
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0318TS168_3-D1
# Molecule2: number of CA atoms  154 ( 1200),  selected  154 , name T0318_D1.pdb
# PARAMETERS: T0318TS168_3-D1.T0318_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        25 - 68          4.91    26.30
  LONGEST_CONTINUOUS_SEGMENT:    44        26 - 69          4.91    25.93
  LCS_AVERAGE:     20.94

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       118 - 133         1.84    26.38
  LCS_AVERAGE:      6.29

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       118 - 131         0.91    25.62
  LONGEST_CONTINUOUS_SEGMENT:    14       119 - 132         0.77    25.69
  LCS_AVERAGE:      3.96

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     T       2     T       2      5    8   10     0    4    6    6    7    8    8    8    8   10   11   25   27   32   36   37   39   42   43   46 
LCS_GDT     Q       3     Q       3      5    8   10     0    4    6    6    7    8    8   11   12   16   20   25   27   31   33   36   39   42   43   45 
LCS_GDT     V       4     V       4      5    8   10     3    4    6    6    7    8    8   11   12   16   20   23   25   29   32   36   37   41   44   50 
LCS_GDT     L       5     L       5      5    8   10     3    4    5    6    7    8   11   14   16   17   21   26   31   36   39   46   52   56   60   63 
LCS_GDT     V       6     V       6      5    8   13     3    4    6    6    7    9   12   16   20   23   27   32   37   43   49   53   55   60   61   64 
LCS_GDT     R       7     R       7      5    8   18     1    4    6    7    7    9   12   16   20   25   28   34   38   43   44   47   55   56   59   62 
LCS_GDT     N       8     N       8      5    8   18     2    4    6    7    8    9   13   17   22   27   31   34   38   43   44   47   49   54   58   59 
LCS_GDT     G       9     G       9      5    8   18     0    3    6    6    7   10   12   16   19   21   23   26   29   32   38   39   42   46   51   55 
LCS_GDT     I      10     I      10      5    7   18     2    3    6    6    7    9   10   12   14   17   21   24   27   31   33   35   37   46   50   55 
LCS_GDT     Q      11     Q      11      5    7   18     3    3    6    6    7    9   10   12   14   17   21   24   27   31   33   34   39   46   50   55 
LCS_GDT     A      12     A      12      5    7   18     3    3    6    6    7    9   10   12   14   17   21   23   24   25   30   34   37   46   47   53 
LCS_GDT     V      13     V      13      5    7   18     3    5    6    6    7    9   10   12   14   15   21   23   24   25   27   29   37   42   46   53 
LCS_GDT     G      14     G      14      5    7   18     4    5    6    6    7    9   10   12   14   17   21   23   23   25   27   29   32   46   47   53 
LCS_GDT     D      15     D      15      5    7   18     4    5    6    6    7   10   12   12   14   16   18   22   27   32   36   39   45   47   50   55 
LCS_GDT     G      16     G      16      5    9   18     4    5    6    7    9   10   12   12   15   17   18   22   27   32   36   39   45   47   50   55 
LCS_GDT     L      17     L      17      5    9   18     4    5    6    7    9   10   12   12   15   17   18   22   27   32   36   39   45   47   50   55 
LCS_GDT     T      18     T      18      5    9   18     3    4    6    7    9   10   12   12   15   17   17   21   27   32   36   39   45   47   50   55 
LCS_GDT     S      19     S      19      5    9   18     3    4    6    7    9   10   12   12   14   17   17   20   26   32   36   39   45   47   50   55 
LCS_GDT     L      20     L      20      5    9   18     1    4    6    7    9   10   12   12   15   17   17   19   22   26   31   35   39   44   49   54 
LCS_GDT     I      21     I      21      5    9   18     3    4    6    7    9   10   12   12   15   17   17   19   22   26   31   34   39   43   48   53 
LCS_GDT     I      22     I      22      5    9   26     3    4    6    7    8   10   10   12   15   17   17   19   22   25   30   34   39   42   47   51 
LCS_GDT     V      23     V      23      5    9   30     3    4    5    7    9   10   12   12   15   17   17   25   27   32   36   37   39   42   47   53 
LCS_GDT     G      24     G      24      5    9   36     3    4    5    7    9   13   15   17   18   20   23   32   34   36   37   40   44   46   51   54 
LCS_GDT     K      25     K      25      5    7   44     3    4    5    6    8   10   12   12   17   20   25   32   35   38   42   45   48   49   51   57 
LCS_GDT     K      26     K      26      3    7   44     3    3    5   11   12   15   18   21   26   31   35   38   39   41   43   45   48   49   56   62 
LCS_GDT     S      27     S      27      3    6   44     3    3    4    6   10   15   18   21   26   31   35   38   39   41   43   45   48   49   56   61 
LCS_GDT     V      28     V      28      3    4   44     3    3    6    8   12   15   18   21   26   31   35   38   39   41   43   45   48   49   51   55 
LCS_GDT     L      29     L      29      3    6   44     3    3    4    6    9   12   15   19   25   31   34   38   39   41   43   45   48   49   51   55 
LCS_GDT     K      30     K      30      3    6   44     3    3    4    4    5   10   14   18   21   23   27   34   39   41   43   45   48   48   51   55 
LCS_GDT     N      31     N      31      4    7   44     3    4    7    8   10   13   18   21   26   31   35   38   39   41   43   45   48   49   54   61 
LCS_GDT     V      32     V      32      4    7   44     3    4    7    8   10   13   18   21   26   31   35   38   39   41   43   45   48   51   56   61 
LCS_GDT     T      33     T      33      4    7   44     3    4    7    8   10   13   18   21   26   31   35   38   39   41   43   45   48   51   56   62 
LCS_GDT     F      34     F      34      4    7   44     3    4    7    8   10   13   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     E      35     E      35      4    7   44     3    3    5    8    9   12   15   21   25   28   34   38   39   41   43   45   48   54   61   66 
LCS_GDT     G      36     G      36      4    7   44     3    4    6    8    9   11   15   21   25   28   31   34   38   41   43   45   48   49   54   60 
LCS_GDT     K      37     K      37      4    7   44     3    4    6    6   10   13   18   21   26   31   35   38   39   41   43   45   48   51   56   62 
LCS_GDT     F      38     F      38      3    8   44     3    3    4    7    9   13   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     K      39     K      39      6    8   44     4    5    7    7   10   11   15   17   25   27   32   36   39   41   43   45   48   52   61   66 
LCS_GDT     E      40     E      40      6    8   44     4    5    7    7   10   13   18   21   25   31   34   38   39   41   43   45   48   52   61   66 
LCS_GDT     V      41     V      41      6    8   44     4    5    7    7   10   12   18   21   25   31   35   38   39   41   43   45   48   52   61   66 
LCS_GDT     A      42     A      42      6    8   44     4    5    7    8   12   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     Q      43     Q      43      6   11   44     4    5    7    8   12   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     K      44     K      44      6   13   44     4    4    7    8   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     F      45     F      45      6   13   44     4    4    7    8   10   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     V      46     V      46      4   13   44     3    4    6   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     T      47     T      47      4   13   44     3    4    8   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     D      48     D      48      4   13   44     3    4    7   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     G      49     G      49      4   13   44     4    4    6   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   59   66 
LCS_GDT     D      50     D      50      4   13   44     4    4    7   11   13   15   18   21   26   31   35   38   39   41   43   45   48   49   56   60 
LCS_GDT     S      51     S      51      6   13   44     5    6    8   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   59   66 
LCS_GDT     W      52     W      52      6   13   44     5    6    8   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     N      53     N      53      6   13   44     5    6    8   11   13   15   17   21   23   27   31   34   38   40   42   44   48   49   56   61 
LCS_GDT     S      54     S      54      6   13   44     5    6    8   11   13   15   17   21   25   29   32   37   39   41   42   45   48   49   56   61 
LCS_GDT     M      55     M      55      6   13   44     5    6    8   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     I      56     I      56      6   13   44     3    6    8   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     S      57     S      57      4    7   44     1    4    4    7   10   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     R      58     R      58      4    9   44     3    3    6    8   10   13   16   20   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     I      59     I      59      4    9   44     3    4    6    8   10   13   16   19   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     P      60     P      60      4    9   44     3    4    4    7   10   13   16   20   26   29   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     A      61     A      61      3    9   44     3    3    6    8   10   13   16   20   26   29   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     S      62     S      62      3    9   44     3    4    6    8   10   13   16   20   26   30   35   38   39   41   43   45   48   52   61   66 
LCS_GDT     G      63     G      63      4    9   44     3    4    6   11   13   15   18   21   26   31   35   38   39   41   43   45   48   52   61   66 
LCS_GDT     R      64     R      64      5    9   44     3    5    8   11   13   15   18   21   26   31   35   38   39   41   43   45   48   51   59   65 
LCS_GDT     H      65     H      65      5    9   44     3    5    8   11   13   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     P      66     P      66      5    9   44     3    5    6    8   10   13   18   21   25   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     L      67     L      67      5    9   44     3    5    5    7   12   15   18   21   26   31   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     H      68     H      68      5    9   44     3    5    5    7   10   13   18   21   25   30   35   38   39   41   43   45   48   54   61   66 
LCS_GDT     Y      69     Y      69      5    8   44     4    4    5    7   10   12   15   20   25   26   27   34   36   41   43   45   48   54   61   66 
LCS_GDT     E      70     E      70      4    5   34     3    3    4    7    9   10   13   17   21   24   26   28   33   41   42   45   48   49   56   62 
LCS_GDT     L      71     L      71      4    5   32     3    3    6    7   10   13   15   20   24   28   33   37   39   41   43   45   48   54   61   66 
LCS_GDT     A      72     A      72      4    5   31     3    3    6    6    6    9   11   14   16   23   26   31   34   37   42   45   48   54   61   66 
LCS_GDT     H      73     H      73      3    5   29     3    3    3    4    6   10   15   17   20   26   31   32   34   35   39   44   48   54   61   66 
LCS_GDT     L      74     L      74      4    8   29     3    3    5    5    9   10   15   16   20   26   31   32   34   35   39   42   45   54   59   66 
LCS_GDT     I      75     I      75      4    8   29     3    4    5    6    8   10   15   17   20   26   31   32   34   35   39   42   47   54   61   66 
LCS_GDT     T      76     T      76      4    8   29     1    4    5    6    9   10   15   17   20   26   31   32   34   35   39   42   45   54   61   66 
LCS_GDT     V      77     V      77      4    8   29     3    3    4    7    9   10   15   17   22   26   31   32   34   35   39   44   48   54   61   66 
LCS_GDT     P      78     P      78      3    8   29     3    3    4    6    9   10   15   17   22   26   31   32   34   35   39   42   48   54   61   66 
LCS_GDT     D      79     D      79      3    9   29     3    4    5    7    9   10   15   17   22   26   31   32   34   35   39   44   48   54   61   66 
LCS_GDT     A      80     A      80      3    9   29     0    4    7    8    9   10   15   17   22   26   31   32   34   36   41   44   48   54   61   66 
LCS_GDT     S      81     S      81      7    9   36     0    6    7    8    8   10   16   23   25   29   31   36   38   43   45   51   54   57   61   66 
LCS_GDT     S      82     S      82      7    9   36     0    3    7    8    8   18   22   23   24   29   31   36   40   44   49   52   56   60   61   63 
LCS_GDT     R      83     R      83      7    9   36     3    6    7    8    8   10   11   11   24   26   29   34   40   45   49   52   56   60   62   64 
LCS_GDT     G      84     G      84      7    9   36     3    6    7    8    8   10   11   18   24   31   34   38   42   46   49   53   56   60   62   64 
LCS_GDT     N      85     N      85      7    9   36     3    6    7    8    8   10   14   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     T      86     T      86      7    9   36     3    6    7    8    8   18   22   23   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     P      87     P      87      7    9   36     3    6    7    8    8   10   13   20   26   30   33   36   41   45   49   52   56   60   62   66 
LCS_GDT     T      88     T      88      4   13   36     3    4    4    5    6    8   12   20   26   29   33   36   41   45   49   53   56   60   62   66 
LCS_GDT     N      89     N      89     12   13   36     4   10   12   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     A      90     A      90     12   13   36     7   10   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     H      91     H      91     12   13   36     7   10   12   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     S      92     S      92     12   13   36     7   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     I      93     I      93     12   13   36     6   10   12   16   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     Y      94     Y      94     12   13   36     7   10   12   15   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     K      95     K      95     12   13   36     7   10   12   15   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     E      96     E      96     12   13   36     7   10   12   15   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     L      97     L      97     12   13   36     7   10   12   15   18   23   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     K      98     K      98     12   13   36     4   10   12   15   18   21   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     P      99     P      99     12   13   36     4    7   12   15   17   20   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     I     100     I     100     12   13   36     4    9   12   15   17   19   25   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     N     101     N     101      3   13   36     3    4    6    7   10   13   19   24   27   30   34   39   42   46   49   53   56   60   62   64 
LCS_GDT     Y     102     Y     102      4    7   36     3    4    4    5    9   15   17   20   24   29   33   36   41   46   49   53   56   60   62   64 
LCS_GDT     P     103     P     103      4    6   36     3    4    5    7    7   10   14   18   22   28   31   36   40   46   49   53   56   60   62   64 
LCS_GDT     E     104     E     104      4    6   36     3    4    4    6    7    9   15   20   22   24   26   34   37   40   43   47   55   56   59   62 
LCS_GDT     D     105     D     105      4    7   36     3    4    5    7    9   11   14   23   26   30   33   38   41   46   49   53   56   60   62   64 
LCS_GDT     T     106     T     106      4    7   36     3    4    5    7   10   13   21   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     K     107     K     107      4    7   36     3    4    6    7   11   16   24   31   32   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     N     108     N     108      4    9   36     3    4    6    7   20   21   25   26   27   35   37   39   42   46   49   53   56   60   62   64 
LCS_GDT     V     109     V     109      4    9   36     3    4    6    8   12   20   25   26   27   32   36   39   42   46   49   53   56   60   62   64 
LCS_GDT     H     110     H     110      4    9   36     3    4    6    8   12   18   20   22   26   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     F     111     F     111      4    9   36     3    4    6    8   12   18   20   24   27   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     V     112     V     112      4    9   36     3    4    6    8   12   18   20   24   27   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     L     113     L     113      4    9   36     3    4    6    7   12   18   20   24   27   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     F     114     F     114      4    9   36     3    4    6    8   12   18   20   24   27   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     A     115     A     115      4    9   36     3    3    4    8   12   18   20   24   27   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     E     116     E     116      4    9   36     3    4    6    8   13   18   20   24   27   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     Y     117     Y     117      4    7   35     1    3    6    7    9   10   18   20   25   28   33   38   42   45   49   53   56   60   62   65 
LCS_GDT     P     118     P     118     14   16   28     3    4    6   15   21   23   25   31   32   35   37   38   42   45   48   52   56   60   62   66 
LCS_GDT     D     119     D     119     14   16   28     6   14   15   17   21   23   25   31   32   35   37   38   42   45   48   52   56   60   62   66 
LCS_GDT     V     120     V     120     14   16   28    10   14   15   17   21   23   25   31   32   35   37   38   42   44   47   52   56   60   62   66 
LCS_GDT     L     121     L     121     14   16   28    10   14   15   17   21   23   25   31   32   35   37   38   42   45   48   52   56   60   62   66 
LCS_GDT     S     122     S     122     14   16   28    10   14   15   17   21   23   25   31   32   35   37   38   42   46   49   53   56   60   62   66 
LCS_GDT     H     123     H     123     14   16   28    10   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     V     124     V     124     14   16   28    10   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     A     125     A     125     14   16   28    10   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     A     126     A     126     14   16   28    10   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     I     127     I     127     14   16   28    10   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     A     128     A     128     14   16   28    10   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     R     129     R     129     14   16   28    10   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     T     130     T     130     14   16   28     6   14   15   17   21   23   25   31   32   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     F     131     F     131     14   16   28     3   14   15   17   21   23   25   31   32   35   37   38   42   46   49   53   56   60   62   66 
LCS_GDT     C     132     C     132     14   16   28     3    4   14   16   21   23   25   26   27   32   36   38   42   44   48   52   56   60   62   65 
LCS_GDT     K     133     K     133      4   16   28     3    4    4    5    6   10   14   25   28   34   37   38   42   46   49   53   56   60   62   64 
LCS_GDT     F     134     F     134      4    6   28     3    4    4    5    8   10   21   31   32   35   37   38   42   46   49   53   56   60   62   64 
LCS_GDT     S     135     S     135      4    7   28     3    4    4    5    8   16   24   31   32   35   37   38   42   46   49   53   56   60   62   64 
LCS_GDT     M     136     M     136      5    7   28     3    4    5    5    7   10   14   18   20   28   33   38   42   46   49   53   56   60   62   64 
LCS_GDT     K     137     K     137      5    7   28     3    4    5    5    8   10   14   18   24   28   34   38   42   46   49   53   56   60   62   64 
LCS_GDT     T     138     T     138      5    7   28     3    4    5    5    7   10   13   17   20   21   22   30   36   42   49   53   56   58   62   64 
LCS_GDT     S     139     S     139      5    7   28     3    4    5    5    8   10   14   18   20   23   28   35   42   46   49   53   56   60   62   64 
LCS_GDT     G     140     G     140      5    8   28     4    4    5    8   10   13   21   24   27   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     I     141     I     141      5    8   28     4    4    5    8   10   14   21   24   29   34   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     R     142     R     142      5    8   28     4    4    5    7    9   13   17   24   27   35   37   39   42   46   49   53   56   60   62   66 
LCS_GDT     E     143     E     143      5    8   28     3    4    5    8   10   11   14   17   21   26   32   39   42   46   49   53   56   60   62   66 
LCS_GDT     L     144     L     144      5    8   28     3    4    5    8   10   11   13   17   20   24   25   30   34   44   49   53   56   60   62   66 
LCS_GDT     N     145     N     145      5    8   15     3    4    5    7    9    9   11   12   17   19   20   24   28   34   38   41   48   52   54   60 
LCS_GDT     V     146     V     146      4    8   15     0    4    4    8    9    9   11   12   17   19   21   26   29   34   38   44   48   53   54   61 
LCS_GDT     N     147     N     147      4    9   15     0    4    5    8    9    9   11   12   17   19   20   26   28   31   34   41   42   48   54   56 
LCS_GDT     I     148     I     148      5    9   15     0    4    7    8    9    9   10   13   17   19   21   26   29   35   41   47   52   56   59   63 
LCS_GDT     D     149     D     149      5    9   15     2    4    7    8    8    9   10   13   17   19   22   26   38   43   44   49   55   56   60   63 
LCS_GDT     V     150     V     150      5    9   15     3    3    7    8   12   15   20   24   27   30   33   39   42   46   49   53   56   60   62   64 
LCS_GDT     V     151     V     151      5    9   15     3    4    7    8   12   16   20   24   27   30   33   36   40   45   49   53   55   60   61   64 
LCS_GDT     C     152     C     152      5    9   15     3    4    7    8    8   10   14   18   24   26   31   35   38   45   49   52   55   60   61   64 
LCS_GDT     D     153     D     153      4    9   12     3    4    7    8    8    9   10   11   14   15   18   19   30   36   36   46   47   50   52   58 
LCS_GDT     K     154     K     154      4    9   12     3    4    7    8    8    9   10   10   12   16   17   21   24   25   30   33   36   41   46   53 
LCS_GDT     L     155     L     155      3    9   12     0    3    3    4    5    5   10   10   11   13   17   20   22   25   30   33   36   39   45   53 
LCS_AVERAGE  LCS_A:  10.40  (   3.96    6.29   20.94 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     14     15     17     21     23     25     31     32     35     37     39     42     46     49     53     56     60     62     66 
GDT PERCENT_CA   6.49   9.09   9.74  11.04  13.64  14.94  16.23  20.13  20.78  22.73  24.03  25.32  27.27  29.87  31.82  34.42  36.36  38.96  40.26  42.86
GDT RMS_LOCAL    0.27   0.68   0.84   1.04   1.51   1.72   1.93   2.76   2.83   3.22   3.43   4.26   4.01   4.80   5.00   5.33   5.51   5.84   6.05   7.56
GDT RMS_ALL_CA  25.97  25.14  24.86  24.67  25.82  25.85  25.55  26.58  26.57  26.53  26.62  26.00  26.93  26.81  25.94  26.31  26.58  25.95  26.50  16.24

#      Molecule1      Molecule2       DISTANCE
LGA    T       2      T       2         28.239
LGA    Q       3      Q       3         23.176
LGA    V       4      V       4         18.916
LGA    L       5      L       5         19.841
LGA    V       6      V       6         18.403
LGA    R       7      R       7         22.590
LGA    N       8      N       8         26.247
LGA    G       9      G       9         30.206
LGA    I      10      I      10         31.915
LGA    Q      11      Q      11         33.002
LGA    A      12      A      12         34.027
LGA    V      13      V      13         32.349
LGA    G      14      G      14         32.555
LGA    D      15      D      15         34.921
LGA    G      16      G      16         34.383
LGA    L      17      L      17         33.811
LGA    T      18      T      18         34.815
LGA    S      19      S      19         33.546
LGA    L      20      L      20         35.967
LGA    I      21      I      21         34.241
LGA    I      22      I      22         35.292
LGA    V      23      V      23         32.321
LGA    G      24      G      24         32.998
LGA    K      25      K      25         32.805
LGA    K      26      K      26         37.752
LGA    S      27      S      27         41.581
LGA    V      28      V      28         42.908
LGA    L      29      L      29         44.314
LGA    K      30      K      30         48.729
LGA    N      31      N      31         51.501
LGA    V      32      V      32         48.802
LGA    T      33      T      33         52.661
LGA    F      34      F      34         49.642
LGA    E      35      E      35         51.495
LGA    G      36      G      36         52.110
LGA    K      37      K      37         48.470
LGA    F      38      F      38         41.353
LGA    K      39      K      39         41.145
LGA    E      40      E      40         40.038
LGA    V      41      V      41         35.350
LGA    A      42      A      42         37.347
LGA    Q      43      Q      43         40.366
LGA    K      44      K      44         36.313
LGA    F      45      F      45         35.189
LGA    V      46      V      46         35.420
LGA    T      47      T      47         40.334
LGA    D      48      D      48         43.890
LGA    G      49      G      49         46.683
LGA    D      50      D      50         47.944
LGA    S      51      S      51         43.062
LGA    W      52      W      52         43.622
LGA    N      53      N      53         46.779
LGA    S      54      S      54         43.996
LGA    M      55      M      55         39.591
LGA    I      56      I      56         41.566
LGA    S      57      S      57         45.750
LGA    R      58      R      58         46.631
LGA    I      59      I      59         42.026
LGA    P      60      P      60         36.546
LGA    A      61      A      61         34.622
LGA    S      62      S      62         30.001
LGA    G      63      G      63         29.588
LGA    R      64      R      64         28.359
LGA    H      65      H      65         30.576
LGA    P      66      P      66         30.130
LGA    L      67      L      67         29.459
LGA    H      68      H      68         29.461
LGA    Y      69      Y      69         28.397
LGA    E      70      E      70         24.341
LGA    L      71      L      71         21.975
LGA    A      72      A      72         21.692
LGA    H      73      H      73         19.899
LGA    L      74      L      74         17.227
LGA    I      75      I      75         14.684
LGA    T      76      T      76         16.362
LGA    V      77      V      77         16.199
LGA    P      78      P      78         19.540
LGA    D      79      D      79         21.096
LGA    A      80      A      80         19.714
LGA    S      81      S      81         13.320
LGA    S      82      S      82          9.734
LGA    R      83      R      83          8.059
LGA    G      84      G      84          6.288
LGA    N      85      N      85          3.907
LGA    T      86      T      86          4.602
LGA    P      87      P      87          9.516
LGA    T      88      T      88          9.161
LGA    N      89      N      89          3.445
LGA    A      90      A      90          2.502
LGA    H      91      H      91          3.369
LGA    S      92      S      92          3.182
LGA    I      93      I      93          0.896
LGA    Y      94      Y      94          2.301
LGA    K      95      K      95          3.423
LGA    E      96      E      96          1.750
LGA    L      97      L      97          2.022
LGA    K      98      K      98          2.821
LGA    P      99      P      99          2.552
LGA    I     100      I     100          3.254
LGA    N     101      N     101          8.645
LGA    Y     102      Y     102          9.980
LGA    P     103      P     103         10.541
LGA    E     104      E     104         13.422
LGA    D     105      D     105          8.358
LGA    T     106      T     106          3.765
LGA    K     107      K     107          3.436
LGA    N     108      N     108          5.323
LGA    V     109      V     109          7.103
LGA    H     110      H     110         12.147
LGA    F     111      F     111         10.444
LGA    V     112      V     112         10.979
LGA    L     113      L     113         12.956
LGA    F     114      F     114         14.569
LGA    A     115      A     115         13.247
LGA    E     116      E     116         10.891
LGA    Y     117      Y     117          7.031
LGA    P     118      P     118          3.771
LGA    D     119      D     119          3.944
LGA    V     120      V     120          3.909
LGA    L     121      L     121          2.991
LGA    S     122      S     122          2.326
LGA    H     123      H     123          2.206
LGA    V     124      V     124          0.643
LGA    A     125      A     125          0.814
LGA    A     126      A     126          1.023
LGA    I     127      I     127          2.229
LGA    A     128      A     128          2.574
LGA    R     129      R     129          2.643
LGA    T     130      T     130          3.078
LGA    F     131      F     131          3.663
LGA    C     132      C     132          5.922
LGA    K     133      K     133          5.882
LGA    F     134      F     134          3.900
LGA    S     135      S     135          3.340
LGA    M     136      M     136          7.589
LGA    K     137      K     137          8.038
LGA    T     138      T     138         13.463
LGA    S     139      S     139         11.338
LGA    G     140      G     140          5.326
LGA    I     141      I     141          5.689
LGA    R     142      R     142          4.948
LGA    E     143      E     143          8.128
LGA    L     144      L     144         11.335
LGA    N     145      N     145         16.974
LGA    V     146      V     146         16.757
LGA    N     147      N     147         19.716
LGA    I     148      I     148         17.717
LGA    D     149      D     149         18.663
LGA    V     150      V     150         15.743
LGA    V     151      V     151         19.146
LGA    C     152      C     152         17.655
LGA    D     153      D     153         18.664
LGA    K     154      K     154         20.701
LGA    L     155      L     155         20.602

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     31    2.76    18.669    15.348     1.084

LGA_LOCAL      RMSD =  2.759  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 26.622  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 15.372  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.867794 * X  +   0.485341 * Y  +   0.106671 * Z  +   2.219144
  Y_new =   0.464104 * X  +   0.868304 * Y  +  -0.175086 * Z  +  60.777809
  Z_new =  -0.177599 * X  +  -0.102432 * Y  +  -0.978758 * Z  +   2.828973 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.037318    0.104275  [ DEG:  -174.0255      5.9745 ]
  Theta =   0.178546    2.963046  [ DEG:    10.2299    169.7701 ]
  Phi   =   2.650487   -0.491106  [ DEG:   151.8617    -28.1383 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0318TS168_3-D1                               
REMARK     2: T0318_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0318TS168_3-D1.T0318_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   31   2.76  15.348    15.37
REMARK  ---------------------------------------------------------- 
MOLECULE T0318TS168_3-D1
PFRMAT TS
TARGET T0318
MODEL 3
PARENT N/A
ATOM      2  CA  THR     2       7.486  36.067  14.256  1.00 25.00           C
ATOM      3  CA  GLN     3       9.622  39.206  14.440  1.00 25.00           C
ATOM      4  CA  VAL     4      10.888  42.750  13.817  1.00 25.00           C
ATOM      5  CA  LEU     5      11.439  46.482  14.155  1.00 25.00           C
ATOM      6  CA  VAL     6      13.898  48.213  11.826  1.00 25.00           C
ATOM      7  CA  ARG     7      15.778  50.980  10.092  1.00 25.00           C
ATOM      8  CA  ASN     8      17.615  52.725   7.278  1.00 25.00           C
ATOM      9  CA  GLY     9      19.803  55.613   6.219  1.00 25.00           C
ATOM     10  CA  ILE    10      21.846  58.138   4.172  1.00 25.00           C
ATOM     11  CA  GLN    11      23.735  61.276   2.956  1.00 25.00           C
ATOM     12  CA  ALA    12      25.534  64.322   1.456  1.00 25.00           C
ATOM     13  CA  VAL    13      24.835  67.349   3.702  1.00 25.00           C
ATOM     14  CA  GLY    14      26.053  70.486   5.429  1.00 25.00           C
ATOM     15  CA  ASP    15      24.540  72.693   8.142  1.00 25.00           C
ATOM     16  CA  GLY    16      20.733  72.481   8.475  1.00 25.00           C
ATOM     17  CA  LEU    17      18.000  70.047   9.493  1.00 25.00           C
ATOM     18  CA  THR    18      14.992  68.716  11.476  1.00 25.00           C
ATOM     19  CA  SER    19      12.702  65.714  10.916  1.00 25.00           C
ATOM     20  CA  LEU    20       9.798  63.438  11.834  1.00 25.00           C
ATOM     21  CA  ILE    21       7.668  60.455  12.657  1.00 25.00           C
ATOM     22  CA  ILE    22       6.071  57.418  14.209  1.00 25.00           C
ATOM     23  CA  VAL    23       5.643  57.668  17.983  1.00 25.00           C
ATOM     24  CA  GLY    24       4.128  56.718  21.342  1.00 25.00           C
ATOM     25  CA  LYS    25       3.315  57.629  24.893  1.00 25.00           C
ATOM     26  CA  LYS    26       0.428  58.990  27.038  1.00 25.00           C
ATOM     27  CA  SER    27      -2.752  58.626  29.142  1.00 25.00           C
ATOM     28  CA  VAL    28      -1.825  60.907  32.100  1.00 25.00           C
ATOM     29  CA  LEU    29      -3.918  58.435  34.040  1.00 25.00           C
ATOM     30  CA  LYS    30      -5.257  61.141  36.444  1.00 25.00           C
ATOM     31  CA  ASN    31      -3.253  64.394  36.784  1.00 25.00           C
ATOM     32  CA  VAL    32       0.270  63.153  37.085  1.00 25.00           C
ATOM     33  CA  THR    33       1.779  64.629  40.301  1.00 25.00           C
ATOM     34  CA  PHE    34       5.330  63.370  39.780  1.00 25.00           C
ATOM     35  CA  GLU    35       4.387  59.768  40.562  1.00 25.00           C
ATOM     36  CA  GLY    36       4.104  56.609  42.557  1.00 25.00           C
ATOM     37  CA  LYS    37       7.743  57.182  43.431  1.00 25.00           C
ATOM     38  CA  PHE    38      10.176  55.240  41.199  1.00 25.00           C
ATOM     39  CA  LYS    39      10.471  53.732  37.701  1.00 25.00           C
ATOM     40  CA  GLU    40      14.253  54.313  37.547  1.00 25.00           C
ATOM     41  CA  VAL    41      14.161  54.067  33.726  1.00 25.00           C
ATOM     42  CA  ALA    42      11.279  56.586  33.609  1.00 25.00           C
ATOM     43  CA  GLN    43      13.241  58.973  35.874  1.00 25.00           C
ATOM     44  CA  LYS    44      16.310  58.639  33.606  1.00 25.00           C
ATOM     45  CA  PHE    45      14.151  59.384  30.532  1.00 25.00           C
ATOM     46  CA  VAL    46      16.711  61.974  29.251  1.00 25.00           C
ATOM     47  CA  THR    47      16.288  63.979  32.466  1.00 25.00           C
ATOM     48  CA  ASP    48      16.821  67.127  30.393  1.00 25.00           C
ATOM     49  CA  GLY    49      13.108  67.117  29.667  1.00 25.00           C
ATOM     50  CA  ASP    50      14.182  68.699  26.361  1.00 25.00           C
ATOM     51  CA  SER    51      14.231  65.276  24.738  1.00 25.00           C
ATOM     52  CA  TRP    52      10.438  65.408  25.260  1.00 25.00           C
ATOM     53  CA  ASN    53       9.934  66.264  21.561  1.00 25.00           C
ATOM     54  CA  SER    54      12.176  63.327  20.552  1.00 25.00           C
ATOM     55  CA  MET    55      10.178  60.985  22.829  1.00 25.00           C
ATOM     56  CA  ILE    56       6.509  61.207  21.785  1.00 25.00           C
ATOM     57  CA  SER    57       2.894  61.394  23.103  1.00 25.00           C
ATOM     58  CA  ARG    58      -0.068  59.431  21.650  1.00 25.00           C
ATOM     59  CA  ILE    59      -0.816  55.778  22.449  1.00 25.00           C
ATOM     60  CA  PRO    60       0.377  53.464  25.276  1.00 25.00           C
ATOM     61  CA  ALA    61      -1.821  50.482  26.139  1.00 25.00           C
ATOM     62  CA  SER    62       0.492  47.476  26.513  1.00 25.00           C
ATOM     63  CA  GLY    63       2.711  48.959  23.842  1.00 25.00           C
ATOM     64  CA  ARG    64       5.182  51.089  25.717  1.00 25.00           C
ATOM     65  CA  HIS    65       7.461  53.999  24.878  1.00 25.00           C
ATOM     66  CA  PRO    66      10.454  56.065  23.879  1.00 25.00           C
ATOM     67  CA  LEU    67      14.144  54.987  23.824  1.00 25.00           C
ATOM     68  CA  HIS    68      16.252  57.047  21.378  1.00 25.00           C
ATOM     69  CA  TYR    69      16.549  59.857  23.963  1.00 25.00           C
ATOM     70  CA  GLU    70      17.640  57.328  26.623  1.00 25.00           C
ATOM     71  CA  LEU    71      20.265  55.902  24.227  1.00 25.00           C
ATOM     72  CA  ALA    72      21.564  59.433  23.511  1.00 25.00           C
ATOM     73  CA  HIS    73      21.789  60.139  27.269  1.00 25.00           C
ATOM     74  CA  LEU    74      23.714  56.869  27.793  1.00 25.00           C
ATOM     75  CA  ILE    75      21.004  54.559  29.223  1.00 25.00           C
ATOM     76  CA  THR    76      18.218  52.133  28.314  1.00 25.00           C
ATOM     77  CA  VAL    77      14.989  50.812  26.729  1.00 25.00           C
ATOM     78  CA  PRO    78      12.885  49.988  23.660  1.00 25.00           C
ATOM     79  CA  ASP    79       9.910  48.324  25.283  1.00 25.00           C
ATOM     80  CA  ALA    80       7.161  46.182  26.927  1.00 25.00           C
ATOM     81  CA  SER    81       9.916  43.569  27.002  1.00 25.00           C
ATOM     82  CA  SER    82      11.610  44.836  30.169  1.00 25.00           C
ATOM     83  CA  ARG    83      14.045  44.607  33.148  1.00 25.00           C
ATOM     84  CA  GLY    84      15.999  41.394  33.766  1.00 25.00           C
ATOM     85  CA  ASN    85      15.404  40.638  30.103  1.00 25.00           C
ATOM     86  CA  THR    86      17.226  40.587  26.781  1.00 25.00           C
ATOM     87  CA  PRO    87      15.514  43.862  25.934  1.00 25.00           C
ATOM     88  CA  THR    88      16.419  46.307  28.739  1.00 25.00           C
ATOM     89  CA  ASN    89      19.525  44.232  29.580  1.00 25.00           C
ATOM     90  CA  ALA    90      20.554  44.231  25.891  1.00 25.00           C
ATOM     91  CA  HIS    91      20.103  48.031  25.740  1.00 25.00           C
ATOM     92  CA  SER    92      22.243  48.436  28.889  1.00 25.00           C
ATOM     93  CA  ILE    93      24.964  46.220  27.355  1.00 25.00           C
ATOM     94  CA  TYR    94      24.891  48.309  24.146  1.00 25.00           C
ATOM     95  CA  LYS    95      25.207  51.524  26.204  1.00 25.00           C
ATOM     96  CA  GLU    96      28.183  50.042  28.107  1.00 25.00           C
ATOM     97  CA  LEU    97      29.844  49.066  24.797  1.00 25.00           C
ATOM     98  CA  LYS    98      29.305  52.611  23.452  1.00 25.00           C
ATOM     99  CA  PRO    99      30.843  54.080  26.638  1.00 25.00           C
ATOM    100  CA  ILE   100      33.862  51.749  26.284  1.00 25.00           C
ATOM    101  CA  ASN   101      34.955  48.217  25.492  1.00 25.00           C
ATOM    102  CA  TYR   102      35.707  45.443  22.986  1.00 25.00           C
ATOM    103  CA  PRO   103      35.855  47.445  19.787  1.00 25.00           C
ATOM    104  CA  GLU   104      39.207  45.839  18.775  1.00 25.00           C
ATOM    105  CA  ASP   105      40.632  49.250  17.941  1.00 25.00           C
ATOM    106  CA  THR   106      37.775  51.536  16.770  1.00 25.00           C
ATOM    107  CA  LYS   107      37.833  49.118  13.782  1.00 25.00           C
ATOM    108  CA  ASN   108      34.539  50.783  13.009  1.00 25.00           C
ATOM    109  CA  VAL   109      31.002  49.448  13.632  1.00 25.00           C
ATOM    110  CA  HIS   110      28.148  48.287  11.460  1.00 25.00           C
ATOM    111  CA  PHE   111      27.286  45.310  13.637  1.00 25.00           C
ATOM    112  CA  VAL   112      27.223  41.811  15.168  1.00 25.00           C
ATOM    113  CA  LEU   113      23.707  41.036  13.842  1.00 25.00           C
ATOM    114  CA  PHE   114      21.539  38.847  16.116  1.00 25.00           C
ATOM    115  CA  ALA   115      18.329  38.673  18.156  1.00 25.00           C
ATOM    116  CA  GLU   116      18.009  36.235  21.079  1.00 25.00           C
ATOM    117  CA  TYR   117      18.970  35.496  24.745  1.00 25.00           C
ATOM    118  CA  PRO   118      22.201  34.457  26.499  1.00 25.00           C
ATOM    119  CA  ASP   119      24.243  37.462  27.709  1.00 25.00           C
ATOM    120  CA  VAL   120      26.372  37.328  24.529  1.00 25.00           C
ATOM    121  CA  LEU   121      23.203  37.212  22.383  1.00 25.00           C
ATOM    122  CA  SER   122      21.786  40.230  24.267  1.00 25.00           C
ATOM    123  CA  HIS   123      25.060  42.141  23.719  1.00 25.00           C
ATOM    124  CA  VAL   124      24.952  41.302  19.984  1.00 25.00           C
ATOM    125  CA  ALA   125      21.329  42.526  19.789  1.00 25.00           C
ATOM    126  CA  ALA   126      22.307  45.781  21.552  1.00 25.00           C
ATOM    127  CA  ILE   127      25.203  46.270  19.094  1.00 25.00           C
ATOM    128  CA  ALA   128      22.831  45.688  16.145  1.00 25.00           C
ATOM    129  CA  ARG   129      20.370  48.244  17.586  1.00 25.00           C
ATOM    130  CA  THR   130      23.209  50.783  17.994  1.00 25.00           C
ATOM    131  CA  PHE   131      24.296  50.187  14.370  1.00 25.00           C
ATOM    132  CA  CYS   132      20.692  50.699  13.180  1.00 25.00           C
ATOM    133  CA  LYS   133      20.469  53.959  15.177  1.00 25.00           C
ATOM    134  CA  PHE   134      23.763  55.159  13.633  1.00 25.00           C
ATOM    135  CA  SER   135      25.608  58.471  13.151  1.00 25.00           C
ATOM    136  CA  MET   136      27.373  60.545  15.807  1.00 25.00           C
ATOM    137  CA  LYS   137      30.136  61.631  18.184  1.00 25.00           C
ATOM    138  CA  THR   138      30.300  62.899  21.735  1.00 25.00           C
ATOM    139  CA  SER   139      33.985  62.197  21.460  1.00 25.00           C
ATOM    140  CA  GLY   140      35.840  62.060  18.087  1.00 25.00           C
ATOM    141  CA  ILE   141      36.158  59.137  15.740  1.00 25.00           C
ATOM    142  CA  ARG   142      33.621  56.314  15.908  1.00 25.00           C
ATOM    143  CA  GLU   143      29.827  56.207  16.334  1.00 25.00           C
ATOM    144  CA  LEU   144      26.645  55.293  18.064  1.00 25.00           C
ATOM    145  CA  ASN   145      23.043  55.747  19.114  1.00 25.00           C
ATOM    146  CA  VAL   146      19.874  53.693  19.306  1.00 25.00           C
ATOM    147  CA  ASN   147      17.000  51.367  18.286  1.00 25.00           C
ATOM    148  CA  ILE   148      15.762  48.228  16.554  1.00 25.00           C
ATOM    149  CA  ASP   149      16.710  44.979  14.819  1.00 25.00           C
ATOM    150  CA  VAL   150      18.574  42.085  13.332  1.00 25.00           C
ATOM    151  CA  VAL   151      18.495  39.127  11.019  1.00 25.00           C
ATOM    152  CA  CYS   152      21.822  38.415   9.322  1.00 25.00           C
ATOM    153  CA  ASP   153      25.560  38.241   8.651  1.00 25.00           C
ATOM    154  CA  LYS   154      26.742  39.329   5.192  1.00 25.00           C
ATOM    155  CA  LEU   155      26.201  42.486   3.091  1.00 25.00           C
TER
END
