
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_4
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_4.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        31 - 77          4.92    19.02
  LONGEST_CONTINUOUS_SEGMENT:    47        32 - 78          4.81    19.13
  LCS_AVERAGE:     27.16

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34        36 - 69          1.89    19.59
  LCS_AVERAGE:     14.83

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        42 - 68          0.87    19.79
  LCS_AVERAGE:      9.49

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      3    3   23     4   15   23   29   30   32   35   37   39   39   41   43   46   48   52   54   57   60   63   66 
LCS_GDT     K       2     K       2      3    8   24     3    3    3    4    5    6   26   32   36   38   40   43   46   48   50   52   54   58   61   63 
LCS_GDT     F       3     F       3      7    8   24     4    5    7    9   11   18   21   33   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     L       4     L       4      7    8   24     4    6    7    7    7   10   13   16   18   24   39   43   46   48   50   54   57   60   63   66 
LCS_GDT     T       5     T       5      7    8   24     5    6    7   10   12   14   24   25   30   34   37   41   46   48   50   52   56   60   63   66 
LCS_GDT     T       6     T       6      7    8   24     5    6    7   12   17   20   21   23   26   28   35   37   41   46   52   55   57   60   63   66 
LCS_GDT     N       7     N       7      7    8   24     5    6    7    7    9   14   15   19   21   24   30   35   40   46   52   55   57   60   63   66 
LCS_GDT     F       8     F       8      7    8   24     5    6    7    7    7   11   14   25   28   34   36   41   47   48   52   55   57   60   63   66 
LCS_GDT     L       9     L       9      7    8   24     5    6    7   12   17   20   21   23   27   31   35   37   40   43   48   54   57   59   63   66 
LCS_GDT     K      10     K      10      3    9   24     3    3    5    8   11   15   21   23   27   31   35   37   40   43   48   51   56   59   62   66 
LCS_GDT     C      11     C      11      6    9   24     4    4    6    8   17   20   21   23   26   31   32   36   38   43   48   51   56   59   62   66 
LCS_GDT     S      12     S      12      6    9   24     4    4    6   12   17   20   21   23   27   31   35   37   40   43   48   51   56   59   62   66 
LCS_GDT     V      13     V      13      6    9   24     4    4    6    9   16   20   21   23   27   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     K      14     K      14      6    9   24     4    4    6   12   14   18   21   23   27   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     A      15     A      15      6    9   24     3    4    6    7   11   18   21   23   25   26   32   35   37   43   47   51   56   59   62   66 
LCS_GDT     C      16     C      16      6    9   24     3    4    6    7   17   20   21   23   26   28   32   35   37   41   47   51   56   59   62   66 
LCS_GDT     D      17     D      17      4    9   24     3    3    5   12   17   20   21   23   26   28   32   35   37   42   48   54   57   59   62   66 
LCS_GDT     T      18     T      18      4    9   24     3    3    4    6    6   11   14   21   26   28   32   35   37   41   48   49   52   56   60   65 
LCS_GDT     S      19     S      19      4    6   24     3    4    5    8   11   14   16   21   26   28   32   35   37   42   48   49   52   56   62   65 
LCS_GDT     N      20     N      20      4    6   24     3    4    6    8   11   14   16   19   26   28   32   35   37   41   48   49   52   56   62   65 
LCS_GDT     D      21     D      21      4    6   24     3    4    6    7    9   14   15   17   20   24   31   34   37   41   48   49   52   54   60   65 
LCS_GDT     N      22     N      22      4    6   24     3    4    5    6    9   14   16   19   21   25   31   35   40   45   51   55   57   59   63   66 
LCS_GDT     F      23     F      23      6   11   32     0    4    6    9   12   14   17   22   26   28   34   38   47   48   52   55   57   60   63   66 
LCS_GDT     P      24     P      24      6   11   32     3    5    6    9   12   14   16   17   24   29   34   39   47   48   52   55   57   60   63   66 
LCS_GDT     L      25     L      25      6   11   32     4    5    6   10   12   14   16   21   26   28   34   38   47   48   52   55   57   60   63   66 
LCS_GDT     Q      26     Q      26      6   11   32     4    5    6   10   12   14   16   17   21   25   27   33   36   44   51   55   57   60   63   66 
LCS_GDT     Y      27     Y      27      6   11   32     4    5    6   10   12   14   16   17   21   25   31   38   44   47   52   55   57   60   63   66 
LCS_GDT     D      28     D      28      6   11   32     5    5    6   10   12   14   16   16   21   25   27   31   35   42   49   55   57   60   63   66 
LCS_GDT     G      29     G      29      6   11   32     5    5    6   10   12   14   16   17   21   25   27   31   35   40   48   55   57   60   63   66 
LCS_GDT     S      30     S      30      6   11   44     5    5    6   10   12   14   16   17   21   25   27   31   33   34   39   44   48   54   60   65 
LCS_GDT     K      31     K      31      6   11   47     5    5    6   10   12   14   16   17   21   25   27   31   33   34   39   50   57   60   63   66 
LCS_GDT     C      32     C      32      6   11   47     5    5    6   10   12   14   16   17   21   26   34   39   47   48   52   55   57   60   63   66 
LCS_GDT     Q      33     Q      33      3   11   47     3    3    3   10   12   14   16   19   28   31   38   42   47   48   52   55   57   60   63   66 
LCS_GDT     L      34     L      34      3    3   47     3    3    3    4    8    8   12   15   19   25   34   39   47   48   52   55   57   60   63   66 
LCS_GDT     V      35     V      35      3    3   47     0    3    4    4    8   13   23   29   36   38   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     Q      36     Q      36      3   34   47     3    4   21   27   29   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     D      37     D      37      3   34   47     3   12   16   18   18   25   33   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     E      38     E      38      3   34   47     3    4    4    4   29   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     S      39     S      39     21   34   47    12   15   22   29   30   31   33   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     I      40     I      40     21   34   47     6   17   24   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     E      41     E      41     23   34   47     4    7   17   29   30   31   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     F      42     F      42     27   34   47     4    8   20   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     N      43     N      43     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     P      44     P      44     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     E      45     E      45     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   46   48   52   54   56   59   63   64 
LCS_GDT     F      46     F      46     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     L      47     L      47     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     L      48     L      48     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     N      49     N      49     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     I      50     I      50     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     V      51     V      51     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     D      52     D      52     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     R      53     R      53     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     V      54     V      54     27   34   47    12   19   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     D      55     D      55     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     W      56     W      56     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     P      57     P      57     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     A      58     A      58     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     V      59     V      59     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     L      60     L      60     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     T      61     T      61     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     V      62     V      62     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     A      63     A      63     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     A      64     A      64     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     E      65     E      65     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     L      66     L      66     27   34   47    12   24   26   29   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     G      67     G      67     27   34   47    12   24   26   28   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     N      68     N      68     27   34   47     4   16   26   28   30   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     N      69     N      69      6   34   47     4    5    6    8   12   13   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     A      70     A      70      6   33   47     4    5    7   15   27   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     L      71     L      71      6   33   47     4    5    7   16   27   32   35   37   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     P      72     P      72      6   31   47     4    5    6    8   15   23   31   36   39   39   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     P      73     P      73      6   12   47     3    5    6    8   11   13   16   23   26   37   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     T      74     T      74      6   10   47     4    5    6    8   14   19   21   23   27   37   41   43   47   48   52   55   57   60   63   66 
LCS_GDT     K      75     K      75      6   10   47     4    5    5   15   17   19   22   27   28   31   35   42   46   48   52   55   57   60   63   66 
LCS_GDT     P      76     P      76      5   10   47     4    5    5    7    8   12   19   27   28   31   32   35   37   44   50   55   57   60   63   66 
LCS_GDT     S      77     S      77      5   24   47     4    5   12   15   19   23   26   27   28   31   32   35   43   48   50   55   57   60   63   66 
LCS_GDT     F      78     F      78      5   24   47     4    5    6   15   19   23   26   27   28   31   31   32   36   39   49   53   57   60   63   66 
LCS_GDT     P      79     P      79      5   24   45     4    5    6   15   19   23   26   27   28   31   31   32   35   37   39   42   48   57   62   64 
LCS_GDT     S      80     S      80      6   24   39     4    6    6   15   19   23   26   27   28   31   31   32   34   36   38   40   44   48   51   55 
LCS_GDT     S      81     S      81      6   24   39     5    6    8   15   19   23   26   27   28   31   31   32   35   36   39   42   44   49   54   57 
LCS_GDT     I      82     I      82      6   24   39     5    6    6    7   15   21   26   27   28   31   31   32   35   37   39   42   48   54   58   62 
LCS_GDT     Q      83     Q      83      6   24   39     5    6    6    7   15   23   26   27   28   31   31   32   35   37   39   42   48   53   58   61 
LCS_GDT     E      84     E      84      6   24   39     5   12   15   16   19   23   26   27   28   31   31   32   35   39   43   48   51   55   59   62 
LCS_GDT     L      85     L      85      6   24   39     5    6    6   10   17   23   26   27   28   31   31   32   35   40   45   48   53   57   60   66 
LCS_GDT     T      86     T      86     16   24   39     6   15   16   16   19   23   26   27   28   31   31   32   36   40   47   50   56   58   62   66 
LCS_GDT     D      87     D      87     16   24   39    13   15   16   16   19   23   26   27   28   31   31   35   40   42   47   51   56   59   62   64 
LCS_GDT     D      88     D      88     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     D      89     D      89     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     M      90     M      90     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     A      91     A      91     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     I      92     I      92     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     L      93     L      93     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     N      94     N      94     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     D      95     D      95     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     L      96     L      96     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     H      97     H      97     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     T      98     T      98     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   64 
LCS_GDT     L      99     L      99     16   24   39    13   15   16   16   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   64 
LCS_GDT     L     100     L     100     16   24   39     4   15   16   16   19   22   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     L     101     L     101     16   20   39     4   11   16   16   19   20   25   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     Q     102     Q     102      7   20   39     3    6    9   14   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     T     103     T     103      7   20   39     3    5    8   15   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     S     104     S     104      7   20   39     3    5    8   15   19   23   26   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     I     105     I     105      7   20   39     3    6    9   14   16   21   25   27   28   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     A     106     A     106      6   14   39     3    5    9   13   16   17   20   23   27   31   35   37   40   43   47   51   56   59   62   66 
LCS_GDT     E     107     E     107      6   18   39     1    5    9   13   16   17   20   23   27   31   35   37   40   42   47   51   56   59   62   66 
LCS_GDT     G     108     G     108     17   18   39     3   13   16   18   18   19   20   23   27   27   35   37   40   41   47   51   56   59   62   66 
LCS_GDT     E     109     E     109     17   18   39     6   13   16   18   18   19   19   20   22   22   25   29   32   35   39   40   44   47   52   56 
LCS_GDT     M     110     M     110     17   18   39     3   13   16   18   18   19   19   20   22   22   25   27   28   30   32   35   39   45   49   52 
LCS_GDT     K     111     K     111     17   18   37     4   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   36   39   39   41 
LCS_GDT     C     112     C     112     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   39 
LCS_GDT     R     113     R     113     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   39 
LCS_GDT     N     114     N     114     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   39 
LCS_GDT     C     115     C     115     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   39 
LCS_GDT     G     116     G     116     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   39 
LCS_GDT     H     117     H     117     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   39 
LCS_GDT     I     118     I     118     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   39 
LCS_GDT     Y     119     Y     119     17   18   27     6   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   37   41 
LCS_GDT     Y     120     Y     120     17   18   27     5   13   16   18   18   19   19   20   22   22   25   27   28   29   30   32   32   36   38   52 
LCS_GDT     I     121     I     121     17   18   27     4   13   16   18   18   19   19   20   22   22   25   27   28   32   36   41   46   59   61   63 
LCS_GDT     K     122     K     122     17   18   27     5   13   16   18   18   19   19   20   22   22   25   27   28   29   30   33   52   59   61   63 
LCS_GDT     N     123     N     123     17   18   27     3    8   15   18   18   19   19   20   22   22   25   32   35   37   40   41   44   50   54   61 
LCS_GDT     G     124     G     124     17   18   27     3    9   16   18   18   19   19   20   22   26   28   35   37   39   42   48   53   59   62   63 
LCS_GDT     I     125     I     125      4   18   27     3    4    4   11   14   16   17   20   22   26   28   35   37   39   42   48   53   59   62   66 
LCS_GDT     P     126     P     126      4    5   27     3    4    4   11   11   14   17   21   24   26   29   35   40   41   47   51   56   59   62   66 
LCS_GDT     N     127     N     127      3    8   27     3    3    6    7   10   12   14   16   21   25   27   31   34   41   43   48   53   59   62   64 
LCS_GDT     L     128     L     128      6    8   27     4    6    6    7    7   10   14   18   19   25   27   31   33   34   39   39   46   50   55   59 
LCS_GDT     L     129     L     129      6    8   27     4    6    6    7   10   12   17   18   21   25   27   31   33   34   36   39   42   48   51   55 
LCS_GDT     L     130     L     130      6    8   27     4    6    6    7    7   10   17   20   22   25   27   31   33   34   39   40   44   48   51   55 
LCS_GDT     P     131     P     131      6    8   27     4    6    6    7    7    8   11   17   21   25   27   31   33   34   39   39   42   48   51   55 
LCS_GDT     P     132     P     132      6    8   26     3    6    6   10   12   14   16   16   20   25   27   31   33   34   39   39   42   48   51   55 
LCS_GDT     H     133     H     133      6    8   14     3    6    6    7    7    8   10   15   16   22   25   28   33   34   39   40   44   48   51   55 
LCS_GDT     L     134     L     134      6    8   14     2    4    6    7    7    8   10   10   11   12   16   23   27   30   39   39   42   48   51   55 
LCS_GDT     V     135     V     135      3    8   13     0    3    3    5    5    6   16   19   23   26   29   29   29   31   33   33   37   39   39   41 
LCS_AVERAGE  LCS_A:  17.16  (   9.49   14.83   27.16 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     24     26     29     30     32     35     37     39     39     41     43     47     48     52     55     57     60     63     66 
GDT PERCENT_CA   9.63  17.78  19.26  21.48  22.22  23.70  25.93  27.41  28.89  28.89  30.37  31.85  34.81  35.56  38.52  40.74  42.22  44.44  46.67  48.89
GDT RMS_LOCAL    0.26   0.67   0.77   1.16   1.19   1.52   1.96   2.13   2.41   2.41   2.89   3.11   4.49   3.86   4.77   5.47   5.67   5.92   6.07   6.57
GDT RMS_ALL_CA  19.89  19.83  19.88  19.38  19.41  19.75  19.74  19.63  19.62  19.62  19.58  19.71  18.97  19.45  18.95  18.56  18.49  18.46  18.46  18.05

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.603
LGA    K       2      K       2          6.077
LGA    F       3      F       3          4.215
LGA    L       4      L       4          6.034
LGA    T       5      T       5          6.457
LGA    T       6      T       6          7.750
LGA    N       7      N       7          7.958
LGA    F       8      F       8          5.795
LGA    L       9      L       9         10.232
LGA    K      10      K      10         15.645
LGA    C      11      C      11         16.646
LGA    S      12      S      12         18.404
LGA    V      13      V      13         19.967
LGA    K      14      K      14         19.571
LGA    A      15      A      15         19.431
LGA    C      16      C      16         18.265
LGA    D      17      D      17         15.216
LGA    T      18      T      18         19.315
LGA    S      19      S      19         18.537
LGA    N      20      N      20         17.567
LGA    D      21      D      21         15.634
LGA    N      22      N      22         11.459
LGA    F      23      F      23         10.197
LGA    P      24      P      24          9.353
LGA    L      25      L      25         11.100
LGA    Q      26      Q      26         14.683
LGA    Y      27      Y      27         12.270
LGA    D      28      D      28         16.164
LGA    G      29      G      29         15.556
LGA    S      30      S      30         19.931
LGA    K      31      K      31         17.423
LGA    C      32      C      32         10.930
LGA    Q      33      Q      33          9.416
LGA    L      34      L      34         10.912
LGA    V      35      V      35          7.129
LGA    Q      36      Q      36          2.135
LGA    D      37      D      37          3.042
LGA    E      38      E      38          3.319
LGA    S      39      S      39          3.878
LGA    I      40      I      40          2.305
LGA    E      41      E      41          2.730
LGA    F      42      F      42          2.818
LGA    N      43      N      43          1.867
LGA    P      44      P      44          3.035
LGA    E      45      E      45          3.674
LGA    F      46      F      46          2.764
LGA    L      47      L      47          2.274
LGA    L      48      L      48          3.216
LGA    N      49      N      49          3.008
LGA    I      50      I      50          2.043
LGA    V      51      V      51          2.592
LGA    D      52      D      52          2.927
LGA    R      53      R      53          1.972
LGA    V      54      V      54          1.719
LGA    D      55      D      55          1.728
LGA    W      56      W      56          1.950
LGA    P      57      P      57          2.196
LGA    A      58      A      58          1.992
LGA    V      59      V      59          1.894
LGA    L      60      L      60          2.244
LGA    T      61      T      61          2.126
LGA    V      62      V      62          2.049
LGA    A      63      A      63          2.335
LGA    A      64      A      64          2.641
LGA    E      65      E      65          2.374
LGA    L      66      L      66          2.230
LGA    G      67      G      67          2.490
LGA    N      68      N      68          0.708
LGA    N      69      N      69          3.714
LGA    A      70      A      70          3.040
LGA    L      71      L      71          2.467
LGA    P      72      P      72          4.457
LGA    P      73      P      73          6.973
LGA    T      74      T      74          7.572
LGA    K      75      K      75          8.045
LGA    P      76      P      76         11.198
LGA    S      77      S      77         11.505
LGA    F      78      F      78         14.918
LGA    P      79      P      79         19.549
LGA    S      80      S      80         24.308
LGA    S      81      S      81         26.231
LGA    I      82      I      82         24.388
LGA    Q      83      Q      83         28.577
LGA    E      84      E      84         28.955
LGA    L      85      L      85         26.659
LGA    T      86      T      86         26.981
LGA    D      87      D      87         28.043
LGA    D      88      D      88         22.844
LGA    D      89      D      89         19.094
LGA    M      90      M      90         21.956
LGA    A      91      A      91         21.802
LGA    I      92      I      92         15.627
LGA    L      93      L      93         15.209
LGA    N      94      N      94         19.755
LGA    D      95      D      95         18.164
LGA    L      96      L      96         12.910
LGA    H      97      H      97         15.605
LGA    T      98      T      98         20.413
LGA    L      99      L      99         17.698
LGA    L     100      L     100         14.182
LGA    L     101      L     101         17.409
LGA    Q     102      Q     102         20.578
LGA    T     103      T     103         19.920
LGA    S     104      S     104         23.097
LGA    I     105      I     105         23.839
LGA    A     106      A     106         26.950
LGA    E     107      E     107         28.061
LGA    G     108      G     108         27.310
LGA    E     109      E     109         32.438
LGA    M     110      M     110         31.889
LGA    K     111      K     111         37.560
LGA    C     112      C     112         38.046
LGA    R     113      R     113         41.122
LGA    N     114      N     114         43.446
LGA    C     115      C     115         45.815
LGA    G     116      G     116         46.024
LGA    H     117      H     117         43.451
LGA    I     118      I     118         41.001
LGA    Y     119      Y     119         35.560
LGA    Y     120      Y     120         33.335
LGA    I     121      I     121         27.242
LGA    K     122      K     122         27.700
LGA    N     123      N     123         22.993
LGA    G     124      G     124         18.581
LGA    I     125      I     125         22.766
LGA    P     126      P     126         22.009
LGA    N     127      N     127         23.637
LGA    L     128      L     128         25.614
LGA    L     129      L     129         24.433
LGA    L     130      L     130         23.651
LGA    P     131      P     131         24.790
LGA    P     132      P     132         25.512
LGA    H     133      H     133         25.953
LGA    L     134      L     134         24.271
LGA    V     135      V     135         25.613

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     37    2.13    26.852    23.584     1.659

LGA_LOCAL      RMSD =  2.131  Number of atoms =   37  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.279  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 14.825  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.199311 * X  +   0.622165 * Y  +   0.757090 * Z  +  25.231274
  Y_new =   0.761827 * X  +  -0.584319 * Y  +   0.279626 * Z  +  -6.017857
  Z_new =   0.616356 * X  +   0.521040 * Y  +  -0.590443 * Z  +  11.883726 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.418556   -0.723037  [ DEG:   138.5730    -41.4270 ]
  Theta =  -0.664106   -2.477486  [ DEG:   -38.0505   -141.9495 ]
  Phi   =   1.314910   -1.826683  [ DEG:    75.3388   -104.6612 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_4                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_4.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   37   2.13  23.584    14.82
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_4
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      19.270   5.668  14.577  1.00  0.00              
ATOM      2  CA  LYS     2      20.780   5.520  11.042  1.00  0.00              
ATOM      3  CA  PHE     3      24.329   4.957  11.173  1.00  0.00              
ATOM      4  CA  LEU     4      20.427   4.156  11.380  1.00  0.00              
ATOM      5  CA  THR     5      20.831   0.405  10.884  1.00  0.00              
ATOM      6  CA  THR     6      23.709   0.040  13.387  1.00  0.00              
ATOM      7  CA  ASN     7      21.778   1.912  16.000  1.00  0.00              
ATOM      8  CA  PHE     8      18.697  -0.261  15.443  1.00  0.00              
ATOM      9  CA  LEU     9      20.703  -3.479  15.887  1.00  0.00              
ATOM     10  CA  LYS    10      22.136  -2.231  19.211  1.00  0.00              
ATOM     11  CA  CYS    11      19.095  -0.649  20.820  1.00  0.00              
ATOM     12  CA  SER    12      19.544   1.461  23.906  1.00  0.00              
ATOM     13  CA  VAL    13      17.160   4.432  23.494  1.00  0.00              
ATOM     14  CA  LYS    14      13.932   4.324  25.453  1.00  0.00              
ATOM     15  CA  ALA    15      11.326   2.471  23.487  1.00  0.00              
ATOM     16  CA  CYS    16      13.162  -0.562  22.264  1.00  0.00              
ATOM     17  CA  ASP    17      11.577  -3.922  22.758  1.00  0.00              
ATOM     18  CA  THR    18      13.863  -6.867  22.225  1.00  0.00              
ATOM     19  CA  SER    19      11.778  -9.905  21.124  1.00  0.00              
ATOM     20  CA  ASN    20      14.238 -11.712  18.942  1.00  0.00              
ATOM     21  CA  ASP    21      13.470 -10.656  15.355  1.00  0.00              
ATOM     22  CA  ASN    22      11.182  -7.740  15.906  1.00  0.00              
ATOM     23  CA  PHE    23      12.592  -4.862  17.842  1.00  0.00              
ATOM     24  CA  PRO    24      11.399  -1.319  17.617  1.00  0.00              
ATOM     25  CA  LEU    25      14.075   1.156  18.491  1.00  0.00              
ATOM     26  CA  GLN    26      13.937   4.599  19.636  1.00  0.00              
ATOM     27  CA  TYR    27      16.607   7.083  18.389  1.00  0.00              
ATOM     28  CA  ASP    28      16.582  10.210  20.522  1.00  0.00              
ATOM     29  CA  GLY    29      18.532  13.202  19.297  1.00  0.00              
ATOM     30  CA  SER    30      20.744  13.410  22.403  1.00  0.00              
ATOM     31  CA  LYS    31      21.434   9.650  22.103  1.00  0.00              
ATOM     32  CA  CYS    32      22.318   9.714  18.442  1.00  0.00              
ATOM     33  CA  GLN    33      24.753  12.597  18.944  1.00  0.00              
ATOM     34  CA  LEU    34      26.325  10.698  21.869  1.00  0.00              
ATOM     35  CA  VAL    35      26.732   7.495  19.854  1.00  0.00              
ATOM     36  CA  GLN    36      28.445   9.185  16.883  1.00  0.00              
ATOM     37  CA  ASP    37      30.932  10.975  19.159  1.00  0.00              
ATOM     38  CA  GLU    38      31.816   8.077  21.367  1.00  0.00              
ATOM     39  CA  SER    39      32.668   5.343  18.940  1.00  0.00              
ATOM     40  CA  ILE    40      30.750   2.334  20.130  1.00  0.00              
ATOM     41  CA  GLU    41      33.416  -0.449  20.322  1.00  0.00              
ATOM     42  CA  PHE    42      31.630  -3.694  19.723  1.00  0.00              
ATOM     43  CA  ASN    43      31.432  -5.932  22.813  1.00  0.00              
ATOM     44  CA  PRO    44      31.083  -9.508  21.632  1.00  0.00              
ATOM     45  CA  GLU    45      28.419 -10.413  24.112  1.00  0.00              
ATOM     46  CA  PHE    46      26.016  -7.641  23.275  1.00  0.00              
ATOM     47  CA  LEU    47      26.686  -8.024  19.631  1.00  0.00              
ATOM     48  CA  LEU    48      26.161 -11.777  19.738  1.00  0.00              
ATOM     49  CA  ASN    49      22.706 -11.329  21.293  1.00  0.00              
ATOM     50  CA  ILE    50      21.852  -8.787  18.573  1.00  0.00              
ATOM     51  CA  VAL    51      23.138 -11.038  15.782  1.00  0.00              
ATOM     52  CA  ASP    52      21.010 -13.990  16.871  1.00  0.00              
ATOM     53  CA  ARG    53      17.881 -11.767  16.443  1.00  0.00              
ATOM     54  CA  VAL    54      18.882 -10.022  13.244  1.00  0.00              
ATOM     55  CA  ASP    55      16.516 -10.289  10.363  1.00  0.00              
ATOM     56  CA  TRP    56      18.823 -10.187   7.390  1.00  0.00              
ATOM     57  CA  PRO    57      16.103  -8.991   4.968  1.00  0.00              
ATOM     58  CA  ALA    58      15.340  -6.018   7.212  1.00  0.00              
ATOM     59  CA  VAL    59      18.981  -5.142   7.484  1.00  0.00              
ATOM     60  CA  LEU    60      19.563  -5.312   3.723  1.00  0.00              
ATOM     61  CA  THR    61      16.545  -3.043   3.137  1.00  0.00              
ATOM     62  CA  VAL    62      17.790  -0.574   5.723  1.00  0.00              
ATOM     63  CA  ALA    63      21.268  -0.460   4.132  1.00  0.00              
ATOM     64  CA  ALA    64      19.819   0.294   0.693  1.00  0.00              
ATOM     65  CA  GLU    65      17.631   3.056   2.058  1.00  0.00              
ATOM     66  CA  LEU    66      20.444   4.784   3.921  1.00  0.00              
ATOM     67  CA  GLY    67      22.704   4.687   0.807  1.00  0.00              
ATOM     68  CA  ASN    68      25.495   2.721   2.413  1.00  0.00              
ATOM     69  CA  ASN    69      28.501   3.637   0.367  1.00  0.00              
ATOM     70  CA  ALA    70      30.830   0.996   1.869  1.00  0.00              
ATOM     71  CA  LEU    71      28.476  -1.977   1.676  1.00  0.00              
ATOM     72  CA  PRO    72      28.617  -4.287  -1.302  1.00  0.00              
ATOM     73  CA  PRO    73      25.927  -3.637  -3.937  1.00  0.00              
ATOM     74  CA  THR    74      23.763  -6.608  -2.943  1.00  0.00              
ATOM     75  CA  LYS    75      26.118  -9.039  -1.169  1.00  0.00              
ATOM     76  CA  PRO    76      26.848 -11.592  -3.867  1.00  0.00              
ATOM     77  CA  SER    77      26.122 -14.969  -2.390  1.00  0.00              
ATOM     78  CA  PHE    78      22.850 -14.025  -0.712  1.00  0.00              
ATOM     79  CA  PRO    79      19.902 -16.286  -1.278  1.00  0.00              
ATOM     80  CA  SER    80      16.909 -14.129  -1.894  1.00  0.00              
ATOM     81  CA  SER    81      15.030 -14.679   1.320  1.00  0.00              
ATOM     82  CA  ILE    82      17.367 -16.893   3.385  1.00  0.00              
ATOM     83  CA  GLN    83      14.277 -18.483   4.857  1.00  0.00              
ATOM     84  CA  GLU    84      12.841 -19.553   1.454  1.00  0.00              
ATOM     85  CA  LEU    85      15.585 -21.904   0.424  1.00  0.00              
ATOM     86  CA  THR    86      15.591 -23.467   3.844  1.00  0.00              
ATOM     87  CA  ASP    87      18.503 -25.724   4.029  1.00  0.00              
ATOM     88  CA  ASP    88      20.990 -23.598   2.208  1.00  0.00              
ATOM     89  CA  ASP    89      20.236 -20.339   4.101  1.00  0.00              
ATOM     90  CA  MET    90      20.553 -22.182   7.392  1.00  0.00              
ATOM     91  CA  ALA    91      24.117 -23.246   6.576  1.00  0.00              
ATOM     92  CA  ILE    92      25.222 -19.708   5.659  1.00  0.00              
ATOM     93  CA  LEU    93      23.672 -18.417   8.861  1.00  0.00              
ATOM     94  CA  ASN    94      25.435 -21.025  11.038  1.00  0.00              
ATOM     95  CA  ASP    95      28.811 -20.072   9.564  1.00  0.00              
ATOM     96  CA  LEU    96      28.000 -16.430  10.266  1.00  0.00              
ATOM     97  CA  HIS    97      27.004 -17.249  13.863  1.00  0.00              
ATOM     98  CA  THR    98      30.280 -19.096  14.426  1.00  0.00              
ATOM     99  CA  LEU    99      32.262 -16.121  12.993  1.00  0.00              
ATOM    100  CA  LEU   100      30.399 -13.663  15.213  1.00  0.00              
ATOM    101  CA  LEU   101      31.153 -15.760  18.315  1.00  0.00              
ATOM    102  CA  GLN   102      34.863 -15.595  17.505  1.00  0.00              
ATOM    103  CA  THR   103      35.402 -12.063  16.365  1.00  0.00              
ATOM    104  CA  SER   104      38.428  -9.979  17.344  1.00  0.00              
ATOM    105  CA  ILE   105      38.245  -6.342  16.503  1.00  0.00              
ATOM    106  CA  ALA   106      41.426  -4.413  15.951  1.00  0.00              
ATOM    107  CA  GLU   107      41.397  -0.880  14.590  1.00  0.00              
ATOM    108  CA  GLY   108      38.779  -1.367  11.831  1.00  0.00              
ATOM    109  CA  GLU   109      40.149  -4.853  11.071  1.00  0.00              
ATOM    110  CA  MET   110      38.115  -7.888  12.065  1.00  0.00              
ATOM    111  CA  LYS   111      40.035 -11.082  12.739  1.00  0.00              
ATOM    112  CA  CYS   112      38.248 -14.372  13.222  1.00  0.00              
ATOM    113  CA  ARG   113      39.972 -16.553  15.864  1.00  0.00              
ATOM    114  CA  ASN   114      38.619 -19.847  14.667  1.00  0.00              
ATOM    115  CA  CYS   115      38.783 -19.718  10.924  1.00  0.00              
ATOM    116  CA  GLY   116      41.350 -17.033  10.336  1.00  0.00              
ATOM    117  CA  HIS   117      39.254 -15.030   7.941  1.00  0.00              
ATOM    118  CA  ILE   118      40.109 -11.421   7.739  1.00  0.00              
ATOM    119  CA  TYR   119      37.343  -8.904   7.322  1.00  0.00              
ATOM    120  CA  TYR   120      38.051  -5.294   6.565  1.00  0.00              
ATOM    121  CA  ILE   121      35.525  -2.749   7.667  1.00  0.00              
ATOM    122  CA  LYS   122      35.961   0.770   6.431  1.00  0.00              
ATOM    123  CA  ASN   123      32.581   2.535   6.734  1.00  0.00              
ATOM    124  CA  GLY   124      31.250   1.058   9.922  1.00  0.00              
ATOM    125  CA  ILE   125      34.242   0.994  12.220  1.00  0.00              
ATOM    126  CA  PRO   126      33.290   2.658  15.474  1.00  0.00              
ATOM    127  CA  ASN   127      30.121   0.545  15.341  1.00  0.00              
ATOM    128  CA  LEU   128      31.182  -2.984  14.417  1.00  0.00              
ATOM    129  CA  LEU   129      28.805  -3.863  11.553  1.00  0.00              
ATOM    130  CA  LEU   130      29.460  -7.288  10.053  1.00  0.00              
ATOM    131  CA  PRO   131      28.643  -8.174   6.500  1.00  0.00              
ATOM    132  CA  PRO   132      26.608 -11.433   6.692  1.00  0.00              
ATOM    133  CA  HIS   133      29.898 -13.414   4.991  1.00  0.00              
ATOM    134  CA  LEU   134      32.526 -10.324   3.888  1.00  0.00              
ATOM    135  CA  VAL   135      34.407  -6.650   3.581  1.00  0.00              
TER                                                                             
END
