
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS393_3-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS393_3-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41       167 - 207         4.96    21.07
  LCS_AVERAGE:     18.65

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       179 - 191         1.98    26.32
  LONGEST_CONTINUOUS_SEGMENT:    13       180 - 192         1.99    26.76
  LONGEST_CONTINUOUS_SEGMENT:    13       222 - 234         1.44    27.04
  LCS_AVERAGE:      5.98

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11       224 - 234         0.54    32.07
  LCS_AVERAGE:      3.79

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      3    5    6     3    3    3    4    4    5    5    5    6    6   13   17   19   21   25   29   31   32   34   36 
LCS_GDT     I      98     I      98      3    5   14     3    3    4    4    5    8    9    9   10   11   11   11   15   19   21   22   35   41   45   48 
LCS_GDT     F      99     F      99      3    5   14     3    3    4    4    4    5    5    5    9   11   18   22   26   31   36   40   45   48   53   57 
LCS_GDT     S     100     S     100      3    5   14     3    3    4    4    6    7    9   12   12   12   17   21   26   31   35   39   41   47   50   53 
LCS_GDT     D     101     D     101      3    5   14     3    3    4    4    4    5   10   12   12   12   12   12   13   15   16   16   32   38   43   48 
LCS_GDT     A     102     A     102      3    7   14     3    3    3    3    7    9   10   12   12   12   12   12   16   22   24   26   29   32   43   50 
LCS_GDT     N     110     N     110      6    8   24     5    5    7    7    9   11   16   18   19   21   27   30   33   37   41   44   50   52   56   57 
LCS_GDT     D     111     D     111      6    8   24     5    5    5    6   10   13   16   19   19   21   28   30   33   37   41   44   50   52   56   57 
LCS_GDT     P     112     P     112      6    8   24     5    5    5    6    7   10   13   18   18   19   22   26   32   37   41   44   50   52   56   57 
LCS_GDT     F     113     F     113      6    8   24     5    5    5    6    7   10   12   13   14   17   20   23   28   32   39   43   50   52   56   57 
LCS_GDT     I     114     I     114      6    8   24     5    5    5    6    8   10   13   18   18   21   25   29   33   37   41   44   50   52   56   57 
LCS_GDT     M     115     M     115      6    8   24     3    4    5    6    7   10   13   18   18   19   23   26   32   37   39   44   50   52   56   57 
LCS_GDT     S     116     S     116      3    8   24     3    3    4    5    7   10   13   18   18   19   21   25   28   33   35   41   50   52   55   56 
LCS_GDT     Q     117     Q     117      3    8   24     2    3    4    4    6    9   10   18   18   18   21   23   28   30   33   41   43   50   55   56 
LCS_GDT     N     118     N     118      3    5   24     1    3    3    5    7   10   12   18   18   19   23   26   29   36   39   44   50   52   56   57 
LCS_GDT     E     119     E     119      3    6   24     0    3    3    5    8   10   12   14   15   19   22   26   28   33   39   44   50   52   55   56 
LCS_GDT     V     120     V     120      3    6   24     3    3    3    4    6   10   12   14   15   17   22   25   28   33   35   43   50   52   55   56 
LCS_GDT     K     121     K     121      3    7   24     3    3    3    6    7   10   11   14   15   17   22   25   28   33   38   44   50   52   56   57 
LCS_GDT     G     122     G     122      4    7   24     3    4    5    7    8   10   12   14   15   16   21   24   28   32   36   43   50   52   56   57 
LCS_GDT     K     123     K     123      4    7   24     3    4    5    7    8   10   12   14   15   16   21   25   28   33   39   44   50   52   56   57 
LCS_GDT     K     124     K     124      4    7   24     3    4    5    7    8   10   12   14   15   16   19   23   27   32   36   44   50   52   56   57 
LCS_GDT     V     125     V     125      4    7   26     3    4    5    7    8   10   12   14   15   20   24   29   37   46   50   55   59   63   65   67 
LCS_GDT     G     126     G     126      4    7   26     3    3    5    7    8   10   12   14   17   25   32   41   45   49   53   55   59   63   65   67 
LCS_GDT     V     127     V     127      4    7   26     3    4    5    5   11   15   19   22   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     V     128     V     128      4    7   26     3    4    5    7    8   10   13   18   18   19   22   26   35   38   42   50   54   56   59   62 
LCS_GDT     G     129     G     129      5    7   26     4    4    5    6    7   10   13   18   18   19   22   26   29   33   41   44   50   52   55   58 
LCS_GDT     H     130     H     130      5    7   26     4    4    5    6    7   10   14   18   23   28   35   43   46   49   51   55   56   58   59   62 
LCS_GDT     F     131     F     131      5    7   26     4    4    5    6    7   10   15   19   19   21   30   43   46   49   53   55   56   58   59   62 
LCS_GDT     P     132     P     132      5    7   26     4    4    5    8    8   10   16   19   24   30   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     H     133     H     133      5    7   26     3    5    7    9   10   13   16   19   22   29   33   38   43   48   53   55   59   63   65   67 
LCS_GDT     L     134     L     134      5    7   26     3    5    5    6   11   11   16   19   23   29   31   37   42   46   50   55   59   63   65   67 
LCS_GDT     E     135     E     135      5    6   26     3    5    5    6    8    8    9   14   16   23   25   36   42   46   50   55   59   63   65   67 
LCS_GDT     S     136     S     136      5    6   26     3    5    5    9   11   11   16   19   23   29   31   37   42   46   50   55   59   63   65   67 
LCS_GDT     L     137     L     137      5    6   26     3    5    5    6    8   12   16   19   23   29   31   37   42   46   50   55   59   63   65   67 
LCS_GDT     L     138     L     138      3    6   26     3    3    4    5    8   10   13   18   18   21   25   29   39   45   50   55   59   63   65   67 
LCS_GDT     E     139     E     139      3    5   26     3    3    3    5    5   10   13   18   18   28   30   35   42   46   50   55   59   63   65   67 
LCS_GDT     P     140     P     140      4   10   26     3    4    6    7    9   13   14   16   18   21   30   34   39   45   50   55   59   63   65   67 
LCS_GDT     I     141     I     141      4   10   26     3    3    4    6    9   13   16   19   19   21   28   30   33   37   41   44   50   52   57   60 
LCS_GDT     C     142     C     142      4   10   26     3    3    4    7    9   13   16   19   19   21   28   30   33   39   42   50   55   57   63   67 
LCS_GDT     D     143     D     143      4   10   26     3    3    4    6    8   12   14   18   19   21   28   30   33   39   49   52   57   63   65   67 
LCS_GDT     L     144     L     144      5   10   26     3    4    6    7    9   10   13   16   19   21   28   30   37   42   49   55   59   63   65   67 
LCS_GDT     S     145     S     145      5   10   26     3    4    6    7    9   10   13   16   19   21   28   30   33   37   43   48   53   60   65   67 
LCS_GDT     I     146     I     146      5   10   26     3    3    6    7    9   10   13   16   19   21   28   30   33   38   44   49   53   59   65   67 
LCS_GDT     L     147     L     147      5   10   26     3    4    6    7    9   10   13   15   19   21   28   31   36   40   42   44   50   52   56   58 
LCS_GDT     E     148     E     148      5   10   26     3    4    6    7   10   12   13   16   20   25   29   32   36   40   42   44   50   52   56   57 
LCS_GDT     W     149     W     149      4   10   26     3    3    6    7    9   13   14   17   20   25   29   32   36   40   42   44   50   52   56   57 
LCS_GDT     S     150     S     150      4    8   26     3    5    8   11   11   13   14   17   20   25   26   31   36   40   42   44   50   52   56   57 
LCS_GDT     P     151     P     151      4    4   22     3    3    4    7    9   12   14   17   20   25   29   32   36   40   42   43   47   52   56   57 
LCS_GDT     E     152     E     152      4    4   21     3    3    4    7    9   12   14   17   20   25   29   32   36   40   42   43   47   49   53   55 
LCS_GDT     E     153     E     153      3    5   21     3    3    4    6    9   12   14   17   20   25   29   32   36   40   42   43   47   49   53   55 
LCS_GDT     G     154     G     154      3    5   21     3    3    4    5    6    8   10   12   15   21   29   32   36   40   42   43   47   49   53   55 
LCS_GDT     D     155     D     155      3    9   21     0    3    4    5    7    9   11   14   16   22   27   31   36   40   42   44   47   49   56   57 
LCS_GDT     Y     156     Y     156      6   12   21     3    5    7   10   11   12   13   15   18   22   29   32   36   40   42   44   50   52   56   57 
LCS_GDT     P     157     P     157      6   12   22     3    5    7   10   11   12   15   19   19   25   29   32   36   40   42   44   50   52   56   57 
LCS_GDT     L     158     L     158      6   12   22     4    5    7   10   11   12   16   19   19   21   28   30   33   37   41   44   50   52   56   57 
LCS_GDT     P     159     P     159      6   12   22     4    5    7   10   11   13   16   19   19   21   28   30   33   37   41   44   50   52   56   57 
LCS_GDT     A     160     A     160      6   12   22     5    5    7   10   11   13   16   19   19   25   29   32   36   40   42   44   50   52   56   57 
LCS_GDT     S     161     S     161      6   12   22     5    5    7   10   11   13   16   19   19   21   29   32   36   40   42   44   50   52   56   57 
LCS_GDT     E     162     E     162      6   12   22     5    5    7   10   11   13   16   19   19   21   28   30   33   37   41   44   47   52   56   57 
LCS_GDT     F     163     F     163      6   12   22     5    5    7   10   11   13   16   19   19   21   28   30   33   37   42   44   49   52   56   57 
LCS_GDT     I     164     I     164      6   12   22     5    5    7   10   11   13   16   19   20   25   29   32   36   40   42   44   50   52   56   57 
LCS_GDT     L     165     L     165      6   12   22     3    4    5    8   11   12   15   19   19   25   29   32   36   40   42   45   48   52   56   61 
LCS_GDT     P     166     P     166      4   12   40     3    3    7   10   11   13   16   19   21   25   29   33   39   43   47   53   56   59   61   63 
LCS_GDT     E     167     E     167      4   12   41     3    3    5    9   11   13   16   19   25   32   37   43   46   49   53   55   59   63   64   67 
LCS_GDT     C     168     C     168      4    7   41     3    3    6    7    9   13   16   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     D     169     D     169      4    7   41     3    3    5    6    8   11   14   17   20   29   31   37   42   46   50   55   59   63   65   67 
LCS_GDT     Y     170     Y     170      4    7   41     3    3    5    6    9   13   14   17   23   29   31   37   43   49   53   55   59   63   65   67 
LCS_GDT     V     171     V     171      5    7   41     3    4    5    6    8   13   14   17   19   29   33   41   45   49   53   55   59   63   65   67 
LCS_GDT     Y     172     Y     172      5    7   41     3    4    5    6    8   10   12   15   19   23   30   36   42   47   51   55   59   63   65   67 
LCS_GDT     I     173     I     173      5    6   41     3    4    5    6    9   10   16   23   25   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     T     174     T     174      5    6   41     3    4    5    6    8   12   16   23   25   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     C     175     C     175      7    7   41     4    6    8    8    8   12   16   19   23   29   36   42   46   49   53   55   59   63   65   67 
LCS_GDT     A     176     A     176      7    7   41     6    6    8    8    8   12   16   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     S     177     S     177      7    7   41     6    6    8    8    8    9   13   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     V     178     V     178      7    7   41     6    6    8    8    8   12   15   20   25   31   37   43   46   49   53   55   56   63   65   67 
LCS_GDT     V     179     V     179      7   13   41     6    6    8    8   10   14   18   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     D     180     D     180      7   13   41     6    6    8    8    8   13   17   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     K     181     K     181     10   13   41     6    6   10   11   11   14   18   23   26   33   37   43   46   49   53   55   56   58   59   63 
LCS_GDT     T     182     T     182     10   13   41     4    9   10   11   11   13   18   23   25   30   36   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     183     L     183     10   13   41     8    9   10   11   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     P     184     P     184     10   13   41     8    9   10   11   11   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     R     185     R     185     10   13   41     8    9   10   11   11   13   18   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     186     L     186     10   13   41     8    9   10   11   11   13   18   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     187     L     187     10   13   41     8    9   10   11   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     E     188     E     188     10   13   41     8    9   10   11   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     189     L     189     10   13   41     8    9   10   11   11   13   18   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     S     190     S     190     10   13   41     8    9   10   11   11   13   16   21   26   32   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     R     191     R     191      3   13   41     3    3    6   10   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     N     192     N     192      5   13   41     3    5    6    9   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     A     193     A     193      6   10   41     3    5    6    8   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     R     194     R     194      6   10   41     3    5    7    8    9   13   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     R     195     R     195      6   10   41     3    5    7    8    9   13   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     I     196     I     196      6   10   41     3    5    6    8   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     T     197     T     197      6   10   41     3    5    7    8   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     198     L     198      6   10   41     3    5    7    8   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     V     199     V     199      6   10   41     3    5    7    8    9   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     G     200     G     200      5   10   41     3    5    7    8    9   13   17   23   26   33   37   39   45   49   53   55   59   63   65   67 
LCS_GDT     P     201     P     201      5   10   41     3    5    7    8    9   13   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     G     202     G     202      3   10   41     3    3    8    8    8   11   17   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     T     203     T     203      3    5   41     3    3    3    6    7    8   14   16   23   29   34   41   45   49   53   55   59   63   65   67 
LCS_GDT     P     204     P     204      4    5   41     3    4    4    7    9   12   16   19   25   32   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     205     L     205      4    8   41     3    4    4    5    8   13   17   22   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     A     206     A     206      7    8   41     3    4    7    8   11   12   16   19   23   30   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     P     207     P     207      7    8   41     3    4    7    9   11   13   16   19   23   29   35   43   46   49   53   55   59   63   65   67 
LCS_GDT     V     208     V     208      7    8   40     3    5    7    9   11   13   16   19   23   30   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     209     L     209      7    8   40     4    5    7    9   11   13   16   19   23   30   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     F     210     F     210      7    8   39     4    5    7    9   11   13   16   19   23   29   31   36   42   47   53   55   59   63   65   67 
LCS_GDT     E     211     E     211      7    8   23     4    5    7    9   11   13   16   19   23   29   30   36   42   46   50   55   59   63   65   67 
LCS_GDT     H     212     H     212      7    8   23     4    5    7    9   11   13   16   19   23   29   31   37   42   47   53   55   59   63   65   67 
LCS_GDT     G     213     G     213      4    8   23     3    4    4    4    7   13   15   18   23   29   34   43   46   49   53   55   59   63   65   67 
LCS_GDT     L     214     L     214      4    5   23     3    4    4    4    7   13   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     Q     215     Q     215      4    5   23     3    5    5    8   12   15   19   23   26   33   37   43   46   49   53   55   59   63   65   67 
LCS_GDT     E     216     E     216      4   10   20     3    3    7    9   12   15   19   23   26   33   37   41   46   49   53   55   58   63   65   67 
LCS_GDT     L     217     L     217      5   10   20     0    4    8    9   12   15   19   23   26   33   37   41   46   49   53   55   59   63   65   67 
LCS_GDT     S     218     S     218      6   10   21     3    5    8    9    9   12   13   14   16   16   17   19   30   36   39   43   49   52   57   62 
LCS_GDT     G     219     G     219      6   10   21     4    5    8    9    9   12   13   14   16   16   17   19   30   33   39   43   47   52   56   62 
LCS_GDT     F     220     F     220      6   10   21     4    5    8    9    9   12   13   14   16   16   17   19   21   24   33   39   46   51   56   62 
LCS_GDT     M     221     M     221      6   10   21     4    4    8    9    9   12   13   14   16   16   17   19   20   23   29   41   46   51   56   62 
LCS_GDT     V     222     V     222      6   13   21     4    5    8   11   13   13   13   14   16   16   17   19   21   28   33   41   49   55   56   62 
LCS_GDT     K     223     K     223      6   13   21     3    5    9   11   13   13   13   14   16   16   17   18   20   23   30   41   46   51   56   62 
LCS_GDT     D     224     D     224     11   13   21     3    6   11   11   13   13   13   14   16   16   17   18   20   22   27   37   46   51   56   60 
LCS_GDT     N     225     N     225     11   13   21    10   10   11   11   13   13   13   14   16   16   17   18   20   24   30   41   46   51   56   62 
LCS_GDT     A     226     A     226     11   13   21    10   10   11   11   13   13   13   14   16   16   17   18   20   23   26   29   33   40   46   55 
LCS_GDT     R     227     R     227     11   13   21    10   10   11   11   13   13   13   14   16   16   17   18   20   22   25   28   31   34   41   51 
LCS_GDT     A     228     A     228     11   13   21    10   10   11   11   13   13   13   14   16   16   17   18   20   22   27   37   42   50   56   60 
LCS_GDT     F     229     F     229     11   13   21    10   10   11   11   13   13   13   14   16   16   17   18   20   22   32   38   42   49   55   60 
LCS_GDT     R     230     R     230     11   13   21    10   10   11   11   13   13   13   14   16   16   17   18   20   22   23   26   30   35   40   46 
LCS_GDT     I     231     I     231     11   13   21    10   10   11   11   13   13   13   14   15   16   17   18   20   22   23   27   32   38   40   44 
LCS_GDT     V     232     V     232     11   13   21    10   10   11   11   13   13   13   14   16   16   17   21   22   25   29   33   36   43   47   53 
LCS_GDT     A     233     A     233     11   13   21    10   10   11   11   13   13   13   14   16   16   17   18   20   22   25   31   35   39   46   48 
LCS_GDT     G     234     G     234     11   13   21    10   10   11   11   13   13   13   13   15   15   17   18   20   22   23   26   27   29   40   43 
LCS_GDT     A     235     A     235      4   12   21     3    4    4    4    5    5    7   11   13   13   14   16   18   18   23   30   33   38   40   43 
LCS_GDT     E     236     E     236      4    5   21     3    4    4    4    5    5    6    8    9   12   17   21   22   24   29   33   35   38   40   44 
LCS_GDT     K     237     K     237      4    5   21     3    4    4    4    6    9   12   13   15   15   17   18   20   22   25   33   35   38   40   44 
LCS_GDT     V     238     V     238      3    4   21     3    3    3    4    4    7   11   13   14   15   17   21   22   25   29   33   35   38   40   44 
LCS_GDT     K     239     K     239      3    4   21     3    3    3    4    7    9   10   12   13   13   15   20   22   25   29   33   35   38   40   44 
LCS_GDT     I     240     I     240      3    4   16     3    3    3    4    4    7   10   12   13   13   13   15   19   24   27   31   35   37   40   44 
LCS_GDT     Y     241     Y     241      3    4   16     3    3    3    4    4    5    6    7    8   10   14   19   20   23   25   31   35   37   40   42 
LCS_GDT     S     242     S     242      3    4   16     0    3    3    4    7    9   10   12   13   13   17   21   22   25   29   33   35   38   40   44 
LCS_GDT     A     243     A     243      5    8   16     3    5    6    6    7    9   10   12   13   13   17   21   22   25   29   33   35   38   40   44 
LCS_GDT     G     244     G     244      5    8   16     4    5    6    6    7    9   10   12   13   13   17   21   22   25   29   33   35   38   40   44 
LCS_GDT     Q     245     Q     245      5    8   16     4    5    6    6    7    9   10   12   13   13   17   21   22   25   29   33   35   38   40   44 
LCS_GDT     K     246     K     246      5    8   16     4    5    6    6    7    9   10   12   13   17   18   21   23   29   32   34   36   38   45   48 
LCS_GDT     V     247     V     247      5    8   16     4    5    6    6    8   10   12   13   16   19   21   24   27   30   32   40   41   44   48   52 
LCS_GDT     T     248     T     248      5    8   16     4    5    5    6    7    9   10   12   13   13   20   22   25   28   32   34   38   38   40   46 
LCS_GDT     I     249     I     249      5    8   16     4    5    6    6    7    9   10   12   13   13   13   20   22   26   28   31   33   37   40   44 
LCS_GDT     K     250     K     250      5    8   16     3    5    5    6    7    9   10   12   13   13   13   20   20   22   23   31   31   32   35   38 
LCS_GDT     K     251     K     251      3    6   16     3    3    3    3    5    6   10   12   13   13   13   20   20   22   23   23   27   29   35   37 
LCS_AVERAGE  LCS_A:   9.47  (   3.79    5.98   18.65 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     10     11     11     13     15     19     23     26     33     37     43     46     49     53     55     59     63     65     67 
GDT PERCENT_CA   6.76   6.76   7.43   7.43   8.78  10.14  12.84  15.54  17.57  22.30  25.00  29.05  31.08  33.11  35.81  37.16  39.86  42.57  43.92  45.27
GDT RMS_LOCAL    0.25   0.25   0.54   0.54   1.44   2.17   2.57   2.93   3.16   3.76   4.05   4.66   4.77   4.93   5.25   5.37   5.82   6.04   6.24   6.36
GDT RMS_ALL_CA  31.20  31.20  32.07  32.07  27.04  21.23  21.08  22.07  21.05  21.10  21.31  21.19  21.17  21.07  20.65  20.75  19.66  19.71  19.78  19.75

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         40.634
LGA    I      98      I      98         36.398
LGA    F      99      F      99         32.016
LGA    S     100      S     100         35.930
LGA    D     101      D     101         37.114
LGA    A     102      A     102         33.554
LGA    N     110      N     110         34.838
LGA    D     111      D     111         29.839
LGA    P     112      P     112         30.955
LGA    F     113      F     113         27.293
LGA    I     114      I     114         31.148
LGA    M     115      M     115         36.883
LGA    S     116      S     116         36.399
LGA    Q     117      Q     117         37.521
LGA    N     118      N     118         39.395
LGA    E     119      E     119         36.461
LGA    V     120      V     120         33.003
LGA    K     121      K     121         35.538
LGA    G     122      G     122         31.408
LGA    K     123      K     123         26.503
LGA    K     124      K     124         21.803
LGA    V     125      V     125         16.046
LGA    G     126      G     126          9.147
LGA    V     127      V     127          4.952
LGA    V     128      V     128          8.250
LGA    G     129      G     129         10.426
LGA    H     130      H     130          7.440
LGA    F     131      F     131         10.652
LGA    P     132      P     132         11.847
LGA    H     133      H     133         16.661
LGA    L     134      L     134         20.017
LGA    E     135      E     135         21.651
LGA    S     136      S     136         22.324
LGA    L     137      L     137         23.196
LGA    L     138      L     138         22.986
LGA    E     139      E     139         23.007
LGA    P     140      P     140         23.859
LGA    I     141      I     141         27.574
LGA    C     142      C     142         22.332
LGA    D     143      D     143         19.620
LGA    L     144      L     144         18.108
LGA    S     145      S     145         15.054
LGA    I     146      I     146         11.892
LGA    L     147      L     147         12.500
LGA    E     148      E     148         11.387
LGA    W     149      W     149         14.848
LGA    S     150      S     150         19.240
LGA    P     151      P     151         23.040
LGA    E     152      E     152         25.701
LGA    E     153      E     153         27.995
LGA    G     154      G     154         24.037
LGA    D     155      D     155         20.405
LGA    Y     156      Y     156         18.780
LGA    P     157      P     157         21.874
LGA    L     158      L     158         22.144
LGA    P     159      P     159         25.318
LGA    A     160      A     160         20.995
LGA    S     161      S     161         17.674
LGA    E     162      E     162         22.373
LGA    F     163      F     163         21.243
LGA    I     164      I     164         14.577
LGA    L     165      L     165         12.420
LGA    P     166      P     166         10.633
LGA    E     167      E     167          6.935
LGA    C     168      C     168          5.533
LGA    D     169      D     169         11.599
LGA    Y     170      Y     170         10.149
LGA    V     171      V     171          8.458
LGA    Y     172      Y     172          9.579
LGA    I     173      I     173          6.935
LGA    T     174      T     174          7.660
LGA    C     175      C     175          9.572
LGA    A     176      A     176          7.390
LGA    S     177      S     177          7.137
LGA    V     178      V     178          5.973
LGA    V     179      V     179          2.518
LGA    D     180      D     180          3.951
LGA    K     181      K     181          3.433
LGA    T     182      T     182          3.999
LGA    L     183      L     183          1.630
LGA    P     184      P     184          2.055
LGA    R     185      R     185          3.933
LGA    L     186      L     186          3.800
LGA    L     187      L     187          2.221
LGA    E     188      E     188          1.448
LGA    L     189      L     189          3.514
LGA    S     190      S     190          4.743
LGA    R     191      R     191          2.091
LGA    N     192      N     192          1.626
LGA    A     193      A     193          1.435
LGA    R     194      R     194          3.898
LGA    R     195      R     195          4.464
LGA    I     196      I     196          3.845
LGA    T     197      T     197          3.187
LGA    L     198      L     198          2.906
LGA    V     199      V     199          3.041
LGA    G     200      G     200          5.408
LGA    P     201      P     201          5.682
LGA    G     202      G     202          5.707
LGA    T     203      T     203          9.820
LGA    P     204      P     204          8.492
LGA    L     205      L     205          7.954
LGA    A     206      A     206         10.143
LGA    P     207      P     207         12.444
LGA    V     208      V     208         10.470
LGA    L     209      L     209          9.374
LGA    F     210      F     210         13.860
LGA    E     211      E     211         15.424
LGA    H     212      H     212         12.271
LGA    G     213      G     213          9.381
LGA    L     214      L     214          3.070
LGA    Q     215      Q     215          1.163
LGA    E     216      E     216          2.781
LGA    L     217      L     217          2.871
LGA    S     218      S     218          8.946
LGA    G     219      G     219          9.572
LGA    F     220      F     220         12.200
LGA    M     221      M     221         15.048
LGA    V     222      V     222         14.712
LGA    K     223      K     223         20.298
LGA    D     224      D     224         21.919
LGA    N     225      N     225         21.821
LGA    A     226      A     226         27.145
LGA    R     227      R     227         26.613
LGA    A     228      A     228         21.502
LGA    F     229      F     229         24.568
LGA    R     230      R     230         29.779
LGA    I     231      I     231         26.803
LGA    V     232      V     232         25.425
LGA    A     233      A     233         30.904
LGA    G     234      G     234         33.368
LGA    A     235      A     235         35.709
LGA    E     236      E     236         38.414
LGA    K     237      K     237         40.735
LGA    V     238      V     238         37.284
LGA    K     239      K     239         34.994
LGA    I     240      I     240         35.610
LGA    Y     241      Y     241         35.748
LGA    S     242      S     242         38.775
LGA    A     243      A     243         36.022
LGA    G     244      G     244         34.076
LGA    Q     245      Q     245         34.176
LGA    K     246      K     246         30.497
LGA    V     247      V     247         30.514
LGA    T     248      T     248         32.863
LGA    I     249      I     249         33.354
LGA    K     250      K     250         37.008
LGA    K     251      K     251         38.427

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     23    2.93    16.723    14.038     0.759

LGA_LOCAL      RMSD =  2.929  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.077  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 17.310  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.471660 * X  +  -0.042493 * Y  +  -0.880756 * Z  +  11.211563
  Y_new =   0.790997 * X  +   0.421035 * Y  +  -0.443906 * Z  +  45.828903
  Z_new =   0.389692 * X  +  -0.906048 * Y  +  -0.164973 * Z  +  62.595459 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.750903    1.390689  [ DEG:  -100.3194     79.6806 ]
  Theta =  -0.400297   -2.741295  [ DEG:   -22.9354   -157.0647 ]
  Phi   =   2.108480   -1.033113  [ DEG:   120.8070    -59.1930 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS393_3-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS393_3-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   23   2.93  14.038    17.31
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS393_3-D2
PFRMAT TS
TARGET T0321
MODEL 3
PARENT N/A
ATOM     97  CA  VAL    97      25.000  68.880  67.182  1.00 25.00           C
ATOM     98  CA  ILE    98      23.640  65.981  69.329  1.00 25.00           C
ATOM     99  CA  PHE    99      23.500  62.173  69.280  1.00 25.00           C
ATOM    100  CA  SER   100      27.153  62.547  68.193  1.00 25.00           C
ATOM    101  CA  ASP   101      27.016  59.128  66.473  1.00 25.00           C
ATOM    102  CA  ALA   102      23.796  60.138  64.664  1.00 25.00           C
ATOM    103  CA  LYS   103      25.436  63.404  63.517  1.00 25.00           C
ATOM    104  CA  ARG   104      28.472  61.456  62.230  1.00 25.00           C
ATOM    105  CA  VAL   105      26.163  59.064  60.330  1.00 25.00           C
ATOM    106  CA  GLU   106      24.314  62.040  58.782  1.00 25.00           C
ATOM    107  CA  ASP   107      27.651  63.595  57.727  1.00 25.00           C
ATOM    108  CA  ARG   108      28.726  60.276  56.146  1.00 25.00           C
ATOM    109  CA  MET   109      30.759  58.114  58.497  1.00 25.00           C
ATOM    110  CA  ASN   110      31.883  55.416  56.085  1.00 25.00           C
ATOM    111  CA  ASP   111      30.507  51.918  55.590  1.00 25.00           C
ATOM    112  CA  PRO   112      33.839  50.049  55.863  1.00 25.00           C
ATOM    113  CA  PHE   113      32.307  47.011  54.106  1.00 25.00           C
ATOM    114  CA  ILE   114      30.974  49.267  51.313  1.00 25.00           C
ATOM    115  CA  MET   115      34.548  49.285  50.076  1.00 25.00           C
ATOM    116  CA  SER   116      33.209  47.914  46.778  1.00 25.00           C
ATOM    117  CA  GLN   117      32.024  49.500  43.561  1.00 25.00           C
ATOM    118  CA  ASN   118      28.225  50.072  43.266  1.00 25.00           C
ATOM    119  CA  GLU   119      24.735  49.308  44.534  1.00 25.00           C
ATOM    120  CA  VAL   120      20.987  50.041  44.114  1.00 25.00           C
ATOM    121  CA  LYS   121      17.549  51.696  43.648  1.00 25.00           C
ATOM    122  CA  GLY   122      16.747  50.890  47.244  1.00 25.00           C
ATOM    123  CA  LYS   123      15.418  47.675  48.851  1.00 25.00           C
ATOM    124  CA  LYS   124      14.091  49.223  52.022  1.00 25.00           C
ATOM    125  CA  VAL   125      16.469  47.196  54.160  1.00 25.00           C
ATOM    126  CA  GLY   126      17.035  44.126  56.364  1.00 25.00           C
ATOM    127  CA  VAL   127      16.528  42.793  59.924  1.00 25.00           C
ATOM    128  CA  VAL   128      20.310  42.394  60.373  1.00 25.00           C
ATOM    129  CA  GLY   129      21.914  45.845  60.232  1.00 25.00           C
ATOM    130  CA  HIS   130      19.250  48.437  59.348  1.00 25.00           C
ATOM    131  CA  PHE   131      20.646  52.009  58.899  1.00 25.00           C
ATOM    132  CA  PRO   132      17.997  53.946  56.945  1.00 25.00           C
ATOM    133  CA  HIS   133      15.479  55.278  54.396  1.00 25.00           C
ATOM    134  CA  LEU   134      15.177  54.133  50.781  1.00 25.00           C
ATOM    135  CA  GLU   135      17.809  55.809  48.607  1.00 25.00           C
ATOM    136  CA  SER   136      21.121  55.002  50.226  1.00 25.00           C
ATOM    137  CA  LEU   137      20.995  51.340  51.066  1.00 25.00           C
ATOM    138  CA  LEU   138      21.462  47.950  49.299  1.00 25.00           C
ATOM    139  CA  GLU   139      20.854  44.945  47.119  1.00 25.00           C
ATOM    140  CA  PRO   140      19.222  43.397  50.181  1.00 25.00           C
ATOM    141  CA  ILE   141      16.218  42.304  48.091  1.00 25.00           C
ATOM    142  CA  CYS   142      14.426  40.665  50.930  1.00 25.00           C
ATOM    143  CA  ASP   143      12.593  43.581  52.483  1.00 25.00           C
ATOM    144  CA  LEU   144      10.217  46.364  53.439  1.00 25.00           C
ATOM    145  CA  SER   145       8.828  48.650  56.186  1.00 25.00           C
ATOM    146  CA  ILE   146       7.668  49.465  59.704  1.00 25.00           C
ATOM    147  CA  LEU   147       5.872  50.794  62.783  1.00 25.00           C
ATOM    148  CA  GLU   148       6.875  49.231  66.039  1.00 25.00           C
ATOM    149  CA  TRP   149       6.398  52.677  67.455  1.00 25.00           C
ATOM    150  CA  SER   150       3.752  50.988  69.601  1.00 25.00           C
ATOM    151  CA  PRO   151       1.221  53.178  71.403  1.00 25.00           C
ATOM    152  CA  GLU   152       0.558  56.313  73.472  1.00 25.00           C
ATOM    153  CA  GLU   153       3.479  55.838  75.771  1.00 25.00           C
ATOM    154  CA  GLY   154       5.714  54.959  72.834  1.00 25.00           C
ATOM    155  CA  ASP   155       8.836  56.921  71.757  1.00 25.00           C
ATOM    156  CA  TYR   156      10.972  54.213  70.053  1.00 25.00           C
ATOM    157  CA  PRO   157      11.165  52.796  73.576  1.00 25.00           C
ATOM    158  CA  LEU   158      10.735  49.494  75.407  1.00 25.00           C
ATOM    159  CA  PRO   159       7.652  47.232  75.198  1.00 25.00           C
ATOM    160  CA  ALA   160       8.122  46.901  71.411  1.00 25.00           C
ATOM    161  CA  SER   161      11.808  45.994  71.923  1.00 25.00           C
ATOM    162  CA  GLU   162      10.822  43.355  74.519  1.00 25.00           C
ATOM    163  CA  PHE   163       8.244  41.895  72.093  1.00 25.00           C
ATOM    164  CA  ILE   164      10.889  41.757  69.326  1.00 25.00           C
ATOM    165  CA  LEU   165      12.889  39.494  71.590  1.00 25.00           C
ATOM    166  CA  PRO   166      13.518  37.413  68.480  1.00 25.00           C
ATOM    167  CA  GLU   167      13.987  35.660  65.137  1.00 25.00           C
ATOM    168  CA  CYS   168      13.441  36.859  61.583  1.00 25.00           C
ATOM    169  CA  ASP   169      12.592  40.350  60.365  1.00 25.00           C
ATOM    170  CA  TYR   170       9.293  41.233  62.138  1.00 25.00           C
ATOM    171  CA  VAL   171       5.714  41.736  63.320  1.00 25.00           C
ATOM    172  CA  TYR   172       2.792  44.187  63.243  1.00 25.00           C
ATOM    173  CA  ILE   173       4.212  47.391  61.816  1.00 25.00           C
ATOM    174  CA  THR   174       2.668  50.252  59.790  1.00 25.00           C
ATOM    175  CA  CYS   175       1.315  52.604  57.124  1.00 25.00           C
ATOM    176  CA  ALA   176      -1.236  49.856  56.346  1.00 25.00           C
ATOM    177  CA  SER   177       1.179  48.296  53.817  1.00 25.00           C
ATOM    178  CA  VAL   178       3.991  48.376  56.415  1.00 25.00           C
ATOM    179  CA  VAL   179       1.699  46.699  58.983  1.00 25.00           C
ATOM    180  CA  ASP   180       0.783  43.991  56.434  1.00 25.00           C
ATOM    181  CA  LYS   181       4.495  43.400  55.693  1.00 25.00           C
ATOM    182  CA  THR   182       5.222  43.103  59.441  1.00 25.00           C
ATOM    183  CA  LEU   183       2.359  40.589  59.823  1.00 25.00           C
ATOM    184  CA  PRO   184       3.726  38.550  56.883  1.00 25.00           C
ATOM    185  CA  ARG   185       7.214  38.563  58.464  1.00 25.00           C
ATOM    186  CA  LEU   186       5.735  37.388  61.796  1.00 25.00           C
ATOM    187  CA  LEU   187       3.861  34.573  60.000  1.00 25.00           C
ATOM    188  CA  GLU   188       7.091  33.516  58.233  1.00 25.00           C
ATOM    189  CA  LEU   189       8.944  33.490  61.585  1.00 25.00           C
ATOM    190  CA  SER   190       6.172  31.346  63.129  1.00 25.00           C
ATOM    191  CA  ARG   191       8.843  28.654  63.195  1.00 25.00           C
ATOM    192  CA  ASN   192      12.443  28.321  64.157  1.00 25.00           C
ATOM    193  CA  ALA   193      13.568  30.847  66.749  1.00 25.00           C
ATOM    194  CA  ARG   194       9.878  31.436  67.229  1.00 25.00           C
ATOM    195  CA  ARG   195       8.364  34.923  66.524  1.00 25.00           C
ATOM    196  CA  ILE   196       9.905  38.042  65.067  1.00 25.00           C
ATOM    197  CA  THR   197       7.943  40.808  66.662  1.00 25.00           C
ATOM    198  CA  LEU   198       7.140  44.566  66.885  1.00 25.00           C
ATOM    199  CA  VAL   199       3.687  45.755  67.999  1.00 25.00           C
ATOM    200  CA  GLY   200       1.174  48.085  66.253  1.00 25.00           C
ATOM    201  CA  PRO   201       1.196  51.392  64.465  1.00 25.00           C
ATOM    202  CA  GLY   202      -0.460  54.537  63.242  1.00 25.00           C
ATOM    203  CA  THR   203      -3.814  55.024  65.058  1.00 25.00           C
ATOM    204  CA  PRO   204      -6.477  52.374  65.710  1.00 25.00           C
ATOM    205  CA  LEU   205      -5.990  48.918  67.223  1.00 25.00           C
ATOM    206  CA  ALA   206      -2.831  50.699  68.452  1.00 25.00           C
ATOM    207  CA  PRO   207      -3.934  50.199  72.085  1.00 25.00           C
ATOM    208  CA  VAL   208      -4.555  46.481  71.410  1.00 25.00           C
ATOM    209  CA  LEU   209      -1.083  46.163  69.828  1.00 25.00           C
ATOM    210  CA  PHE   210       0.488  47.881  72.869  1.00 25.00           C
ATOM    211  CA  GLU   211      -1.375  45.492  75.212  1.00 25.00           C
ATOM    212  CA  HIS   212      -0.144  42.492  73.174  1.00 25.00           C
ATOM    213  CA  GLY   213      -0.267  38.839  72.183  1.00 25.00           C
ATOM    214  CA  LEU   214       0.560  36.342  69.427  1.00 25.00           C
ATOM    215  CA  GLN   215       3.760  34.637  70.427  1.00 25.00           C
ATOM    216  CA  GLU   216       6.377  37.204  71.210  1.00 25.00           C
ATOM    217  CA  LEU   217       4.520  40.401  70.347  1.00 25.00           C
ATOM    218  CA  SER   218       4.261  38.983  66.780  1.00 25.00           C
ATOM    219  CA  GLY   219       1.005  40.917  66.815  1.00 25.00           C
ATOM    220  CA  PHE   220      -1.387  43.561  65.461  1.00 25.00           C
ATOM    221  CA  MET   221      -1.862  46.375  62.951  1.00 25.00           C
ATOM    222  CA  VAL   222      -3.422  49.846  62.910  1.00 25.00           C
ATOM    223  CA  LYS   223      -4.081  52.288  60.142  1.00 25.00           C
ATOM    224  CA  ASP   224      -7.539  50.880  59.392  1.00 25.00           C
ATOM    225  CA  ASN   225     -10.509  49.456  57.400  1.00 25.00           C
ATOM    226  CA  ALA   226      -9.605  47.033  54.575  1.00 25.00           C
ATOM    227  CA  ARG   227      -6.160  46.449  56.146  1.00 25.00           C
ATOM    228  CA  ALA   228      -7.797  45.768  59.541  1.00 25.00           C
ATOM    229  CA  PHE   229     -10.208  43.281  57.907  1.00 25.00           C
ATOM    230  CA  ARG   230      -7.269  41.520  56.195  1.00 25.00           C
ATOM    231  CA  ILE   231      -5.414  41.311  59.540  1.00 25.00           C
ATOM    232  CA  VAL   232      -8.532  39.838  61.206  1.00 25.00           C
ATOM    233  CA  ALA   233      -8.840  37.251  58.399  1.00 25.00           C
ATOM    234  CA  GLY   234      -5.151  36.315  58.823  1.00 25.00           C
ATOM    235  CA  ALA   235      -5.659  35.920  62.599  1.00 25.00           C
ATOM    236  CA  GLU   236      -8.708  33.686  61.978  1.00 25.00           C
ATOM    237  CA  LYS   237      -6.676  31.550  59.534  1.00 25.00           C
ATOM    238  CA  VAL   238      -3.869  31.219  62.119  1.00 25.00           C
ATOM    239  CA  LYS   239      -6.411  30.163  64.781  1.00 25.00           C
ATOM    240  CA  ILE   240      -7.870  27.554  62.388  1.00 25.00           C
ATOM    241  CA  TYR   241      -4.356  26.209  61.673  1.00 25.00           C
ATOM    242  CA  SER   242      -2.038  27.464  58.991  1.00 25.00           C
ATOM    243  CA  ALA   243      -2.212  30.562  56.825  1.00 25.00           C
ATOM    244  CA  GLY   244      -1.918  33.190  54.094  1.00 25.00           C
ATOM    245  CA  GLN   245      -2.686  35.414  51.135  1.00 25.00           C
ATOM    246  CA  LYS   246      -2.176  39.037  50.387  1.00 25.00           C
ATOM    247  CA  VAL   247      -5.391  40.850  49.597  1.00 25.00           C
ATOM    248  CA  THR   248      -7.254  41.779  46.414  1.00 25.00           C
ATOM    249  CA  ILE   249      -8.683  45.281  45.840  1.00 25.00           C
ATOM    250  CA  LYS   250     -11.503  44.165  43.474  1.00 25.00           C
ATOM    251  CA  LYS   251     -10.561  42.819  40.030  1.00 25.00           C
TER
END
