00 25.00           C
ATOM     68  CA  GLU    68      44.917   5.521   4.149  1.00 25.00           C
ATOM     69  CA  PRO    69      41.329   6.629   4.554  1.00 25.00           C
ATOM     70  CA  LEU    70      42.874  10.019   5.532  1.00 25.00           C
ATOM     71  CA  GLU    71      42.439  11.646   8.927  1.00 25.00           C
ATOM     72  CA  ILE    72      44.390  12.163  12.197  1.00 25.00           C
ATOM     73  CA  LEU    73      43.466   8.465  12.704  1.00 25.00           C
ATOM     74  CA  SER    74      42.474   4.891  13.389  1.00 25.00           C
ATOM     75  CA  LEU    75      46.195   4.303  14.092  1.00 25.00           C
ATOM     76  CA  SER    76      46.008   0.566  13.626  1.00 25.00           C
ATOM     77  CA  GLY    77      46.457  -2.161  16.215  1.00 25.00           C
ATOM     78  CA  ASN    78      44.327  -4.736  14.364  1.00 25.00           C
ATOM     79  CA  VAL    79      46.148  -7.160  16.714  1.00 25.00           C
ATOM     80  CA  SER    80      44.790 -10.721  17.096  1.00 25.00           C
ATOM     81  CA  MET    81      42.044 -10.755  14.459  1.00 25.00           C
ATOM     82  CA  LYS    82      40.117 -13.312  12.375  1.00 25.00           C
ATOM     83  CA  ASP    83      39.315 -16.622  14.195  1.00 25.00           C
ATOM     84  CA  SER    84      38.395 -14.360  17.133  1.00 25.00           C
ATOM     85  CA  LYS    85      38.962 -10.899  18.653  1.00 25.00           C
ATOM     86  CA  PRO    86      40.647  -7.551  19.302  1.00 25.00           C
ATOM     87  CA  PHE    87      42.023  -4.040  18.809  1.00 25.00           C
ATOM     88  CA  CYS    88      40.942  -0.490  18.118  1.00 25.00           C
ATOM     89  CA  HIS    89      43.541   2.221  17.944  1.00 25.00           C
ATOM     90  CA  ILE    90      46.424   4.389  19.293  1.00 25.00           C
ATOM     91  CA  HIS    91      46.443   8.105  18.710  1.00 25.00           C
ATOM     92  CA  VAL    92      48.130  11.268  19.969  1.00 25.00           C
ATOM     93  CA  LEU    93      51.593  12.072  21.366  1.00 25.00           C
ATOM     94  CA  LEU    94      53.210  14.326  18.864  1.00 25.00           C
ATOM     95  CA  GLY    95      51.170  15.884  16.091  1.00 25.00           C
ATOM     96  CA  LYS    96      52.234  18.864  14.022  1.00 25.00           C
ATOM     97  CA  ASP    97      55.347  16.858  13.025  1.00 25.00           C
ATOM     98  CA  GLY    98      57.114  13.678  14.094  1.00 25.00           C
ATOM     99  CA  GLU    99      54.126  11.416  14.752  1.00 25.00           C
ATOM    100  CA  VAL   100      51.800   9.525  17.003  1.00 25.00           C
ATOM    101  CA  TYR   101      51.151   6.367  18.931  1.00 25.00           C
ATOM    102  CA  GLY   102      51.289   4.341  15.718  1.00 25.00           C
ATOM    103  CA  GLY   103      50.120   1.395  17.815  1.00 25.00           C
ATOM    104  CA  HIS   104      48.551  -0.729  20.568  1.00 25.00           C
ATOM    105  CA  LEU   105      45.119  -0.308  22.012  1.00 25.00           C
ATOM    106  CA  PHE   106      41.600   0.782  22.924  1.00 25.00           C
ATOM    107  CA  SER   107      40.609  -2.878  23.542  1.00 25.00           C
ATOM    108  CA  ALA   108      39.020  -4.504  26.646  1.00 25.00           C
ATOM    109  CA  GLU   109      37.861  -1.661  28.889  1.00 25.00           C
ATOM    110  CA  VAL   110      40.354   1.077  28.036  1.00 25.00           C
ATOM    111  CA  PHE   111      43.254  -1.328  28.262  1.00 25.00           C
ATOM    112  CA  ALA   112      46.396   0.287  26.874  1.00 25.00           C
ATOM    113  CA  CYS   113      50.053   0.616  25.888  1.00 25.00           C
ATOM    114  CA  GLU   114      50.831   3.066  23.102  1.00 25.00           C
ATOM    115  CA  VAL   115      53.963   2.632  21.005  1.00 25.00           C
ATOM    116  CA  PHE   116      56.703   5.331  21.141  1.00 25.00           C
ATOM    117  CA  VAL   117      56.887   7.911  18.354  1.00 25.00           C
ATOM    118  CA  LEU   118      55.717   6.656  14.947  1.00 25.00           C
ATOM    119  CA  PRO   119      57.811   8.714  12.559  1.00 25.00           C
ATOM    120  CA  LEU   120      57.550   7.238   9.034  1.00 25.00           C
ATOM    121  CA  SER   121      59.941   7.707   6.113  1.00 25.00           C
ATOM    122  CA  GLY   122      61.091   4.136   6.676  1.00 25.00           C
ATOM    123  CA  GLU   123      58.773   2.086   8.778  1.00 25.00           C
ATOM    124  CA  ALA   124      57.177   1.287  12.121  1.00 25.00           C
ATOM    125  CA  PRO   125      58.152   2.060  15.677  1.00 25.00           C
ATOM    126  CA  GLU   126      57.923  -0.508  18.556  1.00 25.00           C
ATOM    127  CA  ARG   127      56.413  -2.022  21.665  1.00 25.00           C
ATOM    128  CA  ALA   128      53.159  -3.858  21.952  1.00 25.00           C
ATOM    129  CA  PHE   129      52.611  -5.092  25.556  1.00 25.00           C
ATOM    130  CA  ASP   130      51.817  -6.594  28.975  1.00 25.00           C
ATOM    131  CA  GLU   131      49.653  -8.033  31.809  1.00 25.00           C
ATOM    132  CA  GLN   132      51.003 -11.251  33.209  1.00 25.00           C
ATOM    133  CA  THR   133      54.490 -10.111  32.398  1.00 25.00           C
ATOM    134  CA  GLY   134      56.663  -7.228  31.076  1.00 25.00           C
ATOM    135  CA  LEU   135      59.542  -8.182  33.387  1.00 25.00           C
ATOM    136  CA  PHE   136      61.363  -9.056  36.610  1.00 25.00           C
ATOM    137  CA  LEU   137      65.109  -8.935  36.055  1.00 25.00           C
ATOM    138  CA  TRP   138      68.594 -10.229  36.886  1.00 25.00           C
ATOM    139  CA  LEU   139      71.687 -10.826  34.831  1.00 25.00           C
ATOM    140  CA  GLU   140      75.012 -10.587  33.120  1.00 25.00           C
TER
END
