
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_1
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_1.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        32 - 78          4.81    16.92
  LONGEST_CONTINUOUS_SEGMENT:    47        33 - 79          4.72    17.02
  LONGEST_CONTINUOUS_SEGMENT:    47        34 - 80          4.93    17.12
  LCS_AVERAGE:     26.45

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        37 - 77          1.98    17.68
  LCS_AVERAGE:     17.08

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30        39 - 68          0.84    17.64
  LCS_AVERAGE:     10.28

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      3    5   18     3    4    5    5    5    5   10   13   16   20   25   26   27   28   32   35   35   37   39   45 
LCS_GDT     K       2     K       2      3    5   21     3    4    5    5    5    5   10   12   16   21   25   26   27   29   39   44   52   53   59   65 
LCS_GDT     F       3     F       3      7    8   21     4    4    7    7    7   11   13   15   17   21   25   26   29   35   40   49   52   56   62   66 
LCS_GDT     L       4     L       4      7    8   21     4    6    7    7    7   10   13   15   17   22   25   30   33   36   40   49   52   56   62   66 
LCS_GDT     T       5     T       5      7    8   21     5    6    7    9   10   13   16   19   21   23   25   28   29   31   38   42   45   53   55   59 
LCS_GDT     T       6     T       6      7    8   21     5    6    7    9   10   13   16   19   21   23   25   28   32   35   39   49   52   53   56   59 
LCS_GDT     N       7     N       7      7    8   21     5    6    7    7    7   11   15   19   21   23   25   28   31   36   40   49   52   55   59   66 
LCS_GDT     F       8     F       8      7    8   21     5    6    7    7    9   12   16   19   21   23   25   28   30   35   38   41   44   49   55   59 
LCS_GDT     L       9     L       9      7    8   21     5    6    7    7    8   11   15   19   21   23   25   28   29   31   36   38   43   47   51   53 
LCS_GDT     K      10     K      10      3    8   21     3    3    4    6    7    9   15   18   21   23   25   33   35   37   39   41   45   48   51   54 
LCS_GDT     C      11     C      11      4    6   21     3    4    4    5    5    9   15   19   21   23   25   28   29   31   36   41   45   48   51   54 
LCS_GDT     S      12     S      12      4    6   21     3    4    5    9   10   13   16   19   21   23   25   28   29   32   36   40   43   50   55   59 
LCS_GDT     V      13     V      13      4    6   21     3    4    4    5    7   13   16   19   21   23   25   28   29   31   35   38   43   47   51   56 
LCS_GDT     K      14     K      14      4    6   21     3    4    5    9   10   13   16   19   21   23   25   28   29   31   35   38   44   50   52   59 
LCS_GDT     A      15     A      15      4    6   21     3    4    5    9   10   13   16   19   21   23   25   28   29   31   35   38   44   50   52   59 
LCS_GDT     C      16     C      16      4    6   21     3    4    5    9   10   13   16   19   21   23   25   28   30   32   38   42   45   50   55   59 
LCS_GDT     D      17     D      17      3    6   22     3    3    4    5    6    6   11   13   19   22   25   28   30   36   40   49   52   53   59   62 
LCS_GDT     T      18     T      18      5    6   22     3    5    5    5    7   13   16   19   21   23   25   28   30   35   40   49   50   53   55   59 
LCS_GDT     S      19     S      19      5    6   22     3    5    5    6   10   13   16   18   19   21   25   28   31   36   40   49   52   53   59   62 
LCS_GDT     N      20     N      20      5    6   22     3    5    5    5   10   13   16   18   19   21   25   28   31   36   40   49   52   53   59   62 
LCS_GDT     D      21     D      21      5    6   22     3    5    5    5   10   13   16   18   19   21   25   28   31   36   40   49   52   56   63   66 
LCS_GDT     N      22     N      22      5    6   22     3    5    5    7   10   12   15   18   19   22   25   30   33   38   48   51   58   60   63   66 
LCS_GDT     F      23     F      23      6   11   22     0    3    6   10   11   13   16   18   19   22   25   30   33   41   48   51   58   60   63   66 
LCS_GDT     P      24     P      24      6   11   22     3    5    6    9   11   11   12   15   16   20   23   27   32   41   48   51   58   60   63   66 
LCS_GDT     L      25     L      25      6   11   22     4    5    6   10   11   11   12   15   17   20   24   26   34   40   47   51   55   59   63   66 
LCS_GDT     Q      26     Q      26      6   11   22     4    5    6   10   11   11   12   15   18   26   31   33   35   37   39   43   47   53   59   62 
LCS_GDT     Y      27     Y      27      6   11   22     4    5    6   10   13   17   25   27   29   31   32   33   35   40   44   49   54   59   60   62 
LCS_GDT     D      28     D      28      6   11   25     5    5    6   10   15   18   25   27   29   31   32   33   35   38   40   44   47   53   55   60 
LCS_GDT     G      29     G      29      6   11   25     5    5    6   10   12   15   18   21   24   28   31   32   35   38   40   44   48   53   56   60 
LCS_GDT     S      30     S      30      6   11   25     5    5    6   10   12   15   18   21   24   27   29   31   32   37   40   41   45   51   56   57 
LCS_GDT     K      31     K      31      6   11   26     5    5    6   10   11   11   14   20   24   27   27   28   30   34   36   40   44   51   56   57 
LCS_GDT     C      32     C      32      6   11   47     5    5    6   10   11   11   17   20   24   27   27   29   35   41   48   51   55   59   63   66 
LCS_GDT     Q      33     Q      33      6   11   47     3    3    6   10   11   11   12   20   24   27   29   34   38   41   48   51   58   60   63   66 
LCS_GDT     L      34     L      34      3    3   47     3    3    5    7    7    9   12   13   17   20   23   29   34   41   48   51   55   59   60   62 
LCS_GDT     V      35     V      35      3    3   47     0    3    3    4    6    8   14   19   22   30   35   39   42   45   48   51   58   60   63   66 
LCS_GDT     Q      36     Q      36      3    4   47     3    3    8   11   17   23   29   33   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     D      37     D      37      3   41   47     3    3    3    7    9   17   22   30   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     E      38     E      38      3   41   47     3    4    4    5    5   17   25   32   40   43   44   44   46   46   48   51   58   60   63   66 
LCS_GDT     S      39     S      39     30   41   47    13   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     I      40     I      40     30   41   47     4    9   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     E      41     E      41     30   41   47     4   17   28   31   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     F      42     F      42     30   41   47     4    6   27   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     N      43     N      43     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     P      44     P      44     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     E      45     E      45     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   54   59   63   65 
LCS_GDT     F      46     F      46     30   41   47    12   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   55   60   63   65 
LCS_GDT     L      47     L      47     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     L      48     L      48     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     N      49     N      49     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     I      50     I      50     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     V      51     V      51     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     D      52     D      52     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     R      53     R      53     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     V      54     V      54     30   41   47    12   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     D      55     D      55     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     W      56     W      56     30   41   47     8   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     P      57     P      57     30   41   47     9   20   28   33   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     A      58     A      58     30   41   47    13   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     V      59     V      59     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     L      60     L      60     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     T      61     T      61     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     V      62     V      62     30   41   47    12   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     A      63     A      63     30   41   47    12   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     A      64     A      64     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     E      65     E      65     30   41   47    14   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   55   60   63   66 
LCS_GDT     L      66     L      66     30   41   47    12   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     G      67     G      67     30   41   47    13   25   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     N      68     N      68     30   41   47     4   24   28   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     N      69     N      69     29   41   47     4    9   21   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     A      70     A      70     10   41   47     4   13   21   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     L      71     L      71     10   41   47     4   14   27   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     P      72     P      72      8   41   47     4   14   27   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     P      73     P      73      8   41   47     4    7   22   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     T      74     T      74      8   41   47     4   13   22   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     K      75     K      75      8   41   47     4    5   23   34   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     P      76     P      76      8   41   47     4   12   28   33   38   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     S      77     S      77      6   41   47     5    7   11   31   37   39   39   39   40   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     F      78     F      78      6   26   47     5    5    6    7    9   22   25   27   29   37   40   40   42   43   45   47   49   56   59   61 
LCS_GDT     P      79     P      79      6   26   47     5   14   16   19   21   23   25   27   29   31   32   36   41   42   43   45   46   51   56   57 
LCS_GDT     S      80     S      80      6   26   47     5    7   13   19   21   23   25   27   29   31   32   33   35   38   40   42   45   48   56   57 
LCS_GDT     S      81     S      81      6   26   37     5    5   16   19   21   23   25   27   29   31   32   33   35   38   40   42   45   48   56   57 
LCS_GDT     I      82     I      82      6   26   37     5    5    6    8   11   15   25   27   29   31   32   33   35   37   40   42   45   51   56   57 
LCS_GDT     Q      83     Q      83      6   26   37     5    5    6    8   11   15   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     E      84     E      84     18   26   37     7   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     L      85     L      85     18   26   37     5    5    6   13   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     T      86     T      86     18   26   37     3   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     D      87     D      87     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     D      88     D      88     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     D      89     D      89     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     M      90     M      90     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     A      91     A      91     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     I      92     I      92     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     L      93     L      93     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     N      94     N      94     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     D      95     D      95     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     L      96     L      96     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     H      97     H      97     18   26   37    11   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     T      98     T      98     18   26   37    12   14   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     L      99     L      99     18   26   37    12   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     L     100     L     100     18   26   37     9   15   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     L     101     L     101     18   26   37     4    8   17   19   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     Q     102     Q     102      7   26   37     3    5    8   14   19   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     T     103     T     103      7   26   37     3    7   13   18   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     S     104     S     104      7   26   37     3    5    7   18   21   23   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     I     105     I     105      7   22   37     3    5   10   14   18   21   25   27   29   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     A     106     A     106      5   12   37     3    5    8   11   12   16   20   22   27   31   32   33   35   38   40   42   45   51   56   57 
LCS_GDT     E     107     E     107      5   18   37     1    5    8   11   13   16   19   34   38   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     G     108     G     108     15   18   37     3   10   15   16   17   17   23   35   37   43   44   45   46   46   48   51   58   60   63   66 
LCS_GDT     E     109     E     109     15   18   37     5   10   15   16   17   17   17   21   29   31   42   45   46   46   48   51   58   60   63   66 
LCS_GDT     M     110     M     110     15   18   37     4   10   15   16   17   17   18   21   29   31   36   45   46   46   48   51   58   60   63   66 
LCS_GDT     K     111     K     111     15   18   36     4   10   15   16   17   17   18   21   24   27   29   39   43   46   48   51   58   60   63   66 
LCS_GDT     C     112     C     112     15   18   29     6   10   15   16   17   17   18   21   24   27   29   39   43   46   48   51   58   60   63   66 
LCS_GDT     R     113     R     113     15   18   29     6   10   15   16   17   17   18   21   24   27   27   29   35   41   48   51   58   60   63   66 
LCS_GDT     N     114     N     114     15   18   29     6   10   15   16   17   17   18   21   24   27   27   29   35   41   48   51   58   60   63   66 
LCS_GDT     C     115     C     115     15   18   29     6   10   15   16   17   17   18   21   24   27   27   30   33   41   48   51   58   60   63   66 
LCS_GDT     G     116     G     116     15   18   29     6   10   15   16   17   17   18   21   24   27   27   28   31   41   48   51   55   60   63   66 
LCS_GDT     H     117     H     117     15   18   29     6   10   15   16   17   17   18   21   24   27   27   30   33   40   48   51   58   60   63   66 
LCS_GDT     I     118     I     118     15   18   29     6   10   15   16   17   17   18   21   24   27   27   30   33   41   48   51   58   60   63   66 
LCS_GDT     Y     119     Y     119     15   18   29     6   10   15   16   17   17   18   21   24   27   27   30   33   39   48   51   58   60   63   66 
LCS_GDT     Y     120     Y     120     15   18   29     5   10   15   16   17   17   18   21   24   27   27   30   33   39   46   51   58   60   63   66 
LCS_GDT     I     121     I     121     15   18   29     4    9   15   16   17   17   18   21   24   27   27   30   36   44   47   51   58   60   63   66 
LCS_GDT     K     122     K     122     15   18   29     3   10   15   16   17   17   18   21   24   27   27   28   29   32   36   49   52   53   56   61 
LCS_GDT     N     123     N     123      5   18   29     3    6    9   16   17   17   18   21   24   27   27   28   29   32   33   34   40   50   52   56 
LCS_GDT     G     124     G     124      5   18   29     3    5    9   12   17   17   17   18   19   19   22   25   29   32   33   35   41   50   52   56 
LCS_GDT     I     125     I     125      4   18   29     3    3    5    9   13   16   18   21   24   27   27   28   29   44   46   47   48   50   51   56 
LCS_GDT     P     126     P     126      4    7   29     3    3    5    7   11   12   13   21   40   40   40   41   43   45   46   47   48   51   56   57 
LCS_GDT     N     127     N     127      4    8   29     3    3    4    5    7    9   10   15   16   20   21   25   28   30   34   35   35   37   40   51 
LCS_GDT     L     128     L     128      6    8   29     3    5    6    6    7    9    9   15   23   27   27   28   29   32   34   46   48   50   51   54 
LCS_GDT     L     129     L     129      6    8   29     3    5    6    6    7   14   18   21   24   27   27   28   43   45   46   47   48   51   56   57 
LCS_GDT     L     130     L     130      6    8   29     4    5    6    9   12   15   17   22   25   31   35   41   43   45   46   47   48   51   56   57 
LCS_GDT     P     131     P     131      6    8   29     4    5    6    9   12   15   17   21   24   27   31   36   40   44   46   47   48   51   56   57 
LCS_GDT     P     132     P     132      6    8   29     4    5    6    9   10   12   15   15   17   23   29   31   35   40   46   47   48   50   56   56 
LCS_GDT     H     133     H     133      6    8   29     4    5    6    7    7    9   10   15   16   20   22   27   33   34   38   42   45   51   56   57 
LCS_GDT     L     134     L     134      4    8   29     0    3    4    7    8   11   14   18   19   19   26   28   33   35   38   42   45   51   56   57 
LCS_GDT     V     135     V     135      3    5   28     0    3    3    5    8    8   11   14   18   18   22   27   33   37   38   45   46   51   56   57 
LCS_AVERAGE  LCS_A:  17.94  (  10.28   17.08   26.45 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     25     28     34     38     39     39     39     40     43     44     45     46     46     48     51     58     60     63     66 
GDT PERCENT_CA  10.37  18.52  20.74  25.19  28.15  28.89  28.89  28.89  29.63  31.85  32.59  33.33  34.07  34.07  35.56  37.78  42.96  44.44  46.67  48.89
GDT RMS_LOCAL    0.33   0.59   0.73   1.21   1.38   1.47   1.47   1.47   1.77   2.45   2.66   3.37   3.41   3.41   4.18   5.65   6.22   6.28   6.54   6.85
GDT RMS_ALL_CA  17.68  17.68  17.65  17.76  17.73  17.71  17.71  17.71  17.82  17.55  17.45  17.16  17.18  17.18  16.93  16.70  16.77  16.76  16.78  16.91

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         21.478
LGA    K       2      K       2         13.871
LGA    F       3      F       3         11.029
LGA    L       4      L       4         12.188
LGA    T       5      T       5         15.952
LGA    T       6      T       6         12.597
LGA    N       7      N       7         12.790
LGA    F       8      F       8         18.852
LGA    L       9      L       9         20.090
LGA    K      10      K      10         20.472
LGA    C      11      C      11         24.810
LGA    S      12      S      12         24.585
LGA    V      13      V      13         27.986
LGA    K      14      K      14         30.656
LGA    A      15      A      15         31.728
LGA    C      16      C      16         28.145
LGA    D      17      D      17         24.802
LGA    T      18      T      18         26.646
LGA    S      19      S      19         25.983
LGA    N      20      N      20         23.583
LGA    D      21      D      21         21.892
LGA    N      22      N      22         18.002
LGA    F      23      F      23         17.325
LGA    P      24      P      24         18.007
LGA    L      25      L      25         19.665
LGA    Q      26      Q      26         24.083
LGA    Y      27      Y      27         21.796
LGA    D      28      D      28         26.588
LGA    G      29      G      29         25.292
LGA    S      30      S      30         29.250
LGA    K      31      K      31         26.413
LGA    C      32      C      32         19.382
LGA    Q      33      Q      33         17.110
LGA    L      34      L      34         17.730
LGA    V      35      V      35         13.249
LGA    Q      36      Q      36          8.137
LGA    D      37      D      37          6.265
LGA    E      38      E      38          6.886
LGA    S      39      S      39          0.524
LGA    I      40      I      40          1.484
LGA    E      41      E      41          2.261
LGA    F      42      F      42          1.628
LGA    N      43      N      43          0.582
LGA    P      44      P      44          0.266
LGA    E      45      E      45          0.661
LGA    F      46      F      46          0.897
LGA    L      47      L      47          0.558
LGA    L      48      L      48          0.212
LGA    N      49      N      49          0.327
LGA    I      50      I      50          0.199
LGA    V      51      V      51          0.393
LGA    D      52      D      52          0.652
LGA    R      53      R      53          0.503
LGA    V      54      V      54          0.865
LGA    D      55      D      55          0.943
LGA    W      56      W      56          1.439
LGA    P      57      P      57          1.929
LGA    A      58      A      58          1.200
LGA    V      59      V      59          0.861
LGA    L      60      L      60          1.230
LGA    T      61      T      61          0.809
LGA    V      62      V      62          0.839
LGA    A      63      A      63          1.206
LGA    A      64      A      64          1.358
LGA    E      65      E      65          0.798
LGA    L      66      L      66          1.097
LGA    G      67      G      67          1.335
LGA    N      68      N      68          0.738
LGA    N      69      N      69          2.506
LGA    A      70      A      70          2.656
LGA    L      71      L      71          1.838
LGA    P      72      P      72          2.077
LGA    P      73      P      73          2.631
LGA    T      74      T      74          1.959
LGA    K      75      K      75          1.829
LGA    P      76      P      76          2.140
LGA    S      77      S      77          3.301
LGA    F      78      F      78         10.427
LGA    P      79      P      79         14.747
LGA    S      80      S      80         18.833
LGA    S      81      S      81         24.907
LGA    I      82      I      82         25.847
LGA    Q      83      Q      83         31.594
LGA    E      84      E      84         27.483
LGA    L      85      L      85         24.386
LGA    T      86      T      86         28.971
LGA    D      87      D      87         33.012
LGA    D      88      D      88         28.928
LGA    D      89      D      89         24.004
LGA    M      90      M      90         29.498
LGA    A      91      A      91         31.537
LGA    I      92      I      92         24.851
LGA    L      93      L      93         23.912
LGA    N      94      N      94         30.076
LGA    D      95      D      95         28.167
LGA    L      96      L      96         21.309
LGA    H      97      H      97         25.000
LGA    T      98      T      98         28.753
LGA    L      99      L      99         23.411
LGA    L     100      L     100         18.913
LGA    L     101      L     101         24.209
LGA    Q     102      Q     102         27.109
LGA    T     103      T     103         22.374
LGA    S     104      S     104         19.158
LGA    I     105      I     105         14.301
LGA    A     106      A     106         13.320
LGA    E     107      E     107          9.085
LGA    G     108      G     108          9.408
LGA    E     109      E     109         13.463
LGA    M     110      M     110         13.669
LGA    K     111      K     111         17.080
LGA    C     112      C     112         16.970
LGA    R     113      R     113         20.954
LGA    N     114      N     114         21.666
LGA    C     115      C     115         24.456
LGA    G     116      G     116         25.830
LGA    H     117      H     117         23.214
LGA    I     118      I     118         21.420
LGA    Y     119      Y     119         16.780
LGA    Y     120      Y     120         14.987
LGA    I     121      I     121         11.056
LGA    K     122      K     122         11.448
LGA    N     123      N     123         12.689
LGA    G     124      G     124         11.030
LGA    I     125      I     125          9.036
LGA    P     126      P     126          6.621
LGA    N     127      N     127         12.793
LGA    L     128      L     128         10.962
LGA    L     129      L     129         10.228
LGA    L     130      L     130         11.447
LGA    P     131      P     131         13.746
LGA    P     132      P     132         16.121
LGA    H     133      H     133         20.241
LGA    L     134      L     134         17.505
LGA    V     135      V     135         16.652

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     39    1.47    27.593    25.666     2.491

LGA_LOCAL      RMSD =  1.466  Number of atoms =   39  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.713  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 15.159  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.909618 * X  +   0.393917 * Y  +  -0.132003 * Z  +  18.583279
  Y_new =   0.165799 * X  +   0.635543 * Y  +   0.754053 * Z  +  -4.036983
  Z_new =   0.380928 * X  +   0.664014 * Y  +  -0.643412 * Z  +  15.578732 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.340438   -0.801155  [ DEG:   134.0972    -45.9028 ]
  Theta =  -0.390800   -2.750793  [ DEG:   -22.3912   -157.6088 ]
  Phi   =   2.961298   -0.180294  [ DEG:   169.6699    -10.3301 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_1                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_1.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   39   1.47  25.666    15.16
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_1
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      34.462  -6.661  11.162  1.00  0.00              
ATOM      2  CA  LYS     2      30.687  -5.437  12.570  1.00  0.00              
ATOM      3  CA  PHE     3      28.144  -5.035   9.296  1.00  0.00              
ATOM      4  CA  LEU     4      31.404  -4.589  10.705  1.00  0.00              
ATOM      5  CA  THR     5      32.026  -0.873  10.095  1.00  0.00              
ATOM      6  CA  THR     6      28.529   0.254  11.159  1.00  0.00              
ATOM      7  CA  ASN     7      28.779  -1.794  14.382  1.00  0.00              
ATOM      8  CA  PHE     8      32.199  -0.393  15.326  1.00  0.00              
ATOM      9  CA  LEU     9      31.045   3.225  14.824  1.00  0.00              
ATOM     10  CA  LYS    10      27.727   2.755  16.711  1.00  0.00              
ATOM     11  CA  CYS    11      28.547   0.769  19.880  1.00  0.00              
ATOM     12  CA  SER    12      26.588   1.880  22.870  1.00  0.00              
ATOM     13  CA  VAL    13      25.306  -1.196  24.607  1.00  0.00              
ATOM     14  CA  LYS    14      25.726  -1.203  28.337  1.00  0.00              
ATOM     15  CA  ALA    15      22.449  -2.694  29.534  1.00  0.00              
ATOM     16  CA  CYS    16      21.860  -5.225  26.815  1.00  0.00              
ATOM     17  CA  ASP    17      19.607  -8.088  27.731  1.00  0.00              
ATOM     18  CA  THR    18      20.003 -11.201  25.722  1.00  0.00              
ATOM     19  CA  SER    19      16.751 -13.106  25.883  1.00  0.00              
ATOM     20  CA  ASN    20      17.110 -15.557  23.037  1.00  0.00              
ATOM     21  CA  ASP    21      14.262 -14.473  20.865  1.00  0.00              
ATOM     22  CA  ASN    22      15.298 -11.046  19.809  1.00  0.00              
ATOM     23  CA  PHE    23      17.587  -9.059  22.022  1.00  0.00              
ATOM     24  CA  PRO    24      16.435  -6.716  24.584  1.00  0.00              
ATOM     25  CA  LEU    25      18.458  -3.495  24.987  1.00  0.00              
ATOM     26  CA  GLN    26      17.638  -1.152  27.722  1.00  0.00              
ATOM     27  CA  TYR    27      18.411   2.527  27.288  1.00  0.00              
ATOM     28  CA  ASP    28      18.177   4.834  30.264  1.00  0.00              
ATOM     29  CA  GLY    29      18.534   8.534  29.232  1.00  0.00              
ATOM     30  CA  SER    30      21.567   9.372  31.340  1.00  0.00              
ATOM     31  CA  LYS    31      23.350   6.153  30.194  1.00  0.00              
ATOM     32  CA  CYS    32      22.735   6.627  26.529  1.00  0.00              
ATOM     33  CA  GLN    33      24.109  10.195  26.630  1.00  0.00              
ATOM     34  CA  LEU    34      27.225   9.022  28.501  1.00  0.00              
ATOM     35  CA  VAL    35      27.855   6.173  26.040  1.00  0.00              
ATOM     36  CA  GLN    36      27.543   8.356  22.914  1.00  0.00              
ATOM     37  CA  ASP    37      30.114  10.708  24.467  1.00  0.00              
ATOM     38  CA  GLU    38      32.517   7.941  25.552  1.00  0.00              
ATOM     39  CA  SER    39      32.919   6.037  22.320  1.00  0.00              
ATOM     40  CA  ILE    40      32.315   2.457  23.274  1.00  0.00              
ATOM     41  CA  GLU    41      34.446   0.504  20.852  1.00  0.00              
ATOM     42  CA  PHE    42      32.687  -2.646  19.833  1.00  0.00              
ATOM     43  CA  ASN    43      33.522  -5.806  21.731  1.00  0.00              
ATOM     44  CA  PRO    44      33.291  -8.770  19.423  1.00  0.00              
ATOM     45  CA  GLU    45      30.810 -10.652  21.637  1.00  0.00              
ATOM     46  CA  PHE    46      28.223  -7.806  21.592  1.00  0.00              
ATOM     47  CA  LEU    47      28.588  -7.388  17.867  1.00  0.00              
ATOM     48  CA  LEU    48      28.173 -11.112  17.226  1.00  0.00              
ATOM     49  CA  ASN    49      25.097 -11.278  19.395  1.00  0.00              
ATOM     50  CA  ILE    50      23.657  -8.265  17.566  1.00  0.00              
ATOM     51  CA  VAL    51      24.411  -9.895  14.189  1.00  0.00              
ATOM     52  CA  ASP    52      22.821 -13.181  15.289  1.00  0.00              
ATOM     53  CA  ARG    53      19.477 -11.385  15.952  1.00  0.00              
ATOM     54  CA  VAL    54      19.502  -9.159  12.951  1.00  0.00              
ATOM     55  CA  ASP    55      16.445  -8.955  10.702  1.00  0.00              
ATOM     56  CA  TRP    56      18.174  -8.879   7.368  1.00  0.00              
ATOM     57  CA  PRO    57      15.466  -7.267   5.304  1.00  0.00              
ATOM     58  CA  ALA    58      15.357  -4.297   7.604  1.00  0.00              
ATOM     59  CA  VAL    59      19.093  -3.908   7.700  1.00  0.00              
ATOM     60  CA  LEU    60      19.488  -4.019   3.959  1.00  0.00              
ATOM     61  CA  THR    61      16.823  -1.421   3.509  1.00  0.00              
ATOM     62  CA  VAL    62      18.387   0.830   6.109  1.00  0.00              
ATOM     63  CA  ALA    63      21.881   0.572   4.516  1.00  0.00              
ATOM     64  CA  ALA    64      20.446   1.337   1.115  1.00  0.00              
ATOM     65  CA  GLU    65      18.495   4.397   2.366  1.00  0.00              
ATOM     66  CA  LEU    66      21.582   5.768   4.119  1.00  0.00              
ATOM     67  CA  GLY    67      24.013   5.332   1.271  1.00  0.00              
ATOM     68  CA  ASN    68      26.439   2.947   3.056  1.00  0.00              
ATOM     69  CA  ASN    69      28.381   1.526   0.166  1.00  0.00              
ATOM     70  CA  ALA    70      30.828  -0.363   2.444  1.00  0.00              
ATOM     71  CA  LEU    71      28.245  -2.861   3.732  1.00  0.00              
ATOM     72  CA  PRO    72      28.494  -6.324   2.317  1.00  0.00              
ATOM     73  CA  PRO    73      25.718  -7.147  -0.092  1.00  0.00              
ATOM     74  CA  THR    74      24.207 -10.111   1.611  1.00  0.00              
ATOM     75  CA  LYS    75      25.149 -10.077   5.305  1.00  0.00              
ATOM     76  CA  PRO    76      27.031 -13.353   5.794  1.00  0.00              
ATOM     77  CA  SER    77      25.202 -15.046   8.635  1.00  0.00              
ATOM     78  CA  PHE    78      21.757 -14.766   6.993  1.00  0.00              
ATOM     79  CA  PRO    79      19.776 -17.818   5.997  1.00  0.00              
ATOM     80  CA  SER    80      19.474 -17.559   2.258  1.00  0.00              
ATOM     81  CA  SER    81      15.882 -16.437   2.003  1.00  0.00              
ATOM     82  CA  ILE    82      14.143 -17.083   5.336  1.00  0.00              
ATOM     83  CA  GLN    83      11.553 -19.318   3.591  1.00  0.00              
ATOM     84  CA  GLU    84      14.200 -21.688   2.259  1.00  0.00              
ATOM     85  CA  LEU    85      15.798 -22.437   5.609  1.00  0.00              
ATOM     86  CA  THR    86      12.620 -23.179   7.236  1.00  0.00              
ATOM     87  CA  ASP    87      11.063 -23.830  10.467  1.00  0.00              
ATOM     88  CA  ASP    88      12.967 -22.011  13.252  1.00  0.00              
ATOM     89  CA  ASP    89      13.318 -19.011  10.886  1.00  0.00              
ATOM     90  CA  MET    90       9.617 -18.694  10.332  1.00  0.00              
ATOM     91  CA  ALA    91       8.796 -18.628  14.068  1.00  0.00              
ATOM     92  CA  ILE    92      11.402 -15.955  14.693  1.00  0.00              
ATOM     93  CA  LEU    93      10.128 -13.838  11.872  1.00  0.00              
ATOM     94  CA  ASN    94       6.513 -14.049  13.085  1.00  0.00              
ATOM     95  CA  ASP    95       7.556 -12.956  16.589  1.00  0.00              
ATOM     96  CA  LEU    96       9.510 -10.017  15.116  1.00  0.00              
ATOM     97  CA  HIS    97       6.479  -9.079  13.021  1.00  0.00              
ATOM     98  CA  THR    98       4.211  -9.155  16.045  1.00  0.00              
ATOM     99  CA  LEU    99       6.616  -6.962  18.036  1.00  0.00              
ATOM    100  CA  LEU   100       6.770  -4.436  15.183  1.00  0.00              
ATOM    101  CA  LEU   101       2.977  -4.253  14.794  1.00  0.00              
ATOM    102  CA  GLN   102       2.691  -3.205  18.496  1.00  0.00              
ATOM    103  CA  THR   103       5.675  -0.916  18.728  1.00  0.00              
ATOM    104  CA  SER   104       5.736   2.548  20.121  1.00  0.00              
ATOM    105  CA  ILE   105       8.210   4.812  18.611  1.00  0.00              
ATOM    106  CA  ALA   106       9.525   7.760  20.488  1.00  0.00              
ATOM    107  CA  GLU   107      12.388   9.813  19.032  1.00  0.00              
ATOM    108  CA  GLY   108      14.765   7.033  18.057  1.00  0.00              
ATOM    109  CA  GLU   109      13.672   4.955  21.007  1.00  0.00              
ATOM    110  CA  MET   110      11.595   1.899  20.540  1.00  0.00              
ATOM    111  CA  LYS   111       9.188   0.800  23.152  1.00  0.00              
ATOM    112  CA  CYS   112       7.285  -2.426  22.988  1.00  0.00              
ATOM    113  CA  ARG   113       3.712  -2.153  24.287  1.00  0.00              
ATOM    114  CA  ASN   114       3.235  -5.806  24.976  1.00  0.00              
ATOM    115  CA  CYS   115       6.435  -6.960  26.538  1.00  0.00              
ATOM    116  CA  GLY   116       7.870  -3.783  27.916  1.00  0.00              
ATOM    117  CA  HIS   117      11.271  -4.182  26.401  1.00  0.00              
ATOM    118  CA  ILE   118      13.135  -1.018  25.642  1.00  0.00              
ATOM    119  CA  TYR   119      15.266  -0.894  22.559  1.00  0.00              
ATOM    120  CA  TYR   120      17.676   2.005  21.958  1.00  0.00              
ATOM    121  CA  ILE   121      18.816   2.511  18.458  1.00  0.00              
ATOM    122  CA  LYS   122      20.930   5.250  17.257  1.00  0.00              
ATOM    123  CA  ASN   123      21.520   4.500  13.522  1.00  0.00              
ATOM    124  CA  GLY   124      18.678   2.124  12.961  1.00  0.00              
ATOM    125  CA  ILE   125      15.591   3.841  14.199  1.00  0.00              
ATOM    126  CA  PRO   126      14.993   6.987  12.280  1.00  0.00              
ATOM    127  CA  ASN   127      15.459   4.945   9.053  1.00  0.00              
ATOM    128  CA  LEU   128      13.075   2.059   9.839  1.00  0.00              
ATOM    129  CA  LEU   129      10.154   3.873  11.412  1.00  0.00              
ATOM    130  CA  LEU   130       7.180   1.448  11.082  1.00  0.00              
ATOM    131  CA  PRO   131       3.684   2.753  11.685  1.00  0.00              
ATOM    132  CA  PRO   132       1.790   0.742  14.370  1.00  0.00              
ATOM    133  CA  HIS   133      -0.401  -0.837  11.220  1.00  0.00              
ATOM    134  CA  LEU   134       2.791  -1.825   9.267  1.00  0.00              
ATOM    135  CA  VAL   135       5.986  -1.151   7.018  1.00  0.00              
TER                                                                             
END
