
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  132 (  132),  selected  132 , name T0312TS599_5-D1
# Molecule2: number of CA atoms  132 ( 1043),  selected  132 , name T0312_D1.pdb
# PARAMETERS: T0312TS599_5-D1.T0312_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43         9 - 51          4.86    17.69
  LCS_AVERAGE:     24.94

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        21 - 39          1.84    19.66
  LCS_AVERAGE:      9.28

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        21 - 37          0.68    20.51
  LCS_AVERAGE:      6.00

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     G       9     G       9      5   12   43     3    4    7   10   11   15   19   32   33   39   43   51   54   61   65   66   68   70   72   76 
LCS_GDT     K      10     K      10      7   12   43     4    7   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G      11     G      11      7   12   43     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     F      12     F      12      7   12   43     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     L      13     L      13      7   12   43     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     L      14     L      14      7   12   43     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     R      15     R      15      7   12   43     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     L      16     L      16      7   12   43     4    7    9   11   14   21   28   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     D      17     D      17      7   12   43     4    6    7   10   13   15   18   26   34   39   47   52   59   61   65   66   68   70   72   75 
LCS_GDT     Y      18     Y      18      5   12   43     4    8   10   12   17   24   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G      19     G      19      5   12   43     4    4    8   12   19   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     K      20     K      20      5   18   43     4    4    6    8   15   21   28   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     D      21     D      21     17   19   43    16   16   16   17   17   18   21   26   33   37   44   51   54   61   63   66   68   70   72   73 
LCS_GDT     L      22     L      22     17   19   43    16   16   16   17   17   18   19   22   24   27   31   34   41   52   61   64   67   70   71   71 
LCS_GDT     V      23     V      23     17   19   43    16   16   16   17   17   18   21   24   25   29   37   50   54   60   63   66   68   70   72   73 
LCS_GDT     R      24     R      24     17   19   43    16   16   16   17   17   18   23   32   36   41   49   52   59   61   65   66   68   70   72   74 
LCS_GDT     Q      25     Q      25     17   19   43    16   16   16   17   17   18   23   32   36   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     I      26     I      26     17   19   43    16   16   16   17   17   18   23   32   36   40   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     E      27     E      27     17   19   43    16   16   16   17   17   21   28   33   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     E      28     E      28     17   19   43    16   16   16   17   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     F      29     F      29     17   19   43    16   16   16   17   17   19   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     L      30     L      30     17   19   43    16   16   16   17   19   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     E      31     E      31     17   19   43    16   16   16   17   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     E      32     E      32     17   19   43    16   16   16   17   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     K      33     K      33     17   19   43    16   16   16   17   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G      34     G      34     17   19   43    16   16   16   17   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     I      35     I      35     17   19   43    16   16   16   17   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     H      36     H      36     17   19   43    16   16   16   17   17   17   22   31   36   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     A      37     A      37     17   19   43     3    9   16   17   17   18   19   23   29   38   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     A      38     A      38      7   19   43     5    5    8   10   14   18   19   23   29   36   45   52   59   61   65   66   68   70   72   76 
LCS_GDT     H      39     H      39      7   19   43     5    6    8   10   14   18   19   23   28   34   44   50   59   61   65   66   68   70   72   76 
LCS_GDT     I      40     I      40      7   14   43     5    6    8   10   13   17   19   24   29   36   45   51   59   61   65   66   68   70   72   76 
LCS_GDT     S      41     S      41      7   14   43     5    6    8    9   13   16   19   24   29   34   44   50   59   61   65   66   68   70   72   76 
LCS_GDT     A      42     A      42      7   11   43     5    6    8    9   13   15   19   24   29   39   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     I      43     I      43      7   14   43     3    6    8    9   13   17   21   24   29   37   45   51   59   61   65   66   68   70   72   76 
LCS_GDT     G      44     G      44      7   14   43     3    6    8   11   15   18   21   24   33   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     A      45     A      45     10   14   43     3    8   10   12   15   18   21   27   36   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     V      46     V      46     10   14   43     3    8   10   12   15   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     R      47     R      47     10   14   43     3    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     S      48     S      48     10   14   43     3    8   10   12   15   18   28   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     A      49     A      49     10   14   43     3    8   10   12   15   18   21   24   25   37   45   52   57   61   65   66   68   70   72   76 
LCS_GDT     V      50     V      50     10   14   43     3    8   10   12   15   18   21   24   25   29   30   33   46   52   60   63   68   70   72   76 
LCS_GDT     I      51     I      51     10   14   43     3    8   10   12   15   18   21   24   25   29   30   32   34   41   46   52   62   66   67   71 
LCS_GDT     G      52     G      52     10   14   35     4    5   10   12   15   18   21   24   25   29   30   32   34   37   38   40   43   50   55   60 
LCS_GDT     Y      53     Y      53     10   14   26     3    8   10   12   15   18   20   24   25   29   30   32   34   37   37   40   42   45   50   56 
LCS_GDT     Y      54     Y      54     10   14   26     4    8   10   12   15   18   21   24   25   29   30   32   34   37   37   40   42   45   50   56 
LCS_GDT     D      55     D      55      7   14   26     4    6   10   12   15   18   20   24   25   29   30   32   33   37   37   39   41   44   45   50 
LCS_GDT     Q      56     Q      56      7   14   26     4    8   10   12   15   18   21   24   25   29   30   32   33   37   37   39   41   44   45   50 
LCS_GDT     E      57     E      57      4   13   26     3    4    9   10   11   15   16   21   24   27   28   30   31   32   36   37   40   41   44   46 
LCS_GDT     K      58     K      58      4   13   26     3    5    9   10   12   15   15   19   20   21   23   26   30   32   35   37   41   44   44   46 
LCS_GDT     K      59     K      59      4   13   26     3    4    9   10   12   15   15   19   20   21   26   29   31   33   35   40   41   44   44   46 
LCS_GDT     E      60     E      60      4   13   26     3    4    5    8   11   15   15   19   20   21   24   26   30   33   35   40   42   44   45   46 
LCS_GDT     Y      61     Y      61      8   13   26     3    6    9   10   12   13   15   19   20   21   24   28   30   33   35   40   42   44   45   46 
LCS_GDT     V      62     V      62      8   13   26     4    6    9   10   12   13   15   19   20   21   24   28   30   33   35   40   42   44   45   46 
LCS_GDT     K      63     K      63      8   13   26     4    6    9   10   12   13   15   19   20   21   23   28   30   33   35   40   42   44   45   46 
LCS_GDT     K      64     K      64      8   13   26     5    6    9   10   12   13   15   19   20   21   23   28   30   33   35   40   42   44   57   59 
LCS_GDT     E      65     E      65      8   13   26     5    6    9   10   12   14   15   19   20   21   23   28   30   33   35   40   41   48   57   59 
LCS_GDT     L      66     L      66      8   13   26     5    6    9   10   12   14   15   19   20   21   23   28   30   33   42   47   50   55   60   65 
LCS_GDT     M      67     M      67      8   13   26     5    6    9   10   12   13   15   19   20   21   23   24   26   28   42   47   50   55   57   68 
LCS_GDT     E      68     E      68      8   13   26     5    6    9   10   12   13   15   19   20   22   27   43   46   57   62   66   68   70   72   76 
LCS_GDT     P      69     P      69      5   13   37     3    4    8   10   12   15   18   30   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     L      70     L      70      5   13   38     3    5    8   10   12   18   29   33   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     E      71     E      71      5   11   38     3    5    6    6   11   17   23   32   34   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     I      72     I      72      5   10   38     3    5    6    7   10   17   22   32   33   39   43   51   59   61   65   66   68   70   72   76 
LCS_GDT     L      73     L      73      7   10   38     3    6    7   11   13   17   23   32   33   37   43   51   57   61   65   66   67   70   72   76 
LCS_GDT     S      74     S      74      7   10   38     3    6   10   13   15   17   23   32   33   37   43   51   54   61   63   66   67   70   71   73 
LCS_GDT     L      75     L      75      7   10   38     3    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     S      76     S      76      7   10   38     4    8   10   13   15   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G      77     G      77      7   10   38     3    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     N      78     N      78      7   10   38     3    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     V      79     V      79      7   10   38     3    6    7    8   10   14   19   22   31   33   42   48   57   61   65   66   68   70   72   76 
LCS_GDT     S      80     S      80      5   10   38     3    5    7   13   15   17   21   24   33   38   45   49   57   61   65   66   68   70   72   76 
LCS_GDT     M      81     M      81      5   10   38     3    4   10   13   15   17   21   24   26   30   35   43   50   55   58   64   66   69   72   76 
LCS_GDT     K      82     K      82      5   12   38     3    5    5    8   12   13   18   23   26   28   31   39   46   48   54   61   65   68   71   76 
LCS_GDT     D      83     D      83      5   12   38     3    5    5    8   12   13   15   22   26   28   31   37   42   42   53   55   57   64   70   75 
LCS_GDT     S      84     S      84      5   14   38     3    5   10   13   15   17   21   24   26   30   34   36   42   48   53   55   63   66   70   76 
LCS_GDT     K      85     K      85      9   14   38     6    8   10   13   15   17   21   24   26   30   34   37   46   48   53   58   63   66   71   76 
LCS_GDT     P      86     P      86      9   14   38     6    8    8   11   13   17   21   24   26   30   34   36   38   40   47   50   58   64   70   76 
LCS_GDT     F      87     F      87      9   14   38     6    8   10   13   15   17   21   24   26   30   34   39   50   54   58   64   66   69   72   76 
LCS_GDT     C      88     C      88      9   14   38     6    8    8   13   15   17   21   24   26   30   34   39   46   48   55   60   65   69   72   76 
LCS_GDT     H      89     H      89      9   14   38     6    8    8   11   14   20   23   30   35   41   47   52   59   61   65   66   68   70   72   76 
LCS_GDT     I      90     I      90      9   14   38     6    8   10   13   15   18   21   25   33   41   47   52   59   61   65   66   68   70   72   76 
LCS_GDT     H      91     H      91      9   14   38     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     V      92     V      92      9   14   38     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     L      93     L      93      9   14   38     4    8   10   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     L      94     L      94      7   14   38     4    6    9   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G      95     G      95      7   14   38     4    5    9   14   20   25   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     K      96     K      96      4   14   38     3    4    8   11   15   18   29   33   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     D      97     D      97      5   14   38     3    4    8   11   15   19   29   32   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G      98     G      98      5   14   38     3    4    7   10   15   18   20   24   26   30   47   52   59   61   65   66   68   70   72   76 
LCS_GDT     E      99     E      99      5   14   38     4    5    7   11   15   18   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     V     100     V     100      5   14   38     4    5    7   10   15   18   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     Y     101     Y     101      5   14   38     4    5    7   10   19   24   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G     102     G     102      5   14   38     4    5    7   10   16   24   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     G     103     G     103      5   14   38     3    5   10   14   20   24   29   35   38   41   49   52   59   61   65   66   68   70   72   76 
LCS_GDT     H     104     H     104      4   14   38     3    4    7   10   14   18   20   22   29   34   40   49   57   61   65   66   68   70   72   76 
LCS_GDT     L     105     L     105      4    8   38     3    4    7    7   15   17   19   24   26   30   34   39   46   48   53   55   65   69   71   76 
LCS_GDT     F     106     F     106      3    4   38     3    3    5    8   13   17   21   24   26   30   31   39   46   48   53   61   65   68   71   76 
LCS_GDT     S     107     S     107      3    4   38     3    3    4    7   11   17   21   23   26   28   31   32   34   34   35   40   43   45   56   60 
LCS_GDT     A     108     A     108      3    4   38     3    3    3    4    5    7   10   17   22   26   29   31   32   33   35   38   42   43   45   46 
LCS_GDT     E     109     E     109      3    4   19     3    3    3    3    4    5   10   11   12   14   15   19   26   30   34   38   42   43   45   46 
LCS_GDT     V     110     V     110      3    4   19     3    3    4    4    5    5    7   13   16   18   21   24   29   30   34   38   42   43   45   46 
LCS_GDT     F     111     F     111      3    4   19     3    3    4    4    5    5    7   11   12   14   16   23   26   29   32   37   41   43   45   46 
LCS_GDT     A     112     A     112      3    4   18     3    3    4    4    5    5    6    8   10   13   15   15   17   22   27   28   31   37   43   44 
LCS_GDT     C     113     C     113      3    9   18     3    3    4    4    5    9   10   13   14   15   19   23   26   27   30   32   35   37   41   44 
LCS_GDT     E     114     E     114      8    9   18     3    8    8    8    8    9   10   13   14   18   20   23   26   28   30   32   35   38   40   43 
LCS_GDT     V     115     V     115      8    9   18     3    8    8    8    8   11   13   16   18   18   20   23   26   28   30   32   35   38   40   44 
LCS_GDT     F     116     F     116      8    9   13     5    8    8    8   11   14   15   16   18   18   19   22   25   28   30   33   35   38   42   43 
LCS_GDT     V     117     V     117      8    9   13     5    8    8    8    8    9   10   10   10   12   15   20   24   26   30   32   33   36   40   43 
LCS_GDT     L     118     L     118      8    9   13     5    8    8    8    8    9   10   10   10   12   13   14   17   17   21   23   25   31   32   38 
LCS_GDT     P     119     P     119      8    9   13     5    8    8    8    8    9   10   10   10   12   13   14   17   17   21   23   25   27   32   37 
LCS_GDT     L     120     L     120      8    9   17     5    8    8    8    8    9   10   10   13   13   14   18   20   21   21   23   25   28   32   37 
LCS_GDT     S     121     S     121      8    9   17     5    8    8    8    8    9   10   10   13   13   15   18   20   21   21   23   25   27   32   37 
LCS_GDT     G     122     G     122      5    9   17     4    5    5    7    7    7    9   10   13   13   15   18   20   21   21   23   25   27   32   37 
LCS_GDT     E     123     E     123      5    7   17     4    5    5    7    7    7    8   10   13   13   15   18   20   21   21   23   25   27   32   37 
LCS_GDT     A     124     A     124      5    7   17     4    5    5    7    7    7    8   10   16   19   19   22   22   23   25   26   32   32   39   41 
LCS_GDT     P     125     P     125      5    7   17     4    5    5    7   10   15   15   16   16   19   19   22   22   24   26   29   32   36   40   41 
LCS_GDT     E     126     E     126      5    7   17     3    5    5    8   11   15   15   16   17   19   19   23   23   25   27   29   32   36   40   41 
LCS_GDT     R     127     R     127      3    4   17     3    3    3    4    5    5    8   10   13   13   15   18   20   23   25   29   30   36   40   41 
LCS_GDT     A     128     A     128      8    9   17     3    3    7    8    8    8    9    9    9   11   15   18   21   22   23   26   28   36   39   41 
LCS_GDT     F     129     F     129      8    9   17     3    6    7    8    8    8    9   11   11   16   19   19   21   22   24   26   37   42   49   55 
LCS_GDT     D     130     D     130      8    9   17     4    6    7    8    8    9    9   11   13   16   19   19   21   22   25   33   44   49   52   58 
LCS_GDT     E     131     E     131      8    9   17     4    6    7    8    8    8    9   11   11   12   19   19   21   22   36   42   45   48   58   65 
LCS_GDT     Q     132     Q     132      8    9   17     4    6    7    8    8    9    9   10   14   19   23   29   32   36   41   46   52   62   68   75 
LCS_GDT     T     133     T     133      8    9   17     4    6    7    8    8    8    9   11   13   18   23   34   36   37   43   50   58   63   69   76 
LCS_GDT     G     134     G     134      8    9   17     4    6    7    8    8    8    9   13   13   18   32   34   36   37   43   50   58   63   68   75 
LCS_GDT     L     135     L     135      8    9   17     4    6    7    8    8    9   10   13   13   19   23   29   32   37   41   50   58   63   70   76 
LCS_GDT     F     136     F     136      5    9   17     3    3    5    5    7    8    9   11   14   19   23   29   32   36   41   50   58   66   70   76 
LCS_GDT     L     137     L     137      5    6   14     3    3    5    5    7    9   10   13   13   15   17   20   28   32   37   49   56   65   70   76 
LCS_GDT     W     138     W     138      5    6   14     3    3    5    5    7    7    8   11   15   16   18   20   21   25   28   30   41   43   53   60 
LCS_GDT     L     139     L     139      3    6   14     3    3    3    3    7    7    7    9   10   11   13   14   14   17   20   22   26   35   36   43 
LCS_GDT     E     140     E     140      3    3   14     3    3    3    5    7    7    8   11   11   12   13   14   15   21   22   26   28   35   37   41 
LCS_AVERAGE  LCS_A:  13.40  (   6.00    9.28   24.94 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     16     16     17     20     25     29     35     38     41     49     52     59     61     65     66     68     70     72     76 
GDT PERCENT_CA  12.12  12.12  12.12  12.88  15.15  18.94  21.97  26.52  28.79  31.06  37.12  39.39  44.70  46.21  49.24  50.00  51.52  53.03  54.55  57.58
GDT RMS_LOCAL    0.29   0.29   0.29   0.68   1.79   2.16   2.38   2.74   2.90   3.14   3.77   3.93   4.32   4.43   4.73   4.79   5.04   5.14   5.54   6.80
GDT RMS_ALL_CA  20.87  20.87  20.87  20.51  18.04  18.32  18.38  18.31  18.32  18.19  18.13  18.15  17.83  17.89  17.59  17.66  17.68  17.79  17.21  15.76

#      Molecule1      Molecule2       DISTANCE
LGA    G       9      G       9          5.719
LGA    K      10      K      10          2.569
LGA    G      11      G      11          2.261
LGA    F      12      F      12          1.699
LGA    L      13      L      13          1.536
LGA    L      14      L      14          1.915
LGA    R      15      R      15          1.882
LGA    L      16      L      16          3.469
LGA    D      17      D      17          5.330
LGA    Y      18      Y      18          2.845
LGA    G      19      G      19          2.437
LGA    K      20      K      20          3.962
LGA    D      21      D      21          8.914
LGA    L      22      L      22         10.722
LGA    V      23      V      23          9.423
LGA    R      24      R      24          5.892
LGA    Q      25      Q      25          5.802
LGA    I      26      I      26          6.242
LGA    E      27      E      27          4.175
LGA    E      28      E      28          1.174
LGA    F      29      F      29          3.317
LGA    L      30      L      30          2.158
LGA    E      31      E      31          2.409
LGA    E      32      E      32          3.602
LGA    K      33      K      33          3.001
LGA    G      34      G      34          2.391
LGA    I      35      I      35          2.163
LGA    H      36      H      36          6.035
LGA    A      37      A      37          7.578
LGA    A      38      A      38          7.471
LGA    H      39      H      39          8.439
LGA    I      40      I      40          7.960
LGA    S      41      S      41          8.518
LGA    A      42      A      42          7.516
LGA    I      43      I      43          8.376
LGA    G      44      G      44          7.089
LGA    A      45      A      45          6.788
LGA    V      46      V      46          3.467
LGA    R      47      R      47          1.029
LGA    S      48      S      48          3.716
LGA    A      49      A      49          6.640
LGA    V      50      V      50          9.520
LGA    I      51      I      51         12.397
LGA    G      52      G      52         16.160
LGA    Y      53      Y      53         19.037
LGA    Y      54      Y      54         21.335
LGA    D      55      D      55         25.610
LGA    Q      56      Q      56         27.544
LGA    E      57      E      57         33.930
LGA    K      58      K      58         34.999
LGA    K      59      K      59         32.874
LGA    E      60      E      60         29.486
LGA    Y      61      Y      61         28.976
LGA    V      62      V      62         27.394
LGA    K      63      K      63         25.819
LGA    K      64      K      64         21.640
LGA    E      65      E      65         20.885
LGA    L      66      L      66         14.966
LGA    M      67      M      67         14.061
LGA    E      68      E      68          8.609
LGA    P      69      P      69          4.523
LGA    L      70      L      70          4.080
LGA    E      71      E      71          6.670
LGA    I      72      I      72          7.189
LGA    L      73      L      73          7.745
LGA    S      74      S      74          7.715
LGA    L      75      L      75          2.501
LGA    S      76      S      76          3.684
LGA    G      77      G      77          1.923
LGA    N      78      N      78          2.865
LGA    V      79      V      79          8.937
LGA    S      80      S      80          9.265
LGA    M      81      M      81         15.221
LGA    K      82      K      82         18.449
LGA    D      83      D      83         23.572
LGA    S      84      S      84         22.008
LGA    K      85      K      85         18.823
LGA    P      86      P      86         17.316
LGA    F      87      F      87         12.911
LGA    C      88      C      88         11.947
LGA    H      89      H      89          6.072
LGA    I      90      I      90          6.011
LGA    H      91      H      91          1.474
LGA    V      92      V      92          1.734
LGA    L      93      L      93          2.625
LGA    L      94      L      94          0.808
LGA    G      95      G      95          2.126
LGA    K      96      K      96          4.766
LGA    D      97      D      97          5.321
LGA    G      98      G      98          6.184
LGA    E      99      E      99          3.885
LGA    V     100      V     100          3.916
LGA    Y     101      Y     101          3.518
LGA    G     102      G     102          3.990
LGA    G     103      G     103          3.409
LGA    H     104      H     104          7.864
LGA    L     105      L     105         11.715
LGA    F     106      F     106         15.246
LGA    S     107      S     107         20.305
LGA    A     108      A     108         23.247
LGA    E     109      E     109         25.503
LGA    V     110      V     110         24.942
LGA    F     111      F     111         29.730
LGA    A     112      A     112         29.618
LGA    C     113      C     113         24.474
LGA    E     114      E     114         24.274
LGA    V     115      V     115         23.431
LGA    F     116      F     116         18.999
LGA    V     117      V     117         22.461
LGA    L     118      L     118         23.083
LGA    P     119      P     119         28.657
LGA    L     120      L     120         31.231
LGA    S     121      S     121         38.101
LGA    G     122      G     122         40.803
LGA    E     123      E     123         39.388
LGA    A     124      A     124         35.275
LGA    P     125      P     125         30.845
LGA    E     126      E     126         34.113
LGA    R     127      R     127         35.075
LGA    A     128      A     128         34.256
LGA    F     129      F     129         32.002
LGA    D     130      D     130         32.829
LGA    E     131      E     131         34.885
LGA    Q     132      Q     132         32.775
LGA    T     133      T     133         28.330
LGA    G     134      G     134         29.165
LGA    L     135      L     135         25.361
LGA    F     136      F     136         23.693
LGA    L     137      L     137         19.855
LGA    W     138      W     138         19.404
LGA    L     139      L     139         21.319
LGA    E     140      E     140         27.393

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  132  132    4.0     35    2.74    25.379    21.419     1.232

LGA_LOCAL      RMSD =  2.741  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.308  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 15.187  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.066433 * X  +  -0.079102 * Y  +   0.994650 * Z  +  51.616253
  Y_new =   0.984534 * X  +  -0.156763 * Y  +  -0.078224 * Z  +   8.154100
  Z_new =   0.162112 * X  +   0.984463 * Y  +   0.067465 * Z  +  20.569109 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.502374   -1.639219  [ DEG:    86.0797    -93.9203 ]
  Theta =  -0.162830   -2.978762  [ DEG:    -9.3295   -170.6705 ]
  Phi   =   1.503422   -1.638171  [ DEG:    86.1397    -93.8603 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS599_5-D1                               
REMARK     2: T0312_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS599_5-D1.T0312_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  132  132   4.0   35   2.74  21.419    15.19
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS599_5-D1
PFRMAT TS                                                                       
TARGET T0312                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      9  CA  GLY     9      66.024  15.317  26.665  1.00  0.00              
ATOM     10  CA  LYS    10      64.787  18.459  25.038  1.00  0.00              
ATOM     11  CA  GLY    11      61.574  18.429  23.225  1.00  0.00              
ATOM     12  CA  PHE    12      61.464  18.871  19.383  1.00  0.00              
ATOM     13  CA  LEU    13      58.122  19.412  17.561  1.00  0.00              
ATOM     14  CA  LEU    14      57.793  18.038  14.040  1.00  0.00              
ATOM     15  CA  ARG    15      55.015  19.151  11.740  1.00  0.00              
ATOM     16  CA  LEU    16      53.854  16.808   8.990  1.00  0.00              
ATOM     17  CA  ASP    17      52.231  18.216   5.773  1.00  0.00              
ATOM     18  CA  TYR    18      51.716  16.040   2.781  1.00  0.00              
ATOM     19  CA  GLY    19      54.906  14.806   1.132  1.00  0.00              
ATOM     20  CA  LYS    20      56.969  15.088   4.349  1.00  0.00              
ATOM     21  CA  ASP    21      60.504  16.386   4.095  1.00  0.00              
ATOM     22  CA  LEU    22      61.148  18.694   7.036  1.00  0.00              
ATOM     23  CA  VAL    23      59.993  16.156   9.524  1.00  0.00              
ATOM     24  CA  ARG    24      62.268  13.453   8.071  1.00  0.00              
ATOM     25  CA  GLN    25      65.269  15.842   8.243  1.00  0.00              
ATOM     26  CA  ILE    26      64.505  16.744  11.846  1.00  0.00              
ATOM     27  CA  GLU    27      64.217  13.023  12.777  1.00  0.00              
ATOM     28  CA  GLU    28      67.465  12.227  11.216  1.00  0.00              
ATOM     29  CA  PHE    29      69.167  15.089  12.924  1.00  0.00              
ATOM     30  CA  LEU    30      67.763  14.190  16.376  1.00  0.00              
ATOM     31  CA  GLU    31      68.697  10.582  16.111  1.00  0.00              
ATOM     32  CA  GLU    32      72.240  11.496  14.953  1.00  0.00              
ATOM     33  CA  LYS    33      72.840  13.704  17.930  1.00  0.00              
ATOM     34  CA  GLY    34      71.282  11.392  20.431  1.00  0.00              
ATOM     35  CA  ILE    35      68.692  13.940  21.566  1.00  0.00              
ATOM     36  CA  HIS    36      65.577  12.726  23.139  1.00  0.00              
ATOM     37  CA  ALA    37      62.097  13.820  22.662  1.00  0.00              
ATOM     38  CA  ALA    38      60.279  14.140  19.374  1.00  0.00              
ATOM     39  CA  HIS    39      56.671  15.304  19.187  1.00  0.00              
ATOM     40  CA  ILE    40      54.809  14.881  15.885  1.00  0.00              
ATOM     41  CA  SER    41      51.987  17.124  14.854  1.00  0.00              
ATOM     42  CA  ALA    42      49.984  16.219  11.801  1.00  0.00              
ATOM     43  CA  ILE    43      48.367  18.877   9.749  1.00  0.00              
ATOM     44  CA  GLY    44      46.228  17.744   6.887  1.00  0.00              
ATOM     45  CA  ALA    45      47.489  15.623   4.020  1.00  0.00              
ATOM     46  CA  VAL    46      49.525  12.899   5.653  1.00  0.00              
ATOM     47  CA  ARG    47      48.829   9.412   4.506  1.00  0.00              
ATOM     48  CA  SER    48      51.404   7.439   6.499  1.00  0.00              
ATOM     49  CA  ALA    49      52.326   9.469   9.377  1.00  0.00              
ATOM     50  CA  VAL    50      54.554   8.242  12.278  1.00  0.00              
ATOM     51  CA  ILE    51      54.595  10.238  15.451  1.00  0.00              
ATOM     52  CA  GLY    52      57.086   9.698  18.269  1.00  0.00              
ATOM     53  CA  TYR    53      56.231  10.989  21.654  1.00  0.00              
ATOM     54  CA  TYR    54      58.613  10.661  24.643  1.00  0.00              
ATOM     55  CA  ASP    55      57.169  10.782  28.046  1.00  0.00              
ATOM     56  CA  GLN    56      59.089  12.237  30.983  1.00  0.00              
ATOM     57  CA  GLU    57      56.933  15.336  31.714  1.00  0.00              
ATOM     58  CA  LYS    58      56.295  16.263  28.070  1.00  0.00              
ATOM     59  CA  LYS    59      52.646  17.170  27.863  1.00  0.00              
ATOM     60  CA  GLU    60      51.720  15.482  24.599  1.00  0.00              
ATOM     61  CA  TYR    61      50.065  18.273  22.695  1.00  0.00              
ATOM     62  CA  VAL    62      50.698  17.295  19.030  1.00  0.00              
ATOM     63  CA  LYS    63      48.106  18.726  16.666  1.00  0.00              
ATOM     64  CA  LYS    64      45.988  16.443  14.604  1.00  0.00              
ATOM     65  CA  GLU    65      44.060  17.630  11.637  1.00  0.00              
ATOM     66  CA  LEU    66      42.100  14.960   9.787  1.00  0.00              
ATOM     67  CA  MET    67      40.927  15.482   6.260  1.00  0.00              
ATOM     68  CA  GLU    68      38.690  12.495   5.599  1.00  0.00              
ATOM     69  CA  PRO    69      39.900   9.861   3.141  1.00  0.00              
ATOM     70  CA  LEU    70      41.629   7.495   5.590  1.00  0.00              
ATOM     71  CA  GLU    71      45.387   7.857   6.308  1.00  0.00              
ATOM     72  CA  ILE    72      47.055   5.852   8.945  1.00  0.00              
ATOM     73  CA  LEU    73      48.775   7.609  11.658  1.00  0.00              
ATOM     74  CA  SER    74      50.912   5.760  13.925  1.00  0.00              
ATOM     75  CA  LEU    75      51.677   7.159  17.324  1.00  0.00              
ATOM     76  CA  SER    76      54.453   5.810  19.294  1.00  0.00              
ATOM     77  CA  GLY    77      54.667   6.700  22.915  1.00  0.00              
ATOM     78  CA  ASN    78      57.735   5.887  24.883  1.00  0.00              
ATOM     79  CA  VAL    79      57.643   5.951  28.587  1.00  0.00              
ATOM     80  CA  SER    80      60.868   5.307  30.396  1.00  0.00              
ATOM     81  CA  MET    81      61.182   4.984  34.147  1.00  0.00              
ATOM     82  CA  LYS    82      64.158   6.913  35.377  1.00  0.00              
ATOM     83  CA  ASP    83      65.363   5.428  38.480  1.00  0.00              
ATOM     84  CA  SER    84      64.501   1.800  38.160  1.00  0.00              
ATOM     85  CA  LYS    85      65.048   1.246  34.419  1.00  0.00              
ATOM     86  CA  PRO    86      61.745   0.058  33.068  1.00  0.00              
ATOM     87  CA  PHE    87      60.844   1.152  29.634  1.00  0.00              
ATOM     88  CA  CYS    88      57.251   1.209  28.568  1.00  0.00              
ATOM     89  CA  HIS    89      56.359   1.379  24.978  1.00  0.00              
ATOM     90  CA  ILE    90      52.884   2.406  23.994  1.00  0.00              
ATOM     91  CA  HIS    91      51.653   1.964  20.488  1.00  0.00              
ATOM     92  CA  VAL    92      48.760   4.044  19.364  1.00  0.00              
ATOM     93  CA  LEU    93      47.160   3.649  15.983  1.00  0.00              
ATOM     94  CA  LEU    94      45.049   6.413  14.571  1.00  0.00              
ATOM     95  CA  GLY    95      42.802   5.972  11.612  1.00  0.00              
ATOM     96  CA  LYS    96      41.889   8.958   9.403  1.00  0.00              
ATOM     97  CA  ASP    97      38.227   8.484  10.314  1.00  0.00              
ATOM     98  CA  GLY    98      38.979   9.062  13.980  1.00  0.00              
ATOM     99  CA  GLU    99      38.896   5.664  15.492  1.00  0.00              
ATOM    100  CA  VAL   100      41.652   5.018  17.966  1.00  0.00              
ATOM    101  CA  TYR   101      43.237   1.747  18.067  1.00  0.00              
ATOM    102  CA  GLY   102      45.358   0.895  21.012  1.00  0.00              
ATOM    103  CA  GLY   103      48.042  -1.729  20.800  1.00  0.00              
ATOM    104  CA  HIS   104      49.230  -3.586  23.890  1.00  0.00              
ATOM    105  CA  LEU   105      51.407  -1.047  25.786  1.00  0.00              
ATOM    106  CA  PHE   106      48.783   1.690  25.195  1.00  0.00              
ATOM    107  CA  SER   107      46.043  -0.416  26.864  1.00  0.00              
ATOM    108  CA  ALA   108      48.253  -0.782  29.983  1.00  0.00              
ATOM    109  CA  GLU   109      49.153   2.939  30.000  1.00  0.00              
ATOM    110  CA  VAL   110      45.929   4.893  29.812  1.00  0.00              
ATOM    111  CA  PHE   111      43.701   2.899  32.567  1.00  0.00              
ATOM    112  CA  ALA   112      46.785   3.103  34.685  1.00  0.00              
ATOM    113  CA  CYS   113      47.340   6.820  34.086  1.00  0.00              
ATOM    114  CA  GLU   114      43.934   8.044  35.025  1.00  0.00              
ATOM    115  CA  VAL   115      41.667   5.846  32.934  1.00  0.00              
ATOM    116  CA  PHE   116      43.896   6.001  29.542  1.00  0.00              
ATOM    117  CA  VAL   117      41.137   4.990  27.067  1.00  0.00              
ATOM    118  CA  LEU   118      41.818   3.433  23.637  1.00  0.00              
ATOM    119  CA  PRO   119      39.165   3.045  21.020  1.00  0.00              
ATOM    120  CA  LEU   120      39.306   0.258  18.507  1.00  0.00              
ATOM    121  CA  SER   121      36.592   0.496  15.913  1.00  0.00              
ATOM    122  CA  GLY   122      33.696   1.892  17.930  1.00  0.00              
ATOM    123  CA  GLU   123      34.561   0.289  21.269  1.00  0.00              
ATOM    124  CA  ALA   124      35.258   2.742  24.065  1.00  0.00              
ATOM    125  CA  PRO   125      37.745   2.187  26.805  1.00  0.00              
ATOM    126  CA  GLU   126      36.232   3.641  29.967  1.00  0.00              
ATOM    127  CA  ARG   127      33.101   1.576  29.158  1.00  0.00              
ATOM    128  CA  ALA   128      34.967  -1.691  28.593  1.00  0.00              
ATOM    129  CA  PHE   129      37.064  -1.390  31.782  1.00  0.00              
ATOM    130  CA  ASP   130      34.676  -0.429  34.472  1.00  0.00              
ATOM    131  CA  GLU   131      35.296   3.234  35.115  1.00  0.00              
ATOM    132  CA  GLN   132      34.918   2.964  38.746  1.00  0.00              
ATOM    133  CA  THR   133      37.461   0.323  39.467  1.00  0.00              
ATOM    134  CA  GLY   134      40.094   1.778  36.995  1.00  0.00              
ATOM    135  CA  LEU   135      40.325  -1.359  34.949  1.00  0.00              
ATOM    136  CA  PHE   136      43.943  -1.879  34.095  1.00  0.00              
ATOM    137  CA  LEU   137      44.665  -4.562  31.583  1.00  0.00              
ATOM    138  CA  TRP   138      46.517  -4.286  28.346  1.00  0.00              
ATOM    139  CA  LEU   139      47.878  -7.796  27.794  1.00  0.00              
ATOM    140  CA  GLU   140      44.689  -9.496  28.977  1.00  0.00              
TER                                                                             
END
