
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS599_5-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS599_5-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40       177 - 216         4.82    24.06
  LCS_AVERAGE:     22.76

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       158 - 180         1.94    24.40
  LONGEST_CONTINUOUS_SEGMENT:    23       159 - 181         1.93    24.11
  LCS_AVERAGE:     10.22

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       160 - 173         0.98    24.18
  LCS_AVERAGE:      5.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      3    5   13     3    3    4    5    5    5    7    8    8    9   11   15   16   18   22   25   28   34   36   39 
LCS_GDT     I      98     I      98      4    5   13     3    3    4    5    5    5    6    8   10   10   13   15   16   17   20   23   27   32   34   39 
LCS_GDT     F      99     F      99      4    5   13     3    3    4    5    5    6    7    8   10   10   13   15   16   18   22   25   28   34   36   39 
LCS_GDT     S     100     S     100      4    5   13     3    3    4    5    5    6    7    8    9   10   13   15   16   17   22   25   27   34   36   39 
LCS_GDT     D     101     D     101      4    5   13     3    3    4    5    5    6    7    8   10   10   13   15   16   17   19   22   27   34   36   39 
LCS_GDT     A     102     A     102      3    5   13     3    3    3    3    4    5    7    7   10   10   13   15   16   17   19   22   25   34   36   39 
LCS_GDT     N     110     N     110      3   15   21     3    3    3    4    7   14   17   20   22   24   26   27   28   32   35   38   39   41   46   47 
LCS_GDT     D     111     D     111      7   15   21     7    7    7   13   13   13   15   17   19   22   25   26   28   29   31   34   37   37   43   45 
LCS_GDT     P     112     P     112      7   15   21     7    7   10   13   13   14   17   20   22   24   26   27   28   29   37   37   41   45   46   48 
LCS_GDT     F     113     F     113      7   15   21     7    7   10   13   13   14   17   20   22   24   26   27   29   36   38   40   42   45   48   52 
LCS_GDT     I     114     I     114      7   15   21     7    7   10   13   13   14   17   20   22   24   26   30   34   36   38   40   42   45   48   52 
LCS_GDT     M     115     M     115      9   15   21     7    7   10   13   13   14   17   20   22   24   26   30   34   36   38   40   42   45   48   51 
LCS_GDT     S     116     S     116      9   15   21     7    7   10   13   13   15   17   20   22   26   28   31   35   36   40   45   47   49   52   56 
LCS_GDT     Q     117     Q     117      9   15   21     7    7   10   13   13   15   17   20   22   29   33   35   37   40   43   47   48   51   54   57 
LCS_GDT     N     118     N     118      9   15   21     4    7   10   13   13   15   17   20   22   26   28   35   37   40   43   47   48   51   54   57 
LCS_GDT     E     119     E     119      9   15   33     5    7   10   13   13   15   17   20   22   26   28   35   37   40   43   47   50   53   55   59 
LCS_GDT     V     120     V     120      9   15   33     4    7   10   13   13   15   17   20   26   29   33   35   38   41   47   50   53   56   60   65 
LCS_GDT     K     121     K     121      9   15   33     5    7   10   13   13   15   18   23   26   30   33   35   37   41   47   51   53   56   60   65 
LCS_GDT     G     122     G     122      9   15   33     5    7   10   13   13   15   19   25   29   36   39   41   43   46   49   52   53   56   61   65 
LCS_GDT     K     123     K     123      9   15   33     4    7   13   20   25   27   31   33   36   37   39   41   43   46   49   52   53   56   61   65 
LCS_GDT     K     124     K     124      9   19   33     4    6   11   19   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     V     125     V     125      8   19   33     4    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     G     126     G     126      8   19   33     4    6    8   19   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     V     127     V     127      8   19   33     4    6   10   18   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     V     128     V     128      8   19   33     4    6    8   11   18   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     G     129     G     129      8   21   33     3    6    8   10   18   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     H     130     H     130      5   21   33     3    5   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     F     131     F     131      5   21   33     3    4   12   19   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     P     132     P     132      5   21   33     3    5   10   18   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     H     133     H     133      7   21   33     6    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   56   60   65 
LCS_GDT     L     134     L     134      7   21   33     6    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     E     135     E     135      8   21   33     6    7   12   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     S     136     S     136      8   21   33     6    8   12   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     L     137     L     137      8   21   33     6    7   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     L     138     L     138      8   21   33     6    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     E     139     E     139      8   21   33     5    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     P     140     P     140      8   21   33     5    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     I     141     I     141      8   21   33     5    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     C     142     C     142      8   21   33     5    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     D     143     D     143      8   21   33     4    7    8   16   21   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     L     144     L     144      8   21   33     4    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     S     145     S     145      8   21   33     4    7   11   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     I     146     I     146      8   21   33     4    7   11   18   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     L     147     L     147      8   21   33     4    8   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     E     148     E     148      8   21   33     3    7   11   17   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     W     149     W     149      8   21   33     3    7   14   20   25   27   31   33   36   37   39   41   43   46   49   52   53   57   61   65 
LCS_GDT     S     150     S     150      8   18   33     3    4    8   12   17   22   30   32   33   36   38   41   43   46   49   52   53   57   61   65 
LCS_GDT     P     151     P     151      4   10   33     3    4    4    4    6   10   13   18   23   27   36   39   42   44   49   52   53   57   61   65 
LCS_GDT     E     152     E     152      4    6   33     3    4    7    9   10   15   17   20   23   27   29   31   37   41   46   49   53   57   61   65 
LCS_GDT     E     153     E     153      4   15   32     3    4    4    7   11   16   19   20   22   27   28   31   35   37   41   45   51   53   58   61 
LCS_GDT     G     154     G     154      7   16   32     3    4    4   11   14   18   19   20   20   27   28   30   35   37   39   44   46   51   55   64 
LCS_GDT     D     155     D     155      7   17   32     3    6    8   11   14   18   19   20   21   27   28   30   33   37   42   44   49   51   60   64 
LCS_GDT     Y     156     Y     156      7   21   32     3    7    8   12   15   18   19   20   21   26   28   31   37   40   45   49   53   57   62   66 
LCS_GDT     P     157     P     157      7   21   32     4    7   12   16   19   20   22   24   25   30   33   35   41   44   48   53   55   59   65   67 
LCS_GDT     L     158     L     158      7   23   32     4   10   11   13   18   20   22   24   26   30   33   35   40   44   48   53   55   59   65   67 
LCS_GDT     P     159     P     159      7   23   32     3    7   14   19   20   21   23   24   26   30   33   35   38   41   45   49   53   58   62   66 
LCS_GDT     A     160     A     160     14   23   32     4   10   15   19   20   21   23   24   26   30   33   36   41   44   47   49   53   57   61   65 
LCS_GDT     S     161     S     161     14   23   32     3   10   15   19   20   21   26   28   33   36   37   40   42   45   49   52   53   57   61   65 
LCS_GDT     E     162     E     162     14   23   32     4   10   14   19   20   21   23   24   27   30   36   40   41   44   47   49   53   57   61   65 
LCS_GDT     F     163     F     163     14   23   32     4   10   14   19   20   21   23   24   27   30   36   40   41   44   47   49   53   57   61   65 
LCS_GDT     I     164     I     164     14   23   32     4   10   14   19   20   21   26   28   33   36   37   40   42   45   49   52   53   57   61   65 
LCS_GDT     L     165     L     165     14   23   32     4   10   15   19   20   24   31   33   35   36   38   41   43   46   49   52   53   57   61   65 
LCS_GDT     P     166     P     166     14   23   32     5   11   15   19   20   21   26   28   33   36   37   40   42   45   49   52   53   56   61   65 
LCS_GDT     E     167     E     167     14   23   32     5   11   15   19   20   27   31   33   35   36   38   41   43   46   49   52   53   56   61   65 
LCS_GDT     C     168     C     168     14   23   32     5   11   15   20   25   27   31   33   36   37   39   41   43   46   49   52   53   56   61   65 
LCS_GDT     D     169     D     169     14   23   32     5   11   15   19   20   24   29   33   36   37   39   41   43   46   49   52   53   56   61   65 
LCS_GDT     Y     170     Y     170     14   23   32     5   11   15   19   20   21   23   24   26   30   35   36   41   45   47   50   53   56   60   65 
LCS_GDT     V     171     V     171     14   23   32     5   11   15   19   20   21   27   31   35   37   39   41   43   46   49   52   53   56   61   65 
LCS_GDT     Y     172     Y     172     14   23   32     5   11   15   19   20   21   23   24   26   32   35   36   41   43   47   50   51   55   60   64 
LCS_GDT     I     173     I     173     14   23   32     5   11   15   19   20   21   27   31   35   37   38   41   43   46   49   52   53   57   61   65 
LCS_GDT     T     174     T     174     13   23   32     3   11   15   19   20   21   23   26   30   34   36   38   41   45   47   50   53   57   61   65 
LCS_GDT     C     175     C     175     13   23   33     5   11   15   19   20   21   23   24   30   32   36   38   41   43   47   50   53   57   61   64 
LCS_GDT     A     176     A     176     13   23   35     4   11   15   19   20   21   27   31   35   37   38   41   43   46   49   52   53   57   62   67 
LCS_GDT     S     177     S     177      9   23   40     5    6   10   17   22   23   28   33   36   37   39   41   43   46   49   53   55   59   65   67 
LCS_GDT     V     178     V     178      7   23   40     5    6    7    8   12   18   29   33   36   37   39   41   43   46   49   53   55   59   65   67 
LCS_GDT     V     179     V     179      7   23   40     5    6    7    8   20   27   31   33   36   37   39   41   43   46   49   53   55   59   65   67 
LCS_GDT     D     180     D     180      7   23   40     5    9   15   20   25   27   31   33   36   37   39   41   43   46   49   53   55   59   65   67 
LCS_GDT     K     181     K     181     11   23   40     5    8   13   20   25   27   31   33   36   37   39   41   43   46   49   53   55   59   65   67 
LCS_GDT     T     182     T     182     11   14   40     9   10   11   11   18   20   23   28   32   36   37   40   42   45   49   53   55   59   65   67 
LCS_GDT     L     183     L     183     11   14   40     9   10   11   11   12   16   17   20   26   29   35   38   41   44   48   53   55   59   65   67 
LCS_GDT     P     184     P     184     11   14   40     9   10   11   11   12   15   17   21   26   29   35   36   41   44   48   53   55   59   65   67 
LCS_GDT     R     185     R     185     11   14   40     9   10   11   11   12   13   17   21   26   29   32   35   40   44   48   53   55   59   65   67 
LCS_GDT     L     186     L     186     11   14   40     9   10   11   11   12   16   17   20   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     L     187     L     187     11   14   40     9   10   11   11   12   16   17   21   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     E     188     E     188     11   14   40     9   10   11   11   12   16   17   21   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     L     189     L     189     11   14   40     9   10   11   11   12   13   17   20   26   29   32   35   37   39   41   46   50   55   59   64 
LCS_GDT     S     190     S     190     11   14   40     9   10   11   11   12   14   17   21   26   29   32   35   37   40   46   52   55   59   65   67 
LCS_GDT     R     191     R     191     11   14   40     8   10   11   11   12   16   17   21   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     N     192     N     192      4   14   40     4    4    8   10   12   16   17   21   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     A     193     A     193      4   13   40     4    4    5    8   12   16   17   21   26   29   32   35   37   44   48   53   55   59   65   67 
LCS_GDT     R     194     R     194      6   13   40     3    6    8   10   12   16   17   20   22   27   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     R     195     R     195      6   13   40     4    6    8   10   12   16   17   20   25   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     I     196     I     196      6   13   40     4    6    8   10   12   16   17   21   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     T     197     T     197      6   13   40     3    6    8   10   12   16   17   21   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     L     198     L     198      6   13   40     4    6    8   10   12   16   17   21   26   29   37   40   42   45   49   53   55   59   65   67 
LCS_GDT     V     199     V     199      6   13   40     4    6    8   10   12   16   17   22   27   35   37   40   42   46   49   53   55   59   65   67 
LCS_GDT     G     200     G     200      6   13   40     3    5    7   10   12   22   25   30   33   36   39   41   43   46   49   53   55   59   65   67 
LCS_GDT     P     201     P     201      6   13   40     3    5    7   10   12   16   17   21   26   29   32   35   41   44   48   53   55   59   65   67 
LCS_GDT     G     202     G     202      4   13   40     3    4    8   10   12   16   17   20   22   24   28   33   41   44   48   53   55   59   65   67 
LCS_GDT     T     203     T     203      3    4   40     3    3    3   10   14   18   19   20   23   24   28   35   37   42   45   51   55   59   65   67 
LCS_GDT     P     204     P     204      3    4   40     3    3    4    8   10   13   17   21   26   29   32   35   37   40   47   51   55   59   65   67 
LCS_GDT     L     205     L     205      3   11   40     3    3    4    4    4   14   17   20   22   25   32   35   37   39   44   48   52   57   65   67 
LCS_GDT     A     206     A     206      5   11   40     3    4    5   11   12   13   17   21   26   29   32   35   37   40   48   53   55   59   65   67 
LCS_GDT     P     207     P     207      7   11   40     4    5    9   11   12   14   17   20   24   27   31   35   36   39   41   44   49   54   59   62 
LCS_GDT     V     208     V     208      8   11   40     4    6    9   11   12   14   17   20   22   25   29   32   35   37   40   43   46   50   58   63 
LCS_GDT     L     209     L     209      8   11   40     4    6    9   11   12   14   17   21   26   29   32   35   37   40   48   53   55   59   65   67 
LCS_GDT     F     210     F     210      8   11   40     4    6    9   11   12   14   17   21   26   29   32   35   37   39   44   51   55   59   65   67 
LCS_GDT     E     211     E     211      8   11   40     4    6    9   11   12   14   17   20   22   25   29   32   35   38   40   44   47   54   59   66 
LCS_GDT     H     212     H     212      8   11   40     4    6    9   11   12   14   17   21   26   29   32   35   37   40   48   53   55   59   65   67 
LCS_GDT     G     213     G     213      8   11   40     4    6    8   11   12   14   17   19   22   29   32   35   37   40   48   53   55   59   65   67 
LCS_GDT     L     214     L     214      8   11   40     4    6    9   11   12   14   17   21   26   29   32   35   40   44   48   53   55   59   65   67 
LCS_GDT     Q     215     Q     215      8   11   40     4    5    8   10   12   14   17   21   26   29   32   35   37   40   48   53   55   59   65   67 
LCS_GDT     E     216     E     216      5   11   40     3    4    5   10   10   10   13   19   22   27   29   34   41   44   48   53   55   59   65   67 
LCS_GDT     L     217     L     217      4    7   37     3    4    4    7    7   10   13   19   22   27   29   31   33   39   47   53   55   59   65   67 
LCS_GDT     S     218     S     218      5    9   35     3    4    6    7    9    9   12   15   17   20   22   24   28   34   36   40   45   48   59   65 
LCS_GDT     G     219     G     219      5    9   35     3    5    6    7    9    9   10   11   16   20   22   24   26   31   36   40   45   52   59   64 
LCS_GDT     F     220     F     220      5    9   35     3    5    6    7    9    9   13   16   19   21   25   29   32   46   49   52   53   56   61   65 
LCS_GDT     M     221     M     221      5   11   35     3    5   13   16   22   26   29   33   36   37   39   41   43   46   49   52   53   57   62   67 
LCS_GDT     V     222     V     222      5   13   35     3    5    6    7    9   14   16   20   36   37   39   41   43   46   49   52   53   57   61   67 
LCS_GDT     K     223     K     223     12   13   35    12   12   12   12   14   16   19   20   23   26   29   31   33   37   47   49   53   58   65   67 
LCS_GDT     D     224     D     224     12   13   35    12   12   12   12   14   16   19   20   23   26   29   31   33   36   42   45   54   59   65   67 
LCS_GDT     N     225     N     225     12   13   35    12   12   12   12   14   16   19   20   23   26   29   31   33   36   42   47   54   59   65   67 
LCS_GDT     A     226     A     226     12   13   35    12   12   12   12   14   16   19   20   23   26   29   31   33   35   42   47   54   59   65   67 
LCS_GDT     R     227     R     227     12   13   35    12   12   12   12   14   16   19   20   23   26   29   31   33   38   46   53   55   59   65   67 
LCS_GDT     A     228     A     228     12   13   35    12   12   12   12   14   16   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     F     229     F     229     12   13   35    12   12   12   12   14   16   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     R     230     R     230     12   13   35    12   12   12   12   14   16   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     I     231     I     231     12   13   35    12   12   12   12   13   16   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     V     232     V     232     12   13   35    12   12   12   12   14   16   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     A     233     A     233     12   13   35    12   12   12   12   14   16   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     G     234     G     234     12   13   35    12   12   12   12   13   16   19   20   23   27   28   33   41   44   48   53   55   59   65   67 
LCS_GDT     A     235     A     235      4   13   35     3    3    4    6   10   14   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     E     236     E     236      4    7   35     3    4    6    9   14   16   19   20   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     K     237     K     237      4    7   35     3    4    6    9   14   16   19   20   23   27   29   31   41   44   48   53   55   59   65   67 
LCS_GDT     V     238     V     238      4    8   35     0    3    6    7   12   14   19   20   23   27   29   31   33   39   42   50   55   59   65   67 
LCS_GDT     K     239     K     239      6    8   35     4    4    6    7   11   14   19   20   23   27   29   31   41   44   48   53   55   59   65   67 
LCS_GDT     I     240     I     240      6    8   35     4    5    6    7    7    8   10   16   22   26   29   32   41   44   48   53   55   59   65   67 
LCS_GDT     Y     241     Y     241      6    8   35     4    5    6    7    7   15   18   20   23   27   29   34   41   44   48   53   55   59   65   67 
LCS_GDT     S     242     S     242      6    8   35     4    5    6    7   12   16   19   20   23   24   28   30   33   37   42   45   49   57   61   65 
LCS_GDT     A     243     A     243      6    9   35     4    5    6    7    8    9   10   15   17   22   25   29   33   37   39   44   46   51   55   63 
LCS_GDT     G     244     G     244      7    9   35     4    7    7    7    8   12   16   19   22   27   29   31   33   37   42   47   54   59   65   67 
LCS_GDT     Q     245     Q     245      7    9   35     3    7    7    7   13   15   18   20   23   27   29   31   33   39   46   53   55   59   65   67 
LCS_GDT     K     246     K     246      7    9   35     4    7    7    8   10   12   17   19   23   27   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     V     247     V     247      7    9   35     4    7    7   10   10   12   17   19   23   37   38   40   43   46   49   53   55   59   65   67 
LCS_GDT     T     248     T     248      7    9   35     3    7    7    7    8   12   17   19   22   26   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     I     249     I     249      7    9   35     4    7    7    7    8   12   17   19   22   27   29   31   41   44   48   53   55   59   65   67 
LCS_GDT     K     250     K     250      7    9   35     4    7    7    7    8   12   17   19   22   26   29   33   41   44   48   53   55   59   65   67 
LCS_GDT     K     251     K     251      3    9   33     3    3    5    7    8    9   10   12   17   19   23   27   29   35   38   47   54   57   61   65 
LCS_AVERAGE  LCS_A:  12.82  (   5.48   10.22   22.76 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     12     15     20     25     27     31     33     36     37     39     41     43     46     49     53     55     59     65     67 
GDT PERCENT_CA   8.11   8.11  10.14  13.51  16.89  18.24  20.95  22.30  24.32  25.00  26.35  27.70  29.05  31.08  33.11  35.81  37.16  39.86  43.92  45.27
GDT RMS_LOCAL    0.27   0.27   0.96   1.41   1.69   1.82   2.14   2.33   2.63   2.72   3.00   3.27   3.46   3.81   4.29   5.91   6.00   6.28   6.75   6.88
GDT RMS_ALL_CA  25.44  25.44  24.04  19.75  19.73  19.70  19.72  19.76  19.82  19.82  19.72  19.81  19.90  19.96  19.68  24.65  24.66  24.80  24.75  24.82

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         41.835
LGA    I      98      I      98         45.865
LGA    F      99      F      99         47.722
LGA    S     100      S     100         53.937
LGA    D     101      D     101         57.464
LGA    A     102      A     102         55.169
LGA    N     110      N     110         39.892
LGA    D     111      D     111         36.150
LGA    P     112      P     112         31.009
LGA    F     113      F     113         26.259
LGA    I     114      I     114         29.345
LGA    M     115      M     115         29.086
LGA    S     116      S     116         22.882
LGA    Q     117      Q     117         21.344
LGA    N     118      N     118         21.835
LGA    E     119      E     119         18.186
LGA    V     120      V     120         12.845
LGA    K     121      K     121         12.941
LGA    G     122      G     122          8.078
LGA    K     123      K     123          3.213
LGA    K     124      K     124          1.656
LGA    V     125      V     125          1.948
LGA    G     126      G     126          1.541
LGA    V     127      V     127          2.580
LGA    V     128      V     128          3.026
LGA    G     129      G     129          3.766
LGA    H     130      H     130          1.080
LGA    F     131      F     131          1.530
LGA    P     132      P     132          1.887
LGA    H     133      H     133          2.426
LGA    L     134      L     134          2.252
LGA    E     135      E     135          2.900
LGA    S     136      S     136          2.006
LGA    L     137      L     137          0.962
LGA    L     138      L     138          1.597
LGA    E     139      E     139          0.910
LGA    P     140      P     140          1.832
LGA    I     141      I     141          1.347
LGA    C     142      C     142          1.364
LGA    D     143      D     143          3.005
LGA    L     144      L     144          1.474
LGA    S     145      S     145          2.290
LGA    I     146      I     146          2.443
LGA    L     147      L     147          2.242
LGA    E     148      E     148          2.775
LGA    W     149      W     149          1.127
LGA    S     150      S     150          5.565
LGA    P     151      P     151          9.293
LGA    E     152      E     152         15.696
LGA    E     153      E     153         18.966
LGA    G     154      G     154         19.704
LGA    D     155      D     155         18.172
LGA    Y     156      Y     156         15.244
LGA    P     157      P     157         16.393
LGA    L     158      L     158         14.171
LGA    P     159      P     159         15.788
LGA    A     160      A     160         12.963
LGA    S     161      S     161          7.442
LGA    E     162      E     162         10.845
LGA    F     163      F     163         11.799
LGA    I     164      I     164          7.078
LGA    L     165      L     165          3.770
LGA    P     166      P     166          6.235
LGA    E     167      E     167          3.813
LGA    C     168      C     168          2.325
LGA    D     169      D     169          6.397
LGA    Y     170      Y     170          9.746
LGA    V     171      V     171          7.132
LGA    Y     172      Y     172         10.330
LGA    I     173      I     173          7.304
LGA    T     174      T     174          9.606
LGA    C     175      C     175         10.048
LGA    A     176      A     176          7.584
LGA    S     177      S     177          5.669
LGA    V     178      V     178          5.683
LGA    V     179      V     179          3.792
LGA    D     180      D     180          1.005
LGA    K     181      K     181          1.631
LGA    T     182      T     182          6.947
LGA    L     183      L     183          9.043
LGA    P     184      P     184         10.871
LGA    R     185      R     185         13.306
LGA    L     186      L     186         16.138
LGA    L     187      L     187         18.497
LGA    E     188      E     188         20.409
LGA    L     189      L     189         23.580
LGA    S     190      S     190         25.788
LGA    R     191      R     191         27.606
LGA    N     192      N     192         30.527
LGA    A     193      A     193         30.799
LGA    R     194      R     194         27.645
LGA    R     195      R     195         22.384
LGA    I     196      I     196         16.851
LGA    T     197      T     197         12.124
LGA    L     198      L     198          7.063
LGA    V     199      V     199          7.266
LGA    G     200      G     200          7.213
LGA    P     201      P     201         10.372
LGA    G     202      G     202         11.369
LGA    T     203      T     203         10.671
LGA    P     204      P     204         13.623
LGA    L     205      L     205         11.492
LGA    A     206      A     206         13.511
LGA    P     207      P     207         19.275
LGA    V     208      V     208         19.493
LGA    L     209      L     209         14.181
LGA    F     210      F     210         19.998
LGA    E     211      E     211         24.585
LGA    H     212      H     212         19.923
LGA    G     213      G     213         22.021
LGA    L     214      L     214         17.459
LGA    Q     215      Q     215         19.715
LGA    E     216      E     216         16.302
LGA    L     217      L     217         16.516
LGA    S     218      S     218         18.640
LGA    G     219      G     219         13.587
LGA    F     220      F     220          9.581
LGA    M     221      M     221          7.016
LGA    V     222      V     222          8.941
LGA    K     223      K     223         13.033
LGA    D     224      D     224         16.337
LGA    N     225      N     225         17.740
LGA    A     226      A     226         22.373
LGA    R     227      R     227         23.361
LGA    A     228      A     228         21.581
LGA    F     229      F     229         24.741
LGA    R     230      R     230         28.692
LGA    I     231      I     231         28.082
LGA    V     232      V     232         27.275
LGA    A     233      A     233         31.982
LGA    G     234      G     234         34.577
LGA    A     235      A     235         38.075
LGA    E     236      E     236         34.284
LGA    K     237      K     237         34.208
LGA    V     238      V     238         29.091
LGA    K     239      K     239         28.159
LGA    I     240      I     240         26.292
LGA    Y     241      Y     241         20.504
LGA    S     242      S     242         24.315
LGA    A     243      A     243         26.414
LGA    G     244      G     244         21.240
LGA    Q     245      Q     245         15.181
LGA    K     246      K     246         12.245
LGA    V     247      V     247          9.646
LGA    T     248      T     248         12.009
LGA    I     249      I     249         13.134
LGA    K     250      K     250         18.758
LGA    K     251      K     251         20.756

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     33    2.33    19.932    17.876     1.356

LGA_LOCAL      RMSD =  2.333  Number of atoms =   33  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.758  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 17.572  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.166339 * X  +   0.329589 * Y  +   0.929356 * Z  +  15.916488
  Y_new =   0.164772 * X  +   0.919944 * Y  +  -0.355743 * Z  +  36.634956
  Z_new =  -0.972204 * X  +   0.212306 * Y  +   0.098715 * Z  +  60.213829 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.135566   -2.006027  [ DEG:    65.0631   -114.9369 ]
  Theta =   1.334469    1.807124  [ DEG:    76.4594    103.5406 ]
  Phi   =   0.780667   -2.360926  [ DEG:    44.7289   -135.2711 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS599_5-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS599_5-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   33   2.33  17.876    17.57
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS599_5-D2
PFRMAT TS                                                                       
TARGET T0321                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM     97  CA  VAL    97      25.577  46.841  50.476  1.00  0.00              
ATOM     98  CA  ILE    98      26.207  44.018  47.459  1.00  0.00              
ATOM     99  CA  PHE    99      28.772  42.255  47.453  1.00  0.00              
ATOM    100  CA  SER   100      29.682  41.422  43.688  1.00  0.00              
ATOM    101  CA  ASP   101      31.359  38.094  44.005  1.00  0.00              
ATOM    102  CA  ALA   102      32.845  38.314  47.526  1.00  0.00              
ATOM    103  CA  LYS   103      36.493  37.689  47.002  1.00  0.00              
ATOM    104  CA  ARG   104      38.765  40.593  47.968  1.00  0.00              
ATOM    105  CA  VAL   105      40.335  39.977  51.222  1.00  0.00              
ATOM    106  CA  GLU   106      41.222  43.535  52.400  1.00  0.00              
ATOM    107  CA  ASP   107      44.070  43.093  54.880  1.00  0.00              
ATOM    108  CA  ARG   108      43.003  45.247  57.768  1.00  0.00              
ATOM    109  CA  MET   109      39.503  43.869  58.120  1.00  0.00              
ATOM    110  CA  ASN   110      40.159  40.152  57.585  1.00  0.00              
ATOM    111  CA  ASP   111      41.474  39.038  60.941  1.00  0.00              
ATOM    112  CA  PRO   112      38.612  40.932  62.688  1.00  0.00              
ATOM    113  CA  PHE   113      35.840  39.416  60.526  1.00  0.00              
ATOM    114  CA  ILE   114      37.184  35.826  60.997  1.00  0.00              
ATOM    115  CA  MET   115      37.387  36.214  64.790  1.00  0.00              
ATOM    116  CA  SER   116      33.891  37.567  64.854  1.00  0.00              
ATOM    117  CA  GLN   117      32.511  34.698  62.777  1.00  0.00              
ATOM    118  CA  ASN   118      34.117  32.001  64.897  1.00  0.00              
ATOM    119  CA  GLU   119      32.773  33.338  68.244  1.00  0.00              
ATOM    120  CA  VAL   120      29.174  33.646  67.099  1.00  0.00              
ATOM    121  CA  LYS   121      28.205  30.230  65.762  1.00  0.00              
ATOM    122  CA  GLY   122      24.819  29.284  67.023  1.00  0.00              
ATOM    123  CA  LYS   123      23.238  32.872  68.144  1.00  0.00              
ATOM    124  CA  LYS   124      20.381  33.478  67.076  1.00  0.00              
ATOM    125  CA  VAL   125      19.899  37.053  66.428  1.00  0.00              
ATOM    126  CA  GLY   126      16.728  39.111  65.721  1.00  0.00              
ATOM    127  CA  VAL   127      17.119  42.291  63.797  1.00  0.00              
ATOM    128  CA  VAL   128      14.612  44.972  63.864  1.00  0.00              
ATOM    129  CA  GLY   129      15.624  48.417  62.754  1.00  0.00              
ATOM    130  CA  HIS   130      13.997  51.338  64.366  1.00  0.00              
ATOM    131  CA  PHE   131      14.389  52.692  67.740  1.00  0.00              
ATOM    132  CA  PRO   132      17.963  53.765  68.651  1.00  0.00              
ATOM    133  CA  HIS   133      17.739  52.427  72.165  1.00  0.00              
ATOM    134  CA  LEU   134      16.624  49.011  70.835  1.00  0.00              
ATOM    135  CA  GLU   135      19.284  48.722  68.181  1.00  0.00              
ATOM    136  CA  SER   136      22.002  49.658  70.645  1.00  0.00              
ATOM    137  CA  LEU   137      21.030  47.164  73.257  1.00  0.00              
ATOM    138  CA  LEU   138      20.666  44.484  70.672  1.00  0.00              
ATOM    139  CA  GLU   139      24.290  45.217  69.545  1.00  0.00              
ATOM    140  CA  PRO   140      25.697  45.017  73.066  1.00  0.00              
ATOM    141  CA  ILE   141      24.178  41.604  73.770  1.00  0.00              
ATOM    142  CA  CYS   142      24.789  39.805  70.374  1.00  0.00              
ATOM    143  CA  ASP   143      21.644  39.533  68.186  1.00  0.00              
ATOM    144  CA  LEU   144      22.097  41.591  64.782  1.00  0.00              
ATOM    145  CA  SER   145      18.784  43.222  63.150  1.00  0.00              
ATOM    146  CA  ILE   146      19.177  44.933  59.774  1.00  0.00              
ATOM    147  CA  LEU   147      16.353  47.164  59.077  1.00  0.00              
ATOM    148  CA  GLU   148      15.670  47.988  55.141  1.00  0.00              
ATOM    149  CA  TRP   149      12.987  50.421  54.136  1.00  0.00              
ATOM    150  CA  SER   150      12.173  49.158  50.797  1.00  0.00              
ATOM    151  CA  PRO   151      14.417  48.066  48.181  1.00  0.00              
ATOM    152  CA  GLU   152      13.227  44.678  47.092  1.00  0.00              
ATOM    153  CA  GLU   153       9.717  44.847  48.286  1.00  0.00              
ATOM    154  CA  GLY   154       9.398  41.274  50.146  1.00  0.00              
ATOM    155  CA  ASP   155       6.401  40.865  51.042  1.00  0.00              
ATOM    156  CA  TYR   156       6.569  38.067  54.032  1.00  0.00              
ATOM    157  CA  PRO   157       4.050  36.187  54.691  1.00  0.00              
ATOM    158  CA  LEU   158       3.461  35.692  58.593  1.00  0.00              
ATOM    159  CA  PRO   159       4.052  31.956  58.758  1.00  0.00              
ATOM    160  CA  ALA   160       7.378  32.147  56.955  1.00  0.00              
ATOM    161  CA  SER   161       8.569  35.175  59.038  1.00  0.00              
ATOM    162  CA  GLU   162       7.862  33.578  62.383  1.00  0.00              
ATOM    163  CA  PHE   163       9.594  30.364  61.610  1.00  0.00              
ATOM    164  CA  ILE   164      12.555  32.171  60.164  1.00  0.00              
ATOM    165  CA  LEU   165      12.886  34.526  63.045  1.00  0.00              
ATOM    166  CA  PRO   166      13.070  31.681  65.626  1.00  0.00              
ATOM    167  CA  GLU   167      15.798  29.746  63.867  1.00  0.00              
ATOM    168  CA  CYS   168      18.382  32.860  62.755  1.00  0.00              
ATOM    169  CA  ASP   169      20.932  33.997  63.831  1.00  0.00              
ATOM    170  CA  TYR   170      20.515  37.554  61.509  1.00  0.00              
ATOM    171  CA  VAL   171      17.216  38.810  61.187  1.00  0.00              
ATOM    172  CA  TYR   172      16.269  41.444  58.226  1.00  0.00              
ATOM    173  CA  ILE   173      13.089  43.729  58.620  1.00  0.00              
ATOM    174  CA  THR   174      11.901  44.911  55.951  1.00  0.00              
ATOM    175  CA  CYS   175       9.687  48.278  56.426  1.00  0.00              
ATOM    176  CA  ALA   176       6.890  48.404  54.089  1.00  0.00              
ATOM    177  CA  SER   177       6.109  44.662  54.282  1.00  0.00              
ATOM    178  CA  VAL   178       5.787  44.603  58.046  1.00  0.00              
ATOM    179  CA  VAL   179       3.764  47.752  58.284  1.00  0.00              
ATOM    180  CA  ASP   180       1.405  46.922  55.422  1.00  0.00              
ATOM    181  CA  LYS   181       0.484  43.466  56.638  1.00  0.00              
ATOM    182  CA  THR   182      -0.015  44.639  60.168  1.00  0.00              
ATOM    183  CA  LEU   183      -2.282  47.585  59.385  1.00  0.00              
ATOM    184  CA  PRO   184      -4.944  45.614  57.490  1.00  0.00              
ATOM    185  CA  ARG   185      -5.206  43.109  60.414  1.00  0.00              
ATOM    186  CA  LEU   186      -5.527  46.078  62.788  1.00  0.00              
ATOM    187  CA  LEU   187      -8.180  47.707  60.624  1.00  0.00              
ATOM    188  CA  GLU   188     -10.215  44.456  60.612  1.00  0.00              
ATOM    189  CA  LEU   189     -10.006  44.254  64.355  1.00  0.00              
ATOM    190  CA  SER   190     -11.099  47.619  64.852  1.00  0.00              
ATOM    191  CA  ARG   191     -14.172  47.009  62.838  1.00  0.00              
ATOM    192  CA  ASN   192     -15.566  43.761  64.148  1.00  0.00              
ATOM    193  CA  ALA   193     -15.570  44.555  67.870  1.00  0.00              
ATOM    194  CA  ARG   194     -13.475  41.585  68.986  1.00  0.00              
ATOM    195  CA  ARG   195     -10.786  42.416  71.340  1.00  0.00              
ATOM    196  CA  ILE   196      -7.149  42.728  69.804  1.00  0.00              
ATOM    197  CA  THR   197      -4.211  42.135  72.478  1.00  0.00              
ATOM    198  CA  LEU   198      -0.834  43.505  71.359  1.00  0.00              
ATOM    199  CA  VAL   199       2.021  41.989  73.391  1.00  0.00              
ATOM    200  CA  GLY   200       5.624  43.056  72.184  1.00  0.00              
ATOM    201  CA  PRO   201       9.037  44.112  71.913  1.00  0.00              
ATOM    202  CA  GLY   202       9.334  47.527  73.594  1.00  0.00              
ATOM    203  CA  THR   203      10.527  49.916  71.011  1.00  0.00              
ATOM    204  CA  PRO   204      10.351  48.182  67.626  1.00  0.00              
ATOM    205  CA  LEU   205       6.754  46.850  67.632  1.00  0.00              
ATOM    206  CA  ALA   206       5.041  49.871  69.175  1.00  0.00              
ATOM    207  CA  PRO   207       6.570  52.548  67.085  1.00  0.00              
ATOM    208  CA  VAL   208       5.732  50.651  63.872  1.00  0.00              
ATOM    209  CA  LEU   209       2.150  50.050  64.903  1.00  0.00              
ATOM    210  CA  PHE   210       1.680  53.690  65.843  1.00  0.00              
ATOM    211  CA  GLU   211       3.192  54.972  62.515  1.00  0.00              
ATOM    212  CA  HIS   212       0.835  52.763  60.608  1.00  0.00              
ATOM    213  CA  GLY   213      -2.091  54.421  62.391  1.00  0.00              
ATOM    214  CA  LEU   214      -3.293  51.446  64.393  1.00  0.00              
ATOM    215  CA  GLN   215      -4.666  52.104  67.844  1.00  0.00              
ATOM    216  CA  GLU   216      -6.989  48.972  68.005  1.00  0.00              
ATOM    217  CA  LEU   217     -10.284  50.734  67.885  1.00  0.00              
ATOM    218  CA  SER   218     -13.133  48.723  69.347  1.00  0.00              
ATOM    219  CA  GLY   219     -11.030  47.398  72.055  1.00  0.00              
ATOM    220  CA  PHE   220      -7.210  47.406  72.023  1.00  0.00              
ATOM    221  CA  MET   221      -5.279  46.511  74.625  1.00  0.00              
ATOM    222  CA  VAL   222      -1.615  46.998  75.144  1.00  0.00              
ATOM    223  CA  LYS   223       0.385  45.098  77.560  1.00  0.00              
ATOM    224  CA  ASP   224       3.358  46.439  79.150  1.00  0.00              
ATOM    225  CA  ASN   225       5.817  48.277  76.942  1.00  0.00              
ATOM    226  CA  ALA   226       8.236  48.709  79.811  1.00  0.00              
ATOM    227  CA  ARG   227       8.223  45.061  80.859  1.00  0.00              
ATOM    228  CA  ALA   228       8.932  44.077  77.278  1.00  0.00              
ATOM    229  CA  PHE   229      11.789  46.491  76.997  1.00  0.00              
ATOM    230  CA  ARG   230      13.411  45.136  80.233  1.00  0.00              
ATOM    231  CA  ILE   231      12.942  41.545  79.099  1.00  0.00              
ATOM    232  CA  VAL   232      14.508  42.261  75.613  1.00  0.00              
ATOM    233  CA  ALA   233      17.476  43.997  77.229  1.00  0.00              
ATOM    234  CA  GLY   234      18.143  41.195  79.558  1.00  0.00              
ATOM    235  CA  ALA   235      18.169  38.225  77.181  1.00  0.00              
ATOM    236  CA  GLU   236      14.429  37.516  76.896  1.00  0.00              
ATOM    237  CA  LYS   237      14.058  35.717  73.612  1.00  0.00              
ATOM    238  CA  VAL   238      12.202  37.148  70.653  1.00  0.00              
ATOM    239  CA  LYS   239      10.092  33.937  70.155  1.00  0.00              
ATOM    240  CA  ILE   240       8.943  34.231  73.798  1.00  0.00              
ATOM    241  CA  TYR   241       7.800  37.775  73.859  1.00  0.00              
ATOM    242  CA  SER   242       5.570  37.694  70.802  1.00  0.00              
ATOM    243  CA  ALA   243       3.770  34.577  72.063  1.00  0.00              
ATOM    244  CA  GLY   244       3.052  35.959  75.494  1.00  0.00              
ATOM    245  CA  GLN   245       1.616  39.423  74.486  1.00  0.00              
ATOM    246  CA  LYS   246      -1.830  40.284  76.295  1.00  0.00              
ATOM    247  CA  VAL   247      -4.390  42.088  74.305  1.00  0.00              
ATOM    248  CA  THR   248      -8.226  42.646  75.911  1.00  0.00              
ATOM    249  CA  ILE   249     -10.644  43.347  73.278  1.00  0.00              
ATOM    250  CA  LYS   250     -13.869  44.778  73.965  1.00  0.00              
ATOM    251  CA  LYS   251     -16.895  43.765  76.670  1.00  0.00              
TER                                                                             
END
