
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0312TS393_3-D1
# Molecule2: number of CA atoms  132 ( 1043),  selected  132 , name T0312_D1.pdb
# PARAMETERS: T0312TS393_3-D1.T0312_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        37 - 76          4.83    18.09
  LONGEST_CONTINUOUS_SEGMENT:    40        38 - 77          4.51    18.25
  LCS_AVERAGE:     21.46

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        20 - 33          2.00    18.87
  LCS_AVERAGE:      7.90

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    12        21 - 32          0.26    20.10
  LCS_AVERAGE:      3.83

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     G       9     G       9      4    7   27     3    3   13   13   14   15   16   17   20   22   24   26   27   28   28   31   37   41   49   52 
LCS_GDT     K      10     K      10      5   11   27     3    5    5    6   10   12   14   16   20   22   24   26   27   28   28   31   36   40   48   50 
LCS_GDT     G      11     G      11      5   11   27     3    5    5   10   14   15   16   17   20   22   24   26   27   28   28   32   37   45   49   52 
LCS_GDT     F      12     F      12      5   11   27     3    5    5    6   10   12   14   17   20   22   24   26   27   28   28   29   36   41   49   52 
LCS_GDT     L      13     L      13      5   11   27     3    5    5    6   10   12   14   17   20   22   24   26   27   28   31   35   39   42   49   52 
LCS_GDT     L      14     L      14      5   11   27     4    5    5    6    8   12   14   16   20   22   24   26   27   28   31   36   39   42   47   50 
LCS_GDT     R      15     R      15      5   11   27     0    3    5    7   10   12   14   17   20   22   24   26   27   28   32   36   39   42   44   50 
LCS_GDT     L      16     L      16      4   11   27     0    3    5    7   10   12   14   17   20   22   24   26   27   29   31   35   39   43   47   51 
LCS_GDT     D      17     D      17      4   11   27     3    3    5    6   10   12   14   16   19   22   24   26   27   29   31   35   39   43   47   51 
LCS_GDT     Y      18     Y      18      4   11   27     3    4    5    6   10   12   14   17   20   22   24   26   27   29   31   35   42   44   50   51 
LCS_GDT     G      19     G      19      4   11   27     3    4    5    6   10   12   14   17   20   22   24   26   27   32   37   39   42   44   50   51 
LCS_GDT     K      20     K      20      4   14   27     3    4    5    7   10   12   14   17   20   23   27   29   29   34   37   40   43   47   50   52 
LCS_GDT     D      21     D      21     12   14   27    11   12   13   13   14   15   16   17   18   20   23   29   31   34   39   43   45   47   50   52 
LCS_GDT     L      22     L      22     12   14   27    11   12   13   13   14   15   16   17   18   23   27   29   32   34   39   43   45   47   50   52 
LCS_GDT     V      23     V      23     12   14   27    11   12   13   13   14   15   16   17   18   23   27   29   32   36   39   43   45   47   50   52 
LCS_GDT     R      24     R      24     12   14   27    11   12   13   13   14   15   16   17   20   24   28   30   33   36   39   43   45   47   50   52 
LCS_GDT     Q      25     Q      25     12   14   27    11   12   13   13   14   15   17   20   25   28   29   31   34   36   39   43   45   47   50   53 
LCS_GDT     I      26     I      26     12   14   27    11   12   13   13   14   15   17   20   25   28   29   31   34   36   39   43   45   47   51   54 
LCS_GDT     E      27     E      27     12   14   27    11   12   13   13   14   15   18   21   25   28   29   31   34   36   39   43   45   47   51   53 
LCS_GDT     E      28     E      28     12   14   27    11   12   13   13   14   15   18   21   25   28   29   31   34   36   39   43   45   47   51   53 
LCS_GDT     F      29     F      29     12   14   27    11   12   13   13   14   15   18   21   25   28   29   31   34   36   39   43   45   47   51   54 
LCS_GDT     L      30     L      30     12   14   27    11   12   13   13   14   15   18   21   25   28   29   31   34   36   39   43   45   47   51   54 
LCS_GDT     E      31     E      31     12   14   27    11   12   13   13   14   15   18   21   25   28   29   31   34   36   39   43   45   47   51   53 
LCS_GDT     E      32     E      32     12   14   27    11   12   13   13   14   15   17   21   25   28   29   31   34   36   39   43   45   47   51   53 
LCS_GDT     K      33     K      33      5   14   27     3    5    5   10   12   13   14   15   21   24   25   31   34   36   39   41   45   47   51   54 
LCS_GDT     G      34     G      34      5    8   27     3    5    5    6    7    9   12   17   20   22   23   25   27   28   32   35   40   45   50   54 
LCS_GDT     I      35     I      35      5    8   27     3    5    5    6    7    9   12   15   18   20   23   25   26   31   38   42   44   48   51   54 
LCS_GDT     H      36     H      36      5    8   24     3    5    5    6    7    9   12   13   15   17   19   21   23   26   28   30   32   35   39   48 
LCS_GDT     A      37     A      37      5    8   40     3    5    5    6    7    9   10   13   16   19   23   23   24   26   28   34   46   49   51   54 
LCS_GDT     A      38     A      38      4    8   40     3    3    5    5    7    8   10   13   16   24   33   38   44   45   46   47   48   50   51   54 
LCS_GDT     H      39     H      39      4    8   40     2    3    5    8   11   15   22   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     I      40     I      40      4    6   40     1    3    5    9   14   19   24   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     S      41     S      41      3    6   40     3    3    5   10   16   21   26   28   33   37   38   42   44   44   45   47   48   50   51   53 
LCS_GDT     A      42     A      42      4    9   40     3    4    7   10   16   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     I      43     I      43      4    9   40     3    4    7   10   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     G      44     G      44      4    9   40     3    5    7   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     A      45     A      45      4    9   40     3    4    7    9   13   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     V      46     V      46      4    9   40     3    4    7   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     R      47     R      47      5   11   40     3    5    8    8   11   14   22   28   32   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     S      48     S      48      5   12   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     A      49     A      49      5   12   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     V      50     V      50      5   12   40     3    5    8    9   13   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     I      51     I      51      5   12   40     2    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     G      52     G      52      5   12   40     1    4    8    8   13   17   25   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     Y      53     Y      53      5   12   40     3    4    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     Y      54     Y      54      5   12   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     D      55     D      55      5   12   40     3    5    8   12   17   20   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     Q      56     Q      56      3   12   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     E      57     E      57      3   12   40     3    5    7   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     K      58     K      58      3   12   40     3    3    3   11   17   19   25   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     K      59     K      59      3   12   40     3    5    8   12   16   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     E      60     E      60      4   11   40     3    5    8   12   15   19   23   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     Y      61     Y      61      4   11   40     3    5    7   11   15   17   22   26   30   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     V      62     V      62      5   11   40     3    5    7   11   15   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     K      63     K      63      5   11   40     3    5    8   12   15   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     K      64     K      64      5   11   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     E      65     E      65      5   11   40     3    5    8   12   15   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     L      66     L      66      5   11   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     M      67     M      67      5   11   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     E      68     E      68      4   11   40     3    5    8   12   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     P      69     P      69      3   11   40     3    3    7   11   17   21   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     L      70     L      70      4   10   40     1    4    5    7    9   15   22   26   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     E      71     E      71      4   10   40     3    5    7   10   15   20   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     I      72     I      72      4   10   40     3    5    7   10   15   20   26   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     L      73     L      73      4    9   40     3    4    5   10   13   15   22   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     S      74     S      74      4    9   40     4    4    6   10   13   15   19   25   31   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     L      75     L      75      4    9   40     4    4    6   10   13   15   18   24   27   33   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     S      76     S      76      4    9   40     4    4    5    7   10   12   14   15   18   25   29   31   37   42   46   47   48   49   51   54 
LCS_GDT     G      77     G      77      4    9   40     4    4    5    7   10   12   14   15   16   21   25   27   32   38   40   44   47   49   51   54 
LCS_GDT     N      78     N      78      4    9   24     3    3    5    7    9   12   14   15   16   20   23   25   31   38   41   44   47   48   49   51 
LCS_GDT     V      79     V      79      4    9   24     3    3    5    7   10   12   14   15   16   17   23   25   27   31   35   39   44   48   49   50 
LCS_GDT     S      80     S      80      4    9   24     3    4    5    7   10   12   14   15   16   20   23   25   31   38   40   44   47   48   49   50 
LCS_GDT     M      81     M      81      4    9   24     3    4    5    7   10   12   14   15   16   17   23   25   31   38   40   44   47   48   49   50 
LCS_GDT     K      82     K      82      4    9   24     3    4    5    7    9   12   14   15   16   19   21   26   32   38   41   44   47   48   49   51 
LCS_GDT     D      83     D      83      4    9   25     3    5    5    7    9   10   14   15   16   19   23   27   32   38   41   44   47   48   49   51 
LCS_GDT     S      84     S      84      4    8   25     4    4    4    7    8   11   14   15   16   20   23   26   32   38   41   44   47   48   49   51 
LCS_GDT     K      85     K      85      3    8   25     4    4    4    7    8   11   14   15   16   19   23   25   32   38   41   44   47   48   49   51 
LCS_GDT     P      86     P      86      4    8   25     4    4    4    7    8   11   14   15   16   19   23   25   31   38   41   44   47   48   49   51 
LCS_GDT     F      87     F      87      4    7   25     3    4    4    7    8   11   14   15   16   20   27   31   33   38   41   44   47   48   49   51 
LCS_GDT     C      88     C      88      4    9   25     3    4    5    7    9   12   18   24   25   27   29   31   34   38   41   44   47   48   49   51 
LCS_GDT     H      89     H      89      4   10   25     3    4    5    9   13   15   18   24   25   27   29   31   34   37   41   44   47   48   49   51 
LCS_GDT     I      90     I      90      4   10   25     3    4    5    9   13   15   18   24   25   27   29   31   34   38   41   44   47   48   50   54 
LCS_GDT     H      91     H      91      4   13   25     3    4    6    9   13   15   18   24   25   27   29   36   44   45   46   47   48   50   51   54 
LCS_GDT     V      92     V      92      4   13   25     3    4    6    9   13   15   22   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     L      93     L      93      4   13   25     3    3    6    9   13   15   18   24   25   28   34   36   37   39   44   45   47   50   51   53 
LCS_GDT     L      94     L      94      4   13   25     1    4    5    7   10   15   18   24   25   28   29   31   34   38   41   44   47   48   50   52 
LCS_GDT     G      95     G      95      4   13   25     1    3    4    9   13   15   18   24   25   27   29   31   34   38   41   44   47   48   50   52 
LCS_GDT     K      96     K      96      4   13   25     3    3    6    9   13   15   18   24   25   27   29   31   34   38   41   44   47   48   50   52 
LCS_GDT     D      97     D      97      4   13   25     3    4    6    9   13   15   18   24   25   27   29   31   34   38   41   44   47   48   50   52 
LCS_GDT     G      98     G      98      4   13   25     3    4    6    9   13   15   18   24   25   27   29   31   34   38   41   44   47   48   50   51 
LCS_GDT     E      99     E      99      4   13   25     2    4    4    8   13   15   18   24   25   27   29   31   34   38   41   44   47   48   50   52 
LCS_GDT     V     100     V     100      4   13   25     0    4    5    8   12   15   18   24   25   27   29   31   34   38   41   44   47   48   50   52 
LCS_GDT     Y     101     Y     101      4   13   25     2    4    8    9   13   15   18   24   25   27   29   31   34   38   41   44   47   48   50   51 
LCS_GDT     G     102     G     102      4   13   25     3    4    6    9   13   15   18   24   25   28   32   36   37   39   41   44   47   49   51   53 
LCS_GDT     G     103     G     103      4   13   25     3    4    6    9   13   15   19   28   34   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     H     104     H     104      3   11   25     3    3    3    8   12   15   22   24   30   33   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     L     105     L     105      3   11   25     3    3    5    8   12   14   18   24   25   27   29   31   34   38   41   44   47   48   51   54 
LCS_GDT     F     106     F     106      4    7   25     3    5    5    6   10   14   18   24   25   27   29   31   34   38   41   44   47   48   49   53 
LCS_GDT     S     107     S     107      4    7   25     3    5    5    7    7    9   14   17   19   25   29   31   34   38   41   44   47   48   49   51 
LCS_GDT     A     108     A     108      4    8   24     3    5    6    7   10   11   14   15   18   22   23   27   34   38   41   44   47   48   49   51 
LCS_GDT     E     109     E     109      5    8   24     3    5    6    7   10   11   14   15   17   19   23   27   31   36   41   44   47   48   49   50 
LCS_GDT     V     110     V     110      5    8   24     3    4    6    7   10   11   14   15   17   18   20   24   30   33   38   42   45   45   48   50 
LCS_GDT     F     111     F     111      5    8   19     3    4    6    7    8   10   14   15   17   18   20   21   23   26   28   29   32   35   41   44 
LCS_GDT     A     112     A     112      5    8   19     3    4    5    7    8    9   12   13   16   17   18   21   23   25   26   28   32   35   41   44 
LCS_GDT     C     113     C     113      5    8   19     3    4    6    7    9   11   14   15   20   22   24   26   27   29   31   34   37   42   44   48 
LCS_GDT     E     114     E     114      5    8   19     1    4    5    7    8   10   13   15   17   18   23   26   27   31   35   37   39   42   44   47 
LCS_GDT     V     115     V     115      5    8   19     3    4    5    7    9   11   14   15   17   18   20   21   27   31   35   37   39   42   43   47 
LCS_GDT     F     116     F     116      5    7   19     3    4    5    7   10   11   14   15   17   18   20   21   24   31   35   37   37   40   41   44 
LCS_GDT     V     117     V     117      5    7   19     3    4    5    7   10   11   14   15   17   18   20   21   23   25   28   31   33   37   38   44 
LCS_GDT     L     118     L     118      5    7   19     3    4    5    7    9   11   14   15   17   18   20   21   23   23   25   29   32   37   40   40 
LCS_GDT     P     119     P     119      5    7   19     3    4    5    7   10   11   14   15   17   18   20   21   23   23   25   29   32   35   40   45 
LCS_GDT     L     120     L     120      4   12   19     3    4    6    8   10   11   14   15   17   18   20   21   23   23   25   29   32   37   40   40 
LCS_GDT     S     121     S     121      4   12   19     3    4    6    8   10   11   13   15   17   18   20   21   23   23   25   29   32   35   40   40 
LCS_GDT     G     122     G     122      3   12   19     3    4    6    8   10   11   13   15   16   18   18   19   21   23   24   29   32   37   40   40 
LCS_GDT     E     123     E     123      5   12   19     3    4    6    7   10   11   13   15   16   18   18   19   21   22   24   29   32   35   40   40 
LCS_GDT     A     124     A     124      5   12   19     3    4    6    8   10   11   13   15   16   18   18   19   21   22   24   29   32   37   40   40 
LCS_GDT     P     125     P     125      5   12   19     3    4    6    8   10   11   13   15   16   18   18   19   21   22   24   29   32   37   40   40 
LCS_GDT     E     126     E     126      5   12   19     4    5    6    7    9   11   13   15   16   18   18   19   21   22   24   29   32   37   40   45 
LCS_GDT     R     127     R     127      5   12   19     4    5    6    7    9   11   13   15   16   18   18   19   21   33   43   47   48   49   50   51 
LCS_GDT     A     128     A     128      5   12   19     4    5    6    8   10   11   13   15   16   18   18   20   22   25   26   29   32   37   40   50 
LCS_GDT     F     129     F     129      5   12   19     4    5    6    8   10   11   13   15   16   18   18   21   31   37   43   47   48   50   51   54 
LCS_GDT     D     130     D     130      5   12   19     3    5    6    7   10   11   13   15   30   33   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     E     131     E     131      4   12   19     3    4    4    8   10   11   13   22   25   30   34   43   44   45   46   47   48   50   51   54 
LCS_GDT     Q     132     Q     132      5    9   19     3    5    7    7   12   15   18   28   33   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     T     133     T     133      5    6   19     3    5    5    6   12   15   21   28   33   37   40   43   44   45   46   47   48   50   51   54 
LCS_GDT     G     134     G     134      5    7   19     3    5    5    6    8   10   13   19   23   26   28   34   38   41   46   47   48   50   51   54 
LCS_GDT     L     135     L     135      5    7   19     3    5    5    7   14   15   16   17   18   18   19   20   33   36   39   41   47   50   51   54 
LCS_GDT     F     136     F     136      5    7   11     3    5    5    7    7    7    7    9   10   12   18   18   22   24   34   35   36   46   51   53 
LCS_GDT     L     137     L     137      5    7   11     3    5    5    7    7    7    7    9   10   12   14   16   20   22   23   29   36   39   45   46 
LCS_GDT     W     138     W     138      5    7   11     3    5    5    7    7    7    7    9   10   12   14   17   20   29   34   35   36   41   46   53 
LCS_GDT     L     139     L     139      5    7   11     3    5    5    7    7    7    7    9   10   12   14   17   21   29   34   35   39   46   51   53 
LCS_GDT     E     140     E     140      5    7   11     3    5    5    7    7    7    7    9   10   12   14   17   20   29   34   35   36   41   46   53 
LCS_AVERAGE  LCS_A:  11.07  (   3.83    7.90   21.46 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     13     13     17     21     26     28     34     37     40     43     44     45     46     47     48     50     51     54 
GDT PERCENT_CA   8.33   9.09   9.85   9.85  12.88  15.91  19.70  21.21  25.76  28.03  30.30  32.58  33.33  34.09  34.85  35.61  36.36  37.88  38.64  40.91
GDT RMS_LOCAL    0.18   0.26   0.61   0.61   1.85   2.18   2.49   2.61   3.18   3.34   3.63   3.89   3.94   4.22   4.42   4.49   4.64   5.00   5.12   6.05
GDT RMS_ALL_CA  20.22  20.10  19.87  19.87  19.84  20.25  20.24  20.31  19.30  19.38  18.92  18.80  18.95  18.55  18.43  18.58  18.60  18.47  18.54  17.61

#      Molecule1      Molecule2       DISTANCE
LGA    G       9      G       9         36.183
LGA    K      10      K      10         31.809
LGA    G      11      G      11         24.884
LGA    F      12      F      12         20.810
LGA    L      13      L      13         18.881
LGA    L      14      L      14         16.676
LGA    R      15      R      15         19.044
LGA    L      16      L      16         20.478
LGA    D      17      D      17         25.573
LGA    Y      18      Y      18         28.829
LGA    G      19      G      19         33.804
LGA    K      20      K      20         32.076
LGA    D      21      D      21         29.713
LGA    L      22      L      22         22.668
LGA    V      23      V      23         23.683
LGA    R      24      R      24         30.218
LGA    Q      25      Q      25         27.595
LGA    I      26      I      26         23.819
LGA    E      27      E      27         29.655
LGA    E      28      E      28         33.832
LGA    F      29      F      29         30.045
LGA    L      30      L      30         31.448
LGA    E      31      E      31         38.253
LGA    E      32      E      32         39.062
LGA    K      33      K      33         35.470
LGA    G      34      G      34         33.951
LGA    I      35      I      35         28.133
LGA    H      36      H      36         26.683
LGA    A      37      A      37         22.085
LGA    A      38      A      38         15.691
LGA    H      39      H      39          8.689
LGA    I      40      I      40          5.031
LGA    S      41      S      41          1.933
LGA    A      42      A      42          2.318
LGA    I      43      I      43          2.470
LGA    G      44      G      44          1.589
LGA    A      45      A      45          3.213
LGA    V      46      V      46          2.984
LGA    R      47      R      47          5.403
LGA    S      48      S      48          3.025
LGA    A      49      A      49          1.759
LGA    V      50      V      50          3.456
LGA    I      51      I      51          2.315
LGA    G      52      G      52          4.050
LGA    Y      53      Y      53          1.533
LGA    Y      54      Y      54          1.777
LGA    D      55      D      55          2.562
LGA    Q      56      Q      56          2.310
LGA    E      57      E      57          1.578
LGA    K      58      K      58          3.563
LGA    K      59      K      59          2.747
LGA    E      60      E      60          4.639
LGA    Y      61      Y      61          5.524
LGA    V      62      V      62          3.158
LGA    K      63      K      63          3.422
LGA    K      64      K      64          0.910
LGA    E      65      E      65          2.813
LGA    L      66      L      66          1.919
LGA    M      67      M      67          1.440
LGA    E      68      E      68          2.424
LGA    P      69      P      69          1.477
LGA    L      70      L      70          5.308
LGA    E      71      E      71          3.743
LGA    I      72      I      72          3.284
LGA    L      73      L      73          5.736
LGA    S      74      S      74          8.782
LGA    L      75      L      75          9.426
LGA    S      76      S      76         12.874
LGA    G      77      G      77         14.180
LGA    N      78      N      78         20.238
LGA    V      79      V      79         22.782
LGA    S      80      S      80         27.130
LGA    M      81      M      81         30.323
LGA    K      82      K      82         31.515
LGA    D      83      D      83         36.895
LGA    S      84      S      84         38.671
LGA    K      85      K      85         35.139
LGA    P      86      P      86         30.373
LGA    F      87      F      87         25.570
LGA    C      88      C      88         23.333
LGA    H      89      H      89         20.360
LGA    I      90      I      90         15.445
LGA    H      91      H      91          9.368
LGA    V      92      V      92          4.730
LGA    L      93      L      93          7.595
LGA    L      94      L      94         10.521
LGA    G      95      G      95         14.572
LGA    K      96      K      96         20.107
LGA    D      97      D      97         24.197
LGA    G      98      G      98         26.827
LGA    E      99      E      99         23.622
LGA    V     100      V     100         17.550
LGA    Y     101      Y     101         12.620
LGA    G     102      G     102          7.267
LGA    G     103      G     103          3.811
LGA    H     104      H     104          7.591
LGA    L     105      L     105         12.881
LGA    F     106      F     106         17.383
LGA    S     107      S     107         21.032
LGA    A     108      A     108         23.190
LGA    E     109      E     109         28.666
LGA    V     110      V     110         26.447
LGA    F     111      F     111         28.371
LGA    A     112      A     112         24.439
LGA    C     113      C     113         19.365
LGA    E     114      E     114         18.122
LGA    V     115      V     115         13.982
LGA    F     116      F     116         15.598
LGA    V     117      V     117         14.077
LGA    L     118      L     118         17.456
LGA    P     119      P     119         18.133
LGA    L     120      L     120         24.315
LGA    S     121      S     121         27.779
LGA    G     122      G     122         29.673
LGA    E     123      E     123         25.941
LGA    A     124      A     124         22.789
LGA    P     125      P     125         17.685
LGA    E     126      E     126         14.431
LGA    R     127      R     127         10.409
LGA    A     128      A     128         14.808
LGA    F     129      F     129         14.555
LGA    D     130      D     130          9.605
LGA    E     131      E     131          9.706
LGA    Q     132      Q     132          6.241
LGA    T     133      T     133          7.750
LGA    G     134      G     134         14.662
LGA    L     135      L     135         16.287
LGA    F     136      F     136         21.629
LGA    L     137      L     137         23.081
LGA    W     138      W     138         27.764
LGA    L     139      L     139         29.919
LGA    E     140      E     140         35.196

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0     28    2.61    18.939    17.283     1.035

LGA_LOCAL      RMSD =  2.606  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.314  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 15.149  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.013814 * X  +   0.379960 * Y  +  -0.924900 * Z  +  47.723152
  Y_new =  -0.522078 * X  +  -0.786151 * Y  +  -0.330757 * Z  +   1.620954
  Z_new =  -0.852786 * X  +   0.487439 * Y  +   0.187509 * Z  +  21.454475 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.203564   -1.938028  [ DEG:    68.9592   -111.0408 ]
  Theta =   1.021297    2.120296  [ DEG:    58.5160    121.4840 ]
  Phi   =  -1.544344    1.597249  [ DEG:   -88.4844     91.5156 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS393_3-D1                               
REMARK     2: T0312_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS393_3-D1.T0312_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0   28   2.61  17.283    15.15
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS393_3-D1
PFRMAT TS
TARGET T0312
MODEL 3
PARENT N/A
ATOM      9  CA  GLY     9      34.314  10.649  16.171  1.00 25.00           C
ATOM     10  CA  LYS    10      37.577  11.291  14.398  1.00 25.00           C
ATOM     11  CA  GLY    11      40.242  11.370  17.124  1.00 25.00           C
ATOM     12  CA  PHE    12      43.652   9.771  17.607  1.00 25.00           C
ATOM     13  CA  LEU    13      44.436   8.058  20.937  1.00 25.00           C
ATOM     14  CA  LEU    14      47.849   7.611  19.471  1.00 25.00           C
ATOM     15  CA  ARG    15      49.005   6.398  22.831  1.00 25.00           C
ATOM     16  CA  LEU    16      50.943   6.104  26.070  1.00 25.00           C
ATOM     17  CA  ASP    17      52.635   7.335  29.245  1.00 25.00           C
ATOM     18  CA  TYR    18      55.060   8.712  31.848  1.00 25.00           C
ATOM     19  CA  GLY    19      55.298   7.872  35.533  1.00 25.00           C
ATOM     20  CA  LYS    20      54.796  11.613  36.006  1.00 25.00           C
ATOM     21  CA  ASP    21      53.797  15.241  35.292  1.00 25.00           C
ATOM     22  CA  LEU    22      52.372  14.206  31.891  1.00 25.00           C
ATOM     23  CA  VAL    23      50.381  11.388  33.555  1.00 25.00           C
ATOM     24  CA  ARG    24      49.013  13.853  36.147  1.00 25.00           C
ATOM     25  CA  GLN    25      47.995  16.265  33.352  1.00 25.00           C
ATOM     26  CA  ILE    26      46.233  13.413  31.500  1.00 25.00           C
ATOM     27  CA  GLU    27      44.379  12.443  34.708  1.00 25.00           C
ATOM     28  CA  GLU    28      43.301  16.083  35.215  1.00 25.00           C
ATOM     29  CA  PHE    29      42.045  16.241  31.601  1.00 25.00           C
ATOM     30  CA  LEU    30      40.075  12.997  32.119  1.00 25.00           C
ATOM     31  CA  GLU    31      38.531  14.417  35.323  1.00 25.00           C
ATOM     32  CA  GLU    32      37.553  17.618  33.462  1.00 25.00           C
ATOM     33  CA  LYS    33      38.455  20.457  31.154  1.00 25.00           C
ATOM     34  CA  GLY    34      41.394  21.816  29.190  1.00 25.00           C
ATOM     35  CA  ILE    35      42.893  19.181  26.942  1.00 25.00           C
ATOM     36  CA  HIS    36      44.860  18.013  23.859  1.00 25.00           C
ATOM     37  CA  ALA    37      45.612  14.230  23.956  1.00 25.00           C
ATOM     38  CA  ALA    38      47.951  11.205  24.348  1.00 25.00           C
ATOM     39  CA  HIS    39      51.246  11.155  26.306  1.00 25.00           C
ATOM     40  CA  ILE    40      52.808  11.074  22.861  1.00 25.00           C
ATOM     41  CA  SER    41      54.805  11.748  19.687  1.00 25.00           C
ATOM     42  CA  ALA    42      51.390  11.466  17.981  1.00 25.00           C
ATOM     43  CA  ILE    43      47.906  12.251  16.684  1.00 25.00           C
ATOM     44  CA  GLY    44      48.835  15.355  14.620  1.00 25.00           C
ATOM     45  CA  ALA    45      48.646  15.800  10.833  1.00 25.00           C
ATOM     46  CA  VAL    46      50.013  12.468   9.618  1.00 25.00           C
ATOM     47  CA  ARG    47      52.011   9.913   7.722  1.00 25.00           C
ATOM     48  CA  SER    48      49.265   7.341   7.551  1.00 25.00           C
ATOM     49  CA  ALA    49      49.498   3.915   9.192  1.00 25.00           C
ATOM     50  CA  VAL    50      49.188   0.798  11.353  1.00 25.00           C
ATOM     51  CA  ILE    51      49.845  -1.206  14.462  1.00 25.00           C
ATOM     52  CA  GLY    52      50.782  -2.935  17.766  1.00 25.00           C
ATOM     53  CA  TYR    53      51.209  -6.563  16.615  1.00 25.00           C
ATOM     54  CA  TYR    54      50.658  -8.483  19.903  1.00 25.00           C
ATOM     55  CA  ASP    55      53.080 -11.369  20.138  1.00 25.00           C
ATOM     56  CA  GLN    56      54.100 -14.369  22.342  1.00 25.00           C
ATOM     57  CA  GLU    57      53.276 -18.115  22.271  1.00 25.00           C
ATOM     58  CA  LYS    58      56.578 -18.369  20.518  1.00 25.00           C
ATOM     59  CA  LYS    59      55.177 -16.213  17.656  1.00 25.00           C
ATOM     60  CA  GLU    60      52.056 -15.372  15.654  1.00 25.00           C
ATOM     61  CA  TYR    61      49.705 -12.699  14.312  1.00 25.00           C
ATOM     62  CA  VAL    62      48.468 -10.687  11.403  1.00 25.00           C
ATOM     63  CA  LYS    63      47.550  -7.374   9.819  1.00 25.00           C
ATOM     64  CA  LYS    64      47.579  -3.567   9.388  1.00 25.00           C
ATOM     65  CA  GLU    65      45.124  -2.396   6.704  1.00 25.00           C
ATOM     66  CA  LEU    66      47.606   0.425   5.815  1.00 25.00           C
ATOM     67  CA  MET    67      46.148   1.402   2.431  1.00 25.00           C
ATOM     68  CA  GLU    68      45.310   5.113   2.491  1.00 25.00           C
ATOM     69  CA  PRO    69      43.389   7.897   4.187  1.00 25.00           C
ATOM     70  CA  LEU    70      43.314  11.691   4.607  1.00 25.00           C
ATOM     71  CA  GLU    71      43.379  12.200   8.361  1.00 25.00           C
ATOM     72  CA  ILE    72      45.125  11.691  11.721  1.00 25.00           C
ATOM     73  CA  LEU    73      43.024   8.481  12.055  1.00 25.00           C
ATOM     74  CA  SER    74      40.427   7.035  14.484  1.00 25.00           C
ATOM     75  CA  LEU    75      42.645   4.823  16.660  1.00 25.00           C
ATOM     76  CA  SER    76      43.819   1.183  16.289  1.00 25.00           C
ATOM     77  CA  GLY    77      45.817  -1.731  17.697  1.00 25.00           C
ATOM     78  CA  ASN    78      45.234  -4.609  15.267  1.00 25.00           C
ATOM     79  CA  VAL    79      45.940  -7.232  17.888  1.00 25.00           C
ATOM     80  CA  SER    80      44.416 -10.361  16.457  1.00 25.00           C
ATOM     81  CA  MET    81      44.617 -13.386  14.182  1.00 25.00           C
ATOM     82  CA  LYS    82      42.159 -16.208  14.646  1.00 25.00           C
ATOM     83  CA  ASP    83      38.436 -16.973  15.224  1.00 25.00           C
ATOM     84  CA  SER    84      38.351 -13.683  17.198  1.00 25.00           C
ATOM     85  CA  LYS    85      39.389 -10.047  17.625  1.00 25.00           C
ATOM     86  CA  PRO    86      41.034  -7.057  19.366  1.00 25.00           C
ATOM     87  CA  PHE    87      40.965  -3.594  17.778  1.00 25.00           C
ATOM     88  CA  CYS    88      39.329  -0.955  15.629  1.00 25.00           C
ATOM     89  CA  HIS    89      39.901   2.012  13.237  1.00 25.00           C
ATOM     90  CA  ILE    90      42.644   3.314  10.956  1.00 25.00           C
ATOM     91  CA  HIS    91      45.834   4.250  12.812  1.00 25.00           C
ATOM     92  CA  VAL    92      47.435   7.360  14.431  1.00 25.00           C
ATOM     93  CA  LEU    93      50.698   9.118  13.548  1.00 25.00           C
ATOM     94  CA  LEU    94      54.409   9.745  13.975  1.00 25.00           C
ATOM     95  CA  GLY    95      53.872  13.496  14.053  1.00 25.00           C
ATOM     96  CA  LYS    96      56.874  15.581  15.058  1.00 25.00           C
ATOM     97  CA  ASP    97      58.548  14.103  12.005  1.00 25.00           C
ATOM     98  CA  GLY    98      60.218  10.961  13.376  1.00 25.00           C
ATOM     99  CA  GLU    99      59.412   8.547  16.164  1.00 25.00           C
ATOM    100  CA  VAL   100      56.344   7.243  18.097  1.00 25.00           C
ATOM    101  CA  TYR   101      52.806   6.876  19.405  1.00 25.00           C
ATOM    102  CA  GLY   102      52.056   3.973  17.003  1.00 25.00           C
ATOM    103  CA  GLY   103      48.389   2.913  17.463  1.00 25.00           C
ATOM    104  CA  HIS   104      46.636   2.279  20.741  1.00 25.00           C
ATOM    105  CA  LEU   105      43.035   2.928  21.877  1.00 25.00           C
ATOM    106  CA  PHE   106      41.585  -0.550  21.729  1.00 25.00           C
ATOM    107  CA  SER   107      42.598  -1.591  25.226  1.00 25.00           C
ATOM    108  CA  ALA   108      40.956   1.072  27.419  1.00 25.00           C
ATOM    109  CA  GLU   109      42.555   0.482  30.855  1.00 25.00           C
ATOM    110  CA  VAL   110      45.959  -0.323  29.297  1.00 25.00           C
ATOM    111  CA  PHE   111      46.730  -3.617  27.549  1.00 25.00           C
ATOM    112  CA  ALA   112      48.117  -1.451  24.724  1.00 25.00           C
ATOM    113  CA  CYS   113      50.794   1.328  24.585  1.00 25.00           C
ATOM    114  CA  GLU   114      51.811   0.836  20.937  1.00 25.00           C
ATOM    115  CA  VAL   115      55.037   2.720  21.743  1.00 25.00           C
ATOM    116  CA  PHE   116      56.285   1.253  18.462  1.00 25.00           C
ATOM    117  CA  VAL   117      56.898   3.174  15.238  1.00 25.00           C
ATOM    118  CA  LEU   118      55.396   5.113  12.370  1.00 25.00           C
ATOM    119  CA  PRO   119      58.299   6.380  10.345  1.00 25.00           C
ATOM    120  CA  LEU   120      56.310   6.056   7.063  1.00 25.00           C
ATOM    121  CA  SER   121      59.320   5.551   4.864  1.00 25.00           C
ATOM    122  CA  GLY   122      59.972   1.809   4.961  1.00 25.00           C
ATOM    123  CA  GLU   123      59.187   0.936   8.594  1.00 25.00           C
ATOM    124  CA  ALA   124      56.751  -1.396  10.204  1.00 25.00           C
ATOM    125  CA  PRO   125      58.125  -1.522  13.723  1.00 25.00           C
ATOM    126  CA  GLU   126      58.198  -3.657  16.842  1.00 25.00           C
ATOM    127  CA  ARG   127      57.367  -3.355  20.574  1.00 25.00           C
ATOM    128  CA  ALA   128      53.952  -4.640  21.605  1.00 25.00           C
ATOM    129  CA  PHE   129      52.764  -5.860  25.007  1.00 25.00           C
ATOM    130  CA  ASP   130      55.723  -7.275  26.823  1.00 25.00           C
ATOM    131  CA  GLU   131      58.791  -7.120  28.983  1.00 25.00           C
ATOM    132  CA  GLN   132      58.545  -9.867  31.601  1.00 25.00           C
ATOM    133  CA  THR   133      54.754  -9.599  31.591  1.00 25.00           C
ATOM    134  CA  GLY   134      51.605  -7.705  32.616  1.00 25.00           C
ATOM    135  CA  LEU   135      51.401 -10.279  35.332  1.00 25.00           C
ATOM    136  CA  PHE   136      50.955 -11.232  38.978  1.00 25.00           C
ATOM    137  CA  LEU   137      48.714 -13.189  41.407  1.00 25.00           C
ATOM    138  CA  TRP   138      45.076 -14.106  42.257  1.00 25.00           C
ATOM    139  CA  LEU   139      45.450 -13.000  45.877  1.00 25.00           C
ATOM    140  CA  GLU   140      42.759 -12.937  48.558  1.00 25.00           C
TER
END
