
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0318TS168_2-D1
# Molecule2: number of CA atoms  154 ( 1200),  selected  154 , name T0318_D1.pdb
# PARAMETERS: T0318TS168_2-D1.T0318_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        90 - 127         5.00    16.68
  LONGEST_CONTINUOUS_SEGMENT:    38        91 - 128         4.96    16.86
  LCS_AVERAGE:     18.23

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       118 - 133         1.84    26.11
  LCS_AVERAGE:      6.08

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       118 - 131         0.91    26.63
  LONGEST_CONTINUOUS_SEGMENT:    14       119 - 132         0.77    26.79
  LCS_AVERAGE:      3.90

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     T       2     T       2      4    5   11     0    3    4    6    8    8   11   12   13   15   31   36   41   44   48   52   63   64   68   73 
LCS_GDT     Q       3     Q       3      4    5   11     3    3    4    4    4   12   16   16   19   27   34   42   48   54   60   65   69   73   77   83 
LCS_GDT     V       4     V       4      4    6   11     3    3    4    4    5   12   16   20   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     L       5     L       5      4    6   15     3    6    8   10   13   16   19   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     V       6     V       6      4    6   16     3    4    8   10   13   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     R       7     R       7      4    6   17     3    3    5    8    9   13   17   22   28   31   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     N       8     N       8      4    8   17     2    3    5    8    9   10   15   20   23   29   33   41   45   51   55   64   69   73   77   83 
LCS_GDT     G       9     G       9      4    8   17     4    5    5    8    9   10   12   13   15   18   26   30   32   35   44   49   56   56   64   71 
LCS_GDT     I      10     I      10      4    8   17     4    4    5    8    9   13   16   20   25   28   29   33   36   37   39   42   45   51   64   66 
LCS_GDT     Q      11     Q      11      4    8   17     4    5    5    7   12   15   19   21   25   28   29   33   36   37   39   40   43   45   50   54 
LCS_GDT     A      12     A      12      4    8   17     4    5    5    7    7   10   12   15   24   28   29   30   33   36   39   40   41   43   45   47 
LCS_GDT     V      13     V      13      5    8   17     3    5    5    7    7   10   12   13   15   17   19   22   22   23   25   28   28   33   36   38 
LCS_GDT     G      14     G      14      5    8   18     3    5    5    7    7   10   12   13   14   17   18   22   22   23   25   28   28   28   32   35 
LCS_GDT     D      15     D      15      5    8   18     3    5    5    6    7   10   12   13   15   17   19   22   22   23   25   28   28   30   33   35 
LCS_GDT     G      16     G      16      5    8   18     3    5    5    6    8    9   10   12   15   16   19   22   22   23   25   28   28   30   36   40 
LCS_GDT     L      17     L      17      5    8   18     3    5    6    7    8    9   10   11   13   15   19   19   21   23   24   28   28   30   36   40 
LCS_GDT     T      18     T      18      5    8   18     3    3    6    7    8    9   10   11   13   15   19   19   21   22   26   28   28   31   34   40 
LCS_GDT     S      19     S      19      5    8   18     3    3    6    7    8    9   10   11   13   15   18   18   21   22   26   28   28   31   34   37 
LCS_GDT     L      20     L      20      5    8   18     0    3    6    7    8    8    9   10   13   15   18   18   21   22   26   37   40   42   44   54 
LCS_GDT     I      21     I      21      5    8   18     3    3    6    7    8    8    9   10   14   22   27   30   32   38   41   43   49   54   60   62 
LCS_GDT     I      22     I      22      4    8   18     3    4    6    7    7    9   11   16   19   23   29   34   41   44   48   52   60   62   71   77 
LCS_GDT     V      23     V      23      4    8   21     3    4    5    7    8    8    9    9   17   20   23   27   31   44   48   52   57   62   67   75 
LCS_GDT     G      24     G      24      4    6   21     3    4    4    5    8    8    8   10   12   16   23   27   35   36   43   52   57   62   71   75 
LCS_GDT     K      25     K      25      4    6   21     3    4    4    5    6    7    8   13   14   15   16   22   27   31   32   42   46   53   62   69 
LCS_GDT     K      26     K      26      3    6   21     3    3    5    5    6    8   11   13   14   15   20   27   29   36   39   48   54   62   71   75 
LCS_GDT     S      27     S      27      3    6   21     3    3    4    5    8    8   11   13   14   15   16   17   27   36   39   48   52   62   71   75 
LCS_GDT     V      28     V      28      3    7   21     3    3    4    5    8    8    9   13   14   15   16   17   19   20   22   32   37   56   67   75 
LCS_GDT     L      29     L      29      3    7   21     3    3    4    5    8    8    9   10   13   15   16   17   19   20   22   32   35   47   67   74 
LCS_GDT     K      30     K      30      5    7   21     3    5    5    5    8    8   11   13   14   15   16   17   19   20   22   32   37   47   67   76 
LCS_GDT     N      31     N      31      5    7   21     3    5    5    5    6    8   11   13   14   15   16   17   19   20   24   30   33   36   39   40 
LCS_GDT     V      32     V      32      5    7   21     3    5    5    5    6    8   11   13   14   15   19   23   27   30   34   35   37   39   40   42 
LCS_GDT     T      33     T      33      5    7   23     3    5    5    5    8    8   11   13   15   17   20   23   28   31   34   36   38   39   40   42 
LCS_GDT     F      34     F      34      5    7   25     3    5    5    5    7    9   11   13   15   17   19   22   28   31   34   36   38   39   64   66 
LCS_GDT     E      35     E      35      4    6   25     3    4    5    5    8   10   11   14   15   26   26   31   31   31   32   36   49   53   56   61 
LCS_GDT     G      36     G      36      4    6   25     3    4    5    5    8   10   11   14   18   21   24   25   27   30   32   36   38   39   47   52 
LCS_GDT     K      37     K      37      4    5   25     3    4    5    5    8   10   11   14   17   21   24   25   28   31   34   36   38   39   41   44 
LCS_GDT     F      38     F      38      4    8   25     3    3    4    6    7   10   11   14   17   21   24   25   28   31   34   36   38   39   48   49 
LCS_GDT     K      39     K      39      6    8   25     4    5    7    7   10   10   11   14   15   19   24   25   28   31   34   45   48   52   56   60 
LCS_GDT     E      40     E      40      6    8   25     4    5    7    7   10   10   11   14   18   21   24   25   28   31   34   36   38   40   45   53 
LCS_GDT     V      41     V      41      6    8   25     4    5    7    7   10   12   15   17   18   21   24   25   28   31   34   40   42   45   52   66 
LCS_GDT     A      42     A      42      6    8   26     4    5    7    7   10   12   15   17   18   21   25   26   30   35   40   48   52   61   68   72 
LCS_GDT     Q      43     Q      43      6    8   26     4    5    7    7   10   12   15   17   18   21   25   26   28   31   35   43   52   60   62   66 
LCS_GDT     K      44     K      44      6    8   26     4    4    7    7   10   12   15   17   18   21   24   26   28   31   35   40   42   50   52   54 
LCS_GDT     F      45     F      45      6    8   26     4    4    7    7   10   12   15   17   18   21   25   26   30   37   42   46   52   60   67   73 
LCS_GDT     V      46     V      46      4    8   26     3    4    5    5    8   12   15   17   18   21   24   25   30   37   42   46   54   63   72   79 
LCS_GDT     T      47     T      47      4    8   26     3    4    5    6    9   12   15   17   18   21   24   25   30   37   42   46   52   63   67   76 
LCS_GDT     D      48     D      48      4    8   26     3    4    5    6    9   12   15   17   18   21   25   31   39   44   51   59   66   70   77   82 
LCS_GDT     G      49     G      49      4    8   26     3    4    5    7    9   12   16   19   24   31   35   41   48   51   56   60   66   73   77   83 
LCS_GDT     D      50     D      50      6    6   26     3    4    7   10   13   16   19   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     S      51     S      51      6    6   26     5    5    6    7    9   12   15   20   24   31   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     W      52     W      52      6    6   26     5    6    8   10   13   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     N      53     N      53      6    6   26     5    5    6    7    8   12   17   23   28   31   37   42   47   54   60   65   69   73   77   83 
LCS_GDT     S      54     S      54      6    6   26     5    5    6    7    8   12   15   20   28   31   33   41   47   54   60   65   69   73   77   83 
LCS_GDT     M      55     M      55      6    6   26     5    5    6    7    9   13   17   22   28   31   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     I      56     I      56      3    6   26     3    3    4    7    9   13   19   23   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     S      57     S      57      3    7   26     3    3    4    6    7    9   17   23   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     R      58     R      58      4    8   26     3    4    5    8   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     I      59     I      59      4    8   26     3    4    5    6    8   12   16   21   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     P      60     P      60      4    8   26     3    4    5    5    8    9   10   11   13   18   21   29   37   51   55   58   63   72   76   79 
LCS_GDT     A      61     A      61      4    8   26     3    4    5    5    8    9   10   11   16   19   21   24   28   31   34   36   38   53   59   71 
LCS_GDT     S      62     S      62      4    8   26     3    3    5    6    8    9   10   14   16   19   21   24   28   31   34   36   38   39   40   42 
LCS_GDT     G      63     G      63      3    8   26     3    3    5    6    8    9   10   14   16   19   21   24   28   31   34   36   43   60   67   72 
LCS_GDT     R      64     R      64      3    8   26     3    3    5    6    8    9   10   14   16   19   21   23   27   31   34   36   50   55   61   67 
LCS_GDT     H      65     H      65      3    8   26     3    3    5    6    8    9   10   14   16   28   31   36   40   47   52   60   66   70   77   83 
LCS_GDT     P      66     P      66      4    6   26     3    3    4    5    6    9   14   19   25   28   33   39   43   50   53   60   66   71   77   83 
LCS_GDT     L      67     L      67      4    6   26     3    3    5    5    8   10   14   17   21   27   31   36   41   47   52   58   65   70   77   83 
LCS_GDT     H      68     H      68      4    6   26     3    3    6    7    8    9   11   14   17   23   26   29   35   41   44   53   59   67   76   81 
LCS_GDT     Y      69     Y      69      4    6   17     3    3    4    5    6    8   11   14   17   26   29   34   36   41   46   53   60   69   77   81 
LCS_GDT     E      70     E      70      4    5   13     3    3    4    4    6    8   11   13   14   19   25   26   30   37   45   53   59   67   77   81 
LCS_GDT     L      71     L      71      4    5   13     3    3    4    5    7   10   10   12   14   19   25   26   28   36   42   48   57   63   73   81 
LCS_GDT     A      72     A      72      4    5   12     3    3    4    4    6   11   15   18   19   26   29   36   39   44   50   56   60   69   77   81 
LCS_GDT     H      73     H      73      3    6   12     2    3    4    5    7   15   19   23   27   31   36   42   48   54   60   65   69   73   77   83 
LCS_GDT     L      74     L      74      4    7   15     3    4    5    6    8   13   18   24   28   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     I      75     I      75      4    7   17     3    4    6    7    9   15   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     T      76     T      76      4    7   17     3    4    5    6   12   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     V      77     V      77      5    7   17     3    5    5    6    8   12   15   20   23   32   37   42   48   54   60   65   69   73   77   83 
LCS_GDT     P      78     P      78      5    7   23     3    5    6    9   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     D      79     D      79      5    8   23     3    5    6   10   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     A      80     A      80      5    8   23     3    5    6    9   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     S      81     S      81      5    8   23     3    5    6    8   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     S      82     S      82      4    8   23     3    4    6    8    9   12   16   16   20   27   33   41   45   51   60   65   69   73   77   83 
LCS_GDT     R      83     R      83      4    8   23     3    4    6    8    9   12   16   16   20   22   29   32   37   45   49   54   60   67   72   75 
LCS_GDT     G      84     G      84      4    8   23     3    4    6    8    9   12   16   16   20   22   26   29   34   44   48   51   56   64   69   75 
LCS_GDT     N      85     N      85      4    8   23     3    3    6    8    9   12   16   16   20   22   27   29   37   44   48   54   60   67   72   75 
LCS_GDT     T      86     T      86      4    8   26     3    3    5    6    9   13   16   16   21   27   32   41   45   51   60   65   69   73   77   83 
LCS_GDT     P      87     P      87      3    8   34     3    3    4    7    8   13   16   21   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     T      88     T      88      3   13   34     3    4    4    5    7    8   11   19   24   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     N      89     N      89     12   13   35     4    9   10   12   13   13   16   21   26   32   35   42   48   54   60   65   69   73   77   83 
LCS_GDT     A      90     A      90     12   13   38     7    9   11   12   13   13   17   22   28   31   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     H      91     H      91     12   13   38     7    9   11   12   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     S      92     S      92     12   13   38     7    9   11   12   13   13   19   23   26   32   35   41   48   54   60   65   69   73   77   83 
LCS_GDT     I      93     I      93     12   13   38     6    9   11   12   13   13   19   22   26   32   35   38   47   54   60   65   69   73   77   83 
LCS_GDT     Y      94     Y      94     12   13   38     7    9   11   12   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     K      95     K      95     12   13   38     7    9   11   12   13   13   14   20   27   31   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     E      96     E      96     12   13   38     7    9   11   12   13   13   19   23   26   32   35   38   41   44   50   65   69   73   77   83 
LCS_GDT     L      97     L      97     12   13   38     7    9   11   12   13   13   19   23   28   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     K      98     K      98     12   13   38     4    9   11   12   13   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     P      99     P      99     12   13   38     4    7   11   12   13   15   19   23   26   32   37   42   48   54   60   65   69   73   77   83 
LCS_GDT     I     100     I     100     12   13   38     4    9   11   12   13   15   19   23   26   32   35   41   47   54   60   65   69   73   77   83 
LCS_GDT     N     101     N     101      3   13   38     3    3    5    7   11   13   19   22   26   32   35   38   41   50   53   60   64   73   77   83 
LCS_GDT     Y     102     Y     102      4    6   38     4    4    5    9   12   15   19   23   26   32   35   38   42   50   53   60   64   69   77   81 
LCS_GDT     P     103     P     103      4    6   38     4    4    4    7    8   11   15   18   23   29   34   38   42   50   53   60   64   71   77   83 
LCS_GDT     E     104     E     104      4    6   38     4    4    4    5    9   11   16   22   26   29   34   38   43   50   53   60   64   69   77   81 
LCS_GDT     D     105     D     105      4   10   38     4    4    6    8    9   11   19   23   26   32   35   38   43   50   53   60   64   69   77   81 
LCS_GDT     T     106     T     106      5   10   38     3    4    6    8    8   12   18   23   26   32   35   39   43   50   53   60   64   71   77   83 
LCS_GDT     K     107     K     107      5   12   38     3    5    6   10   12   14   16   23   26   32   35   38   42   50   53   60   63   67   76   80 
LCS_GDT     N     108     N     108      5   12   38     3    5    6   10   12   14   16   23   26   32   35   38   42   50   53   60   64   69   77   81 
LCS_GDT     V     109     V     109      5   12   38     3    5    6   10   12   14   19   21   26   32   35   39   43   50   53   60   65   71   77   83 
LCS_GDT     H     110     H     110      5   12   38     4    5    6   10   12   14   19   21   26   30   35   39   43   50   53   60   65   73   77   83 
LCS_GDT     F     111     F     111      5   12   38     4    4    6   10   12   14   19   21   25   31   36   42   48   51   56   65   69   73   77   83 
LCS_GDT     V     112     V     112      4   12   38     4    4    6   10   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     L     113     L     113      4   12   38     4    5    6   10   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     F     114     F     114      4   12   38     1    4    6   10   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     A     115     A     115      4   12   38     3    5    7   10   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     E     116     E     116      4   12   38     4    4    6   10   14   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     Y     117     Y     117      4   12   38     4    6    8   10   13   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     P     118     P     118     14   16   38     4    4    6   12   15   15   19   23   26   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     D     119     D     119     14   16   38     6   12   14   14   15   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     V     120     V     120     14   16   38     5   12   14   14   15   15   19   22   26   32   34   41   47   54   60   65   69   73   77   83 
LCS_GDT     L     121     L     121     14   16   38     9   12   14   14   15   15   19   23   26   32   35   38   41   45   52   60   66   72   77   83 
LCS_GDT     S     122     S     122     14   16   38     9   12   14   14   15   15   19   23   26   32   36   42   48   54   60   65   69   73   77   83 
LCS_GDT     H     123     H     123     14   16   38     9   12   14   14   15   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     V     124     V     124     14   16   38     9   12   14   14   15   15   19   23   26   32   35   39   44   51   56   65   69   73   77   83 
LCS_GDT     A     125     A     125     14   16   38     9   12   14   14   15   15   19   23   26   32   35   38   42   45   53   59   66   71   77   83 
LCS_GDT     A     126     A     126     14   16   38     9   12   14   14   15   15   19   23   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     I     127     I     127     14   16   38     9   12   14   14   15   16   21   24   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     A     128     A     128     14   16   38     9   12   14   14   15   15   19   23   26   32   35   39   43   47   53   60   66   71   77   83 
LCS_GDT     R     129     R     129     14   16   34     9   12   14   14   15   15   19   23   26   30   34   38   41   45   52   59   66   69   74   80 
LCS_GDT     T     130     T     130     14   16   34     3   12   14   14   15   15   19   23   29   32   38   42   48   54   60   65   69   73   77   83 
LCS_GDT     F     131     F     131     14   16   34     3   12   14   14   15   15   19   23   26   32   35   39   46   50   56   60   66   73   77   83 
LCS_GDT     C     132     C     132     14   16   34     3    4   14   14   15   17   19   22   26   29   34   38   41   44   52   59   66   69   74   78 
LCS_GDT     K     133     K     133      5   16   34     3    4    7    9   10   15   19   23   26   32   35   38   41   45   52   59   66   69   74   81 
LCS_GDT     F     134     F     134      5    8   34     3    4    5    7   11   17   19   21   25   28   32   38   41   45   52   59   66   69   74   80 
LCS_GDT     S     135     S     135      5    8   34     3    5    8   10   12   17   19   21   25   28   32   37   41   44   52   59   66   69   74   78 
LCS_GDT     M     136     M     136      5    8   34     3    4    5    9   12   17   19   21   25   28   29   33   39   44   52   59   66   69   74   81 
LCS_GDT     K     137     K     137      4    8   34     3    4    5    9   12   17   19   21   25   28   30   38   41   50   56   60   66   72   77   83 
LCS_GDT     T     138     T     138      4    8   34     3    4    4    5    8    9   11   12   18   27   29   30   31   35   42   54   65   70   77   83 
LCS_GDT     S     139     S     139      4    8   34     3    4    4    5   11   17   19   21   25   28   29   34   42   52   60   65   69   73   77   83 
LCS_GDT     G     140     G     140      4    8   34     3    4    4    9   12   17   19   21   25   28   29   33   39   52   60   65   69   73   76   82 
LCS_GDT     I     141     I     141      4    6   34     3    3    4    5    9   12   19   21   25   28   32   41   47   52   60   65   69   73   77   83 
LCS_GDT     R     142     R     142      4   12   34     3    3    5    8   10   13   14   21   25   28   30   41   45   46   55   57   63   67   71   74 
LCS_GDT     E     143     E     143      4   12   34     0    3    5    7   11   17   19   21   25   28   32   41   45   51   55   58   69   73   77   82 
LCS_GDT     L     144     L     144      4   12   34     3    5    8   10   12   17   19   21   25   28   32   41   45   51   55   65   69   73   77   83 
LCS_GDT     N     145     N     145      7   12   34     3    5    7   10   12   13   16   19   25   28   32   41   45   51   55   58   69   73   77   83 
LCS_GDT     V     146     V     146      7   12   34     3    6    8   10   12   17   19   21   25   28   32   41   47   54   60   65   69   73   77   83 
LCS_GDT     N     147     N     147      7   12   34     3    6    8   10   12   17   19   21   25   28   29   34   45   51   55   60   69   72   77   83 
LCS_GDT     I     148     I     148      7   12   34     3    6    8   10   12   17   19   21   25   28   32   41   47   54   60   65   69   73   77   83 
LCS_GDT     D     149     D     149      7   12   34     3    6    8   10   12   17   19   21   25   28   29   41   45   51   55   60   65   72   76   82 
LCS_GDT     V     150     V     150      7   12   34     3    6    8   10   12   17   19   21   25   28   32   41   47   54   60   65   69   73   77   83 
LCS_GDT     V     151     V     151      7   12   34     3    6    8   10   12   17   19   21   25   28   29   34   39   47   53   57   65   72   76   82 
LCS_GDT     C     152     C     152      7   12   34     0    3    8   10   12   17   19   21   25   28   29   36   41   47   55   64   69   73   77   83 
LCS_GDT     D     153     D     153      3   12   34     0    3    4    9   12   17   19   21   25   28   32   41   45   52   59   65   69   73   77   83 
LCS_GDT     K     154     K     154      3    9   34     1    3    4    6    7   11   14   19   24   27   31   36   42   47   60   65   69   73   77   83 
LCS_GDT     L     155     L     155      3    5   32     0    3    3    3    5    5    9   11   13   14   14   20   25   27   29   52   54   61   74   81 
LCS_AVERAGE  LCS_A:   9.40  (   3.90    6.08   18.23 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     12     14     14     15     17     21     24     29     32     38     42     48     54     60     65     69     73     77     83 
GDT PERCENT_CA   5.84   7.79   9.09   9.09   9.74  11.04  13.64  15.58  18.83  20.78  24.68  27.27  31.17  35.06  38.96  42.21  44.81  47.40  50.00  53.90
GDT RMS_LOCAL    0.18   0.51   0.77   0.77   1.05   2.22   2.61   2.86   3.30   3.47   3.91   4.14   4.54   5.00   5.35   5.61   5.84   6.15   6.47   6.91
GDT RMS_ALL_CA  26.59  26.72  26.79  26.79  26.66  27.55  15.59  15.34  15.49  15.45  15.35  15.45  15.18  15.19  15.23  15.13  15.11  14.93  14.87  14.60

#      Molecule1      Molecule2       DISTANCE
LGA    T       2      T       2         14.852
LGA    Q       3      Q       3          9.333
LGA    V       4      V       4          6.453
LGA    L       5      L       5          3.855
LGA    V       6      V       6          2.852
LGA    R       7      R       7          6.388
LGA    N       8      N       8         10.400
LGA    G       9      G       9         17.682
LGA    I      10      I      10         20.842
LGA    Q      11      Q      11         26.399
LGA    A      12      A      12         32.314
LGA    V      13      V      13         33.421
LGA    G      14      G      14         39.395
LGA    D      15      D      15         43.402
LGA    G      16      G      16         42.335
LGA    L      17      L      17         38.796
LGA    T      18      T      18         32.963
LGA    S      19      S      19         28.203
LGA    L      20      L      20         22.239
LGA    I      21      I      21         18.461
LGA    I      22      I      22         12.839
LGA    V      23      V      23         12.756
LGA    G      24      G      24         12.239
LGA    K      25      K      25         14.864
LGA    K      26      K      26         13.687
LGA    S      27      S      27         13.171
LGA    V      28      V      28         14.108
LGA    L      29      L      29         16.702
LGA    K      30      K      30         15.631
LGA    N      31      N      31         19.583
LGA    V      32      V      32         21.771
LGA    T      33      T      33         24.119
LGA    F      34      F      34         24.694
LGA    E      35      E      35         30.246
LGA    G      36      G      36         35.229
LGA    K      37      K      37         36.477
LGA    F      38      F      38         29.428
LGA    K      39      K      39         27.160
LGA    E      40      E      40         29.534
LGA    V      41      V      41         24.322
LGA    A      42      A      42         20.987
LGA    Q      43      Q      43         24.558
LGA    K      44      K      44         25.158
LGA    F      45      F      45         18.946
LGA    V      46      V      46         16.472
LGA    T      47      T      47         18.509
LGA    D      48      D      48         12.668
LGA    G      49      G      49          8.098
LGA    D      50      D      50          3.722
LGA    S      51      S      51          5.325
LGA    W      52      W      52          2.871
LGA    N      53      N      53          6.169
LGA    S      54      S      54          8.495
LGA    M      55      M      55          6.237
LGA    I      56      I      56          4.367
LGA    S      57      S      57          4.839
LGA    R      58      R      58          3.444
LGA    I      59      I      59          5.506
LGA    P      60      P      60         12.407
LGA    A      61      A      61         16.538
LGA    S      62      S      62         16.581
LGA    G      63      G      63         13.278
LGA    R      64      R      64         14.060
LGA    H      65      H      65         11.037
LGA    P      66      P      66         10.094
LGA    L      67      L      67         11.723
LGA    H      68      H      68         16.276
LGA    Y      69      Y      69         13.886
LGA    E      70      E      70         13.812
LGA    L      71      L      71         16.088
LGA    A      72      A      72         12.489
LGA    H      73      H      73          5.133
LGA    L      74      L      74          3.800
LGA    I      75      I      75          3.412
LGA    T      76      T      76          2.456
LGA    V      77      V      77          4.917
LGA    P      78      P      78          3.553
LGA    D      79      D      79          2.621
LGA    A      80      A      80          3.129
LGA    S      81      S      81          3.410
LGA    S      82      S      82          8.359
LGA    R      83      R      83         13.519
LGA    G      84      G      84         14.824
LGA    N      85      N      85         11.772
LGA    T      86      T      86          7.907
LGA    P      87      P      87          6.063
LGA    T      88      T      88          6.909
LGA    N      89      N      89          7.382
LGA    A      90      A      90          5.601
LGA    H      91      H      91          2.097
LGA    S      92      S      92          7.326
LGA    I      93      I      93          7.216
LGA    Y      94      Y      94          1.639
LGA    K      95      K      95          6.464
LGA    E      96      E      96          9.094
LGA    L      97      L      97          5.521
LGA    K      98      K      98          2.586
LGA    P      99      P      99          7.409
LGA    I     100      I     100          7.715
LGA    N     101      N     101          9.994
LGA    Y     102      Y     102         11.508
LGA    P     103      P     103         10.404
LGA    E     104      E     104         11.888
LGA    D     105      D     105         12.500
LGA    T     106      T     106          9.564
LGA    K     107      K     107         13.852
LGA    N     108      N     108         12.627
LGA    V     109      V     109          8.323
LGA    H     110      H     110          8.014
LGA    F     111      F     111          5.565
LGA    V     112      V     112          2.841
LGA    L     113      L     113          1.596
LGA    F     114      F     114          2.335
LGA    A     115      A     115          0.677
LGA    E     116      E     116          3.232
LGA    Y     117      Y     117          3.420
LGA    P     118      P     118          5.480
LGA    D     119      D     119          2.378
LGA    V     120      V     120          8.101
LGA    L     121      L     121          9.619
LGA    S     122      S     122          5.657
LGA    H     123      H     123          1.687
LGA    V     124      V     124          7.405
LGA    A     125      A     125          9.064
LGA    A     126      A     126          5.259
LGA    I     127      I     127          2.396
LGA    A     128      A     128          8.819
LGA    R     129      R     129         10.190
LGA    T     130      T     130          5.356
LGA    F     131      F     131          6.872
LGA    C     132      C     132         12.638
LGA    K     133      K     133         11.720
LGA    F     134      F     134         12.502
LGA    S     135      S     135         13.608
LGA    M     136      M     136         12.437
LGA    K     137      K     137          9.285
LGA    T     138      T     138         11.300
LGA    S     139      S     139         10.425
LGA    G     140      G     140         12.424
LGA    I     141      I     141         11.386
LGA    R     142      R     142         15.272
LGA    E     143      E     143         12.607
LGA    L     144      L     144         11.003
LGA    N     145      N     145         12.470
LGA    V     146      V     146          9.935
LGA    N     147      N     147         12.474
LGA    I     148      I     148          9.816
LGA    D     149      D     149         13.264
LGA    V     150      V     150          9.896
LGA    V     151      V     151         12.587
LGA    C     152      C     152         10.691
LGA    D     153      D     153         10.449
LGA    K     154      K     154          9.730
LGA    L     155      L     155         12.791

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     24    2.86    18.669    14.816     0.810

LGA_LOCAL      RMSD =  2.863  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 15.343  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 13.380  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.047691 * X  +   0.062062 * Y  +   0.996932 * Z  +  48.907070
  Y_new =   0.112861 * X  +   0.992011 * Y  +  -0.056356 * Z  +  37.114956
  Z_new =  -0.992466 * X  +   0.109827 * Y  +  -0.054314 * Z  +  17.664732 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.030072   -1.111521  [ DEG:   116.3146    -63.6854 ]
  Theta =   1.447965    1.693628  [ DEG:    82.9623     97.0377 ]
  Phi   =   1.970604   -1.170989  [ DEG:   112.9073    -67.0927 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0318TS168_2-D1                               
REMARK     2: T0318_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0318TS168_2-D1.T0318_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   24   2.86  14.816    13.38
REMARK  ---------------------------------------------------------- 
MOLECULE T0318TS168_2-D1
PFRMAT TS
TARGET T0318
MODEL 2
PARENT N/A
ATOM      2  CA  THR     2      27.790  38.120   3.442  1.00 25.00           C
ATOM      3  CA  GLN     3      29.779  38.443   6.665  1.00 25.00           C
ATOM      4  CA  VAL     4      31.651  39.005   9.873  1.00 25.00           C
ATOM      5  CA  LEU     5      30.661  37.825  13.310  1.00 25.00           C
ATOM      6  CA  VAL     6      28.293  37.374  16.256  1.00 25.00           C
ATOM      7  CA  ARG     7      25.353  36.079  14.217  1.00 25.00           C
ATOM      8  CA  ASN     8      21.965  35.287  12.802  1.00 25.00           C
ATOM      9  CA  GLY     9      18.229  35.140  11.902  1.00 25.00           C
ATOM     10  CA  ILE    10      16.907  34.111  15.345  1.00 25.00           C
ATOM     11  CA  GLN    11      13.179  33.531  14.587  1.00 25.00           C
ATOM     12  CA  ALA    12      10.550  31.207  15.977  1.00 25.00           C
ATOM     13  CA  VAL    13      10.041  30.483  19.735  1.00 25.00           C
ATOM     14  CA  GLY    14       8.300  28.138  22.222  1.00 25.00           C
ATOM     15  CA  ASP    15       9.622  26.281  25.196  1.00 25.00           C
ATOM     16  CA  GLY    16      13.053  25.220  26.576  1.00 25.00           C
ATOM     17  CA  LEU    17      16.817  25.710  26.802  1.00 25.00           C
ATOM     18  CA  THR    18      20.133  26.275  28.581  1.00 25.00           C
ATOM     19  CA  SER    19      23.609  26.662  27.240  1.00 25.00           C
ATOM     20  CA  LEU    20      27.347  27.264  27.241  1.00 25.00           C
ATOM     21  CA  ILE    21      31.172  27.442  27.128  1.00 25.00           C
ATOM     22  CA  ILE    22      34.561  29.128  27.647  1.00 25.00           C
ATOM     23  CA  VAL    23      36.248  29.744  31.066  1.00 25.00           C
ATOM     24  CA  GLY    24      36.162  28.962  34.796  1.00 25.00           C
ATOM     25  CA  LYS    25      36.453  26.270  37.470  1.00 25.00           C
ATOM     26  CA  LYS    26      36.184  26.395  41.241  1.00 25.00           C
ATOM     27  CA  SER    27      34.602  23.716  43.455  1.00 25.00           C
ATOM     28  CA  VAL    28      32.911  26.657  45.141  1.00 25.00           C
ATOM     29  CA  LEU    29      30.731  28.287  47.824  1.00 25.00           C
ATOM     30  CA  LYS    30      33.308  26.619  50.149  1.00 25.00           C
ATOM     31  CA  ASN    31      35.153  26.743  53.513  1.00 25.00           C
ATOM     32  CA  VAL    32      37.927  29.297  52.940  1.00 25.00           C
ATOM     33  CA  THR    33      35.654  31.908  54.607  1.00 25.00           C
ATOM     34  CA  PHE    34      34.949  35.356  53.165  1.00 25.00           C
ATOM     35  CA  GLU    35      33.365  38.666  54.197  1.00 25.00           C
ATOM     36  CA  GLY    36      30.051  40.447  53.891  1.00 25.00           C
ATOM     37  CA  LYS    37      26.466  40.073  52.813  1.00 25.00           C
ATOM     38  CA  PHE    38      27.602  40.637  49.241  1.00 25.00           C
ATOM     39  CA  LYS    39      27.487  40.899  45.481  1.00 25.00           C
ATOM     40  CA  GLU    40      25.683  38.492  43.110  1.00 25.00           C
ATOM     41  CA  VAL    41      27.737  39.816  40.163  1.00 25.00           C
ATOM     42  CA  ALA    42      30.967  39.337  42.165  1.00 25.00           C
ATOM     43  CA  GLN    43      29.930  35.752  43.026  1.00 25.00           C
ATOM     44  CA  LYS    44      29.199  35.050  39.333  1.00 25.00           C
ATOM     45  CA  PHE    45      32.628  36.452  38.363  1.00 25.00           C
ATOM     46  CA  VAL    46      33.765  33.023  37.050  1.00 25.00           C
ATOM     47  CA  THR    47      35.667  31.577  40.054  1.00 25.00           C
ATOM     48  CA  ASP    48      39.258  31.905  38.842  1.00 25.00           C
ATOM     49  CA  GLY    49      42.209  33.551  40.650  1.00 25.00           C
ATOM     50  CA  ASP    50      44.114  36.620  39.434  1.00 25.00           C
ATOM     51  CA  SER    51      41.376  37.411  36.958  1.00 25.00           C
ATOM     52  CA  TRP    52      43.175  40.729  36.308  1.00 25.00           C
ATOM     53  CA  ASN    53      45.127  39.134  33.426  1.00 25.00           C
ATOM     54  CA  SER    54      41.870  37.771  31.942  1.00 25.00           C
ATOM     55  CA  MET    55      40.269  41.240  32.205  1.00 25.00           C
ATOM     56  CA  ILE    56      37.307  39.201  33.591  1.00 25.00           C
ATOM     57  CA  SER    57      36.388  39.650  37.248  1.00 25.00           C
ATOM     58  CA  ARG    58      39.080  41.139  39.494  1.00 25.00           C
ATOM     59  CA  ILE    59      40.515  44.672  38.930  1.00 25.00           C
ATOM     60  CA  PRO    60      44.037  44.075  40.260  1.00 25.00           C
ATOM     61  CA  ALA    61      44.142  46.617  43.065  1.00 25.00           C
ATOM     62  CA  SER    62      42.340  49.840  43.919  1.00 25.00           C
ATOM     63  CA  GLY    63      39.083  51.782  43.840  1.00 25.00           C
ATOM     64  CA  ARG    64      37.717  49.052  46.073  1.00 25.00           C
ATOM     65  CA  HIS    65      35.946  46.079  44.471  1.00 25.00           C
ATOM     66  CA  PRO    66      37.060  47.598  41.198  1.00 25.00           C
ATOM     67  CA  LEU    67      34.932  44.829  39.573  1.00 25.00           C
ATOM     68  CA  HIS    68      31.707  46.848  39.136  1.00 25.00           C
ATOM     69  CA  TYR    69      33.530  49.309  36.837  1.00 25.00           C
ATOM     70  CA  GLU    70      34.906  46.396  34.768  1.00 25.00           C
ATOM     71  CA  LEU    71      31.390  44.906  34.481  1.00 25.00           C
ATOM     72  CA  ALA    72      30.019  48.297  33.347  1.00 25.00           C
ATOM     73  CA  HIS    73      32.795  48.569  30.723  1.00 25.00           C
ATOM     74  CA  LEU    74      31.986  45.044  29.464  1.00 25.00           C
ATOM     75  CA  ILE    75      32.136  41.403  30.508  1.00 25.00           C
ATOM     76  CA  THR    76      28.777  41.155  32.357  1.00 25.00           C
ATOM     77  CA  VAL    77      29.234  37.347  32.621  1.00 25.00           C
ATOM     78  CA  PRO    78      26.876  37.838  35.523  1.00 25.00           C
ATOM     79  CA  ASP    79      24.089  35.417  34.497  1.00 25.00           C
ATOM     80  CA  ALA    80      22.081  35.157  37.678  1.00 25.00           C
ATOM     81  CA  SER    81      20.801  38.626  36.856  1.00 25.00           C
ATOM     82  CA  SER    82      22.002  41.812  38.587  1.00 25.00           C
ATOM     83  CA  ARG    83      22.067  45.610  38.049  1.00 25.00           C
ATOM     84  CA  GLY    84      23.121  47.716  35.029  1.00 25.00           C
ATOM     85  CA  ASN    85      24.529  44.942  32.834  1.00 25.00           C
ATOM     86  CA  THR    86      21.812  42.302  33.324  1.00 25.00           C
ATOM     87  CA  PRO    87      18.601  42.761  31.230  1.00 25.00           C
ATOM     88  CA  THR    88      16.998  43.961  27.966  1.00 25.00           C
ATOM     89  CA  ASN    89      16.779  47.523  29.354  1.00 25.00           C
ATOM     90  CA  ALA    90      20.468  47.379  30.375  1.00 25.00           C
ATOM     91  CA  HIS    91      21.415  46.159  26.871  1.00 25.00           C
ATOM     92  CA  SER    92      19.408  49.020  25.305  1.00 25.00           C
ATOM     93  CA  ILE    93      21.167  51.538  27.592  1.00 25.00           C
ATOM     94  CA  TYR    94      24.573  50.095  26.603  1.00 25.00           C
ATOM     95  CA  LYS    95      23.642  50.370  22.898  1.00 25.00           C
ATOM     96  CA  GLU    96      22.569  54.010  23.413  1.00 25.00           C
ATOM     97  CA  LEU    97      25.883  54.764  25.177  1.00 25.00           C
ATOM     98  CA  LYS    98      27.814  53.155  22.289  1.00 25.00           C
ATOM     99  CA  PRO    99      25.840  55.253  19.766  1.00 25.00           C
ATOM    100  CA  ILE   100      26.604  58.426  21.769  1.00 25.00           C
ATOM    101  CA  ASN   101      25.063  59.718  25.018  1.00 25.00           C
ATOM    102  CA  TYR   102      28.633  60.366  26.223  1.00 25.00           C
ATOM    103  CA  PRO   103      31.898  58.437  25.932  1.00 25.00           C
ATOM    104  CA  GLU   104      34.692  60.805  26.958  1.00 25.00           C
ATOM    105  CA  ASP   105      35.975  62.359  23.768  1.00 25.00           C
ATOM    106  CA  THR   106      36.219  59.320  21.567  1.00 25.00           C
ATOM    107  CA  LYS   107      37.708  57.550  24.646  1.00 25.00           C
ATOM    108  CA  ASN   108      38.230  53.934  25.543  1.00 25.00           C
ATOM    109  CA  VAL   109      35.738  51.270  24.478  1.00 25.00           C
ATOM    110  CA  HIS   110      35.931  47.557  25.348  1.00 25.00           C
ATOM    111  CA  PHE   111      35.949  43.849  25.810  1.00 25.00           C
ATOM    112  CA  VAL   112      34.650  41.802  22.911  1.00 25.00           C
ATOM    113  CA  LEU   113      32.950  38.504  23.643  1.00 25.00           C
ATOM    114  CA  PHE   114      29.970  36.497  24.981  1.00 25.00           C
ATOM    115  CA  ALA   115      27.634  34.250  26.950  1.00 25.00           C
ATOM    116  CA  GLU   116      24.948  33.088  24.520  1.00 25.00           C
ATOM    117  CA  TYR   117      22.105  31.741  26.558  1.00 25.00           C
ATOM    118  CA  PRO   118      22.670  34.416  29.134  1.00 25.00           C
ATOM    119  CA  ASP   119      20.694  36.696  26.776  1.00 25.00           C
ATOM    120  CA  VAL   120      21.689  39.753  28.857  1.00 25.00           C
ATOM    121  CA  LEU   121      25.362  38.674  28.730  1.00 25.00           C
ATOM    122  CA  SER   122      25.133  38.255  24.930  1.00 25.00           C
ATOM    123  CA  HIS   123      23.582  41.742  24.613  1.00 25.00           C
ATOM    124  CA  VAL   124      26.391  43.213  26.760  1.00 25.00           C
ATOM    125  CA  ALA   125      29.008  41.479  24.568  1.00 25.00           C
ATOM    126  CA  ALA   126      27.331  42.873  21.420  1.00 25.00           C
ATOM    127  CA  ILE   127      27.338  46.386  22.942  1.00 25.00           C
ATOM    128  CA  ALA   128      31.054  46.034  23.799  1.00 25.00           C
ATOM    129  CA  ARG   129      31.798  44.906  20.216  1.00 25.00           C
ATOM    130  CA  THR   130      29.865  47.913  18.841  1.00 25.00           C
ATOM    131  CA  PHE   131      31.834  50.260  21.139  1.00 25.00           C
ATOM    132  CA  CYS   132      35.125  48.702  19.953  1.00 25.00           C
ATOM    133  CA  LYS   133      34.055  49.157  16.304  1.00 25.00           C
ATOM    134  CA  PHE   134      33.178  52.821  16.994  1.00 25.00           C
ATOM    135  CA  SER   135      35.567  55.383  18.472  1.00 25.00           C
ATOM    136  CA  MET   136      33.350  57.965  16.776  1.00 25.00           C
ATOM    137  CA  LYS   137      32.652  57.758  13.032  1.00 25.00           C
ATOM    138  CA  THR   138      29.000  57.564  13.848  1.00 25.00           C
ATOM    139  CA  SER   139      27.635  58.483  10.429  1.00 25.00           C
ATOM    140  CA  GLY   140      27.213  54.753   9.621  1.00 25.00           C
ATOM    141  CA  ILE   141      23.448  55.421  10.057  1.00 25.00           C
ATOM    142  CA  ARG   142      20.491  53.156  10.823  1.00 25.00           C
ATOM    143  CA  GLU   143      22.468  50.520  12.715  1.00 25.00           C
ATOM    144  CA  LEU   144      24.939  48.797  14.990  1.00 25.00           C
ATOM    145  CA  ASN   145      23.763  45.222  14.498  1.00 25.00           C
ATOM    146  CA  VAL   146      24.703  42.465  16.942  1.00 25.00           C
ATOM    147  CA  ASN   147      22.476  40.402  19.211  1.00 25.00           C
ATOM    148  CA  ILE   148      23.150  36.880  20.452  1.00 25.00           C
ATOM    149  CA  ASP   149      20.536  34.182  19.618  1.00 25.00           C
ATOM    150  CA  VAL   150      21.984  30.970  21.051  1.00 25.00           C
ATOM    151  CA  VAL   151      20.737  27.523  22.105  1.00 25.00           C
ATOM    152  CA  CYS   152      20.538  24.139  23.786  1.00 25.00           C
ATOM    153  CA  ASP   153      21.384  20.645  25.114  1.00 25.00           C
ATOM    154  CA  LYS   154      23.545  17.526  25.373  1.00 25.00           C
ATOM    155  CA  LEU   155      25.439  16.386  22.245  1.00 25.00           C
TER
END
