
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS168_1
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS168_1.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        79 - 106         4.96    21.36
  LONGEST_CONTINUOUS_SEGMENT:    28        80 - 107         4.98    20.83
  LCS_AVERAGE:     15.83

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        85 - 104         1.73    22.19
  LCS_AVERAGE:      7.29

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        85 - 100         0.98    22.29
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    22.41
  LCS_AVERAGE:      4.95

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      3    4   14     3    4    4    5    5    8    9   10   13   16   20   21   23   26   28   35   38   40   43   46 
LCS_GDT     K       2     K       2      3    4   14     3    4    4    5    5    6   10   11   14   16   20   22   24   26   29   35   38   40   43   46 
LCS_GDT     F       3     F       3      3    4   14     3    4    4    5    5    6   11   12   15   17   20   22   24   26   29   35   38   40   44   46 
LCS_GDT     L       4     L       4      3    4   14     1    4    4    5    8    9   13   14   17   19   24   26   30   33   36   37   39   43   50   54 
LCS_GDT     T       5     T       5      3    4   20     3    8   12   12   13   15   15   17   18   19   24   26   30   33   37   39   44   46   51   54 
LCS_GDT     T       6     T       6      3    4   20     3    4    6   10   12   12   15   17   19   20   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     N       7     N       7      4    5   20     3    4    4    6    6    9   12   17   17   22   25   28   33   36   39   43   46   48   51   54 
LCS_GDT     F       8     F       8      4    5   20     3    4    6    6    7   10   12   13   17   18   21   25   29   34   39   43   46   48   51   54 
LCS_GDT     L       9     L       9      4    6   20     3    4    5    5    7   11   12   12   14   18   23   27   33   36   39   43   46   48   51   54 
LCS_GDT     K      10     K      10      4    7   20     3    4    4    5    7   11   12   12   13   18   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     C      11     C      11      4    7   20     3    3    4    6    9   10   13   16   19   20   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     S      12     S      12      4    7   20     3    3    4    7    9   10   12   15   19   20   24   28   33   36   39   43   46   48   50   54 
LCS_GDT     V      13     V      13      4    7   20     3    4    4    7   11   11   13   17   17   20   23   26   29   33   37   39   44   46   51   54 
LCS_GDT     K      14     K      14      3    7   20     3    4    5    7   11   11   13   17   19   20   23   26   29   33   37   39   44   46   51   54 
LCS_GDT     A      15     A      15      3    7   20     3    4    4    7    8   10   12   12   15   19   22   24   28   33   37   39   44   46   51   53 
LCS_GDT     C      16     C      16      3    7   20     4    4    4    7    8   11   12   12   14   19   22   24   28   33   37   39   44   46   51   54 
LCS_GDT     D      17     D      17      4    6   20     4    4    4    7    7   11   13   17   19   20   24   28   30   36   39   43   46   48   51   54 
LCS_GDT     T      18     T      18      4    6   20     4    4    4    7    7    8   13   17   17   19   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     S      19     S      19      4    6   20     4    4    4    7   11   11   13   17   17   19   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     N      20     N      20      5    6   20     4    5    6    7   11   11   13   17   17   19   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     D      21     D      21      5    6   20     4    5    6    6    7   10   12   15   19   20   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     N      22     N      22      5    6   20     4    5    6    7    9    9   12   15   19   20   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     F      23     F      23      5    6   20     4    5    6    7   11   11   13   17   19   20   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     P      24     P      24      5    6   20     1    5    6    6    8    9   11   17   19   20   24   28   33   36   39   43   46   48   51   54 
LCS_GDT     L      25     L      25      4    6   20     0    3    5    6    8   11   12   17   19   20   23   27   30   33   37   41   46   48   51   54 
LCS_GDT     Q      26     Q      26      4    6   20     0    3    5    6    8    9   10   13   16   19   22   27   30   33   37   39   42   46   49   53 
LCS_GDT     Y      27     Y      27      4    6   21     0    3    5    7   10   13   14   15   18   18   21   24   27   29   32   36   41   46   49   52 
LCS_GDT     D      28     D      28      4    7   21     3    3    5    9   11   13   14   14   14   19   21   24   27   29   32   35   38   42   45   50 
LCS_GDT     G      29     G      29      4    7   21     3    3    4    6    8    9   10   11   14   19   21   24   27   29   32   34   37   42   45   48 
LCS_GDT     S      30     S      30      4    9   21     3    3    5    9   11   13   14   14   14   19   21   24   27   29   32   34   37   42   45   48 
LCS_GDT     K      31     K      31      5    9   21     1    4    5    9   11   13   14   14   14   19   21   24   27   29   32   34   37   42   45   48 
LCS_GDT     C      32     C      32      5    9   21     3    4    6    9   11   13   14   14   14   19   21   24   27   29   32   34   37   42   45   50 
LCS_GDT     Q      33     Q      33      5    9   21     3    4    6    9   11   13   14   14   14   19   21   24   27   29   32   34   37   42   45   50 
LCS_GDT     L      34     L      34      5    9   21     3    4    6    9   11   13   14   14   17   19   21   24   27   29   32   34   37   42   45   50 
LCS_GDT     V      35     V      35      5    9   21     3    4    6    9   11   13   14   14   17   19   23   24   27   29   32   35   37   43   47   50 
LCS_GDT     Q      36     Q      36      4    9   21     3    3    6    8   11   13   14   14   15   19   21   24   28   33   37   39   42   46   49   52 
LCS_GDT     D      37     D      37      4    9   21     3    4    6    8   11   13   14   14   15   19   23   27   30   33   37   39   42   46   49   52 
LCS_GDT     E      38     E      38      4    9   21     3    4    5    8   10   12   13   14   15   19   23   27   30   33   37   39   42   46   49   52 
LCS_GDT     S      39     S      39      3    9   21     3    3    5    6   10   10   11   13   16   19   23   27   30   32   37   39   42   46   49   50 
LCS_GDT     I      40     I      40      5    6   21     3    4    5    5   10   10   11   13   16   19   23   27   30   32   37   39   42   46   49   50 
LCS_GDT     E      41     E      41      5    6   21     3    4    5    5   10   10   11   13   16   19   23   27   30   33   37   39   42   46   49   52 
LCS_GDT     F      42     F      42      5    5   21     3    4    5    5    7    9   11   13   15   19   22   25   28   33   37   39   42   46   51   52 
LCS_GDT     N      43     N      43      5   10   21     3    4    5    5    8   11   11   13   16   18   21   24   27   29   32   37   43   46   51   51 
LCS_GDT     P      44     P      44      9   12   21     9   10   12   12   13   15   15   17   18   18   18   21   25   28   31   34   37   42   50   51 
LCS_GDT     E      45     E      45      9   12   21     9   10   12   12   13   15   15   17   18   18   19   23   27   29   32   34   37   41   51   51 
LCS_GDT     F      46     F      46      9   12   21     9   10   12   12   13   15   15   17   18   18   18   23   27   29   36   39   44   46   51   52 
LCS_GDT     L      47     L      47      9   12   21     9   10   12   12   13   15   15   17   18   18   18   23   27   33   36   39   44   46   51   52 
LCS_GDT     L      48     L      48      9   12   21     9   10   12   12   13   15   15   17   18   18   19   23   28   33   36   39   44   46   51   52 
LCS_GDT     N      49     N      49      9   12   21     9   10   12   12   13   15   15   17   18   18   22   25   28   33   36   39   44   46   51   52 
LCS_GDT     I      50     I      50      9   12   21     9   10   12   12   13   15   15   18   19   20   22   25   29   33   37   39   44   46   51   52 
LCS_GDT     V      51     V      51      9   12   21     9   10   12   12   13   15   15   17   18   18   22   25   29   33   37   39   44   46   51   52 
LCS_GDT     D      52     D      52      9   12   21     9   10   12   12   13   15   15   17   18   18   22   25   29   33   37   39   44   46   51   52 
LCS_GDT     R      53     R      53      4   12   21     3    4    5   12   13   15   17   19   20   20   23   27   30   33   37   39   44   46   51   51 
LCS_GDT     V      54     V      54      4   12   21     3    6   12   12   14   17   17   19   22   22   23   27   30   33   37   39   44   46   51   52 
LCS_GDT     D      55     D      55      3   13   21     3   10   11   15   18   19   20   21   22   24   25   27   30   33   37   39   42   48   51   54 
LCS_GDT     W      56     W      56     12   13   21    11   11   11   12   12   12   18   21   22   24   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     P      57     P      57     12   13   21    11   11   11   12   12   12   13   14   17   22   25   28   32   36   39   43   46   48   50   54 
LCS_GDT     A      58     A      58     12   13   21    11   11   11   12   12   12   13   14   17   18   20   26   30   33   36   43   46   48   50   54 
LCS_GDT     V      59     V      59     12   13   21    11   11   11   12   12   12   13   15   19   23   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     L      60     L      60     12   13   21    11   11   11   12   12   12   15   18   20   24   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     T      61     T      61     12   13   21    11   11   11   12   12   12   13   14   17   19   21   23   30   33   36   37   41   45   50   54 
LCS_GDT     V      62     V      62     12   13   21    11   11   11   12   12   12   13   14   17   19   21   24   27   29   33   36   40   45   48   54 
LCS_GDT     A      63     A      63     12   13   21    11   11   11   12   12   12   13   14   17   18   21   23   26   29   31   36   40   45   48   54 
LCS_GDT     A      64     A      64     12   13   21    11   11   11   12   12   12   13   14   17   18   21   23   24   29   30   35   38   42   47   54 
LCS_GDT     E      65     E      65     12   13   21    11   11   11   12   12   12   13   14   17   18   19   21   23   29   29   31   37   40   42   45 
LCS_GDT     L      66     L      66     12   13   21    11   11   11   12   12   12   13   14   17   18   19   21   23   26   28   35   38   40   42   45 
LCS_GDT     G      67     G      67     12   13   21     3    5   10   12   12   12   13   14   15   18   19   21   23   26   28   35   38   40   42   45 
LCS_GDT     N      68     N      68      4   13   22     3    4    5    6    7    9   11   13   15   17   19   21   23   29   29   32   37   40   44   46 
LCS_GDT     N      69     N      69      4    7   22     3    4    5    6    6    8    9   12   15   17   19   21   23   29   29   32   37   39   44   46 
LCS_GDT     A      70     A      70      4    7   22     3    4    5    6    7    8    9   12   15   17   19   21   23   29   29   32   37   39   40   45 
LCS_GDT     L      71     L      71      5    7   22     3    4    6    6    7    8    9   12   15   17   19   21   23   29   29   32   37   39   44   46 
LCS_GDT     P      72     P      72      5    6   22     3    4    6    6    7    8    9   12   15   17   19   21   23   29   29   32   37   39   44   46 
LCS_GDT     P      73     P      73      5    6   22     3    4    6    6    7    8    9   12   12   14   19   21   22   24   28   32   35   39   44   46 
LCS_GDT     T      74     T      74      5    6   22     3    4    6    6    7    8    9   12   13   15   18   21   22   23   28   32   35   39   44   46 
LCS_GDT     K      75     K      75      5    8   22     3    4    6    6    7    8    9   12   13   15   18   19   21   23   25   27   30   34   35   38 
LCS_GDT     P      76     P      76      4    8   22     3    4    5    6    7    8    9   12   13   16   19   21   22   24   26   28   31   33   35   39 
LCS_GDT     S      77     S      77      4    8   22     3    4    4    5    7    8    9   12   15   17   19   21   22   24   26   28   33   34   38   42 
LCS_GDT     F      78     F      78      4    8   22     4    4    5    6    7    9    9   12   15   17   21   23   23   29   30   35   40   45   48   54 
LCS_GDT     P      79     P      79      4    8   28     4    4    5    6    7    8    9   12   19   20   23   26   28   33   36   39   42   48   50   54 
LCS_GDT     S      80     S      80      4    8   28     4    4    6    7    9    9   12   15   19   20   24   28   30   36   39   43   46   48   50   54 
LCS_GDT     S      81     S      81      4    8   28     4    4    6    7    9    9   12   15   19   20   24   28   30   36   38   43   46   48   50   54 
LCS_GDT     I      82     I      82      3    8   28     3    4    5    7    9    9   12   15   19   20   24   28   32   36   39   43   46   48   50   54 
LCS_GDT     Q      83     Q      83      3    5   28     3    3    3    4    7    8   10   14   19   22   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     E      84     E      84      3   19   28     3    3    3    4    9   16   19   21   22   24   25   27   33   36   39   43   46   48   50   54 
LCS_GDT     L      85     L      85     16   20   28     3    3    4    9   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   54 
LCS_GDT     T      86     T      86     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   53 
LCS_GDT     D      87     D      87     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   30   33   38   41   42   48   50   52 
LCS_GDT     D      88     D      88     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   53 
LCS_GDT     D      89     D      89     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   54 
LCS_GDT     M      90     M      90     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   53 
LCS_GDT     A      91     A      91     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   53 
LCS_GDT     I      92     I      92     16   20   28    14   15   15   16   18   19   20   21   22   24   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     L      93     L      93     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   54 
LCS_GDT     N      94     N      94     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   53 
LCS_GDT     D      95     D      95     16   20   28    14   15   15   16   18   19   20   21   22   24   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     L      96     L      96     16   20   28    14   15   15   16   18   19   20   21   22   24   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     H      97     H      97     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   30   36   39   43   46   48   50   53 
LCS_GDT     T      98     T      98     16   20   28    14   15   15   16   18   19   20   21   22   24   25   27   33   36   39   43   46   48   50   54 
LCS_GDT     L      99     L      99     16   20   28    14   15   15   16   18   19   20   21   22   24   25   28   33   36   39   43   46   48   50   54 
LCS_GDT     L     100     L     100     16   20   28     4   15   15   16   18   19   20   21   22   24   25   27   30   36   39   43   46   48   51   54 
LCS_GDT     L     101     L     101     16   20   28     3    8   15   16   17   19   20   21   22   24   25   27   29   36   38   38   41   45   50   52 
LCS_GDT     Q     102     Q     102      4   20   28     3    4    6   10   15   18   20   21   22   24   24   26   28   36   38   39   44   46   51   52 
LCS_GDT     T     103     T     103      5   20   28     3    4    6    8   17   18   20   21   22   24   25   27   29   36   38   39   44   46   51   52 
LCS_GDT     S     104     S     104      5   20   28     4    4   10   16   18   19   20   21   22   24   25   27   30   36   38   39   44   46   51   53 
LCS_GDT     I     105     I     105      5    7   28     4    4    5    7   10   15   18   21   22   23   25   28   33   36   39   43   46   48   51   54 
LCS_GDT     A     106     A     106      5    7   28     4    4    5    7   10   14   18   21   22   23   25   27   30   36   39   43   46   48   50   54 
LCS_GDT     E     107     E     107      5    7   28     4    4    5    7   10   10   11   13   18   22   25   28   33   36   39   43   46   48   51   54 
LCS_GDT     G     108     G     108      5    7   26     3    3    5    7   10   10   11   16   19   20   24   28   30   36   38   43   46   48   51   54 
LCS_GDT     E     109     E     109      3    7   19     2    4    5    7   11   11   13   17   19   20   23   27   30   33   37   39   44   46   51   53 
LCS_GDT     M     110     M     110      3    7   19     3    3    5    7   11   11   13   17   19   20   23   27   30   33   37   40   46   48   51   54 
LCS_GDT     K     111     K     111      4    7   19     3    3    4    7   11   11   13   17   17   19   23   27   30   33   37   39   44   46   51   53 
LCS_GDT     C     112     C     112      4    7   19     3    4    4    6    8   11   12   12   15   19   23   27   30   33   37   39   44   46   51   52 
LCS_GDT     R     113     R     113      5    7   19     3    4    5    6    7    9   10   12   14   16   22   27   30   33   37   39   42   45   49   52 
LCS_GDT     N     114     N     114      5    7   19     4    4    5    6    7    8    9   11   13   19   22   27   30   33   37   39   42   45   49   52 
LCS_GDT     C     115     C     115      5    7   19     4    4    5    6    7    8   10   13   16   19   23   27   30   33   37   39   42   46   49   52 
LCS_GDT     G     116     G     116      5    7   19     4    4    5    6    8    8   10   12   13   16   22   26   30   33   37   39   42   46   49   52 
LCS_GDT     H     117     H     117      5    7   19     4    4    5    6    7    9   11   12   13   14   18   25   30   31   37   39   42   46   49   52 
LCS_GDT     I     118     I     118      3    7   19     3    4    5    7    7   11   12   12   14   15   18   22   27   31   37   39   42   46   51   52 
LCS_GDT     Y     119     Y     119      4    6   19     0    4    5    7    8   11   12   12   15   19   23   27   30   33   37   39   44   46   51   52 
LCS_GDT     Y     120     Y     120      4    6   19     4    4    5    7    7   11   12   13   16   18   23   27   30   33   37   39   44   46   51   54 
LCS_GDT     I     121     I     121      4    6   19     4    4    4    7    8    9   11   13   15   18   21   26   30   33   37   39   44   46   51   54 
LCS_GDT     K     122     K     122      4    6   19     4    4    4    7    8    9   11   13   15   18   21   24   27   33   36   39   44   46   51   53 
LCS_GDT     N     123     N     123      3    6   14     0    3    4    7    7    9   10   12   15   17   22   24   29   33   37   39   44   46   51   54 
LCS_GDT     G     124     G     124      6    7   14     0    5    5    7    7    8   10   12   14   16   18   21   23   27   33   35   38   46   51   53 
LCS_GDT     I     125     I     125      6    7   14     3    5    5    7    7    8   10   12   14   16   18   21   23   24   27   31   36   45   48   52 
LCS_GDT     P     126     P     126      6    7   14     3    3    5    7    7    8   10   12   14   16   18   21   23   24   27   30   33   38   44   52 
LCS_GDT     N     127     N     127      6    7   14     3    5    5    7    7    8   10   12   14   16   18   21   23   24   27   31   34   38   43   52 
LCS_GDT     L     128     L     128      6    7   14     3    5    5    7    7    8   10   12   14   16   18   21   23   24   27   31   34   38   41   44 
LCS_GDT     L     129     L     129      6    7   14     3    5    5    7    7    8   10   12   14   16   18   21   23   24   27   31   34   39   44   52 
LCS_GDT     L     130     L     130      3    7   14     3    3    4    5    6    7    8   12   14   16   18   21   23   24   24   30   34   38   40   44 
LCS_GDT     P     131     P     131      3    5   14     3    3    3    5    6    7    8   11   14   16   17   21   23   24   24   30   33   38   40   43 
LCS_GDT     P     132     P     132      3    5   14     0    3    3    5    6    8    8   10   11   11   12   14   14   17   22   26   30   37   44   52 
LCS_GDT     H     133     H     133      3    5   14     3    3    3    5    6    7    8   10   11   11   12   14   14   17   22   24   28   30   37   43 
LCS_GDT     L     134     L     134      3    5   14     3    3    3    4    5    7    8    9   10   11   12   13   14   15   20   23   24   25   30   32 
LCS_GDT     V     135     V     135      3    4   14     3    3    3    3    6    7    8    9   10   10   12   13   13   15   16   18   21   23   26   32 
LCS_AVERAGE  LCS_A:   9.36  (   4.95    7.29   15.83 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     15     16     18     19     20     21     22     24     25     28     33     36     39     43     46     48     51     54 
GDT PERCENT_CA  10.37  11.11  11.11  11.85  13.33  14.07  14.81  15.56  16.30  17.78  18.52  20.74  24.44  26.67  28.89  31.85  34.07  35.56  37.78  40.00
GDT RMS_LOCAL    0.17   0.32   0.32   0.66   1.29   1.42   1.59   1.80   2.07   2.62   2.94   4.66   4.91   5.31   5.36   5.74   5.98   6.13   6.56   7.18
GDT RMS_ALL_CA  22.62  22.51  22.51  22.41  21.76  21.75  21.83  21.85  22.05  21.30  21.22  18.44  19.00  18.87  18.93  18.96  18.96  19.08  23.72  17.95

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         20.633
LGA    K       2      K       2         19.261
LGA    F       3      F       3         15.961
LGA    L       4      L       4         10.012
LGA    T       5      T       5         10.986
LGA    T       6      T       6         13.601
LGA    N       7      N       7         10.078
LGA    F       8      F       8         12.301
LGA    L       9      L       9         13.157
LGA    K      10      K      10         18.297
LGA    C      11      C      11         23.258
LGA    S      12      S      12         24.618
LGA    V      13      V      13         30.754
LGA    K      14      K      14         30.492
LGA    A      15      A      15         32.702
LGA    C      16      C      16         27.965
LGA    D      17      D      17         24.862
LGA    T      18      T      18         27.403
LGA    S      19      S      19         26.293
LGA    N      20      N      20         22.545
LGA    D      21      D      21         23.329
LGA    N      22      N      22         18.696
LGA    F      23      F      23         17.744
LGA    P      24      P      24         19.547
LGA    L      25      L      25         22.714
LGA    Q      26      Q      26         25.196
LGA    Y      27      Y      27         24.000
LGA    D      28      D      28         29.025
LGA    G      29      G      29         29.772
LGA    S      30      S      30         32.261
LGA    K      31      K      31         28.474
LGA    C      32      C      32         21.264
LGA    Q      33      Q      33         18.766
LGA    L      34      L      34         13.470
LGA    V      35      V      35         12.075
LGA    Q      36      Q      36         11.435
LGA    D      37      D      37         12.860
LGA    E      38      E      38         19.870
LGA    S      39      S      39         24.951
LGA    I      40      I      40         23.129
LGA    E      41      E      41         28.270
LGA    F      42      F      42         25.303
LGA    N      43      N      43         27.196
LGA    P      44      P      44         24.785
LGA    E      45      E      45         27.452
LGA    F      46      F      46         22.077
LGA    L      47      L      47         16.937
LGA    L      48      L      48         20.754
LGA    N      49      N      49         20.199
LGA    I      50      I      50         13.076
LGA    V      51      V      51         11.948
LGA    D      52      D      52         15.047
LGA    R      53      R      53         10.327
LGA    V      54      V      54          4.676
LGA    D      55      D      55          2.715
LGA    W      56      W      56          6.536
LGA    P      57      P      57          7.056
LGA    A      58      A      58          9.286
LGA    V      59      V      59          7.949
LGA    L      60      L      60          7.633
LGA    T      61      T      61          9.977
LGA    V      62      V      62         13.920
LGA    A      63      A      63         13.897
LGA    A      64      A      64         13.815
LGA    E      65      E      65         17.566
LGA    L      66      L      66         20.661
LGA    G      67      G      67         20.268
LGA    N      68      N      68         17.309
LGA    N      69      N      69         15.464
LGA    A      70      A      70         17.062
LGA    L      71      L      71         16.019
LGA    P      72      P      72         15.964
LGA    P      73      P      73         18.817
LGA    T      74      T      74         19.538
LGA    K      75      K      75         23.097
LGA    P      76      P      76         22.406
LGA    S      77      S      77         21.622
LGA    F      78      F      78         17.429
LGA    P      79      P      79         14.930
LGA    S      80      S      80         14.476
LGA    S      81      S      81         16.760
LGA    I      82      I      82         14.978
LGA    Q      83      Q      83         11.789
LGA    E      84      E      84          6.841
LGA    L      85      L      85          3.838
LGA    T      86      T      86          0.373
LGA    D      87      D      87          0.625
LGA    D      88      D      88          0.774
LGA    D      89      D      89          0.573
LGA    M      90      M      90          0.688
LGA    A      91      A      91          0.917
LGA    I      92      I      92          0.635
LGA    L      93      L      93          0.648
LGA    N      94      N      94          0.921
LGA    D      95      D      95          0.705
LGA    L      96      L      96          0.636
LGA    H      97      H      97          0.849
LGA    T      98      T      98          0.743
LGA    L      99      L      99          0.780
LGA    L     100      L     100          0.834
LGA    L     101      L     101          2.136
LGA    Q     102      Q     102          3.890
LGA    T     103      T     103          3.426
LGA    S     104      S     104          3.265
LGA    I     105      I     105          7.932
LGA    A     106      A     106          9.148
LGA    E     107      E     107         14.263
LGA    G     108      G     108         20.652
LGA    E     109      E     109         24.240
LGA    M     110      M     110         22.659
LGA    K     111      K     111         27.923
LGA    C     112      C     112         31.581
LGA    R     113      R     113         35.897
LGA    N     114      N     114         41.300
LGA    C     115      C     115         41.363
LGA    G     116      G     116         38.792
LGA    H     117      H     117         34.366
LGA    I     118      I     118         30.411
LGA    Y     119      Y     119         25.585
LGA    Y     120      Y     120         21.575
LGA    I     121      I     121         20.495
LGA    K     122      K     122         22.870
LGA    N     123      N     123         21.957
LGA    G     124      G     124         22.857
LGA    I     125      I     125         29.421
LGA    P     126      P     126         33.009
LGA    N     127      N     127         39.254
LGA    L     128      L     128         40.530
LGA    L     129      L     129         40.561
LGA    L     130      L     130         39.195
LGA    P     131      P     131         42.693
LGA    P     132      P     132         44.735
LGA    H     133      H     133         43.068
LGA    L     134      L     134         43.803
LGA    V     135      V     135         45.793

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     21    1.80    17.593    14.359     1.106

LGA_LOCAL      RMSD =  1.798  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.048  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 15.916  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.306767 * X  +   0.138295 * Y  +   0.941684 * Z  +  28.829977
  Y_new =  -0.951698 * X  +   0.031196 * Y  +   0.305447 * Z  +  -3.785904
  Z_new =   0.012865 * X  +  -0.989900 * Y  +   0.141185 * Z  +  12.655520 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.429126    1.712466  [ DEG:   -81.8829     98.1171 ]
  Theta =  -0.012866   -3.128727  [ DEG:    -0.7372   -179.2628 ]
  Phi   =  -1.258976    1.882617  [ DEG:   -72.1340    107.8660 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS168_1                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS168_1.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   21   1.80  14.359    15.92
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS168_1
PFRMAT TS
TARGET T0319
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      17.084 -12.931  12.667  1.00 25.00           C
ATOM      2  CA  LYS     2      19.879 -14.812  14.415  1.00 25.00           C
ATOM      3  CA  PHE     3      23.186 -13.115  13.373  1.00 25.00           C
ATOM      4  CA  LEU     4      24.223 -10.008  15.370  1.00 25.00           C
ATOM      5  CA  THR     5      25.640  -6.591  15.970  1.00 25.00           C
ATOM      6  CA  THR     6      27.430  -3.977  18.152  1.00 25.00           C
ATOM      7  CA  ASN     7      24.171  -2.084  18.671  1.00 25.00           C
ATOM      8  CA  PHE     8      23.918   1.243  20.497  1.00 25.00           C
ATOM      9  CA  LEU     9      21.280   2.239  22.964  1.00 25.00           C
ATOM     10  CA  LYS    10      19.975   2.251  26.517  1.00 25.00           C
ATOM     11  CA  CYS    11      21.712  -0.599  28.398  1.00 25.00           C
ATOM     12  CA  SER    12      21.202  -2.525  31.660  1.00 25.00           C
ATOM     13  CA  VAL    13      23.952  -5.213  31.312  1.00 25.00           C
ATOM     14  CA  LYS    14      22.188  -8.480  32.179  1.00 25.00           C
ATOM     15  CA  ALA    15      22.832  -9.748  28.648  1.00 25.00           C
ATOM     16  CA  CYS    16      21.925  -7.617  25.657  1.00 25.00           C
ATOM     17  CA  ASP    17      19.660  -5.784  28.126  1.00 25.00           C
ATOM     18  CA  THR    18      16.832  -5.310  30.603  1.00 25.00           C
ATOM     19  CA  SER    19      14.890  -2.463  28.953  1.00 25.00           C
ATOM     20  CA  ASN    20      12.597  -3.975  26.252  1.00 25.00           C
ATOM     21  CA  ASP    21      15.274  -6.595  25.407  1.00 25.00           C
ATOM     22  CA  ASN    22      17.020  -6.020  22.066  1.00 25.00           C
ATOM     23  CA  PHE    23      19.412  -3.125  22.883  1.00 25.00           C
ATOM     24  CA  PRO    24      23.030  -2.440  23.835  1.00 25.00           C
ATOM     25  CA  LEU    25      26.541  -0.972  23.609  1.00 25.00           C
ATOM     26  CA  GLN    26      27.065  -4.591  22.673  1.00 25.00           C
ATOM     27  CA  TYR    27      26.012  -7.845  21.102  1.00 25.00           C
ATOM     28  CA  ASP    28      26.021 -11.454  19.946  1.00 25.00           C
ATOM     29  CA  GLY    29      24.767 -14.753  18.618  1.00 25.00           C
ATOM     30  CA  SER    30      21.343 -13.328  19.629  1.00 25.00           C
ATOM     31  CA  LYS    31      20.979  -9.542  20.141  1.00 25.00           C
ATOM     32  CA  CYS    32      20.994  -6.138  18.443  1.00 25.00           C
ATOM     33  CA  GLN    33      19.088  -2.871  17.826  1.00 25.00           C
ATOM     34  CA  LEU    34      20.440  -1.092  14.739  1.00 25.00           C
ATOM     35  CA  VAL    35      19.586   2.151  16.475  1.00 25.00           C
ATOM     36  CA  GLN    36      18.627   5.843  15.928  1.00 25.00           C
ATOM     37  CA  ASP    37      17.408   9.437  16.058  1.00 25.00           C
ATOM     38  CA  GLU    38      14.663  11.013  13.939  1.00 25.00           C
ATOM     39  CA  SER    39      11.344  11.664  12.090  1.00 25.00           C
ATOM     40  CA  ILE    40      12.218   8.354  10.417  1.00 25.00           C
ATOM     41  CA  GLU    41      12.241   8.353   6.631  1.00 25.00           C
ATOM     42  CA  PHE    42      16.028   8.217   6.683  1.00 25.00           C
ATOM     43  CA  ASN    43      18.929  10.489   5.787  1.00 25.00           C
ATOM     44  CA  PRO    44      22.433   9.369   6.664  1.00 25.00           C
ATOM     45  CA  GLU    45      22.067   7.264   3.485  1.00 25.00           C
ATOM     46  CA  PHE    46      24.626   4.750   4.827  1.00 25.00           C
ATOM     47  CA  LEU    47      22.723   4.546   8.144  1.00 25.00           C
ATOM     48  CA  LEU    48      19.446   3.949   6.256  1.00 25.00           C
ATOM     49  CA  ASN    49      21.106   1.178   4.200  1.00 25.00           C
ATOM     50  CA  ILE    50      22.427  -0.445   7.407  1.00 25.00           C
ATOM     51  CA  VAL    51      18.927  -0.293   8.955  1.00 25.00           C
ATOM     52  CA  ASP    52      17.442  -1.905   5.814  1.00 25.00           C
ATOM     53  CA  ARG    53      16.305  -4.544   8.322  1.00 25.00           C
ATOM     54  CA  VAL    54      16.682  -4.504  12.079  1.00 25.00           C
ATOM     55  CA  ASP    55      18.182  -8.048  12.251  1.00 25.00           C
ATOM     56  CA  TRP    56      21.510  -6.431  13.070  1.00 25.00           C
ATOM     57  CA  PRO    57      21.186  -4.783   9.629  1.00 25.00           C
ATOM     58  CA  ALA    58      24.788  -3.503   9.874  1.00 25.00           C
ATOM     59  CA  VAL    59      25.996  -7.013  10.816  1.00 25.00           C
ATOM     60  CA  LEU    60      24.110  -8.491   7.828  1.00 25.00           C
ATOM     61  CA  THR    61      25.692  -5.885   5.510  1.00 25.00           C
ATOM     62  CA  VAL    62      29.164  -6.729   6.889  1.00 25.00           C
ATOM     63  CA  ALA    63      28.512 -10.459   6.314  1.00 25.00           C
ATOM     64  CA  ALA    64      27.402  -9.737   2.721  1.00 25.00           C
ATOM     65  CA  GLU    65      30.574  -7.675   2.128  1.00 25.00           C
ATOM     66  CA  LEU    66      32.718 -10.531   3.513  1.00 25.00           C
ATOM     67  CA  GLY    67      32.314 -11.894  -0.056  1.00 25.00           C
ATOM     68  CA  ASN    68      30.676 -12.160  -3.524  1.00 25.00           C
ATOM     69  CA  ASN    69      29.177 -12.598  -6.957  1.00 25.00           C
ATOM     70  CA  ALA    70      30.960 -15.934  -7.575  1.00 25.00           C
ATOM     71  CA  LEU    71      30.029 -18.025  -4.578  1.00 25.00           C
ATOM     72  CA  PRO    72      31.426 -21.472  -5.289  1.00 25.00           C
ATOM     73  CA  PRO    73      33.274 -24.540  -3.959  1.00 25.00           C
ATOM     74  CA  THR    74      36.358 -24.176  -6.212  1.00 25.00           C
ATOM     75  CA  LYS    75      39.821 -22.643  -6.781  1.00 25.00           C
ATOM     76  CA  PRO    76      42.110 -24.938  -4.783  1.00 25.00           C
ATOM     77  CA  SER    77      43.563 -26.834  -1.801  1.00 25.00           C
ATOM     78  CA  PHE    78      40.830 -25.775   0.714  1.00 25.00           C
ATOM     79  CA  PRO    79      40.949 -27.383   4.177  1.00 25.00           C
ATOM     80  CA  SER    80      40.883 -25.033   7.191  1.00 25.00           C
ATOM     81  CA  SER    81      44.616 -25.505   7.754  1.00 25.00           C
ATOM     82  CA  ILE    82      45.323 -22.012   9.083  1.00 25.00           C
ATOM     83  CA  GLN    83      46.869 -18.686   9.976  1.00 25.00           C
ATOM     84  CA  GLU    84      44.482 -18.181  12.838  1.00 25.00           C
ATOM     85  CA  LEU    85      40.640 -18.061  13.092  1.00 25.00           C
ATOM     86  CA  THR    86      40.068 -15.016  10.960  1.00 25.00           C
ATOM     87  CA  ASP    87      41.693 -11.552  11.128  1.00 25.00           C
ATOM     88  CA  ASP    88      39.706 -10.442   8.047  1.00 25.00           C
ATOM     89  CA  ASP    89      36.468 -11.721   9.645  1.00 25.00           C
ATOM     90  CA  MET    90      37.277  -9.814  12.867  1.00 25.00           C
ATOM     91  CA  ALA    91      37.931  -6.628  10.846  1.00 25.00           C
ATOM     92  CA  ILE    92      34.593  -7.069   9.022  1.00 25.00           C
ATOM     93  CA  LEU    93      32.795  -7.532  12.373  1.00 25.00           C
ATOM     94  CA  ASN    94      34.456  -4.358  13.730  1.00 25.00           C
ATOM     95  CA  ASP    95      33.373  -2.427  10.605  1.00 25.00           C
ATOM     96  CA  LEU    96      29.787  -3.700  11.029  1.00 25.00           C
ATOM     97  CA  HIS    97      29.812  -2.618  14.703  1.00 25.00           C
ATOM     98  CA  THR    98      31.087   0.850  13.698  1.00 25.00           C
ATOM     99  CA  LEU    99      28.317   1.135  11.070  1.00 25.00           C
ATOM    100  CA  LEU   100      25.701   0.139  13.684  1.00 25.00           C
ATOM    101  CA  LEU   101      27.077   2.772  16.101  1.00 25.00           C
ATOM    102  CA  GLN   102      26.913   5.425  13.344  1.00 25.00           C
ATOM    103  CA  THR   103      23.241   4.575  13.826  1.00 25.00           C
ATOM    104  CA  SER   104      23.493   5.329  17.561  1.00 25.00           C
ATOM    105  CA  ILE   105      26.021   7.515  19.232  1.00 25.00           C
ATOM    106  CA  ALA   106      24.527   8.388  22.593  1.00 25.00           C
ATOM    107  CA  GLU   107      27.371  10.665  23.603  1.00 25.00           C
ATOM    108  CA  GLY   108      30.315   8.486  24.737  1.00 25.00           C
ATOM    109  CA  GLU   109      31.408   5.262  23.065  1.00 25.00           C
ATOM    110  CA  MET   110      27.731   4.311  23.279  1.00 25.00           C
ATOM    111  CA  LYS   111      27.741   1.747  26.015  1.00 25.00           C
ATOM    112  CA  CYS   112      30.506  -0.794  26.084  1.00 25.00           C
ATOM    113  CA  ARG   113      34.182  -0.084  25.424  1.00 25.00           C
ATOM    114  CA  ASN   114      37.162  -2.406  25.848  1.00 25.00           C
ATOM    115  CA  CYS   115      36.676  -4.702  22.841  1.00 25.00           C
ATOM    116  CA  GLY   116      36.975  -1.715  20.599  1.00 25.00           C
ATOM    117  CA  HIS   117      33.737  -2.329  18.718  1.00 25.00           C
ATOM    118  CA  ILE   118      30.868  -1.434  21.110  1.00 25.00           C
ATOM    119  CA  TYR   119      30.984   1.918  19.225  1.00 25.00           C
ATOM    120  CA  TYR   120      30.675   5.378  17.679  1.00 25.00           C
ATOM    121  CA  ILE   121      33.331   5.307  14.963  1.00 25.00           C
ATOM    122  CA  LYS   122      36.327   7.532  14.399  1.00 25.00           C
ATOM    123  CA  ASN   123      39.010  10.215  14.456  1.00 25.00           C
ATOM    124  CA  GLY   124      40.729  13.284  13.011  1.00 25.00           C
ATOM    125  CA  ILE   125      42.525  13.866   9.724  1.00 25.00           C
ATOM    126  CA  PRO   126      44.519  10.730  10.489  1.00 25.00           C
ATOM    127  CA  ASN   127      46.530   8.752   7.872  1.00 25.00           C
ATOM    128  CA  LEU   128      45.843   7.037   4.548  1.00 25.00           C
ATOM    129  CA  LEU   129      43.334   8.377   2.006  1.00 25.00           C
ATOM    130  CA  LEU   130      42.161   9.456  -1.425  1.00 25.00           C
ATOM    131  CA  PRO   131      43.952   6.716  -3.414  1.00 25.00           C
ATOM    132  CA  PRO   132      45.134   3.185  -4.192  1.00 25.00           C
ATOM    133  CA  HIS   133      46.620  -0.307  -4.173  1.00 25.00           C
ATOM    134  CA  LEU   134      50.016  -0.151  -5.732  1.00 25.00           C
ATOM    135  CA  VAL   135      50.778   3.516  -5.346  1.00 25.00           C
TER
END
