
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  103 (  103),  selected  103 , name T0314TS599_2-D1
# Molecule2: number of CA atoms  103 ( 1643),  selected  103 , name T0314_D1.pdb
# PARAMETERS: T0314TS599_2-D1.T0314_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35        69 - 103         4.91    13.14
  LCS_AVERAGE:     25.37

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         2 - 15          1.97    12.35
  LONGEST_CONTINUOUS_SEGMENT:    14        17 - 30          1.81    28.09
  LCS_AVERAGE:      9.77

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:     9        20 - 28          0.75    25.66
  LONGEST_CONTINUOUS_SEGMENT:     9        66 - 74          0.98    25.98
  LONGEST_CONTINUOUS_SEGMENT:     9        68 - 76          0.94    27.43
  LONGEST_CONTINUOUS_SEGMENT:     9        77 - 85          0.81    22.40
  LCS_AVERAGE:      6.40

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  103
LCS_GDT     M       1     M       1      3    6   22     3    3    4    6   10   15   19   23   28   32   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     S       2     S       2      4   14   22     3    3    4   10   12   17   19   21   24   28   33   39   47   53   59   63   66   70   73   77 
LCS_GDT     I       3     I       3      4   14   22     3    3    4   10   12   17   19   21   24   30   35   40   49   53   59   63   66   70   73   77 
LCS_GDT     T       4     T       4      4   14   22     3    5    5   10   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     S       5     S       5      4   14   22     3    4    4    9   10   14   17   22   28   36   39   44   49   53   59   63   66   70   73   77 
LCS_GDT     T       6     T       6      7   14   22     3    4    9   11   13   17   19   23   28   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     D       7     D       7      8   14   22     4    6    9   11   13   17   19   23   28   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     I       8     I       8      8   14   22     4    6    9   11   13   17   19   23   28   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     C       9     C       9      8   14   22     4    6    9   11   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     Q      10     Q      10      8   14   22     4    6    9   11   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     A      11     A      11      8   14   22     4    6    9   11   13   17   19   23   28   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     A      12     A      12      8   14   22     4    6    9   11   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     D      13     D      13      8   14   22     4    6    9   11   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     A      14     A      14      8   14   22     4    6    9   10   13   17   19   23   28   34   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     L      15     L      15      7   14   22     4    6    9   11   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     K      16     K      16      3   11   22     3    3    4    4    9   15   19   22   28   32   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     G      17     G      17      3   14   22     3    6    9   12   13   13   14   16   21   28   35   45   49   53   59   63   66   70   73   77 
LCS_GDT     F      18     F      18      4   14   22     3    4    9   12   13   13   14   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     V      19     V      19      5   14   22     3    6    9   12   13   13   16   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     G      20     G      20      9   14   22     4    8    9   10   13   13   16   20   24   28   36   43   49   53   55   60   66   69   73   77 
LCS_GDT     F      21     F      21      9   14   22     4    8    9   12   13   13   14   17   22   25   30   39   43   50   53   57   59   64   68   75 
LCS_GDT     N      22     N      22      9   14   22     4    8    9   12   13   13   14   14   15   17   22   31   41   49   53   57   59   62   68   71 
LCS_GDT     R      23     R      23      9   14   18     4    8    9   12   13   13   14   14   15   15   16   24   29   35   39   48   53   58   62   64 
LCS_GDT     K      24     K      24      9   14   18     4    8    9   12   13   13   14   14   15   15   17   24   27   35   39   48   54   58   62   64 
LCS_GDT     T      25     T      25      9   14   21     4    8    9   12   13   13   14   14   15   25   34   43   49   53   56   63   66   69   73   77 
LCS_GDT     G      26     G      26      9   14   23     4    8    9   12   13   13   14   17   22   25   35   43   49   53   55   60   66   69   73   77 
LCS_GDT     R      27     R      27      9   14   23     4    8    9   12   13   13   16   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     Y      28     Y      28      9   14   23     3    7    9   12   13   13   14   21   30   36   39   44   49   53   57   63   66   70   73   77 
LCS_GDT     I      29     I      29      5   14   23     3    5    8   12   13   13   14   20   25   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     V      30     V      30      5   14   23     3    5    6    8   11   12   15   18   21   27   32   40   48   53   59   63   66   70   73   77 
LCS_GDT     R      31     R      31      5    8   23     3    5    6    8    9   12   13   16   21   22   27   37   46   52   59   63   66   70   73   77 
LCS_GDT     F      32     F      32      5    8   23     3    4    6    8    9   11   13   16   21   22   26   31   43   49   55   61   66   70   73   77 
LCS_GDT     S      33     S      33      5    8   23     4    4    6    8    9    9   12   13   16   22   26   27   31   37   50   60   65   70   73   77 
LCS_GDT     E      34     E      34      5    8   23     4    4    5    8    8    9   12   13   16   22   26   27   31   46   50   60   65   70   72   77 
LCS_GDT     D      35     D      35      5    8   23     4    4    5    8    8    9   12   13   16   19   26   27   29   37   50   56   65   67   70   76 
LCS_GDT     S      36     S      36      5    8   23     4    4    5    8    8    9   12   13   16   22   26   27   34   44   50   56   65   67   70   76 
LCS_GDT     F      37     F      37      5    8   23     4    4    5    8    8    9   12   13   16   22   26   30   40   46   52   60   65   70   72   77 
LCS_GDT     G      38     G      38      4    7   23     4    4    6    6    6    8   11   13   16   21   26   34   43   52   57   62   66   70   73   77 
LCS_GDT     M      39     M      39      4    7   23     4    4    6    6    6    7    8   13   16   20   23   27   29   46   57   61   66   70   73   77 
LCS_GDT     D      40     D      40      4    7   23     3    4    6    6    6    7   10   13   16   20   23   31   43   51   59   63   66   70   73   77 
LCS_GDT     V      41     V      41      4    7   23     3    4    5    6    6    7   10   13   16   22   26   37   46   53   59   63   66   70   73   77 
LCS_GDT     A      42     A      42      4    7   23     3    4    5    6    6    7   10   15   17   25   32   37   45   51   59   63   66   70   73   77 
LCS_GDT     D      43     D      43      4    7   23     3    4    5    6    6    7    8   15   20   23   28   34   39   43   45   54   56   60   64   69 
LCS_GDT     D      44     D      44      3    9   23     3    4    5    8    8    9   11   15   20   23   28   31   39   43   45   54   58   67   68   74 
LCS_GDT     S      45     S      45      8    9   23     3    4    8    8    8    9   12   18   20   25   32   37   47   53   59   63   66   70   73   77 
LCS_GDT     I      46     I      46      8    9   23     3    7    8    8    8    9   11   12   13   19   31   36   41   45   53   58   66   70   73   77 
LCS_GDT     T      47     T      47      8    9   23     4    7    8    8    8   11   13   16   21   26   32   39   47   53   59   63   66   70   73   77 
LCS_GDT     P      48     P      48      8    9   23     4    7    8    8    8    9   11   12   14   19   21   24   28   35   40   48   63   70   73   77 
LCS_GDT     T      49     T      49      8    9   18     4    7    8    8    8    9   11   12   13   14   15   17   20   27   28   29   35   38   57   62 
LCS_GDT     S      50     S      50      8    9   18     4    7    8    8    8    9   10   12   15   15   16   20   23   26   30   32   37   46   51   68 
LCS_GDT     E      51     E      51      8    9   18     4    7    8    8    8    9   11   12   15   17   29   40   44   52   58   63   66   70   73   77 
LCS_GDT     F      52     F      52      8    9   18     3    7    8    8    8    9   11   12   15   17   19   28   30   42   49   57   63   66   72   77 
LCS_GDT     V      53     V      53      6    9   18     4    5    6    6    6    7    8   10   12   16   19   21   23   27   38   46   51   60   63   69 
LCS_GDT     W      54     W      54      6    7   18     4    5    6    6    6    9   11   12   13   14   16   18   20   24   25   29   32   39   46   58 
LCS_GDT     S      55     S      55      6    7   18     4    4    6    6    6    9   11   12   13   14   16   18   22   25   32   36   38   41   51   58 
LCS_GDT     S      56     S      56      6    7   18     4    5    6    6    6    9   11   12   13   14   16   18   22   24   25   32   36   39   42   45 
LCS_GDT     V      57     V      57      6    7   18     3    5    6    6    7    9   11   12   13   14   15   17   22   24   25   27   29   32   37   43 
LCS_GDT     R      58     R      58      6    7   18     3    5    6    6    7    9   11   11   12   14   15   18   22   24   25   27   29   32   36   40 
LCS_GDT     D      59     D      59      4    7   19     3    4    4    5    7    9    9   12   14   14   16   18   22   24   25   27   29   32   36   37 
LCS_GDT     D      60     D      60      7    9   22     4    6    7    7    8    9   10   11   14   14   14   15   20   24   25   27   29   32   33   33 
LCS_GDT     V      61     V      61      7    9   22     4    6    7    7    8    9   10   11   14   14   15   18   21   24   25   27   29   32   33   35 
LCS_GDT     M      62     M      62      7    9   22     4    6    7    7    8    9   10   12   14   16   18   18   22   24   25   27   29   32   36   40 
LCS_GDT     R      63     R      63      7    9   22     4    6    7    7    8    9   11   14   15   16   18   18   22   24   28   30   31   34   37   42 
LCS_GDT     L      64     L      64      7   13   22     4    6    7    7    9   13   14   14   15   16   18   19   23   25   29   31   35   38   42   45 
LCS_GDT     G      65     G      65      7   13   22     4    6   10   10   12   13   14   14   15   16   18   23   27   29   32   35   40   44   52   56 
LCS_GDT     R      66     R      66      9   13   22     5    6    9   11   12   13   14   14   15   16   20   22   28   32   34   36   40   50   54   62 
LCS_GDT     E      67     E      67      9   13   22     5    5    9   11   12   13   14   14   16   20   23   30   36   44   53   57   63   70   73   77 
LCS_GDT     Q      68     Q      68      9   13   22     5    7   10   11   12   13   14   14   15   20   21   28   32   39   47   54   60   67   70   77 
LCS_GDT     L      69     L      69      9   13   35     5    7   10   11   12   13   14   14   16   18   25   29   37   42   53   57   63   70   73   77 
LCS_GDT     Q      70     Q      70      9   13   35     4    7   10   11   13   16   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     I      71     I      71      9   13   35     4    7   10   11   12   17   19   23   28   32   39   44   49   53   59   63   66   70   73   77 
LCS_GDT     L      72     L      72      9   13   35     4    7   10   11   13   17   19   23   28   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     L      73     L      73      9   13   35     5    7   10   11   12   15   18   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     E      74     E      74      9   13   35     4    7   10   11   12   13   14   17   23   28   36   45   49   53   59   63   66   70   73   77 
LCS_GDT     Q      75     Q      75      9   13   35     4    7   10   11   12   13   14   20   26   29   36   45   49   53   59   63   66   70   73   77 
LCS_GDT     N      76     N      76      9   13   35     4    6   10   11   12   12   16   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     I      77     I      77      9   13   35     5    9   11   13   13   13   14   17   19   22   32   45   49   53   59   63   66   70   73   77 
LCS_GDT     N      78     N      78      9   10   35     5    9   11   13   13   13   16   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     E      79     E      79      9   10   35     5    9   11   13   13   13   18   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     R      80     R      80      9   10   35     5    9   11   13   13   13   16   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     L      81     L      81      9   10   35     5    9   11   13   13   13   16   20   30   32   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     N      82     N      82      9   10   35     3    9   11   13   13   13   16   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     I      83     I      83      9   10   35     3    9   11   13   13   13   16   20   26   29   38   45   49   53   59   63   66   70   73   77 
LCS_GDT     G      84     G      84      9   10   35     4    9   11   13   13   13   14   17   23   27   34   43   48   52   55   62   65   69   73   77 
LCS_GDT     E      85     E      85      9   10   35     3    6   11   13   13   13   18   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     P      86     P      86      7   10   35     5    6    7    8    8   11   14   17   21   27   29   40   48   53   57   63   66   70   73   77 
LCS_GDT     L      87     L      87      7   10   35     5    6    7    8   10   12   18   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     L      88     L      88      7    7   35     5    6    7    8    8    9   13   19   26   29   36   44   49   53   59   63   66   70   73   77 
LCS_GDT     V      89     V      89      7    7   35     5    6    7   13   13   13   18   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     Y      90     Y      90      7    7   35     5    6   11   13   13   13   14   17   22   29   35   45   49   53   59   63   66   70   73   77 
LCS_GDT     L      91     L      91      7    7   35     5    9   11   13   13   13   14   17   17   25   31   37   49   52   59   63   66   69   73   77 
LCS_GDT     R      92     R      92      7    7   35     3    4   11   13   13   13   14   17   20   25   31   41   49   52   59   63   66   69   72   76 
LCS_GDT     R      93     R      93      3    5   35     3    4    7    7   11   12   18   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     Q      94     Q      94      4    5   35     3    4    4    5    7    9   16   21   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     D      95     D      95      4    5   35     3    4    4    4    9   14   18   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     L      96     L      96      4    5   35     3    4    8    9   13   16   18   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     P      97     P      97      4    5   35     3    4    7    9   12   14   18   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     E      98     E      98      4    4   35     3    5    6    7    9   12   17   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     I      99     I      99      4    4   35     3    5    6    7   11   15   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     T     100     T     100      3    3   35     3    3    3    9   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     A     101     A     101      3    3   35     1    3    8   11   13   17   19   23   30   36   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     Q     102     Q     102      3    3   35     0    3    3    4    5    6    6   18   22   28   39   45   49   53   59   63   66   70   73   77 
LCS_GDT     R     103     R     103      3    3   35     0    3    3    3    3    4    4   10   12   13   22   29   35   44   52   57   63   66   70   73 
LCS_AVERAGE  LCS_A:  13.85  (   6.40    9.77   25.37 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      5      9     11     13     13     17     19     23     30     36     39     45     49     53     59     63     66     70     73     77 
GDT PERCENT_CA   4.85   8.74  10.68  12.62  12.62  16.50  18.45  22.33  29.13  34.95  37.86  43.69  47.57  51.46  57.28  61.17  64.08  67.96  70.87  74.76
GDT RMS_LOCAL    0.13   0.71   0.92   1.09   1.09   2.06   2.33   3.00   3.68   6.58   4.13   4.58   4.66   4.89   5.48   5.66   5.94   6.33   6.44   6.73
GDT RMS_ALL_CA  23.27  22.62  22.45  22.87  22.87  12.57  12.68  12.37  13.11  12.98  12.72  12.61  12.64  12.61  12.66  12.55  12.71  12.83  12.57  12.61

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          4.793
LGA    S       2      S       2          8.150
LGA    I       3      I       3          6.369
LGA    T       4      T       4          1.883
LGA    S       5      S       5          4.715
LGA    T       6      T       6          2.831
LGA    D       7      D       7          3.034
LGA    I       8      I       8          3.349
LGA    C       9      C       9          2.094
LGA    Q      10      Q      10          1.178
LGA    A      11      A      11          2.934
LGA    A      12      A      12          1.898
LGA    D      13      D      13          3.323
LGA    A      14      A      14          5.886
LGA    L      15      L      15          4.581
LGA    K      16      K      16          6.482
LGA    G      17      G      17         10.294
LGA    F      18      F      18          9.475
LGA    V      19      V      19          9.277
LGA    G      20      G      20          9.817
LGA    F      21      F      21         12.051
LGA    N      22      N      22         11.526
LGA    R      23      R      23         15.616
LGA    K      24      K      24         13.351
LGA    T      25      T      25          8.950
LGA    G      26      G      26         10.841
LGA    R      27      R      27          9.057
LGA    Y      28      Y      28          9.720
LGA    I      29      I      29          9.853
LGA    V      30      V      30         11.389
LGA    R      31      R      31         14.041
LGA    F      32      F      32         16.480
LGA    S      33      S      33         19.593
LGA    E      34      E      34         19.792
LGA    D      35      D      35         22.756
LGA    S      36      S      36         22.202
LGA    F      37      F      37         19.928
LGA    G      38      G      38         16.421
LGA    M      39      M      39         16.002
LGA    D      40      D      40         13.769
LGA    V      41      V      41         11.575
LGA    A      42      A      42          7.929
LGA    D      43      D      43         11.826
LGA    D      44      D      44         12.053
LGA    S      45      S      45          8.375
LGA    I      46      I      46         12.278
LGA    T      47      T      47          9.744
LGA    P      48      P      48         14.332
LGA    T      49      T      49         16.611
LGA    S      50      S      50         15.568
LGA    E      51      E      51          8.345
LGA    F      52      F      52          9.599
LGA    V      53      V      53         11.022
LGA    W      54      W      54         14.013
LGA    S      55      S      55         15.863
LGA    S      56      S      56         21.003
LGA    V      57      V      57         26.005
LGA    R      58      R      58         30.710
LGA    D      59      D      59         32.572
LGA    D      60      D      60         32.139
LGA    V      61      V      61         31.721
LGA    M      62      M      62         25.607
LGA    R      63      R      63         25.627
LGA    L      64      L      64         20.529
LGA    G      65      G      65         16.830
LGA    R      66      R      66         13.389
LGA    E      67      E      67          9.138
LGA    Q      68      Q      68          9.601
LGA    L      69      L      69          8.405
LGA    Q      70      Q      70          3.749
LGA    I      71      I      71          2.502
LGA    L      72      L      72          2.719
LGA    L      73      L      73          6.525
LGA    E      74      E      74          7.829
LGA    Q      75      Q      75          5.978
LGA    N      76      N      76          7.534
LGA    I      77      I      77          8.919
LGA    N      78      N      78          4.862
LGA    E      79      E      79          2.866
LGA    R      80      R      80          5.509
LGA    L      81      L      81          7.149
LGA    N      82      N      82          5.395
LGA    I      83      I      83          6.043
LGA    G      84      G      84          6.449
LGA    E      85      E      85          4.081
LGA    P      86      P      86          6.230
LGA    L      87      L      87          3.237
LGA    L      88      L      88          6.343
LGA    V      89      V      89          3.718
LGA    Y      90      Y      90          5.732
LGA    L      91      L      91          8.459
LGA    R      92      R      92          7.442
LGA    R      93      R      93          3.212
LGA    Q      94      Q      94          5.549
LGA    D      95      D      95          3.767
LGA    L      96      L      96          3.725
LGA    P      97      P      97          3.844
LGA    E      98      E      98          3.997
LGA    I      99      I      99          3.122
LGA    T     100      T     100          2.839
LGA    A     101      A     101          3.992
LGA    Q     102      Q     102          6.250
LGA    R     103      R     103          7.712

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  103  103    4.0     23    3.00    26.214    21.746     0.743

LGA_LOCAL      RMSD =  2.996  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 12.560  Number of atoms =  103 
Std_ALL_ATOMS  RMSD = 11.719  (standard rmsd on all 103 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.792239 * X  +   0.113246 * Y  +  -0.599610 * Z  +  15.511861
  Y_new =   0.187237 * X  +   0.890113 * Y  +   0.415500 * Z  +   7.722147
  Z_new =   0.580775 * X  +  -0.441445 * Y  +   0.683979 * Z  + -15.549444 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.573140    2.568453  [ DEG:   -32.8385    147.1615 ]
  Theta =  -0.619680   -2.521913  [ DEG:   -35.5051   -144.4949 ]
  Phi   =   0.232081   -2.909512  [ DEG:    13.2972   -166.7028 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0314TS599_2-D1                               
REMARK     2: T0314_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0314TS599_2-D1.T0314_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  103  103   4.0   23   3.00  21.746    11.72
REMARK  ---------------------------------------------------------- 
MOLECULE T0314TS599_2-D1
PFRMAT TS                                                                       
TARGET T0314                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       4.716   2.011   3.006  1.00  0.00              
ATOM      2  CA  SER     2       7.343   4.959   1.573  1.00  0.00              
ATOM      3  CA  ILE     3       6.261   6.594  -1.523  1.00  0.00              
ATOM      4  CA  THR     4       4.189   9.766  -2.431  1.00  0.00              
ATOM      5  CA  SER     5       4.317  11.083  -5.935  1.00  0.00              
ATOM      6  CA  THR     6       6.418  14.066  -4.974  1.00  0.00              
ATOM      7  CA  ASP     7       9.148  11.795  -3.521  1.00  0.00              
ATOM      8  CA  ILE     8       9.457   9.508  -6.494  1.00  0.00              
ATOM      9  CA  CYS     9       9.618  12.395  -8.930  1.00  0.00              
ATOM     10  CA  GLN    10      12.318  14.173  -6.864  1.00  0.00              
ATOM     11  CA  ALA    11      14.534  11.171  -6.433  1.00  0.00              
ATOM     12  CA  ALA    12      14.324  10.125 -10.038  1.00  0.00              
ATOM     13  CA  ASP    13      15.158  13.592 -11.253  1.00  0.00              
ATOM     14  CA  ALA    14      18.180  13.939  -9.004  1.00  0.00              
ATOM     15  CA  LEU    15      19.638  10.545 -10.002  1.00  0.00              
ATOM     16  CA  LYS    16      19.184  11.293 -13.655  1.00  0.00              
ATOM     17  CA  GLY    17      20.844  14.678 -13.504  1.00  0.00              
ATOM     18  CA  PHE    18      23.841  13.368 -11.683  1.00  0.00              
ATOM     19  CA  VAL    19      24.777  10.336 -13.693  1.00  0.00              
ATOM     20  CA  GLY    20      23.036   7.040 -13.587  1.00  0.00              
ATOM     21  CA  PHE    21      25.066   3.782 -13.579  1.00  0.00              
ATOM     22  CA  ASN    22      23.403   0.585 -14.288  1.00  0.00              
ATOM     23  CA  ARG    23      25.327  -2.232 -12.793  1.00  0.00              
ATOM     24  CA  LYS    24      23.340  -5.184 -14.155  1.00  0.00              
ATOM     25  CA  THR    25      23.201  -4.212 -17.794  1.00  0.00              
ATOM     26  CA  GLY    26      26.596  -2.376 -17.991  1.00  0.00              
ATOM     27  CA  ARG    27      25.013   0.789 -19.132  1.00  0.00              
ATOM     28  CA  TYR    28      26.372   4.202 -18.080  1.00  0.00              
ATOM     29  CA  ILE    29      24.062   7.117 -18.371  1.00  0.00              
ATOM     30  CA  VAL    30      25.444  10.600 -18.683  1.00  0.00              
ATOM     31  CA  ARG    31      23.116  13.530 -18.661  1.00  0.00              
ATOM     32  CA  PHE    32      24.016  16.769 -20.484  1.00  0.00              
ATOM     33  CA  SER    33      21.905  19.806 -19.910  1.00  0.00              
ATOM     34  CA  GLU    34      21.141  21.797 -23.019  1.00  0.00              
ATOM     35  CA  ASP    35      24.072  24.253 -22.853  1.00  0.00              
ATOM     36  CA  SER    36      26.792  21.538 -22.973  1.00  0.00              
ATOM     37  CA  PHE    37      25.308  19.347 -25.612  1.00  0.00              
ATOM     38  CA  GLY    38      26.131  15.676 -25.806  1.00  0.00              
ATOM     39  CA  MET    39      23.606  13.670 -27.858  1.00  0.00              
ATOM     40  CA  ASP    40      23.567   9.892 -27.798  1.00  0.00              
ATOM     41  CA  VAL    41      20.349   8.485 -29.180  1.00  0.00              
ATOM     42  CA  ALA    42      19.981   5.044 -27.738  1.00  0.00              
ATOM     43  CA  ASP    43      18.061   1.961 -28.258  1.00  0.00              
ATOM     44  CA  ASP    44      14.518   3.291 -28.421  1.00  0.00              
ATOM     45  CA  SER    45      14.994   6.263 -26.193  1.00  0.00              
ATOM     46  CA  ILE    46      14.738   9.292 -28.417  1.00  0.00              
ATOM     47  CA  THR    47      16.542  12.057 -26.641  1.00  0.00              
ATOM     48  CA  PRO    48      15.093  15.585 -26.641  1.00  0.00              
ATOM     49  CA  THR    49      17.811  18.002 -27.575  1.00  0.00              
ATOM     50  CA  SER    50      17.381  20.323 -24.589  1.00  0.00              
ATOM     51  CA  GLU    51      18.232  17.263 -22.522  1.00  0.00              
ATOM     52  CA  PHE    52      21.010  15.298 -24.098  1.00  0.00              
ATOM     53  CA  VAL    53      21.677  11.842 -23.063  1.00  0.00              
ATOM     54  CA  TRP    54      25.127  10.471 -23.482  1.00  0.00              
ATOM     55  CA  SER    55      25.627   6.873 -23.273  1.00  0.00              
ATOM     56  CA  SER    56      29.168   5.473 -22.703  1.00  0.00              
ATOM     57  CA  VAL    57      28.902   1.812 -22.004  1.00  0.00              
ATOM     58  CA  ARG    58      31.627   0.147 -23.945  1.00  0.00              
ATOM     59  CA  ASP    59      33.327  -1.973 -21.347  1.00  0.00              
ATOM     60  CA  ASP    60      30.249  -3.511 -19.625  1.00  0.00              
ATOM     61  CA  VAL    61      28.096  -4.208 -22.707  1.00  0.00              
ATOM     62  CA  MET    62      24.581  -3.076 -23.331  1.00  0.00              
ATOM     63  CA  ARG    63      22.256  -4.821 -25.848  1.00  0.00              
ATOM     64  CA  LEU    64      19.482  -2.321 -26.235  1.00  0.00              
ATOM     65  CA  GLY    65      15.946  -3.437 -27.157  1.00  0.00              
ATOM     66  CA  ARG    66      13.125  -1.129 -26.018  1.00  0.00              
ATOM     67  CA  GLU    67      11.593  -3.538 -23.520  1.00  0.00              
ATOM     68  CA  GLN    68      15.080  -4.119 -22.039  1.00  0.00              
ATOM     69  CA  LEU    69      15.990  -0.446 -21.659  1.00  0.00              
ATOM     70  CA  GLN    70      12.670   0.149 -19.924  1.00  0.00              
ATOM     71  CA  ILE    71      13.424  -2.856 -17.652  1.00  0.00              
ATOM     72  CA  LEU    72      16.932  -1.656 -16.839  1.00  0.00              
ATOM     73  CA  LEU    73      15.603   1.842 -15.930  1.00  0.00              
ATOM     74  CA  GLU    74      12.490   1.066 -13.824  1.00  0.00              
ATOM     75  CA  GLN    75      14.331  -1.409 -11.583  1.00  0.00              
ATOM     76  CA  ASN    76      17.300   0.943 -11.202  1.00  0.00              
ATOM     77  CA  ILE    77      15.492   4.131 -10.203  1.00  0.00              
ATOM     78  CA  ASN    78      13.472   2.303  -7.532  1.00  0.00              
ATOM     79  CA  GLU    79      16.599   0.722  -6.108  1.00  0.00              
ATOM     80  CA  ARG    80      18.822   3.836  -6.088  1.00  0.00              
ATOM     81  CA  LEU    81      16.102   5.695  -4.173  1.00  0.00              
ATOM     82  CA  ASN    82      14.196   3.407  -1.761  1.00  0.00              
ATOM     83  CA  ILE    83      10.556   4.045  -2.359  1.00  0.00              
ATOM     84  CA  GLY    84       8.573   1.334  -0.665  1.00  0.00              
ATOM     85  CA  GLU    85       5.397   1.337  -2.678  1.00  0.00              
ATOM     86  CA  PRO    86       4.799   0.784  -6.353  1.00  0.00              
ATOM     87  CA  LEU    87       5.161   4.076  -8.247  1.00  0.00              
ATOM     88  CA  LEU    88       1.959   4.048 -10.328  1.00  0.00              
ATOM     89  CA  VAL    89      -0.199   3.000  -7.361  1.00  0.00              
ATOM     90  CA  TYR    90       1.208   5.329  -4.677  1.00  0.00              
ATOM     91  CA  LEU    91       0.822   8.227  -7.150  1.00  0.00              
ATOM     92  CA  ARG    92      -2.611   7.573  -8.654  1.00  0.00              
ATOM     93  CA  ARG    93      -2.251   6.703 -12.353  1.00  0.00              
ATOM     94  CA  GLN    94      -3.786   9.971 -13.626  1.00  0.00              
ATOM     95  CA  ASP    95      -1.579  12.126 -11.394  1.00  0.00              
ATOM     96  CA  LEU    96       1.861  10.900 -12.512  1.00  0.00              
ATOM     97  CA  PRO    97       2.002  12.961 -15.732  1.00  0.00              
ATOM     98  CA  GLU    98       1.001  15.969 -13.631  1.00  0.00              
ATOM     99  CA  ILE    99       3.695  15.447 -10.943  1.00  0.00              
ATOM    100  CA  THR   100       6.338  15.080 -13.671  1.00  0.00              
ATOM    101  CA  ALA   101       5.088  18.195 -15.422  1.00  0.00              
ATOM    102  CA  GLN   102       5.057  20.438 -12.327  1.00  0.00              
ATOM    103  CA  ARG   103       8.651  19.750 -11.468  1.00  0.00              
TER                                                                             
END
