
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0312TS393_5-D1
# Molecule2: number of CA atoms  132 ( 1043),  selected  132 , name T0312_D1.pdb
# PARAMETERS: T0312TS393_5-D1.T0312_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        70 - 107         4.91    17.54
  LCS_AVERAGE:     23.91

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        21 - 39          1.90    24.43
  LCS_AVERAGE:      8.57

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        21 - 35          0.87    24.64
  LCS_AVERAGE:      4.53

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     G       9     G       9      3    4   35     3    4   11   13   17   18   19   19   22   23   25   29   31   32   37   39   43   46   52   55 
LCS_GDT     K      10     K      10      3   10   35     3    3    6    8    9   12   15   19   22   23   25   29   31   32   37   39   43   47   52   55 
LCS_GDT     G      11     G      11      5   10   35     3    4    6    8    9   12   15   18   22   23   25   29   31   32   37   39   41   46   52   55 
LCS_GDT     F      12     F      12      5   10   35     3    4    6    8    9   12   15   18   22   23   25   29   31   32   33   35   42   43   52   55 
LCS_GDT     L      13     L      13      5   10   35     3    4    5    5    9   12   15   18   22   23   25   29   31   32   33   35   37   40   48   51 
LCS_GDT     L      14     L      14      5   10   35     3    4    6    8    9   11   13   18   22   23   25   29   31   32   33   35   37   38   43   50 
LCS_GDT     R      15     R      15      5   10   35     3    4    6    8    9   11   15   18   22   23   25   29   31   32   33   37   42   45   49   53 
LCS_GDT     L      16     L      16      3   10   35     3    3    6    8    9   12   15   18   22   24   30   36   38   41   45   47   49   51   54   58 
LCS_GDT     D      17     D      17      4   10   35     3    3    4    8    9   11   13   17   22   29   33   39   40   43   45   48   49   51   53   55 
LCS_GDT     Y      18     Y      18      4   10   35     3    3    5    8    9   11   13   17   22   23   27   34   39   43   45   48   49   51   52   54 
LCS_GDT     G      19     G      19      4   10   35     3    3    5    8    9   11   14   18   22   23   25   29   32   37   42   48   49   51   52   54 
LCS_GDT     K      20     K      20      4   18   35     3    3    5    9   11   14   17   19   23   28   28   34   39   43   45   48   49   51   52   54 
LCS_GDT     D      21     D      21     15   19   35    11   13   15   16   17   18   19   19   21   23   25   29   31   32   40   41   44   51   52   54 
LCS_GDT     L      22     L      22     15   19   35    11   13   15   16   17   18   19   19   21   23   24   26   27   32   33   41   44   51   53   58 
LCS_GDT     V      23     V      23     15   19   35    11   13   15   16   17   18   19   19   21   23   25   29   31   36   38   39   43   46   50   54 
LCS_GDT     R      24     R      24     15   19   35    11   13   15   16   17   18   19   19   22   23   25   29   31   36   38   39   41   46   50   53 
LCS_GDT     Q      25     Q      25     15   19   35    11   13   15   16   17   18   19   19   23   25   29   33   35   37   39   42   48   51   54   58 
LCS_GDT     I      26     I      26     15   19   35    11   13   15   16   17   18   19   20   23   25   27   32   35   37   39   41   43   50   54   58 
LCS_GDT     E      27     E      27     15   19   35    11   13   15   16   17   18   19   19   22   23   25   29   31   32   36   39   41   43   46   47 
LCS_GDT     E      28     E      28     15   19   35    11   13   15   16   17   18   19   19   22   24   26   29   31   34   38   40   42   45   46   51 
LCS_GDT     F      29     F      29     15   19   35    11   13   15   16   17   18   19   19   22   23   25   29   35   35   39   41   42   45   47   51 
LCS_GDT     L      30     L      30     15   19   35    11   13   15   16   17   18   19   19   22   23   25   29   31   32   33   35   39   43   48   52 
LCS_GDT     E      31     E      31     15   19   35    11   13   15   16   17   18   19   19   21   23   25   29   31   32   33   35   37   40   43   46 
LCS_GDT     E      32     E      32     15   19   35    11   13   15   16   17   18   19   19   21   23   25   29   31   32   33   35   39   42   46   48 
LCS_GDT     K      33     K      33     15   19   35     3    5   15   16   17   18   19   19   21   23   25   29   31   32   33   36   39   45   50   55 
LCS_GDT     G      34     G      34     15   19   35     5   10   15   16   17   18   19   19   22   23   25   29   31   32   33   36   39   45   50   55 
LCS_GDT     I      35     I      35     15   19   35     5   12   15   16   17   18   19   19   22   23   25   29   31   34   36   39   42   48   52   55 
LCS_GDT     H      36     H      36      5   19   35     5    6    6    9   17   17   17   19   21   23   25   28   31   33   36   39   42   48   52   55 
LCS_GDT     A      37     A      37      5   19   35     5    7   15   16   17   17   18   19   21   23   25   26   31   34   38   41   47   49   52   55 
LCS_GDT     A      38     A      38      5   19   35    10   13   15   16   17   18   19   19   21   23   25   29   31   34   38   41   47   49   52   55 
LCS_GDT     H      39     H      39      5   19   35     3    4    6    7   10   16   19   19   21   23   25   28   32   37   41   45   47   49   52   55 
LCS_GDT     I      40     I      40      5   10   35     3    6    9   12   16   18   19   19   21   23   25   30   35   37   41   45   47   49   52   58 
LCS_GDT     S      41     S      41      5   10   35     3    6    6    9   10   13   16   20   24   26   29   33   36   41   43   45   48   51   54   58 
LCS_GDT     A      42     A      42      5    8   35     3    4    6    9   14   17   21   23   29   30   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     I      43     I      43      5    6   35     3    4    7   11   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     G      44     G      44      5    6   35     3    4    6    8   10   13   15   22   28   32   34   39   40   43   45   48   49   51   53   55 
LCS_GDT     A      45     A      45      7   12   35     0    5   10   16   18   21   25   28   29   31   34   35   37   40   41   45   47   50   52   55 
LCS_GDT     V      46     V      46      7   12   35     5    6    9   16   18   21   24   27   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     R      47     R      47      7   12   35     5    6    9   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     S      48     S      48      7   12   35     5    6   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     A      49     A      49      7   12   35     4    7   11   14   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     V      50     V      50      7   12   35     5    8   11   14   17   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     I      51     I      51      7   12   35     5    6    9   14   17   21   25   28   29   31   34   35   37   40   41   45   48   51   54   58 
LCS_GDT     G      52     G      52      7   12   35     2    5    9   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   54   58 
LCS_GDT     Y      53     Y      53      5   12   35     3    5   10   16   18   21   25   28   29   31   34   35   37   40   42   45   48   51   54   58 
LCS_GDT     Y      54     Y      54      3   12   35     3    6    8   14   17   21   25   28   29   31   34   35   37   41   43   45   48   51   54   58 
LCS_GDT     D      55     D      55      3   12   35     3    4    8   13   18   21   25   28   29   31   34   35   37   40   41   45   47   51   54   58 
LCS_GDT     Q      56     Q      56      3   12   35     3    4   10   16   18   21   25   28   29   31   34   35   37   40   41   45   48   50   53   58 
LCS_GDT     E      57     E      57      3   12   35     3    3    7   11   16   19   24   28   29   31   34   35   37   40   42   45   48   51   54   58 
LCS_GDT     K      58     K      58      4   12   35     3    4    6   11   16   16   21   24   28   31   34   35   37   40   42   45   48   51   54   58 
LCS_GDT     K      59     K      59      4   12   35     3    4    7   13   18   21   25   28   29   31   34   35   37   40   41   45   47   51   54   58 
LCS_GDT     E      60     E      60      9   14   35     4    8   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   54   58 
LCS_GDT     Y      61     Y      61      9   14   35     4    8   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   58 
LCS_GDT     V      62     V      62      9   14   35     4    8   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     K      63     K      63      9   14   35     4    8   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     K      64     K      64      9   14   35     3    8   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     E      65     E      65      9   14   35     3    8   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     L      66     L      66      9   14   35     4    8   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     M      67     M      67      9   14   35     4    6   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     E      68     E      68      9   14   35     4    7   11   16   18   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     P      69     P      69      6   14   35     4    6    9   14   17   21   25   28   29   31   34   35   37   40   41   45   47   49   52   55 
LCS_GDT     L      70     L      70      6   14   38     4    4    4    8   13   20   24   28   29   31   34   35   37   40   45   48   49   50   52   55 
LCS_GDT     E      71     E      71      6   14   38     4    6    8   12   17   21   25   28   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     I      72     I      72      6   14   38     4    6    8   14   17   21   25   28   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     L      73     L      73      4   14   38     4    4    6   13   17   21   25   28   29   31   34   38   40   43   45   48   49   51   54   58 
LCS_GDT     S      74     S      74      3    7   38     3    4    6    8   10   13   19   25   27   31   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     L      75     L      75      4    8   38     3    7    7   11   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     S      76     S      76      4    8   38     3    4    5    7   13   17   21   23   26   30   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     G      77     G      77      4    8   38     4    7    7   11   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     N      78     N      78      4    8   38     4    7    7   11   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     V      79     V      79      3    8   38     3    3    5    6   11   17   21   23   29   32   34   39   40   43   45   48   49   51   54   56 
LCS_GDT     S      80     S      80      3    8   38     3    4    5   10   12   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     M      81     M      81      4    8   38     4    4    4    6   10   13   18   23   29   31   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     K      82     K      82      4    8   38     4    4    4    6   10   13   14   14   17   22   27   32   38   41   43   47   49   51   54   58 
LCS_GDT     D      83     D      83      4    8   38     4    4    4    5    8   11   12   19   22   28   31   35   38   42   45   48   49   51   54   58 
LCS_GDT     S      84     S      84      4   10   38     4    4    6    8   10   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     K      85     K      85      3   10   38     0    3    6    8   11   16   19   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     P      86     P      86      4   10   38     2    4    6    9   12   16   19   21   26   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     F      87     F      87      4   10   38     3    4    6    9   12   16   19   21   27   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     C      88     C      88      4   10   38     3    4    6   10   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     H      89     H      89      4   10   38     3    4    5    8   12   16   18   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     I      90     I      90      4   10   38     3    3    6    9   12   16   19   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     H      91     H      91      4   10   38     3    3    6    9   12   16   19   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     V      92     V      92      3   10   38     3    6    8   10   15   21   24   28   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     L      93     L      93      3   10   38     1    4    6   10   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     L      94     L      94      3   10   38     0    3    5   10   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     G      95     G      95      3   10   38     3    7    7   11   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     K      96     K      96      3    9   38     4    7    7   11   14   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     D      97     D      97      6    8   38     4    5    6    7   13   16   21   23   28   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     G      98     G      98      6    8   38     4    5    6    6    8   11   16   23   26   28   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     E      99     E      99      6    8   38     4    5    6    7    9   11   16   19   23   25   31   35   36   41   45   48   49   51   54   58 
LCS_GDT     V     100     V     100      6    8   38     4    5    6    7    9   14   19   23   27   31   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     Y     101     Y     101      6    8   38     3    5    6    8    9   16   21   23   28   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     G     102     G     102      6    8   38     3    5    7   11   13   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     G     103     G     103      4    8   38     3    7    7   11   13   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     H     104     H     104      4    8   38     3    7    7   11   13   17   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     L     105     L     105      4    7   38     3    3    5   10   13   16   21   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     F     106     F     106      4    6   38     3    3    5   10   12   12   18   23   29   32   34   39   40   43   45   48   49   51   54   58 
LCS_GDT     S     107     S     107      4    6   38     3    3    5    5    8   10   10   12   14   15   20   33   38   42   45   48   49   51   54   58 
LCS_GDT     A     108     A     108      4    6   18     3    4    5    6    6    7    8   11   14   15   16   17   19   25   27   32   41   48   53   58 
LCS_GDT     E     109     E     109      4    5   18     3    4    4    6    6    8   10   12   14   15   16   17   28   35   39   43   46   49   54   58 
LCS_GDT     V     110     V     110      4   10   18     3    4    4    6   10   10   11   12   14   21   24   27   31   36   39   43   46   49   54   58 
LCS_GDT     F     111     F     111      4   10   18     3    4    4    7   10   10   11   12   14   15   16   17   24   25   27   28   31   46   48   50 
LCS_GDT     A     112     A     112      4   10   18     3    3    5    7   10   10   11   11   12   13   16   18   24   25   27   29   32   38   40   42 
LCS_GDT     C     113     C     113      4   10   18     3    3    6    7   10   10   11   12   14   15   16   17   24   25   27   30   33   36   40   46 
LCS_GDT     E     114     E     114      4   10   18     3    4    6    7   10   10   11   12   14   15   17   21   23   27   32   36   39   40   42   46 
LCS_GDT     V     115     V     115      5   10   18     3    5    6    7   10   10   11   12   16   19   20   21   26   31   35   36   39   40   42   46 
LCS_GDT     F     116     F     116      5   10   18     4    5    6    7   10   13   14   14   17   19   20   23   26   31   35   36   39   41   44   46 
LCS_GDT     V     117     V     117      5   10   19     4    5    6    7   10   10   11   12   14   15   16   16   18   20   25   30   38   39   41   46 
LCS_GDT     L     118     L     118      5   10   19     4    5    6    7   10   10   11   12   14   15   20   24   25   26   27   29   33   39   45   47 
LCS_GDT     P     119     P     119      5   10   19     4    5    5    7    9   11   13   13   14   15   20   24   25   26   27   28   33   36   41   45 
LCS_GDT     L     120     L     120      4    9   19     3    4    4    6    9   11   13   13   14   15   20   24   25   26   27   30   34   36   41   46 
LCS_GDT     S     121     S     121      4   11   19     3    4    6    9    9   11   13   13   14   15   20   24   25   26   27   30   34   36   41   46 
LCS_GDT     G     122     G     122      3   11   19     3    4    6    9    9   11   13   13   14   15   20   24   25   26   27   30   34   36   41   46 
LCS_GDT     E     123     E     123      5   11   19     3    4    6    9    9   11   13   13   14   15   20   24   25   26   27   30   34   36   41   46 
LCS_GDT     A     124     A     124      5   11   19     3    4    6    9    9   11   13   13   14   15   20   24   25   26   27   30   34   36   41   46 
LCS_GDT     P     125     P     125      5   11   19     3    4    5    9    9   11   13   13   14   15   20   24   25   26   27   30   34   36   41   46 
LCS_GDT     E     126     E     126      5   11   19     3    4    6    7    8   11   13   13   14   15   20   24   25   26   27   30   34   36   41   46 
LCS_GDT     R     127     R     127      5   11   19     2    4    6    7    9   11   13   13   14   15   20   24   25   32   37   39   42   45   50   55 
LCS_GDT     A     128     A     128      5   11   19     2    4    6    9    9   11   13   13   14   15   20   24   25   30   33   37   41   44   50   55 
LCS_GDT     F     129     F     129      5   11   19     3    4    6    9    9   11   13   13   14   15   22   24   32   37   41   45   48   50   52   55 
LCS_GDT     D     130     D     130      4   11   19     3    4    6    9    9   11   13   13   18   26   29   35   37   41   45   46   49   51   52   55 
LCS_GDT     E     131     E     131      4   11   19     3    4    6    9    9   11   17   20   29   29   34   38   40   43   45   48   49   51   52   55 
LCS_GDT     Q     132     Q     132      4    7   19     4    5    8   14   17   21   24   25   29   32   34   39   40   43   45   48   49   51   52   55 
LCS_GDT     T     133     T     133      4    6   19     3    3    9   11   13   17   21   23   28   32   34   39   40   43   45   48   49   51   52   55 
LCS_GDT     G     134     G     134      4    7   19     3    3    5   10   14   17   21   23   29   32   34   39   40   43   45   48   49   51   52   55 
LCS_GDT     L     135     L     135      3    7   19     0    3    5    6    7    7    8    8   10   10   16   20   30   38   45   46   49   50   52   54 
LCS_GDT     F     136     F     136      3    7   16     2    3    4    6    7    7    8    8   10   10   10   17   23   25   26   33   35   46   49   54 
LCS_GDT     L     137     L     137      4    7   12     3    3    4    6    7    7    8    8   10   10   10   11   13   25   26   29   35   37   38   40 
LCS_GDT     W     138     W     138      4    7   12     3    3    4    6    7    7    8    8   10   10   18   21   23   25   30   42   45   46   49   54 
LCS_GDT     L     139     L     139      4    7   12     3    3    4    6    7    7    7    7   10   10   16   21   23   25   36   42   45   46   49   54 
LCS_GDT     E     140     E     140      4    7   12     0    3    4    6    7    7    7    8   10   10   16   17   23   25   30   42   45   46   49   51 
LCS_AVERAGE  LCS_A:  12.34  (   4.53    8.57   23.91 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     16     18     21     25     28     29     32     34     39     40     43     45     48     49     51     54     58 
GDT PERCENT_CA   8.33   9.85  11.36  12.12  13.64  15.91  18.94  21.21  21.97  24.24  25.76  29.55  30.30  32.58  34.09  36.36  37.12  38.64  40.91  43.94
GDT RMS_LOCAL    0.18   0.33   0.75   0.89   1.54   1.81   2.29   2.63   2.68   3.43   3.33   4.02   4.09   4.42   4.63   5.06   5.16   5.41   6.34   6.72
GDT RMS_ALL_CA  25.75  25.28  25.19  25.04  23.41  23.19  21.47  21.65  21.76  17.44  21.15  17.38  17.35  17.48  17.55  17.68  17.70  17.61  17.98  18.15

#      Molecule1      Molecule2       DISTANCE
LGA    G       9      G       9         24.837
LGA    K      10      K      10         23.255
LGA    G      11      G      11         20.437
LGA    F      12      F      12         22.675
LGA    L      13      L      13         24.378
LGA    L      14      L      14         24.468
LGA    R      15      R      15         26.536
LGA    L      16      L      16         28.086
LGA    D      17      D      17         30.897
LGA    Y      18      Y      18         29.807
LGA    G      19      G      19         31.946
LGA    K      20      K      20         36.403
LGA    D      21      D      21         37.415
LGA    L      22      L      22         33.262
LGA    V      23      V      23         32.725
LGA    R      24      R      24         39.039
LGA    Q      25      Q      25         39.615
LGA    I      26      I      26         35.211
LGA    E      27      E      27         38.636
LGA    E      28      E      28         43.876
LGA    F      29      F      29         40.994
LGA    L      30      L      30         38.990
LGA    E      31      E      31         45.322
LGA    E      32      E      32         47.349
LGA    K      33      K      33         44.980
LGA    G      34      G      34         43.193
LGA    I      35      I      35         37.059
LGA    H      36      H      36         34.525
LGA    A      37      A      37         29.288
LGA    A      38      A      38         26.635
LGA    H      39      H      39         24.804
LGA    I      40      I      40         22.225
LGA    S      41      S      41         20.609
LGA    A      42      A      42         15.869
LGA    I      43      I      43         10.843
LGA    G      44      G      44          6.031
LGA    A      45      A      45          2.606
LGA    V      46      V      46          4.052
LGA    R      47      R      47          3.662
LGA    S      48      S      48          2.576
LGA    A      49      A      49          2.929
LGA    V      50      V      50          3.835
LGA    I      51      I      51          3.529
LGA    G      52      G      52          1.823
LGA    Y      53      Y      53          1.816
LGA    Y      54      Y      54          3.694
LGA    D      55      D      55          2.044
LGA    Q      56      Q      56          3.222
LGA    E      57      E      57          3.915
LGA    K      58      K      58          5.594
LGA    K      59      K      59          3.130
LGA    E      60      E      60          3.531
LGA    Y      61      Y      61          3.737
LGA    V      62      V      62          3.135
LGA    K      63      K      63          2.192
LGA    K      64      K      64          1.629
LGA    E      65      E      65          1.055
LGA    L      66      L      66          1.190
LGA    M      67      M      67          1.133
LGA    E      68      E      68          0.374
LGA    P      69      P      69          0.472
LGA    L      70      L      70          3.308
LGA    E      71      E      71          2.936
LGA    I      72      I      72          3.523
LGA    L      73      L      73          3.727
LGA    S      74      S      74          7.136
LGA    L      75      L      75         10.835
LGA    S      76      S      76         16.656
LGA    G      77      G      77         17.135
LGA    N      78      N      78         23.101
LGA    V      79      V      79         24.616
LGA    S      80      S      80         28.191
LGA    M      81      M      81         32.547
LGA    K      82      K      82         33.709
LGA    D      83      D      83         37.274
LGA    S      84      S      84         39.233
LGA    K      85      K      85         35.649
LGA    P      86      P      86         31.717
LGA    F      87      F      87         24.422
LGA    C      88      C      88         21.910
LGA    H      89      H      89         15.701
LGA    I      90      I      90          9.651
LGA    H      91      H      91          5.107
LGA    V      92      V      92          3.828
LGA    L      93      L      93          5.831
LGA    L      94      L      94          8.544
LGA    G      95      G      95         10.287
LGA    K      96      K      96         13.780
LGA    D      97      D      97         18.152
LGA    G      98      G      98         20.012
LGA    E      99      E      99         19.671
LGA    V     100      V     100         14.306
LGA    Y     101      Y     101         13.232
LGA    G     102      G     102          9.124
LGA    G     103      G     103          7.279
LGA    H     104      H     104         11.128
LGA    L     105      L     105         15.712
LGA    F     106      F     106         21.173
LGA    S     107      S     107         23.444
LGA    A     108      A     108         27.051
LGA    E     109      E     109         30.885
LGA    V     110      V     110         28.158
LGA    F     111      F     111         28.091
LGA    A     112      A     112         26.778
LGA    C     113      C     113         22.973
LGA    E     114      E     114         20.284
LGA    V     115      V     115         15.035
LGA    F     116      F     116         15.653
LGA    V     117      V     117         12.395
LGA    L     118      L     118         15.495
LGA    P     119      P     119         15.397
LGA    L     120      L     120         21.523
LGA    S     121      S     121         24.635
LGA    G     122      G     122         27.540
LGA    E     123      E     123         24.574
LGA    A     124      A     124         20.745
LGA    P     125      P     125         15.490
LGA    E     126      E     126         13.945
LGA    R     127      R     127         11.876
LGA    A     128      A     128         16.170
LGA    F     129      F     129         17.057
LGA    D     130      D     130         11.890
LGA    E     131      E     131         11.915
LGA    Q     132      Q     132          8.704
LGA    T     133      T     133         11.537
LGA    G     134      G     134         16.239
LGA    L     135      L     135         18.931
LGA    F     136      F     136         23.380
LGA    L     137      L     137         23.546
LGA    W     138      W     138         22.732
LGA    L     139      L     139         25.835
LGA    E     140      E     140         26.141

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0     28    2.63    19.886    17.044     1.025

LGA_LOCAL      RMSD =  2.631  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.538  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 16.597  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.706458 * X  +   0.301073 * Y  +   0.640525 * Z  +  45.047577
  Y_new =   0.704056 * X  +  -0.391355 * Y  +  -0.592576 * Z  +   1.107845
  Z_new =   0.072264 * X  +   0.869595 * Y  +  -0.488448 * Z  +  20.663763 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.082575   -1.059018  [ DEG:   119.3228    -60.6772 ]
  Theta =  -0.072327   -3.069266  [ DEG:    -4.1440   -175.8560 ]
  Phi   =   0.783696   -2.357897  [ DEG:    44.9025   -135.0975 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS393_5-D1                               
REMARK     2: T0312_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS393_5-D1.T0312_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0   28   2.63  17.044    16.60
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS393_5-D1
PFRMAT TS
TARGET T0312
MODEL 5
PARENT N/A
ATOM      9  CA  GLY     9      43.425  10.766  29.608  1.00 25.00           C
ATOM     10  CA  LYS    10      44.069  11.838  26.052  1.00 25.00           C
ATOM     11  CA  GLY    11      44.217  11.008  22.361  1.00 25.00           C
ATOM     12  CA  PHE    12      42.393   7.840  21.417  1.00 25.00           C
ATOM     13  CA  LEU    13      40.080   4.840  22.038  1.00 25.00           C
ATOM     14  CA  LEU    14      40.629   3.355  18.519  1.00 25.00           C
ATOM     15  CA  ARG    15      39.114   0.579  16.336  1.00 25.00           C
ATOM     16  CA  LEU    16      35.332   0.261  15.805  1.00 25.00           C
ATOM     17  CA  ASP    17      32.109   0.900  13.930  1.00 25.00           C
ATOM     18  CA  TYR    18      30.230  -0.273  10.830  1.00 25.00           C
ATOM     19  CA  GLY    19      26.715  -1.102   9.559  1.00 25.00           C
ATOM     20  CA  LYS    20      24.116  -0.631  12.289  1.00 25.00           C
ATOM     21  CA  ASP    21      22.351  -0.495  15.685  1.00 25.00           C
ATOM     22  CA  LEU    22      25.737  -0.302  17.464  1.00 25.00           C
ATOM     23  CA  VAL    23      26.823   2.543  15.141  1.00 25.00           C
ATOM     24  CA  ARG    24      23.557   4.409  15.860  1.00 25.00           C
ATOM     25  CA  GLN    25      24.102   3.964  19.624  1.00 25.00           C
ATOM     26  CA  ILE    26      27.676   5.300  19.290  1.00 25.00           C
ATOM     27  CA  GLU    27      26.388   8.329  17.332  1.00 25.00           C
ATOM     28  CA  GLU    28      23.759   8.989  20.038  1.00 25.00           C
ATOM     29  CA  PHE    29      26.458   8.778  22.747  1.00 25.00           C
ATOM     30  CA  LEU    30      28.647  11.240  20.793  1.00 25.00           C
ATOM     31  CA  GLU    31      25.684  13.643  20.454  1.00 25.00           C
ATOM     32  CA  GLU    32      25.022  13.395  24.218  1.00 25.00           C
ATOM     33  CA  LYS    33      26.943  14.878  27.194  1.00 25.00           C
ATOM     34  CA  GLY    34      29.713  15.379  24.615  1.00 25.00           C
ATOM     35  CA  ILE    35      32.484  13.014  23.531  1.00 25.00           C
ATOM     36  CA  HIS    36      35.724  13.789  25.266  1.00 25.00           C
ATOM     37  CA  ALA    37      37.757  11.067  23.639  1.00 25.00           C
ATOM     38  CA  ALA    38      37.428  10.069  19.982  1.00 25.00           C
ATOM     39  CA  HIS    39      35.943   6.567  19.871  1.00 25.00           C
ATOM     40  CA  ILE    40      36.878   6.219  16.250  1.00 25.00           C
ATOM     41  CA  SER    41      37.304   4.467  12.853  1.00 25.00           C
ATOM     42  CA  ALA    42      40.592   5.681  11.309  1.00 25.00           C
ATOM     43  CA  ILE    43      44.134   7.008  10.603  1.00 25.00           C
ATOM     44  CA  GLY    44      46.507   9.941  10.753  1.00 25.00           C
ATOM     45  CA  ALA    45      49.367  12.479  11.282  1.00 25.00           C
ATOM     46  CA  VAL    46      51.900   9.852  10.100  1.00 25.00           C
ATOM     47  CA  ARG    47      50.316   8.665   6.919  1.00 25.00           C
ATOM     48  CA  SER    48      48.830   5.184   7.609  1.00 25.00           C
ATOM     49  CA  ALA    49      49.270   2.456  10.220  1.00 25.00           C
ATOM     50  CA  VAL    50      49.557  -0.901  11.989  1.00 25.00           C
ATOM     51  CA  ILE    51      49.817  -1.478  15.681  1.00 25.00           C
ATOM     52  CA  GLY    52      49.624  -5.249  15.413  1.00 25.00           C
ATOM     53  CA  TYR    53      50.399  -7.211  18.611  1.00 25.00           C
ATOM     54  CA  TYR    54      49.612  -9.538  21.538  1.00 25.00           C
ATOM     55  CA  ASP    55      51.058 -13.094  21.116  1.00 25.00           C
ATOM     56  CA  GLN    56      52.236 -16.337  22.738  1.00 25.00           C
ATOM     57  CA  GLU    57      55.873 -16.822  23.745  1.00 25.00           C
ATOM     58  CA  LYS    58      58.370 -15.595  21.182  1.00 25.00           C
ATOM     59  CA  LYS    59      57.338 -16.408  17.595  1.00 25.00           C
ATOM     60  CA  GLU    60      54.887 -15.623  14.815  1.00 25.00           C
ATOM     61  CA  TYR    61      52.418 -12.714  14.599  1.00 25.00           C
ATOM     62  CA  VAL    62      50.808 -11.998  11.174  1.00 25.00           C
ATOM     63  CA  LYS    63      50.275  -8.342  10.129  1.00 25.00           C
ATOM     64  CA  LYS    64      48.936  -5.176   8.477  1.00 25.00           C
ATOM     65  CA  GLU    65      48.568  -1.692   6.899  1.00 25.00           C
ATOM     66  CA  LEU    66      45.612   0.681   7.221  1.00 25.00           C
ATOM     67  CA  MET    67      45.631   2.368   3.803  1.00 25.00           C
ATOM     68  CA  GLU    68      43.383   5.391   4.043  1.00 25.00           C
ATOM     69  CA  PRO    69      43.502   9.059   4.878  1.00 25.00           C
ATOM     70  CA  LEU    70      42.425  11.481   7.587  1.00 25.00           C
ATOM     71  CA  GLU    71      41.007  11.546  11.080  1.00 25.00           C
ATOM     72  CA  ILE    72      43.138  11.292  14.270  1.00 25.00           C
ATOM     73  CA  LEU    73      41.564   8.140  15.792  1.00 25.00           C
ATOM     74  CA  SER    74      43.495   4.887  15.396  1.00 25.00           C
ATOM     75  CA  LEU    75      44.763   2.333  12.836  1.00 25.00           C
ATOM     76  CA  SER    76      42.440  -0.680  12.626  1.00 25.00           C
ATOM     77  CA  GLY    77      44.908  -3.135  14.086  1.00 25.00           C
ATOM     78  CA  ASN    78      43.143  -6.524  14.585  1.00 25.00           C
ATOM     79  CA  VAL    79      46.109  -8.832  14.037  1.00 25.00           C
ATOM     80  CA  SER    80      44.690 -12.128  15.309  1.00 25.00           C
ATOM     81  CA  MET    81      43.072 -14.544  12.778  1.00 25.00           C
ATOM     82  CA  LYS    82      40.970 -17.642  12.064  1.00 25.00           C
ATOM     83  CA  ASP    83      39.314 -19.551  14.885  1.00 25.00           C
ATOM     84  CA  SER    84      38.984 -16.388  16.947  1.00 25.00           C
ATOM     85  CA  LYS    85      40.303 -13.063  18.206  1.00 25.00           C
ATOM     86  CA  PRO    86      40.762  -9.495  19.371  1.00 25.00           C
ATOM     87  CA  PHE    87      43.557  -6.966  19.947  1.00 25.00           C
ATOM     88  CA  CYS    88      41.681  -3.953  18.658  1.00 25.00           C
ATOM     89  CA  HIS    89      43.879  -0.799  18.399  1.00 25.00           C
ATOM     90  CA  ILE    90      46.513   1.806  17.604  1.00 25.00           C
ATOM     91  CA  HIS    91      48.668   4.724  16.336  1.00 25.00           C
ATOM     92  CA  VAL    92      46.763   7.561  18.098  1.00 25.00           C
ATOM     93  CA  LEU    93      48.197   9.961  15.568  1.00 25.00           C
ATOM     94  CA  LEU    94      48.115  12.559  18.383  1.00 25.00           C
ATOM     95  CA  GLY    95      46.046  14.909  16.283  1.00 25.00           C
ATOM     96  CA  LYS    96      48.380  17.674  15.164  1.00 25.00           C
ATOM     97  CA  ASP    97      51.125  16.856  17.693  1.00 25.00           C
ATOM     98  CA  GLY    98      52.183  14.018  15.340  1.00 25.00           C
ATOM     99  CA  GLU    99      54.181  11.385  17.274  1.00 25.00           C
ATOM    100  CA  VAL   100      51.845   9.228  19.368  1.00 25.00           C
ATOM    101  CA  TYR   101      50.913   7.613  22.702  1.00 25.00           C
ATOM    102  CA  GLY   102      47.180   7.060  23.517  1.00 25.00           C
ATOM    103  CA  GLY   103      45.595   3.909  22.049  1.00 25.00           C
ATOM    104  CA  HIS   104      43.265   1.053  23.059  1.00 25.00           C
ATOM    105  CA  LEU   105      39.820  -0.176  22.017  1.00 25.00           C
ATOM    106  CA  PHE   106      36.752  -2.020  20.732  1.00 25.00           C
ATOM    107  CA  SER   107      37.570  -5.550  21.788  1.00 25.00           C
ATOM    108  CA  ALA   108      36.444  -7.316  24.910  1.00 25.00           C
ATOM    109  CA  GLU   109      36.309  -4.712  27.746  1.00 25.00           C
ATOM    110  CA  VAL   110      38.244  -1.615  26.844  1.00 25.00           C
ATOM    111  CA  PHE   111      41.995  -2.156  27.119  1.00 25.00           C
ATOM    112  CA  ALA   112      42.952  -3.885  23.850  1.00 25.00           C
ATOM    113  CA  CYS   113      46.353  -2.435  24.395  1.00 25.00           C
ATOM    114  CA  GLU   114      48.358  -0.532  21.819  1.00 25.00           C
ATOM    115  CA  VAL   115      50.465   2.606  21.691  1.00 25.00           C
ATOM    116  CA  PHE   116      52.476   1.828  18.519  1.00 25.00           C
ATOM    117  CA  VAL   117      54.267   5.109  17.879  1.00 25.00           C
ATOM    118  CA  LEU   118      54.152   6.828  14.488  1.00 25.00           C
ATOM    119  CA  PRO   119      57.078   8.827  13.262  1.00 25.00           C
ATOM    120  CA  LEU   120      56.394   7.316   9.893  1.00 25.00           C
ATOM    121  CA  SER   121      59.615   6.767   7.949  1.00 25.00           C
ATOM    122  CA  GLY   122      58.888   3.054   7.572  1.00 25.00           C
ATOM    123  CA  GLU   123      57.536   2.440  11.086  1.00 25.00           C
ATOM    124  CA  ALA   124      55.357   0.735  13.614  1.00 25.00           C
ATOM    125  CA  PRO   125      57.748   1.232  16.517  1.00 25.00           C
ATOM    126  CA  GLU   126      56.973  -1.227  19.365  1.00 25.00           C
ATOM    127  CA  ARG   127      55.590  -3.636  22.026  1.00 25.00           C
ATOM    128  CA  ALA   128      52.406  -4.915  23.667  1.00 25.00           C
ATOM    129  CA  PHE   129      50.174  -6.635  26.216  1.00 25.00           C
ATOM    130  CA  ASP   130      53.348  -7.553  28.041  1.00 25.00           C
ATOM    131  CA  GLU   131      54.230  -9.732  31.021  1.00 25.00           C
ATOM    132  CA  GLN   132      52.810 -13.157  31.860  1.00 25.00           C
ATOM    133  CA  THR   133      49.083 -12.466  31.924  1.00 25.00           C
ATOM    134  CA  GLY   134      50.021  -9.499  34.095  1.00 25.00           C
ATOM    135  CA  LEU   135      50.268  -8.536  37.811  1.00 25.00           C
ATOM    136  CA  PHE   136      49.889  -6.416  40.945  1.00 25.00           C
ATOM    137  CA  LEU   137      49.876  -6.355  44.759  1.00 25.00           C
ATOM    138  CA  TRP   138      50.688  -2.664  44.570  1.00 25.00           C
ATOM    139  CA  LEU   139      50.741   0.173  47.143  1.00 25.00           C
ATOM    140  CA  GLU   140      52.591   3.023  48.853  1.00 25.00           C
TER
END
