
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0312TS599_4-D1
# Molecule2: number of CA atoms  132 ( 1043),  selected  132 , name T0312_D1.pdb
# PARAMETERS: T0312TS599_4-D1.T0312_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41         9 - 49          4.81    15.83
  LCS_AVERAGE:     25.09

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        19 - 37          2.00    17.01
  LONGEST_CONTINUOUS_SEGMENT:    19        20 - 38          1.92    17.16
  LONGEST_CONTINUOUS_SEGMENT:    19        21 - 39          1.80    17.46
  LONGEST_CONTINUOUS_SEGMENT:    19        22 - 40          1.96    17.58
  LONGEST_CONTINUOUS_SEGMENT:    19        23 - 41          1.96    17.66
  LCS_AVERAGE:      9.48

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        21 - 37          0.85    17.68
  LCS_AVERAGE:      5.69

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     G       9     G       9      6   12   41     3    5    7   10   17   24   28   36   42   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     K      10     K      10      7   12   41     5    8   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G      11     G      11      7   12   41     5    8   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     F      12     F      12      7   12   41     4    9   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      13     L      13      7   12   41     4    9   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      14     L      14      7   12   41     4    9   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     R      15     R      15      7   12   41     5    9   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      16     L      16      7   12   41     3    8   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     D      17     D      17      7   12   41     5    6    7   10   21   25   28   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     Y      18     Y      18      7   12   41     5    9   14   18   21   25   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G      19     G      19      6   19   41     5    6   11   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     K      20     K      20      6   19   41     5    6    6   12   18   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     D      21     D      21     17   19   41     5   16   16   16   17   26   30   34   40   45   50   53   56   61   67   72   76   78   81   84 
LCS_GDT     L      22     L      22     17   19   41     8   16   16   16   17   19   21   30   36   42   46   52   56   61   67   72   76   78   81   84 
LCS_GDT     V      23     V      23     17   19   41    11   16   16   16   17   20   30   33   39   47   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     R      24     R      24     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     Q      25     Q      25     17   19   41    11   16   16   16   20   26   30   35   42   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     I      26     I      26     17   19   41    11   16   16   16   18   26   30   38   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     E      27     E      27     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     E      28     E      28     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     F      29     F      29     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      30     L      30     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     E      31     E      31     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     E      32     E      32     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     K      33     K      33     17   19   41    11   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G      34     G      34     17   19   41     6   16   16   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     I      35     I      35     17   19   41     6   16   16   16   18   26   30   35   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     H      36     H      36     17   19   41     3   16   16   16   17   19   25   32   36   42   49   53   56   66   67   72   76   78   81   84 
LCS_GDT     A      37     A      37     17   19   41     3    5    9   15   17   19   21   25   34   41   46   52   56   66   67   72   76   78   81   84 
LCS_GDT     A      38     A      38      7   19   41     4    7    7    9   13   17   20   23   30   41   45   52   56   66   67   72   76   78   81   84 
LCS_GDT     H      39     H      39      7   19   41     4    7    9   13   16   19   21   23   28   32   43   52   56   66   67   72   76   78   81   84 
LCS_GDT     I      40     I      40      7   19   41     4    7    9   13   16   19   21   23   28   41   44   52   56   66   67   72   76   78   81   84 
LCS_GDT     S      41     S      41      7   19   41     4    7    9   13   17   19   21   23   28   40   44   52   56   66   67   72   76   78   81   84 
LCS_GDT     A      42     A      42      7   18   41     4    7    7   12   17   19   21   23   32   41   44   52   56   66   67   72   76   78   81   84 
LCS_GDT     I      43     I      43      7   18   41     3    7    7   12   17   19   21   30   35   41   45   52   56   66   67   72   76   78   81   84 
LCS_GDT     G      44     G      44      7    9   41     3    7    7    8    8   11   20   30   35   42   46   52   56   66   67   72   76   78   81   83 
LCS_GDT     A      45     A      45      4   11   41     3    3    5    6    9   11   19   25   35   42   46   52   56   66   67   72   76   78   81   84 
LCS_GDT     V      46     V      46      6   13   41     3    5   10   13   13   16   19   20   22   23   28   33   54   59   65   72   76   78   81   84 
LCS_GDT     R      47     R      47      6   13   41     3    5    9   13   13   16   19   20   33   37   39   48   56   61   66   71   76   78   81   84 
LCS_GDT     S      48     S      48      6   13   41     3    5   10   13   13   16   19   20   22   30   42   50   56   61   65   69   74   78   81   84 
LCS_GDT     A      49     A      49      6   13   41     4    6    9   13   13   16   19   20   22   35   42   50   56   61   66   70   76   78   81   84 
LCS_GDT     V      50     V      50      6   13   39     4    6    9   13   13   16   19   20   22   23   24   26   35   42   52   64   69   73   81   83 
LCS_GDT     I      51     I      51      6   13   33     4    6   10   13   13   16   19   20   22   23   24   28   32   44   53   64   71   76   81   84 
LCS_GDT     G      52     G      52      6   13   28     3    6   10   13   13   16   19   20   22   23   24   25   27   28   31   36   44   51   58   68 
LCS_GDT     Y      53     Y      53      6   13   28     4    6   10   13   13   16   19   20   22   23   24   25   27   28   31   33   35   37   41   54 
LCS_GDT     Y      54     Y      54      6   13   28     4    6   10   13   13   16   19   20   22   23   24   25   27   28   31   33   35   38   41   47 
LCS_GDT     D      55     D      55      6   13   28     4    4    9   10   12   15   19   20   22   23   24   25   27   28   30   31   34   37   39   41 
LCS_GDT     Q      56     Q      56      6   13   28     4    6   10   13   13   16   19   20   22   23   24   25   27   28   30   31   34   37   39   43 
LCS_GDT     E      57     E      57      3   13   28     3    6   10   13   13   16   19   20   22   23   24   25   27   28   30   31   34   37   39   41 
LCS_GDT     K      58     K      58      3   13   28     3    3   10   13   13   16   19   20   22   23   24   25   27   28   30   31   34   36   41   43 
LCS_GDT     K      59     K      59      3   12   28     3    4    7   10   12   13   15   18   22   23   24   25   27   28   30   31   35   40   44   46 
LCS_GDT     E      60     E      60      3   12   28     3    4    6   11   12   15   18   19   22   23   24   25   27   28   30   31   35   40   44   46 
LCS_GDT     Y      61     Y      61      5   12   28     3    4    7    8   12   13   15   17   22   23   24   25   27   28   31   33   35   39   44   46 
LCS_GDT     V      62     V      62      7   12   28     3    5    7   10   12   16   18   19   22   23   24   25   27   28   31   33   35   39   44   46 
LCS_GDT     K      63     K      63      7   12   28     6    6    7   10   12   13   15   19   22   23   24   25   27   28   31   33   35   38   42   46 
LCS_GDT     K      64     K      64      7   12   28     6    6    7   10   13   16   19   20   22   23   24   25   27   28   31   33   35   39   44   46 
LCS_GDT     E      65     E      65      7   12   28     6    6    7   10   12   16   18   19   22   23   24   25   27   28   30   32   34   39   43   51 
LCS_GDT     L      66     L      66      7   12   28     6    6    7   11   13   16   19   20   22   23   24   25   28   35   49   57   57   71   75   80 
LCS_GDT     M      67     M      67      7   12   28     6    6   10   13   13   16   19   20   22   23   24   26   32   42   49   58   64   71   75   83 
LCS_GDT     E      68     E      68      7   12   40     6    6    7   10   11   14   19   20   22   29   41   48   55   60   65   69   74   77   81   84 
LCS_GDT     P      69     P      69      7   12   40     3    6    7    8   11   13   14   25   33   37   43   50   56   61   66   71   76   78   81   84 
LCS_GDT     L      70     L      70      7   12   40     3    4    6    9   15   20   24   32   41   48   50   53   56   62   67   72   76   78   81   84 
LCS_GDT     E      71     E      71      7    9   40     3    8   14   18   21   25   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     I      72     I      72      7    9   40     3    8   14   18   21   25   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      73     L      73      7   13   40     4    6    8   16   20   26   32   35   41   47   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     S      74     S      74      7   13   40     4    6   10   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      75     L      75      7   13   40     4    8   11   16   20   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     S      76     S      76      7   13   40     4    8   11   16   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G      77     G      77      7   13   40     3    8   11   14   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     N      78     N      78      7   13   40     3    6   13   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     V      79     V      79      7   13   40     3    6   10   16   20   25   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     S      80     S      80      6   13   40     3    5   10   16   20   23   28   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     M      81     M      81      6   13   40     3    5    9   16   17   22   28   34   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     K      82     K      82      6   13   40     3    5    6    9   16   20   22   28   31   36   41   51   56   66   67   72   76   77   79   81 
LCS_GDT     D      83     D      83      6   13   40     3    5    6    9   11   15   20   23   27   38   41   48   56   66   67   72   76   77   79   81 
LCS_GDT     S      84     S      84      5   14   40     3    5   10   16   20   22   26   31   34   38   43   51   56   66   67   72   76   78   81   84 
LCS_GDT     K      85     K      85      8   14   40     4    8    9   16   20   22   26   30   34   38   43   51   56   66   67   72   76   78   81   84 
LCS_GDT     P      86     P      86      8   14   40     4    8    9   12   13   20   24   28   33   38   42   43   55   59   62   68   76   78   81   84 
LCS_GDT     F      87     F      87      8   14   40     4    8   10   16   20   22   28   31   34   44   49   53   56   66   67   72   76   78   81   84 
LCS_GDT     C      88     C      88      8   14   40     4    8    9   13   20   22   26   30   34   38   44   51   56   66   67   72   76   78   81   84 
LCS_GDT     H      89     H      89      8   14   40     4    9   14   18   21   25   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     I      90     I      90      8   14   40     4    8   10   16   20   25   31   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     H      91     H      91      8   14   40     5    8   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     V      92     V      92      8   14   40     4    9   14   18   21   25   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      93     L      93      7   14   40     5    8   14   18   21   26   32   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     L      94     L      94      7   14   40     4    6    7   15   20   25   31   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G      95     G      95      7   14   40     4    9   13   18   21   25   31   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     K      96     K      96      4   14   40     3    9   13   18   21   25   31   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     D      97     D      97      5   14   40     3    9   13   18   21   25   31   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G      98     G      98      6   12   40     3    4    7    9   14   19   23   28   31   38   42   52   56   62   66   72   76   78   81   84 
LCS_GDT     E      99     E      99      6   12   40     3    5    7   11   16   19   24   28   31   37   42   46   56   62   66   72   76   78   81   84 
LCS_GDT     V     100     V     100      6   12   40     3    5    7   11   17   21   24   29   32   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     Y     101     Y     101      6   12   40     3    5    9   16   20   23   28   36   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G     102     G     102      6   12   40     3    5    9   16   20   23   30   39   43   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     G     103     G     103      6   11   40     3    5    7   11   16   20   28   31   42   48   50   53   56   66   67   72   76   78   81   84 
LCS_GDT     H     104     H     104      3   10   40     3    3    5    8   13   17   22   29   33   38   42   50   54   66   67   72   76   78   81   84 
LCS_GDT     L     105     L     105      3    9   40     3    3    4    5    9   10   10   13   19   22   25   28   31   35   36   42   49   58   61   72 
LCS_GDT     F     106     F     106      3    4   40     3    3    4    8   13   16   21   24   30   32   34   38   41   44   51   53   57   69   73   77 
LCS_GDT     S     107     S     107      3    4   40     3    4    7   12   17   21   24   28   31   32   34   38   42   45   59   63   63   65   73   77 
LCS_GDT     A     108     A     108      3    4   40     3    3    4    6    9   13   18   20   24   28   29   31   33   34   37   41   43   45   46   48 
LCS_GDT     E     109     E     109      3    4   40     3    3    4    6    9   11   16   19   24   28   29   31   33   34   35   36   40   44   45   48 
LCS_GDT     V     110     V     110      3    4   40     3    3    3    6    9   10   15   16   22   25   29   30   33   34   34   36   40   43   45   48 
LCS_GDT     F     111     F     111      3    4   17     3    3    3    3    4    6    8   10   12   13   14   15   17   18   25   27   27   33   35   36 
LCS_GDT     A     112     A     112      3    4   17     3    3    3    3    4    6    8   10   12   13   14   15   17   18   20   22   23   24   25   27 
LCS_GDT     C     113     C     113      5   12   17     3    4    6   10   11   11   11   13   13   14   15   15   17   18   20   22   23   25   26   28 
LCS_GDT     E     114     E     114      6   12   17     3    5    6   10   11   11   11   13   13   14   15   15   17   20   23   25   28   31   31   36 
LCS_GDT     V     115     V     115      8   12   17     3    6    8   10   11   11   11   13   13   14   15   15   20   22   23   28   31   34   36   40 
LCS_GDT     F     116     F     116      8   12   17     3    6    8   10   11   11   11   13   13   15   16   18   25   28   31   33   35   37   38   41 
LCS_GDT     V     117     V     117      8   12   17     3    6    8   10   11   11   11   13   13   15   18   21   25   28   31   33   35   38   40   42 
LCS_GDT     L     118     L     118      8   12   17     3    6    8   10   11   11   11   13   13   14   15   15   18   24   27   30   33   37   39   41 
LCS_GDT     P     119     P     119      8   12   17     4    6    8   10   11   11   11   13   13   14   15   15   17   18   21   23   23   26   27   30 
LCS_GDT     L     120     L     120      8   12   17     4    6    8   10   11   11   11   13   13   14   15   15   17   18   21   23   24   26   28   31 
LCS_GDT     S     121     S     121      8   12   17     4    6    8   10   11   11   11   13   13   14   15   15   17   18   21   23   24   26   27   27 
LCS_GDT     G     122     G     122      8   12   17     5    5    8   10   11   11   11   13   13   14   15   15   18   18   21   23   24   26   28   30 
LCS_GDT     E     123     E     123      5   12   17     5    5    5    7    9   10   11   13   13   14   15   15   18   18   21   23   24   26   27   30 
LCS_GDT     A     124     A     124      5   12   17     5    5    7    9   11   11   11   13   13   19   22   24   25   27   27   28   29   34   34   36 
LCS_GDT     P     125     P     125      5    8   17     5    5    5    6    7    8   10   19   21   21   23   24   25   27   27   28   29   34   35   37 
LCS_GDT     E     126     E     126      5    8   17     5    5    5    7    7    8    9   10   12   14   15   15   18   23   27   28   29   34   35   36 
LCS_GDT     R     127     R     127      3    4   17     3    3    4    4    6    6   10   13   13   14   15   15   18   19   25   28   29   32   33   39 
LCS_GDT     A     128     A     128      7    7   17     3    3    6    7    7    7    8    9    9   10   10   13   15   18   25   28   29   32   37   39 
LCS_GDT     F     129     F     129      7    7   12     3    6    6    7    7    7    8    9    9   10   23   23   31   36   42   50   54   61   72   77 
LCS_GDT     D     130     D     130      7    7   12     3    6    6    7    7    7    8    9    9   11   23   25   31   36   42   50   54   60   68   75 
LCS_GDT     E     131     E     131      7    7   12     3    6    6    7    7    7    8    9   13   17   23   30   38   46   56   63   68   73   77   83 
LCS_GDT     Q     132     Q     132      7    7   12     3    6    6    7    7    8    9   10   11   17   20   27   41   46   52   62   68   73   77   84 
LCS_GDT     T     133     T     133      7    7   12     3    6    6    7    8    8    9   17   18   26   31   36   42   46   52   62   70   74   80   84 
LCS_GDT     G     134     G     134      7    7   12     3    6    6    7   13   16   21   25   33   37   44   50   56   61   65   70   74   78   81   84 
LCS_GDT     L     135     L     135      5    7   12     3    4    5   10   12   19   21   25   33   37   39   48   56   61   65   68   74   78   81   84 
LCS_GDT     F     136     F     136      5    7   12     3    4    5    7   16   19   21   25   33   37   42   50   56   61   65   70   74   78   81   84 
LCS_GDT     L     137     L     137      5    7   12     3    4    7   12   16   19   21   25   33   37   40   48   56   61   65   68   74   77   81   84 
LCS_GDT     W     138     W     138      5    7   12     3    4    5   11   12   19   21   23   33   37   39   39   45   59   65   68   74   76   81   84 
LCS_GDT     L     139     L     139      3    7   12     3    3    7    8   13   16   19   20   27   37   39   39   42   49   65   68   74   76   81   84 
LCS_GDT     E     140     E     140      3    3   12     3    8    9    9   13   16   19   23   25   26   29   36   42   46   48   51   56   62   67   73 
LCS_AVERAGE  LCS_A:  13.42  (   5.69    9.48   25.09 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     16     16     18     21     26     32     39     43     48     50     53     56     66     67     72     76     78     81     84 
GDT PERCENT_CA   8.33  12.12  12.12  13.64  15.91  19.70  24.24  29.55  32.58  36.36  37.88  40.15  42.42  50.00  50.76  54.55  57.58  59.09  61.36  63.64
GDT RMS_LOCAL    0.26   0.45   0.45   1.34   1.60   2.15   2.64   3.04   3.21   3.47   3.54   3.73   4.11   4.81   4.85   5.09   5.39   5.61   5.86   6.21
GDT RMS_ALL_CA  17.44  17.71  17.71  15.50  15.59  17.18  16.31  15.92  15.97  15.88  15.92  15.92  15.87  15.96  15.92  15.88  15.72  15.42  15.33  15.25

#      Molecule1      Molecule2       DISTANCE
LGA    G       9      G       9          4.914
LGA    K      10      K      10          2.474
LGA    G      11      G      11          2.612
LGA    F      12      F      12          2.714
LGA    L      13      L      13          2.875
LGA    L      14      L      14          2.787
LGA    R      15      R      15          1.974
LGA    L      16      L      16          2.587
LGA    D      17      D      17          3.889
LGA    Y      18      Y      18          2.901
LGA    G      19      G      19          1.437
LGA    K      20      K      20          2.593
LGA    D      21      D      21          5.437
LGA    L      22      L      22          6.720
LGA    V      23      V      23          5.186
LGA    R      24      R      24          3.871
LGA    Q      25      Q      25          4.719
LGA    I      26      I      26          4.228
LGA    E      27      E      27          2.993
LGA    E      28      E      28          3.136
LGA    F      29      F      29          3.438
LGA    L      30      L      30          3.149
LGA    E      31      E      31          3.143
LGA    E      32      E      32          3.200
LGA    K      33      K      33          2.940
LGA    G      34      G      34          3.625
LGA    I      35      I      35          4.176
LGA    H      36      H      36          6.103
LGA    A      37      A      37          7.109
LGA    A      38      A      38          7.512
LGA    H      39      H      39          8.902
LGA    I      40      I      40          8.450
LGA    S      41      S      41          9.191
LGA    A      42      A      42          8.801
LGA    I      43      I      43          9.116
LGA    G      44      G      44          8.538
LGA    A      45      A      45          7.758
LGA    V      46      V      46          8.283
LGA    R      47      R      47          8.434
LGA    S      48      S      48         10.539
LGA    A      49      A      49          9.849
LGA    V      50      V      50         13.868
LGA    I      51      I      51         12.195
LGA    G      52      G      52         16.383
LGA    Y      53      Y      53         17.573
LGA    Y      54      Y      54         19.959
LGA    D      55      D      55         23.629
LGA    Q      56      Q      56         22.706
LGA    E      57      E      57         29.051
LGA    K      58      K      58         29.945
LGA    K      59      K      59         30.403
LGA    E      60      E      60         29.174
LGA    Y      61      Y      61         27.748
LGA    V      62      V      62         27.252
LGA    K      63      K      63         27.079
LGA    K      64      K      64         23.735
LGA    E      65      E      65         23.634
LGA    L      66      L      66         18.047
LGA    M      67      M      67         18.269
LGA    E      68      E      68         12.488
LGA    P      69      P      69          8.781
LGA    L      70      L      70          5.887
LGA    E      71      E      71          2.374
LGA    I      72      I      72          2.185
LGA    L      73      L      73          5.194
LGA    S      74      S      74          3.930
LGA    L      75      L      75          3.899
LGA    S      76      S      76          3.289
LGA    G      77      G      77          3.674
LGA    N      78      N      78          2.570
LGA    V      79      V      79          3.348
LGA    S      80      S      80          3.775
LGA    M      81      M      81          4.502
LGA    K      82      K      82          8.627
LGA    D      83      D      83          9.410
LGA    S      84      S      84          9.043
LGA    K      85      K      85          8.713
LGA    P      86      P      86         10.056
LGA    F      87      F      87          5.991
LGA    C      88      C      88          6.799
LGA    H      89      H      89          3.033
LGA    I      90      I      90          3.506
LGA    H      91      H      91          2.649
LGA    V      92      V      92          1.854
LGA    L      93      L      93          1.668
LGA    L      94      L      94          3.696
LGA    G      95      G      95          3.151
LGA    K      96      K      96          2.660
LGA    D      97      D      97          2.910
LGA    G      98      G      98          7.458
LGA    E      99      E      99          7.847
LGA    V     100      V     100          6.125
LGA    Y     101      Y     101          4.958
LGA    G     102      G     102          3.906
LGA    G     103      G     103          4.727
LGA    H     104      H     104          8.254
LGA    L     105      L     105         13.939
LGA    F     106      F     106         13.303
LGA    S     107      S     107         13.770
LGA    A     108      A     108         18.989
LGA    E     109      E     109         24.277
LGA    V     110      V     110         24.511
LGA    F     111      F     111         26.794
LGA    A     112      A     112         30.367
LGA    C     113      C     113         28.518
LGA    E     114      E     114         25.449
LGA    V     115      V     115         21.680
LGA    F     116      F     116         21.113
LGA    V     117      V     117         20.251
LGA    L     118      L     118         22.944
LGA    P     119      P     119         25.115
LGA    L     120      L     120         30.008
LGA    S     121      S     121         35.860
LGA    G     122      G     122         39.721
LGA    E     123      E     123         38.763
LGA    A     124      A     124         35.296
LGA    P     125      P     125         29.344
LGA    E     126      E     126         29.960
LGA    R     127      R     127         29.044
LGA    A     128      A     128         27.288
LGA    F     129      F     129         21.751
LGA    D     130      D     130         22.942
LGA    E     131      E     131         20.315
LGA    Q     132      Q     132         19.367
LGA    T     133      T     133         16.145
LGA    G     134      G     134         11.863
LGA    L     135      L     135         10.983
LGA    F     136      F     136         10.772
LGA    L     137      L     137         11.771
LGA    W     138      W     138         13.656
LGA    L     139      L     139         14.410
LGA    E     140      E     140         20.683

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0     39    3.04    27.462    22.685     1.242

LGA_LOCAL      RMSD =  3.040  Number of atoms =   39  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 15.938  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 14.825  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.212451 * X  +   0.791188 * Y  +  -0.573487 * Z  +  54.381561
  Y_new =  -0.212506 * X  +  -0.535430 * Y  +  -0.817408 * Z  +   5.238080
  Z_new =  -0.953785 * X  +   0.295528 * Y  +   0.054380 * Z  +  16.453760 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.388824   -1.752769  [ DEG:    79.5737   -100.4263 ]
  Theta =   1.265590    1.876002  [ DEG:    72.5130    107.4870 ]
  Phi   =  -0.785528    2.356064  [ DEG:   -45.0075    134.9925 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS599_4-D1                               
REMARK     2: T0312_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS599_4-D1.T0312_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0   39   3.04  22.685    14.83
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS599_4-D1
PFRMAT TS                                                                       
TARGET T0312                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      9  CA  GLY     9      65.334  16.149  27.081  1.00  0.00              
ATOM     10  CA  LYS    10      65.327  18.853  24.468  1.00  0.00              
ATOM     11  CA  GLY    11      62.334  18.761  22.191  1.00  0.00              
ATOM     12  CA  PHE    12      62.671  18.979  18.418  1.00  0.00              
ATOM     13  CA  LEU    13      59.573  19.174  16.318  1.00  0.00              
ATOM     14  CA  LEU    14      59.623  17.908  12.772  1.00  0.00              
ATOM     15  CA  ARG    15      56.718  18.536  10.438  1.00  0.00              
ATOM     16  CA  LEU    16      56.307  16.396   7.375  1.00  0.00              
ATOM     17  CA  ASP    17      53.694  17.017   4.711  1.00  0.00              
ATOM     18  CA  TYR    18      52.389  13.998   2.851  1.00  0.00              
ATOM     19  CA  GLY    19      54.961  12.015   0.794  1.00  0.00              
ATOM     20  CA  LYS    20      57.910  13.357   2.690  1.00  0.00              
ATOM     21  CA  ASP    21      60.881  12.257   4.799  1.00  0.00              
ATOM     22  CA  LEU    22      60.499  14.481   7.839  1.00  0.00              
ATOM     23  CA  VAL    23      60.890  11.712  10.433  1.00  0.00              
ATOM     24  CA  ARG    24      64.310  10.780   9.118  1.00  0.00              
ATOM     25  CA  GLN    25      65.423  14.442   9.312  1.00  0.00              
ATOM     26  CA  ILE    26      64.078  14.898  12.827  1.00  0.00              
ATOM     27  CA  GLU    27      65.860  11.727  14.013  1.00  0.00              
ATOM     28  CA  GLU    28      69.040  12.966  12.499  1.00  0.00              
ATOM     29  CA  PHE    29      68.671  16.373  14.144  1.00  0.00              
ATOM     30  CA  LEU    30      67.996  15.001  17.572  1.00  0.00              
ATOM     31  CA  GLU    31      70.939  12.719  17.352  1.00  0.00              
ATOM     32  CA  GLU    32      73.320  15.441  16.109  1.00  0.00              
ATOM     33  CA  LYS    33      72.504  17.827  18.869  1.00  0.00              
ATOM     34  CA  GLY    34      72.567  15.135  21.594  1.00  0.00              
ATOM     35  CA  ILE    35      68.945  15.831  22.594  1.00  0.00              
ATOM     36  CA  HIS    36      66.556  13.390  23.897  1.00  0.00              
ATOM     37  CA  ALA    37      63.224  13.871  22.241  1.00  0.00              
ATOM     38  CA  ALA    38      62.077  14.246  18.647  1.00  0.00              
ATOM     39  CA  HIS    39      58.416  14.982  17.783  1.00  0.00              
ATOM     40  CA  ILE    40      57.273  14.119  14.316  1.00  0.00              
ATOM     41  CA  SER    41      54.113  15.513  12.867  1.00  0.00              
ATOM     42  CA  ALA    42      52.980  14.132   9.563  1.00  0.00              
ATOM     43  CA  ILE    43      50.069  15.773   7.803  1.00  0.00              
ATOM     44  CA  GLY    44      48.510  14.077   4.811  1.00  0.00              
ATOM     45  CA  ALA    45      45.625  15.518   3.066  1.00  0.00              
ATOM     46  CA  VAL    46      43.669  12.652   1.593  1.00  0.00              
ATOM     47  CA  ARG    47      40.308  13.152   3.380  1.00  0.00              
ATOM     48  CA  SER    48      42.187  14.151   6.523  1.00  0.00              
ATOM     49  CA  ALA    49      45.111  11.961   7.697  1.00  0.00              
ATOM     50  CA  VAL    50      47.130  13.153  10.626  1.00  0.00              
ATOM     51  CA  ILE    51      50.087  11.161  11.761  1.00  0.00              
ATOM     52  CA  GLY    52      51.648  11.941  15.063  1.00  0.00              
ATOM     53  CA  TYR    53      55.038  10.389  16.028  1.00  0.00              
ATOM     54  CA  TYR    54      56.211  10.701  19.554  1.00  0.00              
ATOM     55  CA  ASP    55      59.595   9.504  20.789  1.00  0.00              
ATOM     56  CA  GLN    56      59.613   8.283  24.332  1.00  0.00              
ATOM     57  CA  GLU    57      59.474  10.807  27.110  1.00  0.00              
ATOM     58  CA  LYS    58      55.846  10.912  28.344  1.00  0.00              
ATOM     59  CA  LYS    59      55.137  14.650  28.287  1.00  0.00              
ATOM     60  CA  GLU    60      52.134  14.748  26.025  1.00  0.00              
ATOM     61  CA  TYR    61      52.601  17.144  23.041  1.00  0.00              
ATOM     62  CA  VAL    62      49.308  16.458  21.356  1.00  0.00              
ATOM     63  CA  LYS    63      47.520  19.172  19.478  1.00  0.00              
ATOM     64  CA  LYS    64      46.320  18.240  16.067  1.00  0.00              
ATOM     65  CA  GLU    65      44.706  20.153  13.293  1.00  0.00              
ATOM     66  CA  LEU    66      42.583  18.034  10.887  1.00  0.00              
ATOM     67  CA  MET    67      40.902  19.591   7.902  1.00  0.00              
ATOM     68  CA  GLU    68      38.880  16.829   6.371  1.00  0.00              
ATOM     69  CA  PRO    69      37.144  13.839   8.046  1.00  0.00              
ATOM     70  CA  LEU    70      39.754  12.912  10.584  1.00  0.00              
ATOM     71  CA  GLU    71      41.863   9.960  11.114  1.00  0.00              
ATOM     72  CA  ILE    72      44.517  10.285  13.682  1.00  0.00              
ATOM     73  CA  LEU    73      47.276   7.981  13.789  1.00  0.00              
ATOM     74  CA  SER    74      49.495   8.131  16.729  1.00  0.00              
ATOM     75  CA  LEU    75      52.823   6.362  16.688  1.00  0.00              
ATOM     76  CA  SER    76      54.752   6.035  19.849  1.00  0.00              
ATOM     77  CA  GLY    77      58.317   4.904  19.633  1.00  0.00              
ATOM     78  CA  ASN    78      60.154   3.909  22.731  1.00  0.00              
ATOM     79  CA  VAL    79      63.738   3.207  22.645  1.00  0.00              
ATOM     80  CA  SER    80      65.314   1.555  25.632  1.00  0.00              
ATOM     81  CA  MET    81      68.946   0.449  25.707  1.00  0.00              
ATOM     82  CA  LYS    82      69.552  -2.701  27.689  1.00  0.00              
ATOM     83  CA  ASP    83      72.603  -4.240  26.101  1.00  0.00              
ATOM     84  CA  SER    84      70.884  -5.776  23.120  1.00  0.00              
ATOM     85  CA  LYS    85      68.921  -2.882  21.756  1.00  0.00              
ATOM     86  CA  PRO    86      65.494  -2.424  23.197  1.00  0.00              
ATOM     87  CA  PHE    87      63.010  -1.068  20.843  1.00  0.00              
ATOM     88  CA  CYS    88      59.385  -0.644  21.729  1.00  0.00              
ATOM     89  CA  HIS    89      56.907   0.478  19.072  1.00  0.00              
ATOM     90  CA  ILE    90      53.461   1.570  20.050  1.00  0.00              
ATOM     91  CA  HIS    91      50.771   2.098  17.485  1.00  0.00              
ATOM     92  CA  VAL    92      47.705   4.113  18.534  1.00  0.00              
ATOM     93  CA  LEU    93      44.702   4.533  16.230  1.00  0.00              
ATOM     94  CA  LEU    94      42.372   7.415  16.749  1.00  0.00              
ATOM     95  CA  GLY    95      39.071   7.626  14.862  1.00  0.00              
ATOM     96  CA  LYS    96      37.588  11.031  13.891  1.00  0.00              
ATOM     97  CA  ASP    97      35.176  10.950  16.797  1.00  0.00              
ATOM     98  CA  GLY    98      37.936  10.535  19.424  1.00  0.00              
ATOM     99  CA  GLU    99      37.517   6.904  20.173  1.00  0.00              
ATOM    100  CA  VAL   100      40.819   5.404  20.765  1.00  0.00              
ATOM    101  CA  TYR   101      41.519   2.024  19.438  1.00  0.00              
ATOM    102  CA  GLY   102      44.529   0.021  20.714  1.00  0.00              
ATOM    103  CA  GLY   103      45.273  -3.506  19.362  1.00  0.00              
ATOM    104  CA  HIS   104      47.209  -5.141  21.986  1.00  0.00              
ATOM    105  CA  LEU   105      46.886  -8.796  21.138  1.00  0.00              
ATOM    106  CA  PHE   106      47.870  -8.712  17.444  1.00  0.00              
ATOM    107  CA  SER   107      50.903  -6.520  17.952  1.00  0.00              
ATOM    108  CA  ALA   108      52.623  -8.007  21.058  1.00  0.00              
ATOM    109  CA  GLU   109      52.338 -11.393  19.322  1.00  0.00              
ATOM    110  CA  VAL   110      53.885 -10.814  15.830  1.00  0.00              
ATOM    111  CA  PHE   111      57.163  -9.013  16.724  1.00  0.00              
ATOM    112  CA  ALA   112      58.395 -10.222  19.991  1.00  0.00              
ATOM    113  CA  CYS   113      61.985  -9.445  20.804  1.00  0.00              
ATOM    114  CA  GLU   114      61.381  -5.827  19.799  1.00  0.00              
ATOM    115  CA  VAL   115      57.963  -5.261  21.290  1.00  0.00              
ATOM    116  CA  PHE   116      55.396  -4.305  18.870  1.00  0.00              
ATOM    117  CA  VAL   117      51.995  -3.118  20.000  1.00  0.00              
ATOM    118  CA  LEU   118      49.501  -2.535  17.174  1.00  0.00              
ATOM    119  CA  PRO   119      46.484  -0.334  16.915  1.00  0.00              
ATOM    120  CA  LEU   120      43.446  -2.320  15.677  1.00  0.00              
ATOM    121  CA  SER   121      40.367  -0.737  14.514  1.00  0.00              
ATOM    122  CA  GLY   122      37.562  -3.180  15.070  1.00  0.00              
ATOM    123  CA  GLU   123      39.439  -6.471  14.413  1.00  0.00              
ATOM    124  CA  ALA   124      39.723  -9.130  17.097  1.00  0.00              
ATOM    125  CA  PRO   125      43.456  -9.668  17.766  1.00  0.00              
ATOM    126  CA  GLU   126      43.765 -13.371  17.050  1.00  0.00              
ATOM    127  CA  ARG   127      41.719 -12.861  13.835  1.00  0.00              
ATOM    128  CA  ALA   128      43.704  -9.961  12.530  1.00  0.00              
ATOM    129  CA  PHE   129      47.172 -11.514  12.953  1.00  0.00              
ATOM    130  CA  ASP   130      46.621 -15.078  11.705  1.00  0.00              
ATOM    131  CA  GLU   131      46.490 -16.954  14.952  1.00  0.00              
ATOM    132  CA  GLN   132      48.408 -19.943  13.695  1.00  0.00              
ATOM    133  CA  THR   133      51.338 -17.965  12.170  1.00  0.00              
ATOM    134  CA  GLY   134      51.392 -15.807  15.228  1.00  0.00              
ATOM    135  CA  LEU   135      54.799 -16.460  16.609  1.00  0.00              
ATOM    136  CA  PHE   136      56.406 -13.382  18.018  1.00  0.00              
ATOM    137  CA  LEU   137      60.207 -13.238  17.713  1.00  0.00              
ATOM    138  CA  TRP   138      61.700  -9.926  16.691  1.00  0.00              
ATOM    139  CA  LEU   139      65.501 -10.298  16.603  1.00  0.00              
ATOM    140  CA  GLU   140      65.384 -13.691  14.891  1.00  0.00              
TER                                                                             
END
