
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0312TS599_3-D1
# Molecule2: number of CA atoms  132 ( 1043),  selected  132 , name T0312_D1.pdb
# PARAMETERS: T0312TS599_3-D1.T0312_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        70 - 111         4.85    16.97
  LCS_AVERAGE:     23.46

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        21 - 40          1.92    17.82
  LCS_AVERAGE:      9.61

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        21 - 36          0.83    17.33
  LCS_AVERAGE:      5.77

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     G       9     G       9      5   14   27     3    4   10   14   15   15   15   16   19   20   22   23   26   27   30   32   38   42   43   47 
LCS_GDT     K      10     K      10      7   14   27     4    7   11   14   15   15   15   16   19   20   22   23   26   27   30   32   38   42   43   47 
LCS_GDT     G      11     G      11      7   14   27     4    7   11   14   15   15   15   16   19   20   22   23   26   27   30   32   36   40   43   47 
LCS_GDT     F      12     F      12     10   14   27     4    8   11   14   15   15   15   16   19   20   22   23   26   27   30   32   38   42   43   47 
LCS_GDT     L      13     L      13     10   14   27     4    8   11   14   15   15   15   16   19   20   22   23   26   27   30   32   36   40   43   47 
LCS_GDT     L      14     L      14     10   14   27     4    8   11   14   15   15   15   16   19   20   22   23   26   27   30   32   38   42   44   51 
LCS_GDT     R      15     R      15     10   14   27     3    8   11   14   15   15   15   16   19   20   22   23   26   27   30   32   38   42   44   51 
LCS_GDT     L      16     L      16     10   14   29     3    8   11   14   15   15   15   18   22   27   36   39   42   44   51   55   57   59   68   68 
LCS_GDT     D      17     D      17     10   14   29     4    8   11   14   15   15   16   23   28   33   39   43   47   54   58   61   63   66   68   68 
LCS_GDT     Y      18     Y      18     10   14   29     4    8   11   14   15   15   22   27   32   39   47   49   52   54   58   61   63   66   68   69 
LCS_GDT     G      19     G      19     10   18   29     4    7   11   14   16   23   32   38   43   46   47   51   57   63   64   66   67   71   72   75 
LCS_GDT     K      20     K      20     10   18   29     4    4   11   14   16   22   32   38   43   46   54   57   60   63   65   68   71   72   74   76 
LCS_GDT     D      21     D      21     16   20   29    11   15   16   19   23   27   32   38   43   46   47   52   59   63   65   69   71   73   76   77 
LCS_GDT     L      22     L      22     16   20   29    11   15   16   19   23   27   32   38   43   46   47   57   60   63   65   69   71   73   76   77 
LCS_GDT     V      23     V      23     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     R      24     R      24     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     Q      25     Q      25     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     I      26     I      26     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     E      27     E      27     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     E      28     E      28     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     F      29     F      29     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     L      30     L      30     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     E      31     E      31     16   20   29    11   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     E      32     E      32     16   20   29     8   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     K      33     K      33     16   20   29     7   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     G      34     G      34     16   20   29     8   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     I      35     I      35     16   20   29     8   15   16   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     H      36     H      36     16   20   29     3   10   16   17   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     A      37     A      37      5   20   29     3    5    7    9   20   26   32   37   42   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     A      38     A      38      7   20   29     4    7   10   16   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     H      39     H      39      7   20   29     4    7    8   14   23   29   32   37   41   44   47   51   60   63   65   69   71   73   76   77 
LCS_GDT     I      40     I      40      7   20   29     4    7   11   15   21   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     S      41     S      41      7   19   29     4    7    8   16   23   29   32   38   43   46   51   57   60   63   65   69   71   73   76   77 
LCS_GDT     A      42     A      42      7    9   29     4    7   11   15   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     I      43     I      43      7    9   29     4    7    8   16   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     G      44     G      44      7    9   32     4    7   11   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     A      45     A      45      3   11   32     3    3    5   11   21   25   31   33   38   42   48   57   60   63   65   69   71   73   76   77 
LCS_GDT     V      46     V      46      5   12   32     3    5    7   10   12   14   15   18   20   21   24   29   32   36   48   60   70   73   76   77 
LCS_GDT     R      47     R      47      7   12   32     3    6    9   10   12   14   15   18   20   22   28   35   42   46   63   67   70   73   76   77 
LCS_GDT     S      48     S      48      7   12   32     3    6    9   10   12   14   16   18   20   23   31   37   43   55   63   67   69   73   76   77 
LCS_GDT     A      49     A      49      7   12   32     3    6    9   10   12   14   16   18   20   21   25   29   34   39   46   51   59   66   70   74 
LCS_GDT     V      50     V      50      7   12   32     3    6    9   10   12   14   16   18   20   21   24   29   32   37   43   50   59   63   67   73 
LCS_GDT     I      51     I      51      7   12   32     3    6    9   11   12   14   17   18   20   22   25   30   32   34   37   40   42   50   57   63 
LCS_GDT     G      52     G      52      7   12   32     3    6    9   10   12   14   17   18   20   22   25   30   32   34   37   40   42   45   47   49 
LCS_GDT     Y      53     Y      53      7   12   32     3    6    9   10   12   14   16   18   20   22   25   29   32   34   37   39   42   44   47   49 
LCS_GDT     Y      54     Y      54      6   12   32     3    6    9   10   12   14   16   18   20   22   25   29   32   34   37   39   42   44   46   49 
LCS_GDT     D      55     D      55      6   12   32     3    5    8   10   12   13   16   18   20   22   24   29   32   32   35   36   37   40   43   49 
LCS_GDT     Q      56     Q      56      6   12   32     3    6    9   10   12   14   16   18   20   22   25   29   32   32   35   36   37   40   43   49 
LCS_GDT     E      57     E      57      4   12   32     3    4    4    6   11   14   16   18   20   22   25   29   32   32   35   36   37   40   43   49 
LCS_GDT     K      58     K      58      4   10   32     3    4    5    7    9   10   14   18   20   22   25   29   32   32   35   39   42   44   46   49 
LCS_GDT     K      59     K      59      4   14   32     3    4   11   11   12   14   16   18   20   22   25   29   32   34   37   39   42   44   47   49 
LCS_GDT     E      60     E      60      6   14   32     3    4    7    8   11   13   16   18   20   21   25   30   32   34   37   40   42   45   47   49 
LCS_GDT     Y      61     Y      61     10   14   32     4   10   11   11   12   14   17   18   20   22   25   30   32   34   37   40   42   45   47   49 
LCS_GDT     V      62     V      62     10   14   32     4   10   11   11   12   14   17   18   20   22   25   30   32   34   37   40   42   45   47   49 
LCS_GDT     K      63     K      63     10   14   32     5   10   11   11   12   14   17   18   20   22   25   30   32   34   37   40   42   45   47   49 
LCS_GDT     K      64     K      64     10   14   32     5   10   11   11   12   14   17   18   20   22   25   30   32   34   37   40   42   45   47   50 
LCS_GDT     E      65     E      65     10   14   32     5   10   11   11   12   14   17   18   20   22   25   30   32   34   37   40   42   45   47   54 
LCS_GDT     L      66     L      66     10   14   32     4   10   11   11   12   14   17   18   20   22   25   30   32   37   41   49   56   63   66   73 
LCS_GDT     M      67     M      67     10   14   32     3   10   11   11   12   14   17   18   20   22   25   29   32   34   37   42   51   59   65   70 
LCS_GDT     E      68     E      68     10   14   40     5   10   11   11   12   14   17   18   20   22   25   28   32   39   52   58   61   65   75   77 
LCS_GDT     P      69     P      69     10   14   41     5   10   11   11   12   14   17   18   20   22   25   34   42   47   51   67   67   73   76   77 
LCS_GDT     L      70     L      70     10   14   42     3   10   11   11   12   14   17   18   32   37   41   52   60   63   65   69   71   73   76   77 
LCS_GDT     E      71     E      71      9   14   42     3    7   11   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     I      72     I      72      7   14   42     3    7   11   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     L      73     L      73      7   14   42     4    7   10   16   21   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     S      74     S      74      7   14   42     4    7   10   19   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     L      75     L      75      7   14   42     4    6   10   19   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     S      76     S      76      7   14   42     9   14   16   19   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     G      77     G      77      7   11   42     3    5    8   19   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     N      78     N      78      7   11   42     3   14   16   19   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     V      79     V      79      7   11   42     3    6   10   19   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     S      80     S      80      6   11   42     3    5   10   16   22   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     M      81     M      81      6   11   42     3    5    7   11   19   24   32   37   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     K      82     K      82      6   11   42     3    4    7   11   15   16   22   27   42   46   54   57   60   63   65   68   69   72   74   76 
LCS_GDT     D      83     D      83      6   11   42     3    5    7   11   15   16   22   27   43   46   54   57   60   63   65   68   70   72   74   76 
LCS_GDT     S      84     S      84      5   14   42     3    6   10   19   22   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     K      85     K      85      8   14   42     5    8   10   17   23   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     P      86     P      86      8   14   42     5    8    8   10   13   15   22   36   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     F      87     F      87      8   14   42     5    8    8   16   22   27   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     C      88     C      88      8   14   42     4    8    8   11   18   26   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     H      89     H      89      8   14   42     5    8   11   17   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     I      90     I      90      8   14   42     5    8   11   16   21   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     H      91     H      91      8   14   42     4    8    8   15   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     V      92     V      92      8   14   42     4    8   11   15   23   29   32   38   42   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     L      93     L      93      6   14   42     4    6   10   16   22   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     L      94     L      94      6   14   42     4    5   11   13   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     G      95     G      95      6   14   42     4    6   11   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     K      96     K      96      4   14   42     3    6   11   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     D      97     D      97      5   14   42     3    6    8   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     G      98     G      98      6   14   42     3    6    7   12   21   29   31   37   41   42   49   55   60   63   65   69   71   73   76   77 
LCS_GDT     E      99     E      99      6   14   42     3    5    7   14   23   29   31   37   41   42   47   50   56   62   65   69   71   73   76   77 
LCS_GDT     V     100     V     100      6   14   42     3    5    7   14   23   29   32   37   41   42   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     Y     101     Y     101      6   14   42     3    5    8   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     G     102     G     102      6   14   42     3    5    8   15   23   29   32   37   41   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     G     103     G     103      6   14   42     3    5   10   16   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     H     104     H     104      3   14   42     3    5   10   16   23   29   32   38   43   46   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     L     105     L     105      3   11   42     3    3    7    8   10   15   21   25   34   40   46   55   60   63   65   69   71   73   76   77 
LCS_GDT     F     106     F     106      3   10   42     3    4   11   15   23   29   32   37   41   45   54   57   60   63   65   69   71   73   76   77 
LCS_GDT     S     107     S     107      3    4   42     3    3    3    7   15   24   32   37   41   45   54   57   60   63   65   68   71   73   76   77 
LCS_GDT     A     108     A     108      3    4   42     3    3    3    4    5    8   16   20   28   34   40   43   48   54   58   61   63   66   68   69 
LCS_GDT     E     109     E     109      3    4   42     3    3    3    3    5   10   16   20   28   33   40   43   48   54   58   61   63   66   68   68 
LCS_GDT     V     110     V     110      3    4   42     3    3    4    4    6   10   16   20   28   34   40   43   48   54   58   61   63   66   68   69 
LCS_GDT     F     111     F     111      3    4   42     3    3    4    4    5    6    6    7   11   13   17   18   20   22   33   38   45   53   54   65 
LCS_GDT     A     112     A     112      3    4   18     3    3    4    4    5    6    6    7    8    9   12   14   20   21   27   29   33   39   42   52 
LCS_GDT     C     113     C     113      3    4   18     0    3    4    4    5    8   11   11   14   15   18   22   24   35   42   49   50   52   53   56 
LCS_GDT     E     114     E     114      8    9   18     4    8    8    8    8   10   11   12   14   15   24   28   33   36   40   49   50   52   53   56 
LCS_GDT     V     115     V     115      8    9   18     5    8    8    8    8   10   11   12   14   15   18   26   31   35   38   42   47   50   53   56 
LCS_GDT     F     116     F     116      8    9   18     4    8    8    8    8   10   11   12   14   14   18   22   24   27   31   35   39   42   44   48 
LCS_GDT     V     117     V     117      8    9   18     5    8    8    8    8   10   11   12   14   15   18   22   24   27   31   35   39   42   44   49 
LCS_GDT     L     118     L     118      8    9   18     5    8    8    8    8   10   11   12   14   14   17   22   23   26   28   31   37   42   43   49 
LCS_GDT     P     119     P     119      8    9   18     5    8    8    8    8   10   11   12   14   14   18   22   23   26   29   34   38   42   44   49 
LCS_GDT     L     120     L     120      8    9   18     5    8    8    8    8   10   11   12   14   14   17   22   23   26   28   31   37   42   44   49 
LCS_GDT     S     121     S     121      8    9   18     3    8    8    8    8   10   11   12   14   14   17   22   23   26   29   34   38   42   44   49 
LCS_GDT     G     122     G     122      4    9   18     3    4    5    7    7    9    9   11   14   15   17   22   27   32   36   46   49   53   58   63 
LCS_GDT     E     123     E     123      4    7   18     3    4    5    7    7   10   12   14   19   23   26   30   35   40   45   55   62   71   73   75 
LCS_GDT     A     124     A     124      4    7   18     3    4    5    7    7    7   11   13   19   23   26   29   35   39   42   49   58   68   73   75 
LCS_GDT     P     125     P     125      4    7   16     3    4    5    7   13   13   14   14   19   23   34   35   36   43   52   58   66   73   76   77 
LCS_GDT     E     126     E     126      3    7   16     3    3    5    7    7    7   10   14   19   23   34   35   39   43   52   65   69   73   76   77 
LCS_GDT     R     127     R     127      3    4   16     3    3    3    3    4    6    7   25   29   32   34   41   57   62   65   69   71   73   76   77 
LCS_GDT     A     128     A     128      3    4   16     3    3    5   10   17   25   31   32   37   41   49   54   60   63   65   69   71   73   76   77 
LCS_GDT     F     129     F     129      3    5   16     3    3    4    7   11   15   20   27   34   38   47   54   60   63   65   69   71   73   76   77 
LCS_GDT     D     130     D     130      3    5   16     3    3    4    6    8   15   20   22   29   35   43   51   60   63   65   69   71   73   76   77 
LCS_GDT     E     131     E     131      5    8   16     3    3    5    6    6   15   30   32   33   38   47   54   60   63   65   69   71   73   76   77 
LCS_GDT     Q     132     Q     132      5    9   16     4    5    6    7   11   15   30   32   33   37   44   50   60   63   65   69   71   73   76   77 
LCS_GDT     T     133     T     133      5    9   16     4    5    6    7   12   21   30   32   33   37   45   50   60   63   65   69   71   73   76   77 
LCS_GDT     G     134     G     134      5    9   16     4    5    6    7    8    8   25   30   32   39   47   54   60   63   65   69   71   73   76   77 
LCS_GDT     L     135     L     135      5    9   16     4    9   15   17   23   26   28   31   32   41   47   52   60   63   65   69   71   73   76   77 
LCS_GDT     F     136     F     136      5    9   16     4    5    6    7    8    8   11   13   25   32   35   42   47   50   58   63   67   72   72   76 
LCS_GDT     L     137     L     137      5    9   12     3    3    5    7    8    8    9   11   12   14   19   32   35   44   47   50   55   61   68   72 
LCS_GDT     W     138     W     138      5    9   12     3    4    6    7    8    8    9   11   11   13   14   15   15   18   21   24   25   31   37   42 
LCS_GDT     L     139     L     139      4    9   12     3    3    5    6    8    8    9   11   11   13   14   14   15   17   18   18   22   25   29   33 
LCS_GDT     E     140     E     140      4    9   12     3    3    5    7    8    8    9   11   11   13   14   14   15   17   18   18   22   25   29   33 
LCS_AVERAGE  LCS_A:  12.95  (   5.77    9.61   23.46 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     15     16     19     23     29     32     38     43     46     54     57     60     63     65     69     71     73     76     77 
GDT PERCENT_CA   8.33  11.36  12.12  14.39  17.42  21.97  24.24  28.79  32.58  34.85  40.91  43.18  45.45  47.73  49.24  52.27  53.79  55.30  57.58  58.33
GDT RMS_LOCAL    0.38   0.57   0.66   0.94   1.62   2.10   2.36   2.78   3.05   3.21   4.04   4.14   4.30   4.45   4.67   5.13   5.27   5.48   5.80   5.93
GDT RMS_ALL_CA  17.06  17.08  17.04  17.18  17.39  17.03  16.87  17.09  17.22  17.26  16.89  16.88  16.86  16.86  16.62  16.18  16.19  16.19  16.08  16.06

#      Molecule1      Molecule2       DISTANCE
LGA    G       9      G       9         32.821
LGA    K      10      K      10         32.589
LGA    G      11      G      11         32.426
LGA    F      12      F      12         28.050
LGA    L      13      L      13         28.448
LGA    L      14      L      14         22.475
LGA    R      15      R      15         22.213
LGA    L      16      L      16         15.250
LGA    D      17      D      17         14.005
LGA    Y      18      Y      18         10.752
LGA    G      19      G      19          4.106
LGA    K      20      K      20          3.456
LGA    D      21      D      21          3.827
LGA    L      22      L      22          3.206
LGA    V      23      V      23          2.560
LGA    R      24      R      24          2.788
LGA    Q      25      Q      25          2.768
LGA    I      26      I      26          1.891
LGA    E      27      E      27          1.560
LGA    E      28      E      28          2.188
LGA    F      29      F      29          2.546
LGA    L      30      L      30          1.573
LGA    E      31      E      31          1.843
LGA    E      32      E      32          3.165
LGA    K      33      K      33          2.973
LGA    G      34      G      34          2.319
LGA    I      35      I      35          1.218
LGA    H      36      H      36          2.353
LGA    A      37      A      37          5.202
LGA    A      38      A      38          3.650
LGA    H      39      H      39          5.768
LGA    I      40      I      40          3.253
LGA    S      41      S      41          3.576
LGA    A      42      A      42          4.342
LGA    I      43      I      43          3.807
LGA    G      44      G      44          8.248
LGA    A      45      A      45         10.240
LGA    V      46      V      46         16.895
LGA    R      47      R      47         19.063
LGA    S      48      S      48         18.461
LGA    A      49      A      49         19.921
LGA    V      50      V      50         20.351
LGA    I      51      I      51         20.192
LGA    G      52      G      52         22.182
LGA    Y      53      Y      53         23.970
LGA    Y      54      Y      54         25.984
LGA    D      55      D      55         29.985
LGA    Q      56      Q      56         32.375
LGA    E      57      E      57         39.119
LGA    K      58      K      58         38.929
LGA    K      59      K      59         35.624
LGA    E      60      E      60         31.947
LGA    Y      61      Y      61         30.534
LGA    V      62      V      62         31.990
LGA    K      63      K      63         30.353
LGA    K      64      K      64         28.507
LGA    E      65      E      65         29.564
LGA    L      66      L      66         24.952
LGA    M      67      M      67         28.042
LGA    E      68      E      68         23.886
LGA    P      69      P      69         21.020
LGA    L      70      L      70         15.065
LGA    E      71      E      71          9.906
LGA    I      72      I      72          8.424
LGA    L      73      L      73          2.397
LGA    S      74      S      74          1.680
LGA    L      75      L      75          0.813
LGA    S      76      S      76          1.425
LGA    G      77      G      77          3.520
LGA    N      78      N      78          2.414
LGA    V      79      V      79          2.675
LGA    S      80      S      80          2.352
LGA    M      81      M      81          4.173
LGA    K      82      K      82          5.175
LGA    D      83      D      83          4.847
LGA    S      84      S      84          3.912
LGA    K      85      K      85          3.465
LGA    P      86      P      86          5.368
LGA    F      87      F      87          3.097
LGA    C      88      C      88          3.982
LGA    H      89      H      89          3.098
LGA    I      90      I      90          3.177
LGA    H      91      H      91          2.202
LGA    V      92      V      92          4.923
LGA    L      93      L      93          4.281
LGA    L      94      L      94         10.161
LGA    G      95      G      95         10.751
LGA    K      96      K      96         11.937
LGA    D      97      D      97         12.494
LGA    G      98      G      98         13.357
LGA    E      99      E      99         14.409
LGA    V     100      V     100         11.594
LGA    Y     101      Y     101          8.951
LGA    G     102      G     102          6.562
LGA    G     103      G     103          2.575
LGA    H     104      H     104          3.855
LGA    L     105      L     105          7.568
LGA    F     106      F     106          7.080
LGA    S     107      S     107          7.901
LGA    A     108      A     108         11.568
LGA    E     109      E     109         13.385
LGA    V     110      V     110         12.198
LGA    F     111      F     111         15.075
LGA    A     112      A     112         19.647
LGA    C     113      C     113         18.557
LGA    E     114      E     114         18.364
LGA    V     115      V     115         18.022
LGA    F     116      F     116         23.950
LGA    V     117      V     117         23.107
LGA    L     118      L     118         28.539
LGA    P     119      P     119         27.066
LGA    L     120      L     120         30.444
LGA    S     121      S     121         30.344
LGA    G     122      G     122         27.818
LGA    E     123      E     123         22.812
LGA    A     124      A     124         21.310
LGA    P     125      P     125         18.881
LGA    E     126      E     126         18.703
LGA    R     127      R     127         14.686
LGA    A     128      A     128         10.345
LGA    F     129      F     129         11.556
LGA    D     130      D     130         14.592
LGA    E     131      E     131         11.573
LGA    Q     132      Q     132         13.328
LGA    T     133      T     133         11.746
LGA    G     134      G     134          7.686
LGA    L     135      L     135          7.392
LGA    F     136      F     136          9.642
LGA    L     137      L     137         12.492
LGA    W     138      W     138         17.931
LGA    L     139      L     139         24.225
LGA    E     140      E     140         26.675

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0     38    2.78    26.705    22.931     1.319

LGA_LOCAL      RMSD =  2.781  Number of atoms =   38  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.217  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 14.666  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.220619 * X  +  -0.021283 * Y  +   0.975128 * Z  +  57.102787
  Y_new =   0.906866 * X  +   0.363563 * Y  +   0.213110 * Z  +   5.436424
  Z_new =  -0.359056 * X  +   0.931327 * Y  +  -0.060908 * Z  +  16.281002 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.636103   -1.505490  [ DEG:    93.7418    -86.2582 ]
  Theta =   0.367256    2.774337  [ DEG:    21.0422    158.9578 ]
  Phi   =   1.809437   -1.332156  [ DEG:   103.6731    -76.3269 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS599_3-D1                               
REMARK     2: T0312_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS599_3-D1.T0312_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0   38   2.78  22.931    14.67
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS599_3-D1
PFRMAT TS                                                                       
TARGET T0312                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      9  CA  GLY     9      81.701  -1.884  10.771  1.00  0.00              
ATOM     10  CA  LYS    10      78.883  -4.056   9.525  1.00  0.00              
ATOM     11  CA  GLY    11      76.652  -2.914   6.716  1.00  0.00              
ATOM     12  CA  PHE    12      73.038  -1.901   7.441  1.00  0.00              
ATOM     13  CA  LEU    13      70.727  -1.043   4.707  1.00  0.00              
ATOM     14  CA  LEU    14      67.765   1.143   5.399  1.00  0.00              
ATOM     15  CA  ARG    15      64.984   1.303   2.960  1.00  0.00              
ATOM     16  CA  LEU    16      62.334   3.924   3.314  1.00  0.00              
ATOM     17  CA  ASP    17      58.887   3.524   1.814  1.00  0.00              
ATOM     18  CA  TYR    18      57.128   6.230   0.120  1.00  0.00              
ATOM     19  CA  GLY    19      56.141   8.800   2.512  1.00  0.00              
ATOM     20  CA  LYS    20      58.470   8.176   5.492  1.00  0.00              
ATOM     21  CA  ASP    21      59.407  11.703   6.353  1.00  0.00              
ATOM     22  CA  LEU    22      58.871  11.797  10.068  1.00  0.00              
ATOM     23  CA  VAL    23      60.790   8.679  10.897  1.00  0.00              
ATOM     24  CA  ARG    24      63.735   9.761   8.819  1.00  0.00              
ATOM     25  CA  GLN    25      63.902  13.262  10.152  1.00  0.00              
ATOM     26  CA  ILE    26      63.589  12.219  13.806  1.00  0.00              
ATOM     27  CA  GLU    27      66.233   9.635  13.410  1.00  0.00              
ATOM     28  CA  GLU    28      68.743  11.764  11.792  1.00  0.00              
ATOM     29  CA  PHE    29      68.520  14.519  14.290  1.00  0.00              
ATOM     30  CA  LEU    30      68.899  12.102  17.053  1.00  0.00              
ATOM     31  CA  GLU    31      71.925  10.318  15.648  1.00  0.00              
ATOM     32  CA  GLU    32      73.882  13.358  14.746  1.00  0.00              
ATOM     33  CA  LYS    33      73.581  14.919  18.046  1.00  0.00              
ATOM     34  CA  GLY    34      74.064  11.775  20.179  1.00  0.00              
ATOM     35  CA  ILE    35      70.542  12.245  21.535  1.00  0.00              
ATOM     36  CA  HIS    36      67.922   9.893  22.691  1.00  0.00              
ATOM     37  CA  ALA    37      64.699  11.241  21.165  1.00  0.00              
ATOM     38  CA  ALA    38      61.120  10.767  22.240  1.00  0.00              
ATOM     39  CA  HIS    39      58.314  11.620  19.857  1.00  0.00              
ATOM     40  CA  ILE    40      54.853  11.974  21.167  1.00  0.00              
ATOM     41  CA  SER    41      51.980  12.405  18.763  1.00  0.00              
ATOM     42  CA  ALA    42      48.547  13.154  20.084  1.00  0.00              
ATOM     43  CA  ILE    43      45.643  13.313  17.739  1.00  0.00              
ATOM     44  CA  GLY    44      42.195  14.374  19.030  1.00  0.00              
ATOM     45  CA  ALA    45      39.194  14.324  16.768  1.00  0.00              
ATOM     46  CA  VAL    46      36.131  16.347  17.814  1.00  0.00              
ATOM     47  CA  ARG    47      36.864  19.703  16.104  1.00  0.00              
ATOM     48  CA  SER    48      40.469  19.016  15.230  1.00  0.00              
ATOM     49  CA  ALA    49      43.105  19.018  17.904  1.00  0.00              
ATOM     50  CA  VAL    50      46.620  18.046  17.001  1.00  0.00              
ATOM     51  CA  ILE    51      49.280  17.720  19.677  1.00  0.00              
ATOM     52  CA  GLY    52      52.850  17.159  18.782  1.00  0.00              
ATOM     53  CA  TYR    53      55.424  16.542  21.497  1.00  0.00              
ATOM     54  CA  TYR    54      59.029  16.167  20.538  1.00  0.00              
ATOM     55  CA  ASP    55      61.564  15.348  23.048  1.00  0.00              
ATOM     56  CA  GLN    56      65.161  16.550  22.877  1.00  0.00              
ATOM     57  CA  GLU    57      65.489  19.881  21.028  1.00  0.00              
ATOM     58  CA  LYS    58      61.754  20.643  21.034  1.00  0.00              
ATOM     59  CA  LYS    59      60.849  20.727  17.397  1.00  0.00              
ATOM     60  CA  GLU    60      57.401  19.337  16.793  1.00  0.00              
ATOM     61  CA  TYR    61      54.862  20.860  19.123  1.00  0.00              
ATOM     62  CA  VAL    62      51.889  22.265  17.279  1.00  0.00              
ATOM     63  CA  LYS    63      49.163  22.651  19.834  1.00  0.00              
ATOM     64  CA  LYS    64      45.508  22.350  18.712  1.00  0.00              
ATOM     65  CA  GLU    65      42.663  22.827  21.127  1.00  0.00              
ATOM     66  CA  LEU    66      39.902  20.184  20.824  1.00  0.00              
ATOM     67  CA  MET    67      36.383  21.194  21.677  1.00  0.00              
ATOM     68  CA  GLU    68      33.818  18.515  21.330  1.00  0.00              
ATOM     69  CA  PRO    69      33.213  14.955  22.299  1.00  0.00              
ATOM     70  CA  LEU    70      36.228  13.153  21.379  1.00  0.00              
ATOM     71  CA  GLU    71      38.391  10.505  20.200  1.00  0.00              
ATOM     72  CA  ILE    72      41.865  10.517  21.408  1.00  0.00              
ATOM     73  CA  LEU    73      44.482   8.978  19.469  1.00  0.00              
ATOM     74  CA  SER    74      47.850   8.735  21.094  1.00  0.00              
ATOM     75  CA  LEU    75      50.944   7.912  19.184  1.00  0.00              
ATOM     76  CA  SER    76      54.161   7.555  21.066  1.00  0.00              
ATOM     77  CA  GLY    77      57.384   7.125  19.231  1.00  0.00              
ATOM     78  CA  ASN    78      60.519   6.139  21.042  1.00  0.00              
ATOM     79  CA  VAL    79      63.774   6.419  19.325  1.00  0.00              
ATOM     80  CA  SER    80      66.881   5.198  21.040  1.00  0.00              
ATOM     81  CA  MET    81      70.339   5.757  19.440  1.00  0.00              
ATOM     82  CA  LYS    82      72.763   2.979  20.114  1.00  0.00              
ATOM     83  CA  ASP    83      74.512   2.371  16.844  1.00  0.00              
ATOM     84  CA  SER    84      71.752   0.147  15.320  1.00  0.00              
ATOM     85  CA  LYS    85      68.725   2.247  16.082  1.00  0.00              
ATOM     86  CA  PRO    86      66.174   0.939  18.403  1.00  0.00              
ATOM     87  CA  PHE    87      62.779   2.124  17.409  1.00  0.00              
ATOM     88  CA  CYS    88      59.777   1.484  19.572  1.00  0.00              
ATOM     89  CA  HIS    89      56.374   2.624  18.470  1.00  0.00              
ATOM     90  CA  ILE    90      53.575   2.883  20.962  1.00  0.00              
ATOM     91  CA  HIS    91      50.052   3.187  19.820  1.00  0.00              
ATOM     92  CA  VAL    92      47.379   4.216  22.367  1.00  0.00              
ATOM     93  CA  LEU    93      43.766   4.537  21.332  1.00  0.00              
ATOM     94  CA  LEU    94      41.309   6.206  23.659  1.00  0.00              
ATOM     95  CA  GLY    95      37.618   6.207  22.784  1.00  0.00              
ATOM     96  CA  LYS    96      35.397   9.117  23.905  1.00  0.00              
ATOM     97  CA  ASP    97      34.049   6.877  26.694  1.00  0.00              
ATOM     98  CA  GLY    98      37.391   6.263  28.270  1.00  0.00              
ATOM     99  CA  GLU    99      38.027   2.653  27.188  1.00  0.00              
ATOM    100  CA  VAL   100      41.634   2.352  26.465  1.00  0.00              
ATOM    101  CA  TYR   101      42.879   0.394  23.555  1.00  0.00              
ATOM    102  CA  GLY   102      46.517  -0.494  23.357  1.00  0.00              
ATOM    103  CA  GLY   103      48.191  -1.160  20.074  1.00  0.00              
ATOM    104  CA  HIS   104      51.227  -3.213  20.104  1.00  0.00              
ATOM    105  CA  LEU   105      50.568  -5.056  16.794  1.00  0.00              
ATOM    106  CA  PHE   106      49.804  -1.896  14.819  1.00  0.00              
ATOM    107  CA  SER   107      52.920   0.014  16.013  1.00  0.00              
ATOM    108  CA  ALA   108      55.333  -2.793  15.414  1.00  0.00              
ATOM    109  CA  GLU   109      53.831  -3.170  11.937  1.00  0.00              
ATOM    110  CA  VAL   110      53.351   0.371  10.588  1.00  0.00              
ATOM    111  CA  PHE   111      56.581   2.134  11.615  1.00  0.00              
ATOM    112  CA  ALA   112      58.576  -0.972  10.571  1.00  0.00              
ATOM    113  CA  CYS   113      57.003  -1.418   7.094  1.00  0.00              
ATOM    114  CA  GLU   114      57.501   2.263   6.182  1.00  0.00              
ATOM    115  CA  VAL   115      61.100   1.822   7.307  1.00  0.00              
ATOM    116  CA  PHE   116      62.733  -1.375   6.105  1.00  0.00              
ATOM    117  CA  VAL   117      65.919  -2.331   7.673  1.00  0.00              
ATOM    118  CA  LEU   118      68.343  -4.862   6.086  1.00  0.00              
ATOM    119  CA  PRO   119      71.405  -5.840   8.040  1.00  0.00              
ATOM    120  CA  LEU   120      74.471  -7.153   6.330  1.00  0.00              
ATOM    121  CA  SER   121      77.353  -7.904   8.655  1.00  0.00              
ATOM    122  CA  GLY   122      75.630  -9.521  11.587  1.00  0.00              
ATOM    123  CA  GLU   123      72.592  -7.328  11.946  1.00  0.00              
ATOM    124  CA  ALA   124      69.173  -8.443  11.007  1.00  0.00              
ATOM    125  CA  PRO   125      66.597  -5.857  10.471  1.00  0.00              
ATOM    126  CA  GLU   126      63.700  -7.724   8.771  1.00  0.00              
ATOM    127  CA  ARG   127      64.349 -10.659  11.146  1.00  0.00              
ATOM    128  CA  ALA   128      64.212  -8.508  14.298  1.00  0.00              
ATOM    129  CA  PHE   129      60.951  -6.886  13.133  1.00  0.00              
ATOM    130  CA  ASP   130      59.100 -10.087  12.121  1.00  0.00              
ATOM    131  CA  GLU   131      59.247 -11.856  15.472  1.00  0.00              
ATOM    132  CA  GLN   132      55.491 -12.612  15.638  1.00  0.00              
ATOM    133  CA  THR   133      54.744  -8.969  14.809  1.00  0.00              
ATOM    134  CA  GLY   134      57.204  -7.707  17.497  1.00  0.00              
ATOM    135  CA  LEU   135      54.789  -5.679  19.342  1.00  0.00              
ATOM    136  CA  PHE   136      54.276  -5.799  23.076  1.00  0.00              
ATOM    137  CA  LEU   137      51.297  -3.679  24.203  1.00  0.00              
ATOM    138  CA  TRP   138      48.156  -5.022  25.746  1.00  0.00              
ATOM    139  CA  LEU   139      44.872  -3.442  26.258  1.00  0.00              
ATOM    140  CA  GLU   140      44.333  -4.457  29.908  1.00  0.00              
TER                                                                             
END
