
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS599_3-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS599_3-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    78       125 - 202         4.91    18.24
  LCS_AVERAGE:     38.62

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       155 - 177         1.78    17.36
  LONGEST_CONTINUOUS_SEGMENT:    23       156 - 178         1.97    17.49
  LCS_AVERAGE:     10.44

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       160 - 175         0.89    17.61
  LCS_AVERAGE:      5.93

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      4    5    7     3    3    4    5    5    5    7    9   10   10   10   12   15   17   24   25   32   35   40   40 
LCS_GDT     I      98     I      98      4    5   10     3    3    4    5    5    5    7    9   10   10   10   13   16   18   24   25   32   35   37   43 
LCS_GDT     F      99     F      99      4    5   17     3    3    4    5    5    6    7    9   10   10   10   13   23   29   33   36   41   46   52   56 
LCS_GDT     S     100     S     100      4    5   17     3    3    4    5    5    6    7    9   12   13   18   22   26   30   33   36   41   46   51   62 
LCS_GDT     D     101     D     101      4    5   17     3    4    4    7   11   12   13   15   17   19   20   25   27   39   41   44   53   57   65   67 
LCS_GDT     A     102     A     102      4    5   19     3    4    4    5    6    6    9   12   14   17   20   25   38   39   42   44   47   50   53   57 
LCS_GDT     N     110     N     110      4    5   19     3    4    4    5   12   14   17   17   21   24   29   34   38   42   42   44   47   50   62   65 
LCS_GDT     D     111     D     111      7   14   19     7    8    8   11   14   15   17   19   21   24   26   28   32   32   36   43   45   47   49   54 
LCS_GDT     P     112     P     112      7   14   19     7    8    9   12   14   15   17   19   21   24   26   28   32   38   41   43   47   50   53   65 
LCS_GDT     F     113     F     113      7   14   19     7    8    9   12   14   15   17   19   21   24   26   28   35   38   41   43   47   50   53   65 
LCS_GDT     I     114     I     114      7   14   19     7    8    9   12   14   15   17   19   21   24   29   32   35   38   41   44   47   50   60   65 
LCS_GDT     M     115     M     115      9   14   19     7    8    9   12   14   15   17   19   21   24   29   33   38   42   42   47   51   59   65   70 
LCS_GDT     S     116     S     116      9   14   19     7    8   10   12   14   15   17   19   21   24   29   34   38   42   42   50   57   65   69   73 
LCS_GDT     Q     117     Q     117      9   14   19     7    8   10   12   14   15   17   19   21   24   29   34   38   42   42   47   53   60   66   72 
LCS_GDT     N     118     N     118      9   14   19     4    8   10   12   14   15   17   19   21   24   29   34   38   42   42   49   53   63   69   72 
LCS_GDT     E     119     E     119      9   14   19     4    8   10   12   14   15   17   19   21   25   29   34   38   45   54   60   67   70   74   77 
LCS_GDT     V     120     V     120      9   14   19     4    8   10   12   14   15   17   19   21   25   29   34   38   45   54   60   67   70   74   78 
LCS_GDT     K     121     K     121      9   14   19     4    8   10   12   14   15   17   19   21   24   29   34   38   42   42   49   57   63   69   73 
LCS_GDT     G     122     G     122      9   14   30     4    8   10   12   13   14   17   19   21   24   29   34   38   42   51   53   56   62   67   72 
LCS_GDT     K     123     K     123      9   14   33     4    8   10   12   13   14   17   19   21   24   29   34   39   45   54   60   67   70   74   77 
LCS_GDT     K     124     K     124      9   14   34     4    7   10   12   13   14   17   17   20   24   29   34   39   50   54   63   67   70   72   77 
LCS_GDT     V     125     V     125      8   12   78     4    7    8   10   10   19   23   33   39   51   55   58   62   68   71   74   78   80   83   84 
LCS_GDT     G     126     G     126      8   10   78     4    7    8   13   14   18   19   21   22   33   51   55   59   65   71   74   78   80   83   84 
LCS_GDT     V     127     V     127      8    9   78     4    7   12   13   16   18   27   43   54   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     V     128     V     128      8    9   78     4    7    8   10   10   12   13   20   20   23   29   36   42   47   66   75   78   80   83   84 
LCS_GDT     G     129     G     129      8    9   78     4    7    8   10   10   12   18   20   22   30   34   51   63   68   72   75   78   80   83   84 
LCS_GDT     H     130     H     130      5   16   78     4    4    6    7   13   18   21   25   28   39   47   58   63   68   72   75   78   80   83   84 
LCS_GDT     F     131     F     131      5   16   78     4    4    8   12   16   18   21   25   28   39   45   58   63   68   72   75   78   80   83   84 
LCS_GDT     P     132     P     132      5   16   78     3    4    6   12   16   18   21   25   28   36   45   56   63   66   71   75   78   80   83   84 
LCS_GDT     H     133     H     133      7   16   78     6    6   11   13   16   18   24   28   36   43   53   60   64   68   72   75   78   80   83   84 
LCS_GDT     L     134     L     134     10   17   78     6    6   11   13   16   18   24   39   47   58   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     E     135     E     135     11   17   78     6    7   12   22   26   33   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     S     136     S     136     11   17   78     6    8   12   14   23   30   34   43   51   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     137     L     137     11   17   78     6    6   12   13   16   25   31   42   52   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     138     L     138     11   17   78     6    8   12   18   27   33   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     E     139     E     139     11   17   78     4    8   12   18   27   31   44   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     P     140     P     140     11   17   78     4    8   12   17   27   31   40   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     I     141     I     141     11   17   78     4    8   12   21   27   34   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     C     142     C     142     11   17   78     4    9   16   22   27   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     D     143     D     143     11   17   78     4    8   13   14   24   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     144     L     144     11   17   78     5    8   13   14   22   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     S     145     S     145     11   17   78     5    8   13   14   21   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     I     146     I     146     10   17   78     5    8   13   15   24   37   45   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     147     L     147     10   17   78     5    8   13   14   21   36   45   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     E     148     E     148     10   17   78     5    8   13   16   27   37   45   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     W     149     W     149     10   17   78     3    8   13   14   22   36   45   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     S     150     S     150     10   17   78     3    7   13   15   22   31   43   51   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     P     151     P     151      5   19   78     3    5   10   23   30   34   43   50   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     E     152     E     152      5   19   78     3    4   10   19   27   31   40   47   53   55   60   63   65   69   71   73   77   79   81   84 
LCS_GDT     E     153     E     153      4   19   78     3    4    4    5   12   19   31   37   43   50   54   59   62   66   69   72   76   78   80   84 
LCS_GDT     G     154     G     154      4   19   78     3    4    8   12   16   22   31   37   45   51   57   60   62   68   70   73   76   78   81   84 
LCS_GDT     D     155     D     155      7   23   78     4    7   10   23   30   34   43   51   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     Y     156     Y     156      7   23   78     4   10   17   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     P     157     P     157      7   23   78     4   12   19   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     158     L     158      7   23   78     4    7   10   21   29   36   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     P     159     P     159      7   23   78     4    7   12   20   28   36   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     A     160     A     160     16   23   78     5   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     S     161     S     161     16   23   78     5   17   21   26   30   36   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     E     162     E     162     16   23   78     5   15   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     F     163     F     163     16   23   78     5    9   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     I     164     I     164     16   23   78     5    9   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     165     L     165     16   23   78     6   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     P     166     P     166     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     E     167     E     167     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     C     168     C     168     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     D     169     D     169     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     Y     170     Y     170     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     V     171     V     171     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     Y     172     Y     172     16   23   78     6   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     I     173     I     173     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     T     174     T     174     16   23   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     C     175     C     175     16   23   78     4   15   21   24   28   36   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     A     176     A     176      7   23   78     6   10   19   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     S     177     S     177      7   23   78     5    6    7   21   28   36   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     V     178     V     178      7   23   78     5    6    7    8   12   25   32   37   49   57   62   65   67   70   72   75   78   80   83   84 
LCS_GDT     V     179     V     179      7    7   78     5    6    7    8    9    9   16   26   36   42   54   62   67   69   72   75   78   80   83   84 
LCS_GDT     D     180     D     180      7   14   78     5    6    7   10   22   32   42   51   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     K     181     K     181     11   14   78     5    6   19   26   29   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     T     182     T     182     11   14   78     9   10   19   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     183     L     183     11   14   78     9   10   13   23   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     P     184     P     184     11   14   78     9   10   14   24   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     R     185     R     185     11   14   78     9   10   19   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     186     L     186     11   14   78     9   10   13   15   27   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     187     L     187     11   14   78     9   10   11   16   27   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     E     188     E     188     11   14   78     9   10   14   22   28   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     189     L     189     11   14   78     9   10   10   14   21   31   42   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     S     190     S     190     11   14   78     9   10   10   13   15   21   36   42   54   58   62   65   67   70   72   75   78   80   83   84 
LCS_GDT     R     191     R     191     11   14   78     4   10   13   17   27   31   42   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     N     192     N     192      4   14   78     4    6   13   17   27   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     A     193     A     193      4   14   78     4    8   13   17   27   32   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     R     194     R     194      7   12   78     4    7    9   19   26   33   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     R     195     R     195      7   12   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     I     196     I     196      7   12   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     T     197     T     197      7   12   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     L     198     L     198      7   12   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     V     199     V     199      7   12   78    11   17   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     G     200     G     200      7   12   78     3   14   21   26   30   37   46   52   57   60   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     P     201     P     201      4   12   78     3    3   10   18   27   32   41   49   55   58   62   65   67   70   72   75   78   80   83   84 
LCS_GDT     G     202     G     202      4    8   78     3    3    5   10   17   25   32   36   48   53   59   63   66   70   72   75   78   80   83   84 
LCS_GDT     T     203     T     203      3    4   77     3    3    3    4    6    8   10   17   26   30   38   50   58   62   69   74   78   80   83   84 
LCS_GDT     P     204     P     204      3    4   73     3    3    4    5    9   13   15   18   26   30   38   45   55   62   66   72   78   79   82   84 
LCS_GDT     L     205     L     205      3   11   52     3    3    4    8    9   14   17   20   20   25   30   35   41   60   63   70   74   79   82   84 
LCS_GDT     A     206     A     206      5   19   27     3    4    8    9   12   15   19   20   20   22   22   30   34   38   41   43   49   53   54   60 
LCS_GDT     P     207     P     207      7   19   27     4    5    8    9   11   15   19   20   20   22   22   23   25   28   41   43   44   47   49   51 
LCS_GDT     V     208     V     208      7   19   27     4    9   14   16   17   17   19   20   20   22   22   23   25   28   41   43   44   45   47   51 
LCS_GDT     L     209     L     209      7   19   27     4    9   14   16   17   17   19   20   20   25   28   33   38   43   45   48   51   53   57   59 
LCS_GDT     F     210     F     210      7   19   27     4    6   13   16   17   17   19   20   22   27   30   33   38   43   45   48   51   53   57   59 
LCS_GDT     E     211     E     211      7   19   27     4    7   13   16   17   17   19   20   20   22   26   30   34   38   44   46   51   53   56   57 
LCS_GDT     H     212     H     212      7   19   40     4    9   14   16   17   17   19   20   20   22   22   25   28   31   34   38   46   53   54   58 
LCS_GDT     G     213     G     213      8   19   40     6    9   14   16   17   17   19   20   20   23   25   33   41   43   45   48   52   54   57   59 
LCS_GDT     L     214     L     214      8   19   40     6    9   14   16   17   17   19   20   29   34   37   39   43   47   49   50   54   57   58   61 
LCS_GDT     Q     215     Q     215      8   19   40     6    8   14   16   17   17   24   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     E     216     E     216      8   19   40     6    8   14   16   17   17   19   30   36   38   40   43   45   47   50   60   71   76   81   84 
LCS_GDT     L     217     L     217      8   19   40     6    9   14   16   17   17   23   31   36   38   40   44   55   64   69   75   78   80   83   84 
LCS_GDT     S     218     S     218      8   19   40     4    9   14   16   17   17   19   31   37   47   61   65   67   70   72   75   78   80   83   84 
LCS_GDT     G     219     G     219      8   19   40     6    7    9   15   17   17   19   30   37   50   63   65   67   70   72   75   78   80   83   84 
LCS_GDT     F     220     F     220      8   19   40     3    9   14   16   17   17   19   21   30   38   54   60   63   69   70   73   77   80   81   84 
LCS_GDT     M     221     M     221      6   19   40     3    9   14   16   17   17   23   31   36   38   40   43   45   47   58   64   72   78   80   84 
LCS_GDT     V     222     V     222      6   19   40     3    9   14   16   17   17   24   31   36   38   40   43   50   63   65   70   72   75   80   84 
LCS_GDT     K     223     K     223     12   19   40     3   12   14   16   17   17   20   24   29   38   40   42   45   47   50   52   56   63   73   78 
LCS_GDT     D     224     D     224     12   19   40     4   12   14   16   17   17   26   31   36   38   40   43   45   47   50   56   61   66   72   77 
LCS_GDT     N     225     N     225     12   18   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   56   62   65   75 
LCS_GDT     A     226     A     226     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   56   61   65   73 
LCS_GDT     R     227     R     227     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   56   63   68   75 
LCS_GDT     A     228     A     228     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   56   63   67   75 
LCS_GDT     F     229     F     229     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   55   58   62   67 
LCS_GDT     R     230     R     230     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     I     231     I     231     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     V     232     V     232     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     A     233     A     233     12   16   40     8   12   12   13   15   20   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     G     234     G     234     12   16   40     8   12   12   12   15   16   23   29   36   37   40   43   45   47   50   52   54   58   61   66 
LCS_GDT     A     235     A     235      4   16   40     3    3    4    5   11   17   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     E     236     E     236      4   16   40     3    3    6    8   14   20   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     K     237     K     237      4   16   40     3    3    4   11   14   16   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     V     238     V     238      3   16   40     3    5   11   13   15   20   26   31   36   38   40   43   45   47   50   52   55   58   61   66 
LCS_GDT     K     239     K     239      5    8   40     4    4    5    6   12   19   26   31   36   38   40   43   45   47   50   54   61   65   69   72 
LCS_GDT     I     240     I     240      5    8   40     4    5    5    6    9   16   18   23   29   33   39   43   45   52   60   64   67   70   72   75 
LCS_GDT     Y     241     Y     241      5    8   40     4    5    5    7   13   20   26   31   36   38   40   43   45   50   56   61   67   70   72   75 
LCS_GDT     S     242     S     242      5    8   40     4    5    5   13   15   16   19   31   36   38   40   43   45   47   50   57   61   65   70   73 
LCS_GDT     A     243     A     243      5    9   40     4    5    5    7   12   13   15   18   22   31   39   46   53   60   64   66   70   73   76   81 
LCS_GDT     G     244     G     244      8    9   40     4    5    8    9   14   20   26   34   38   43   50   56   59   64   67   71   72   75   80   84 
LCS_GDT     Q     245     Q     245      8    9   40     4    7    8    9   12   20   26   31   36   39   46   56   59   64   66   71   72   75   80   84 
LCS_GDT     K     246     K     246      8    9   40     3    7    8   18   24   29   40   49   53   55   60   63   65   67   71   73   78   80   81   84 
LCS_GDT     V     247     V     247      8    9   40     4    7    8   10   14   23   32   43   50   57   61   64   67   70   72   75   78   80   83   84 
LCS_GDT     T     248     T     248      8    9   40     4    7    8   18   25   31   38   49   55   58   62   65   67   70   72   75   78   80   83   84 
LCS_GDT     I     249     I     249      8    9   40     4    7    8   10   14   20   26   31   36   43   51   60   64   67   72   75   78   80   83   84 
LCS_GDT     K     250     K     250      8    9   40     4    7    8    9   14   20   26   31   36   38   40   46   57   63   69   75   78   80   83   84 
LCS_GDT     K     251     K     251      8    9   40     3    7    8    9   14   20   26   31   36   38   40   43   45   47   50   52   57   66   72   81 
LCS_AVERAGE  LCS_A:  18.33  (   5.93   10.44   38.62 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     17     21     26     30     37     46     52     57     60     63     65     67     70     72     75     78     80     83     84 
GDT PERCENT_CA   7.43  11.49  14.19  17.57  20.27  25.00  31.08  35.14  38.51  40.54  42.57  43.92  45.27  47.30  48.65  50.68  52.70  54.05  56.08  56.76
GDT RMS_LOCAL    0.34   0.61   0.83   1.32   1.61   2.22   2.52   2.76   2.98   3.23   3.43   3.48   3.60   3.85   4.01   4.35   4.62   4.77   5.21   5.14
GDT RMS_ALL_CA  17.49  17.60  17.66  17.29  17.08  17.18  17.51  17.61  17.47  17.81  17.92  17.87  17.87  18.05  18.11  18.34  18.50  18.52  18.85  17.92

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         35.141
LGA    I      98      I      98         37.597
LGA    F      99      F      99         36.470
LGA    S     100      S     100         39.714
LGA    D     101      D     101         38.934
LGA    A     102      A     102         43.190
LGA    N     110      N     110         30.301
LGA    D     111      D     111         30.196
LGA    P     112      P     112         25.419
LGA    F     113      F     113         24.484
LGA    I     114      I     114         27.128
LGA    M     115      M     115         24.087
LGA    S     116      S     116         19.908
LGA    Q     117      Q     117         22.228
LGA    N     118      N     118         22.922
LGA    E     119      E     119         16.809
LGA    V     120      V     120         15.616
LGA    K     121      K     121         20.587
LGA    G     122      G     122         20.500
LGA    K     123      K     123         15.016
LGA    K     124      K     124         14.131
LGA    V     125      V     125          8.487
LGA    G     126      G     126          8.269
LGA    V     127      V     127          4.884
LGA    V     128      V     128          9.215
LGA    G     129      G     129          8.700
LGA    H     130      H     130          9.302
LGA    F     131      F     131          9.917
LGA    P     132      P     132         11.240
LGA    H     133      H     133          8.826
LGA    L     134      L     134          6.272
LGA    E     135      E     135          2.702
LGA    S     136      S     136          5.832
LGA    L     137      L     137          6.166
LGA    L     138      L     138          2.671
LGA    E     139      E     139          3.035
LGA    P     140      P     140          3.919
LGA    I     141      I     141          2.084
LGA    C     142      C     142          0.989
LGA    D     143      D     143          2.872
LGA    L     144      L     144          2.815
LGA    S     145      S     145          3.371
LGA    I     146      I     146          3.610
LGA    L     147      L     147          3.950
LGA    E     148      E     148          3.970
LGA    W     149      W     149          4.618
LGA    S     150      S     150          6.147
LGA    P     151      P     151          6.436
LGA    E     152      E     152          8.531
LGA    E     153      E     153         11.335
LGA    G     154      G     154          9.793
LGA    D     155      D     155          5.911
LGA    Y     156      Y     156          3.770
LGA    P     157      P     157          1.954
LGA    L     158      L     158          3.113
LGA    P     159      P     159          3.225
LGA    A     160      A     160          2.780
LGA    S     161      S     161          3.499
LGA    E     162      E     162          2.983
LGA    F     163      F     163          2.925
LGA    I     164      I     164          3.200
LGA    L     165      L     165          1.798
LGA    P     166      P     166          2.960
LGA    E     167      E     167          2.985
LGA    C     168      C     168          2.441
LGA    D     169      D     169          2.631
LGA    Y     170      Y     170          2.123
LGA    V     171      V     171          1.603
LGA    Y     172      Y     172          1.543
LGA    I     173      I     173          1.547
LGA    T     174      T     174          1.306
LGA    C     175      C     175          2.585
LGA    A     176      A     176          3.058
LGA    S     177      S     177          3.327
LGA    V     178      V     178          5.789
LGA    V     179      V     179          7.053
LGA    D     180      D     180          5.202
LGA    K     181      K     181          2.547
LGA    T     182      T     182          2.754
LGA    L     183      L     183          3.808
LGA    P     184      P     184          3.828
LGA    R     185      R     185          2.569
LGA    L     186      L     186          3.186
LGA    L     187      L     187          3.367
LGA    E     188      E     188          2.259
LGA    L     189      L     189          4.386
LGA    S     190      S     190          5.432
LGA    R     191      R     191          3.696
LGA    N     192      N     192          1.796
LGA    A     193      A     193          2.865
LGA    R     194      R     194          3.624
LGA    R     195      R     195          1.964
LGA    I     196      I     196          1.369
LGA    T     197      T     197          1.649
LGA    L     198      L     198          1.052
LGA    V     199      V     199          1.323
LGA    G     200      G     200          3.021
LGA    P     201      P     201          5.017
LGA    G     202      G     202          8.281
LGA    T     203      T     203         13.923
LGA    P     204      P     204         16.812
LGA    L     205      L     205         17.463
LGA    A     206      A     206         22.759
LGA    P     207      P     207         28.099
LGA    V     208      V     208         29.407
LGA    L     209      L     209         25.945
LGA    F     210      F     210         29.738
LGA    E     211      E     211         35.500
LGA    H     212      H     212         33.459
LGA    G     213      G     213         31.716
LGA    L     214      L     214         24.933
LGA    Q     215      Q     215         23.395
LGA    E     216      E     216         17.165
LGA    L     217      L     217         13.619
LGA    S     218      S     218          8.097
LGA    G     219      G     219          7.006
LGA    F     220      F     220          8.795
LGA    M     221      M     221         10.911
LGA    V     222      V     222         13.019
LGA    K     223      K     223         17.184
LGA    D     224      D     224         20.559
LGA    N     225      N     225         23.695
LGA    A     226      A     226         27.604
LGA    R     227      R     227         26.505
LGA    A     228      A     228         25.108
LGA    F     229      F     229         29.887
LGA    R     230      R     230         32.918
LGA    I     231      I     231         30.584
LGA    V     232      V     232         30.427
LGA    A     233      A     233         36.138
LGA    G     234      G     234         38.270
LGA    A     235      A     235         39.172
LGA    E     236      E     236         36.545
LGA    K     237      K     237         33.973
LGA    V     238      V     238         29.672
LGA    K     239      K     239         24.900
LGA    I     240      I     240         21.652
LGA    Y     241      Y     241         21.175
LGA    S     242      S     242         21.506
LGA    A     243      A     243         17.236
LGA    G     244      G     244         14.900
LGA    Q     245      Q     245         13.570
LGA    K     246      K     246          8.059
LGA    V     247      V     247          6.581
LGA    T     248      T     248          6.100
LGA    I     249      I     249         12.255
LGA    K     250      K     250         15.451
LGA    K     251      K     251         21.988

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     52    2.76    28.716    25.159     1.818

LGA_LOCAL      RMSD =  2.761  Number of atoms =   52  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.839  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 15.531  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.717872 * X  +  -0.644191 * Y  +  -0.263967 * Z  +  -0.634365
  Y_new =  -0.680583 * X  +   0.569593 * Y  +   0.460837 * Z  +  47.959049
  Z_new =  -0.146513 * X  +   0.510473 * Y  +  -0.847320 * Z  +  61.956150 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.599369   -0.542224  [ DEG:   148.9329    -31.0671 ]
  Theta =   0.147042    2.994550  [ DEG:     8.4249    171.5751 ]
  Phi   =  -2.382852    0.758740  [ DEG:  -136.5274     43.4726 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS599_3-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS599_3-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   52   2.76  25.159    15.53
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS599_3-D2
PFRMAT TS                                                                       
TARGET T0321                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM     97  CA  VAL    97     -12.804  42.832  46.544  1.00  0.00              
ATOM     98  CA  ILE    98     -16.179  42.539  48.890  1.00  0.00              
ATOM     99  CA  PHE    99     -16.181  41.013  51.770  1.00  0.00              
ATOM    100  CA  SER   100     -19.697  40.145  53.162  1.00  0.00              
ATOM    101  CA  ASP   101     -19.303  37.085  55.201  1.00  0.00              
ATOM    102  CA  ALA   102     -16.949  34.916  53.257  1.00  0.00              
ATOM    103  CA  LYS   103     -14.167  34.271  55.768  1.00  0.00              
ATOM    104  CA  ARG   104     -10.904  34.610  53.832  1.00  0.00              
ATOM    105  CA  VAL   105      -9.117  31.231  53.651  1.00  0.00              
ATOM    106  CA  GLU   106      -5.882  31.850  55.564  1.00  0.00              
ATOM    107  CA  ASP   107      -2.962  29.727  54.524  1.00  0.00              
ATOM    108  CA  ARG   108      -1.929  28.834  57.915  1.00  0.00              
ATOM    109  CA  MET   109      -5.050  27.064  59.251  1.00  0.00              
ATOM    110  CA  ASN   110      -6.758  29.014  61.938  1.00  0.00              
ATOM    111  CA  ASP   111      -6.388  26.354  64.646  1.00  0.00              
ATOM    112  CA  PRO   112      -2.612  26.109  64.159  1.00  0.00              
ATOM    113  CA  PHE   113      -2.160  29.868  64.322  1.00  0.00              
ATOM    114  CA  ILE   114      -4.166  30.131  67.464  1.00  0.00              
ATOM    115  CA  MET   115      -2.317  27.609  69.142  1.00  0.00              
ATOM    116  CA  SER   116       0.894  29.243  68.313  1.00  0.00              
ATOM    117  CA  GLN   117      -0.274  32.587  69.490  1.00  0.00              
ATOM    118  CA  ASN   118      -1.364  31.186  72.848  1.00  0.00              
ATOM    119  CA  GLU   119       2.149  29.884  73.484  1.00  0.00              
ATOM    120  CA  VAL   120       3.756  33.287  73.019  1.00  0.00              
ATOM    121  CA  LYS   121       2.002  35.543  75.300  1.00  0.00              
ATOM    122  CA  GLY   122       4.811  37.520  76.963  1.00  0.00              
ATOM    123  CA  LYS   123       7.504  36.836  74.651  1.00  0.00              
ATOM    124  CA  LYS   124       9.787  39.687  74.740  1.00  0.00              
ATOM    125  CA  VAL   125      11.676  40.935  71.487  1.00  0.00              
ATOM    126  CA  GLY   126      14.349  42.965  71.494  1.00  0.00              
ATOM    127  CA  VAL   127      15.394  45.293  68.776  1.00  0.00              
ATOM    128  CA  VAL   128      18.924  46.643  67.986  1.00  0.00              
ATOM    129  CA  GLY   129      19.266  49.342  66.630  1.00  0.00              
ATOM    130  CA  HIS   130      22.471  51.956  66.172  1.00  0.00              
ATOM    131  CA  PHE   131      23.492  53.712  68.654  1.00  0.00              
ATOM    132  CA  PRO   132      27.286  52.938  68.681  1.00  0.00              
ATOM    133  CA  HIS   133      27.882  51.581  72.173  1.00  0.00              
ATOM    134  CA  LEU   134      24.471  49.823  72.184  1.00  0.00              
ATOM    135  CA  GLU   135      24.793  48.177  68.861  1.00  0.00              
ATOM    136  CA  SER   136      27.983  46.944  69.511  1.00  0.00              
ATOM    137  CA  LEU   137      26.820  45.339  72.751  1.00  0.00              
ATOM    138  CA  LEU   138      23.855  43.857  70.925  1.00  0.00              
ATOM    139  CA  GLU   139      26.048  42.246  68.241  1.00  0.00              
ATOM    140  CA  PRO   140      28.436  40.797  70.752  1.00  0.00              
ATOM    141  CA  ILE   141      25.911  39.263  72.963  1.00  0.00              
ATOM    142  CA  CYS   142      23.051  38.576  70.935  1.00  0.00              
ATOM    143  CA  ASP   143      21.395  38.197  67.442  1.00  0.00              
ATOM    144  CA  LEU   144      19.427  40.596  67.245  1.00  0.00              
ATOM    145  CA  SER   145      17.347  41.526  63.821  1.00  0.00              
ATOM    146  CA  ILE   146      14.951  44.790  63.177  1.00  0.00              
ATOM    147  CA  LEU   147      12.755  44.440  60.766  1.00  0.00              
ATOM    148  CA  GLU   148      10.860  48.131  59.260  1.00  0.00              
ATOM    149  CA  TRP   149       8.973  48.234  56.823  1.00  0.00              
ATOM    150  CA  SER   150       9.434  51.850  55.921  1.00  0.00              
ATOM    151  CA  PRO   151      12.570  52.744  54.100  1.00  0.00              
ATOM    152  CA  GLU   152      13.401  56.088  55.636  1.00  0.00              
ATOM    153  CA  GLU   153      13.761  55.212  59.324  1.00  0.00              
ATOM    154  CA  GLY   154      15.649  51.972  59.127  1.00  0.00              
ATOM    155  CA  ASP   155      17.762  51.238  56.130  1.00  0.00              
ATOM    156  CA  TYR   156      17.107  47.607  55.437  1.00  0.00              
ATOM    157  CA  PRO   157      17.241  46.463  51.825  1.00  0.00              
ATOM    158  CA  LEU   158      14.778  43.720  51.193  1.00  0.00              
ATOM    159  CA  PRO   159      17.374  40.973  50.523  1.00  0.00              
ATOM    160  CA  ALA   160      19.194  41.913  53.738  1.00  0.00              
ATOM    161  CA  SER   161      15.947  41.866  55.816  1.00  0.00              
ATOM    162  CA  GLU   162      15.270  38.238  54.768  1.00  0.00              
ATOM    163  CA  PHE   163      18.811  37.308  55.750  1.00  0.00              
ATOM    164  CA  ILE   164      18.480  38.986  59.177  1.00  0.00              
ATOM    165  CA  LEU   165      15.284  37.245  59.962  1.00  0.00              
ATOM    166  CA  PRO   166      16.669  33.843  59.052  1.00  0.00              
ATOM    167  CA  GLU   167      19.715  34.054  61.267  1.00  0.00              
ATOM    168  CA  CYS   168      18.316  35.666  64.293  1.00  0.00              
ATOM    169  CA  ASP   169      17.157  34.866  67.804  1.00  0.00              
ATOM    170  CA  TYR   170      15.070  37.439  68.076  1.00  0.00              
ATOM    171  CA  VAL   171      13.107  39.441  66.158  1.00  0.00              
ATOM    172  CA  TYR   172      11.520  42.419  66.059  1.00  0.00              
ATOM    173  CA  ILE   173       8.727  44.519  64.098  1.00  0.00              
ATOM    174  CA  THR   174       7.682  47.703  63.699  1.00  0.00              
ATOM    175  CA  CYS   175       4.657  48.697  62.733  1.00  0.00              
ATOM    176  CA  ALA   176       1.563  47.693  60.665  1.00  0.00              
ATOM    177  CA  SER   177       3.222  47.664  57.292  1.00  0.00              
ATOM    178  CA  VAL   178       6.037  45.331  58.295  1.00  0.00              
ATOM    179  CA  VAL   179       3.840  42.766  60.033  1.00  0.00              
ATOM    180  CA  ASP   180       1.079  42.910  57.466  1.00  0.00              
ATOM    181  CA  LYS   181       3.193  42.546  54.343  1.00  0.00              
ATOM    182  CA  THR   182       5.184  39.677  55.614  1.00  0.00              
ATOM    183  CA  LEU   183       2.336  37.677  57.072  1.00  0.00              
ATOM    184  CA  PRO   184       3.247  34.381  55.628  1.00  0.00              
ATOM    185  CA  ARG   185       6.821  34.744  56.811  1.00  0.00              
ATOM    186  CA  LEU   186       5.808  35.817  60.328  1.00  0.00              
ATOM    187  CA  LEU   187       3.408  32.993  60.765  1.00  0.00              
ATOM    188  CA  GLU   188       6.001  30.454  59.623  1.00  0.00              
ATOM    189  CA  LEU   189       8.458  31.939  62.172  1.00  0.00              
ATOM    190  CA  SER   190       5.995  31.923  64.987  1.00  0.00              
ATOM    191  CA  ARG   191       5.628  28.181  64.569  1.00  0.00              
ATOM    192  CA  ASN   192       9.252  27.691  64.617  1.00  0.00              
ATOM    193  CA  ALA   193      10.340  29.453  67.914  1.00  0.00              
ATOM    194  CA  ARG   194      12.026  31.981  67.158  1.00  0.00              
ATOM    195  CA  ARG   195      10.482  35.279  69.421  1.00  0.00              
ATOM    196  CA  ILE   196       8.745  37.639  67.679  1.00  0.00              
ATOM    197  CA  THR   197       8.083  41.286  69.437  1.00  0.00              
ATOM    198  CA  LEU   198       5.604  43.599  67.861  1.00  0.00              
ATOM    199  CA  VAL   199       6.256  47.079  68.538  1.00  0.00              
ATOM    200  CA  GLY   200       3.885  50.138  66.646  1.00  0.00              
ATOM    201  CA  PRO   201       4.505  53.001  65.384  1.00  0.00              
ATOM    202  CA  GLY   202       6.799  52.714  62.366  1.00  0.00              
ATOM    203  CA  THR   203       8.518  56.043  61.639  1.00  0.00              
ATOM    204  CA  PRO   204       7.526  57.959  64.810  1.00  0.00              
ATOM    205  CA  LEU   205       8.957  55.466  67.414  1.00  0.00              
ATOM    206  CA  ALA   206      12.253  54.788  65.648  1.00  0.00              
ATOM    207  CA  PRO   207      12.912  58.482  65.017  1.00  0.00              
ATOM    208  CA  VAL   208      12.245  59.268  68.721  1.00  0.00              
ATOM    209  CA  LEU   209      14.509  56.427  69.888  1.00  0.00              
ATOM    210  CA  PHE   210      17.328  57.589  67.573  1.00  0.00              
ATOM    211  CA  GLU   211      17.010  61.129  68.838  1.00  0.00              
ATOM    212  CA  HIS   212      17.112  60.134  72.448  1.00  0.00              
ATOM    213  CA  GLY   213      20.251  58.063  72.026  1.00  0.00              
ATOM    214  CA  LEU   214      18.467  54.678  72.296  1.00  0.00              
ATOM    215  CA  GLN   215      20.496  51.706  71.722  1.00  0.00              
ATOM    216  CA  GLU   216      18.242  48.705  72.470  1.00  0.00              
ATOM    217  CA  LEU   217      14.571  48.837  71.884  1.00  0.00              
ATOM    218  CA  SER   218      12.568  46.521  74.063  1.00  0.00              
ATOM    219  CA  GLY   219       8.941  45.380  72.230  1.00  0.00              
ATOM    220  CA  PHE   220       6.622  44.231  74.195  1.00  0.00              
ATOM    221  CA  MET   221       3.130  43.503  72.359  1.00  0.00              
ATOM    222  CA  VAL   222      -0.369  43.127  74.520  1.00  0.00              
ATOM    223  CA  LYS   223      -2.589  41.634  72.734  1.00  0.00              
ATOM    224  CA  ASP   224      -6.182  40.810  74.469  1.00  0.00              
ATOM    225  CA  ASN   225      -6.454  37.061  74.078  1.00  0.00              
ATOM    226  CA  ALA   226     -10.206  37.092  73.785  1.00  0.00              
ATOM    227  CA  ARG   227     -10.174  39.509  70.891  1.00  0.00              
ATOM    228  CA  ALA   228      -7.515  37.480  69.060  1.00  0.00              
ATOM    229  CA  PHE   229      -9.318  34.241  69.449  1.00  0.00              
ATOM    230  CA  ARG   230     -12.610  35.700  68.186  1.00  0.00              
ATOM    231  CA  ILE   231     -10.981  37.268  65.157  1.00  0.00              
ATOM    232  CA  VAL   232      -9.110  34.197  64.162  1.00  0.00              
ATOM    233  CA  ALA   233     -11.908  31.743  64.635  1.00  0.00              
ATOM    234  CA  GLY   234     -14.656  33.603  62.813  1.00  0.00              
ATOM    235  CA  ALA   235     -12.868  34.766  59.714  1.00  0.00              
ATOM    236  CA  GLU   236     -13.306  38.366  59.806  1.00  0.00              
ATOM    237  CA  LYS   237     -11.526  40.950  61.812  1.00  0.00              
ATOM    238  CA  VAL   238      -8.501  42.799  60.441  1.00  0.00              
ATOM    239  CA  LYS   239      -9.726  46.307  61.290  1.00  0.00              
ATOM    240  CA  ILE   240     -10.900  45.430  64.809  1.00  0.00              
ATOM    241  CA  TYR   241      -7.715  43.657  65.980  1.00  0.00              
ATOM    242  CA  SER   242      -5.393  46.422  64.800  1.00  0.00              
ATOM    243  CA  ALA   243      -7.432  49.181  66.446  1.00  0.00              
ATOM    244  CA  GLY   244      -7.355  47.602  69.995  1.00  0.00              
ATOM    245  CA  GLN   245      -4.102  46.499  70.120  1.00  0.00              
ATOM    246  CA  LYS   246      -1.265  47.940  72.636  1.00  0.00              
ATOM    247  CA  VAL   247       1.860  48.310  71.829  1.00  0.00              
ATOM    248  CA  THR   248       4.741  49.046  74.289  1.00  0.00              
ATOM    249  CA  ILE   249       8.013  50.319  73.258  1.00  0.00              
ATOM    250  CA  LYS   250      10.644  50.636  75.672  1.00  0.00              
ATOM    251  CA  LYS   251      14.076  52.004  74.737  1.00  0.00              
TER                                                                             
END
