
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  101 (  101),  selected  101 , name T0323TS393_4-D1
# Molecule2: number of CA atoms  101 (  777),  selected  101 , name T0323_D1.pdb
# PARAMETERS: T0323TS393_4-D1.T0323_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35       183 - 217         4.84    15.24
  LCS_AVERAGE:     30.96

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19         8 - 26          1.96    17.86
  LONGEST_CONTINUOUS_SEGMENT:    19         9 - 27          1.95    17.50
  LONGEST_CONTINUOUS_SEGMENT:    19        10 - 28          1.84    17.26
  LONGEST_CONTINUOUS_SEGMENT:    19        11 - 29          1.92    17.05
  LCS_AVERAGE:     13.29

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        14 - 28          1.00    17.26
  LCS_AVERAGE:      9.89

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  101
LCS_GDT     M       1     M       1      4    5   32     3    4    4    4    5    5    8   10   13   16   17   23   24   24   25   29   33   36   37   38 
LCS_GDT     R       2     R       2      4    5   32     3    4   10   13   15   16   16   19   20   20   23   23   26   29   32   34   36   37   39   41 
LCS_GDT     Y       3     Y       3      4    6   32     3    4    8   15   17   19   19   23   25   26   27   30   32   33   34   35   36   37   39   41 
LCS_GDT     F       4     F       4      4   13   32     3    4    4    5    7   12   18   20   25   26   27   28   30   32   34   35   36   37   39   41 
LCS_GDT     S       5     S       5      4   13   32     3    3    4    5   12   13   14   19   22   25   26   28   30   31   31   34   35   37   39   39 
LCS_GDT     T       6     T       6     11   13   32     4    5   11   11   12   14   18   19   22   25   26   28   30   31   33   35   36   37   39   41 
LCS_GDT     D       7     D       7     11   16   32     4    5   11   11   12   14   18   19   22   25   26   28   30   31   34   35   36   37   39   44 
LCS_GDT     S       8     S       8     11   19   32     9    9   11   13   16   21   21   24   25   26   27   29   32   33   34   35   36   39   49   53 
LCS_GDT     P       9     P       9     11   19   32     9    9   11   13   16   21   23   24   25   26   27   30   32   33   34   35   39   43   49   53 
LCS_GDT     E      10     E      10     11   19   32     9    9   11   13   16   21   23   24   25   26   27   30   32   33   34   35   39   44   49   53 
LCS_GDT     V      11     V      11     11   19   32     9    9   11   14   18   21   23   24   25   27   28   30   32   33   34   36   42   44   49   53 
LCS_GDT     K      12     K      12     11   19   32     9    9   11   16   20   21   23   24   25   27   28   30   32   33   39   40   43   45   49   53 
LCS_GDT     T      13     T      13     11   19   32     9    9   11   16   20   21   23   24   25   27   28   30   32   33   39   40   42   46   49   53 
LCS_GDT     I      14     I      14     15   19   32     9    9   13   16   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     V      15     V      15     15   19   32     9    9   14   15   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     A      16     A      16     15   19   32     9   10   14   16   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     Q      17     Q      17     15   19   32     5   10   14   16   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     D      18     D      18     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     S      19     S      19     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     R      20     R      20     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   32   35   39   41   43   46   49   53 
LCS_GDT     L      21     L      21     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   32   36   39   41   43   46   49   53 
LCS_GDT     F      22     F      22     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   32   33   38   41   43   46   49   53 
LCS_GDT     Q      23     Q      23     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   32   33   34   37   43   44   49   53 
LCS_GDT     F      24     F      24     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   32   33   34   35   43   44   49   53 
LCS_GDT     I      25     I      25     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   32   33   34   35   43   44   49   53 
LCS_GDT     E      26     E      26     15   19   32     9   11   14   16   20   21   23   24   25   27   28   30   32   33   34   35   43   44   49   53 
LCS_GDT     I      27     I      27     15   19   32     4   11   14   15   20   21   23   24   25   27   28   30   32   33   34   35   36   43   49   53 
LCS_GDT     A      28     A      28     15   19   32     3   11   14   15   20   21   23   24   25   27   28   30   32   33   34   35   36   40   49   53 
LCS_GDT     G      29     G      29     12   19   32     3    4    5   10   14   18   20   23   24   27   28   30   32   33   34   35   36   39   44   48 
LCS_GDT     E      30     E      30      5   18   32     3    4    6   10   14   16   19   23   24   27   28   30   32   33   34   35   36   39   44   52 
LCS_GDT     V      31     V      31      5   18   32     3    6   11   13   15   19   20   23   24   27   28   30   32   33   34   35   39   44   49   53 
LCS_GDT     Q      32     Q      32      4   17   32     3    3    5    9   14   16   19   23   24   27   28   29   32   33   34   35   42   44   49   53 
LCS_GDT     L      33     L      33      5   17   32     1    4    5    6   13   16   19   23   24   27   28   30   32   33   34   36   42   44   49   53 
LCS_GDT     L     150     L     150      5    7   30     4    5    5    7   13   17   22   24   26   28   29   31   33   36   39   41   43   46   48   51 
LCS_GDT     D     151     D     151      5    7   30     4    5    5    9   12   17   21   24   26   28   29   31   32   35   39   41   43   46   48   51 
LCS_GDT     V     152     V     152      5    7   30     4    5    5    7    7    9   12   17   19   22   27   30   33   36   39   41   43   46   49   53 
LCS_GDT     L     153     L     153      5    7   30     4    5    5    9   13   16   19   21   24   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     S     154     S     154      5    7   30     4    4    5    6    9   10   14   15   24   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     V     155     V     155      5    7   30     4    4   10   16   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     G     156     G     156      4   14   30     3    5    9   16   20   21   23   24   25   26   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     D     157     D     157     13   14   30    11   12   12   15   20   21   23   24   25   27   28   30   33   36   39   41   43   46   49   53 
LCS_GDT     V     158     V     158     13   14   29    11   12   12   13   13   14   15   21   24   25   27   30   33   36   39   41   43   46   49   53 
LCS_GDT     G     159     G     159     13   14   22    11   12   12   13   13   14   15   16   17   17   18   21   22   24   27   35   42   46   49   53 
LCS_GDT     L     160     L     160     13   14   22    11   12   12   13   13   14   15   16   17   17   18   21   23   29   31   33   40   46   49   53 
LCS_GDT     Q     161     Q     161     13   14   22    11   12   12   13   13   14   15   16   17   21   26   28   33   36   39   41   43   46   49   53 
LCS_GDT     R     162     R     162     13   14   22    11   12   12   13   13   14   15   16   17   17   18   21   22   26   32   41   43   46   49   53 
LCS_GDT     G     163     G     163     13   14   22    11   12   12   13   13   14   15   16   17   17   18   21   22   24   25   29   32   35   37   39 
LCS_GDT     A     164     A     164     13   14   22    11   12   12   13   13   14   15   16   17   17   19   23   26   28   30   32   33   36   41   43 
LCS_GDT     K     165     K     165     13   14   22    11   12   12   13   13   14   15   16   17   17   18   21   22   28   31   34   36   39   41   44 
LCS_GDT     W     166     W     166     13   14   22    11   12   12   13   13   14   15   16   17   17   18   21   25   27   29   32   33   36   37   40 
LCS_GDT     L     167     L     167     13   14   27    11   12   12   13   13   14   15   16   17   19   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     Y     168     Y     168     13   14   27     4   12   12   13   13   14   15   16   19   20   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     G     169     G     169     13   14   27     3    4    4   13   13   14   15   16   17   17   19   23   26   28   30   32   33   36   37   40 
LCS_GDT     N     170     N     170      4    5   27     3    4    4    5    5    9   11   16   16   17   19   23   26   28   30   32   33   36   37   40 
LCS_GDT     G     171     G     171      4    6   27     3    4    4    6    9   11   12   15   19   20   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     E     172     E     172      5    6   27     3    4    5    6    9   11   13   16   19   20   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     G     173     G     173      5    6   27     3    4    5    6    9   11   13   16   19   20   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     D     174     D     174      5    6   27     3    4    5    6    9   11   13   16   19   20   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     G     175     G     175      5   14   27     3    4    7    9   13   13   14   15   19   20   23   23   26   28   30   31   33   35   37   39 
LCS_GDT     K     176     K     176     12   14   27     6    8   12   12   13   13   14   15   17   18   21   23   25   28   30   31   33   35   37   39 
LCS_GDT     K     177     K     177     12   14   27     6    8   12   12   13   13   14   15   19   20   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     L     178     L     178     12   14   27     6    8   12   12   13   13   14   15   17   19   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     L     179     L     179     12   14   27     6    8   12   12   13   13   14   15   19   20   23   23   26   28   30   32   33   36   37   40 
LCS_GDT     I     180     I     180     12   14   27     6    8   12   12   13   13   14   16   19   20   23   23   26   28   31   34   35   39   41   43 
LCS_GDT     Y     181     Y     181     12   14   27     6    8   12   12   13   13   15   16   19   20   23   23   26   28   31   34   36   39   41   43 
LCS_GDT     H     182     H     182     12   14   27     4    8   12   12   13   13   15   16   19   20   23   23   26   29   33   36   37   39   41   43 
LCS_GDT     G     183     G     183     12   14   35     4    8   12   12   13   14   14   16   19   20   23   24   30   34   36   36   38   39   41   43 
LCS_GDT     K     184     K     184     12   14   35     3    8   12   12   13   13   14   16   19   22   27   30   31   34   36   37   38   39   41   43 
LCS_GDT     A     185     A     185     12   14   35     3    6   12   12   13   13   14   17   25   28   29   31   32   34   36   37   38   39   41   43 
LCS_GDT     W     186     W     186     12   14   35     3    7   12   12   13   13   16   24   26   28   29   31   32   34   36   37   38   39   41   43 
LCS_GDT     A     187     A     187     12   15   35     3    5   12   12   13   19   22   24   26   28   29   31   32   34   36   37   38   39   41   43 
LCS_GDT     P     188     P     188      5   15   35     3    4    5    5    9   13   22   24   26   28   29   31   32   34   36   37   38   39   41   43 
LCS_GDT     Y     189     Y     189     13   15   35     4   13   13   14   15   20   20   23   26   28   28   31   32   32   34   37   38   39   39   42 
LCS_GDT     E     190     E     190     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   32   34   36   37   38   39   41   43 
LCS_GDT     T     191     T     191     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   32   36   39   41   43   46   48   51 
LCS_GDT     V     192     V     192     13   15   35    12   13   13   14   17   20   22   24   26   28   29   31   32   34   36   41   43   46   48   51 
LCS_GDT     A     193     A     193     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   32   34   36   37   38   46   48   51 
LCS_GDT     C     194     C     194     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   33   36   39   41   43   46   48   51 
LCS_GDT     L     195     L     195     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     Y     196     Y     196     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     L     197     L     197     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     W     198     W     198     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   33   35   39   41   43   46   49   53 
LCS_GDT     K     199     K     199     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     A     200     A     200     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     A     201     A     201     13   15   35    12   13   13   15   17   20   22   24   26   28   29   31   32   32   36   37   38   44   48   52 
LCS_GDT     G     202     G     202      4   14   35     3    5    6    7   10   17   19   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     T     203     T     203      6    7   35     6    6    6    7    7    8   10   16   19   24   27   30   33   36   39   41   43   46   49   53 
LCS_GDT     F     204     F     204      6    7   35     6    6    6    7    7    8    8   12   15   22   25   30   33   36   39   41   43   46   49   53 
LCS_GDT     A     205     A     205      6    7   35     6    6    6    7    7   11   16   21   25   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     E     206     E     206      6    7   35     6    6    6    7    8   10   18   21   25   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     E     207     E     207      6    7   35     6    6    6    7    7    7    8   11   12   16   21   29   33   36   39   41   43   46   49   53 
LCS_GDT     Y     208     Y     208      6    7   35     6    6    6    7    7    8   11   16   20   26   29   30   33   36   39   41   43   46   49   53 
LCS_GDT     R     209     R     209      3    9   35     3    3    5    7    9   17   21   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     S     210     S     210      7    9   35     6    7    7    8    8    9   11   23   26   28   28   31   33   36   39   41   43   46   49   53 
LCS_GDT     L     211     L     211      7    9   35     6    7    9   14   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     E     212     E     212      7    9   35     6    7    9   15   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     E     213     E     213      7    9   35     6    7    7    8   17   20   22   24   26   28   29   31   33   36   39   41   43   46   49   53 
LCS_GDT     L     214     L     214      7    9   35     6    7    7    8   17   20   22   24   26   28   29   31   33   36   39   41   43   46   48   52 
LCS_GDT     L     215     L     215      7    9   35     6    7   10   15   17   20   22   24   26   28   29   31   32   34   39   40   42   45   48   50 
LCS_GDT     H     216     H     216      7    9   35     3    7    9   15   17   20   22   24   26   28   29   31   32   35   39   40   43   46   48   50 
LCS_GDT     H     217     H     217      4    9   35     3    5   12   15   17   20   22   24   26   28   29   31   32   34   36   37   40   44   47   50 
LCS_AVERAGE  LCS_A:  18.05  (   9.89   13.29   30.96 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     13     14     16     20     21     23     24     26     28     29     31     33     36     39     41     43     46     49     53 
GDT PERCENT_CA  11.88  12.87  13.86  15.84  19.80  20.79  22.77  23.76  25.74  27.72  28.71  30.69  32.67  35.64  38.61  40.59  42.57  45.54  48.51  52.48
GDT RMS_LOCAL    0.34   0.47   0.84   1.56   1.72   1.83   2.12   2.26   2.65   2.93   3.55   3.57   4.53   4.96   5.17   5.34   5.74   5.92   6.97   7.20
GDT RMS_ALL_CA  19.77  19.70  17.37  17.21  17.04  17.12  17.33  17.45  17.37  17.16  15.76  16.24  16.26  15.97  16.06  16.05  15.51  15.91  15.61  15.44

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         16.158
LGA    R       2      R       2         12.277
LGA    Y       3      Y       3          5.669
LGA    F       4      F       4          5.867
LGA    S       5      S       5          7.712
LGA    T       6      T       6          7.067
LGA    D       7      D       7          6.662
LGA    S       8      S       8          3.707
LGA    P       9      P       9          2.956
LGA    E      10      E      10          2.380
LGA    V      11      V      11          1.572
LGA    K      12      K      12          1.097
LGA    T      13      T      13          1.496
LGA    I      14      I      14          1.903
LGA    V      15      V      15          2.885
LGA    A      16      A      16          2.207
LGA    Q      17      Q      17          1.686
LGA    D      18      D      18          1.950
LGA    S      19      S      19          1.295
LGA    R      20      R      20          1.101
LGA    L      21      L      21          0.945
LGA    F      22      F      22          1.091
LGA    Q      23      Q      23          1.094
LGA    F      24      F      24          1.546
LGA    I      25      I      25          2.093
LGA    E      26      E      26          2.919
LGA    I      27      I      27          3.875
LGA    A      28      A      28          3.843
LGA    G      29      G      29          7.033
LGA    E      30      E      30          8.910
LGA    V      31      V      31          7.944
LGA    Q      32      Q      32         11.997
LGA    L      33      L      33         11.436
LGA    L     150      L     150         20.456
LGA    D     151      D     151         21.929
LGA    V     152      V     152         15.776
LGA    L     153      L     153          9.667
LGA    S     154      S     154          7.892
LGA    V     155      V     155          2.649
LGA    G     156      G     156          2.151
LGA    D     157      D     157          3.366
LGA    V     158      V     158          5.142
LGA    G     159      G     159         10.046
LGA    L     160      L     160         10.326
LGA    Q     161      Q     161          8.480
LGA    R     162      R     162         12.605
LGA    G     163      G     163         17.940
LGA    A     164      A     164         17.982
LGA    K     165      K     165         16.939
LGA    W     166      W     166         23.011
LGA    L     167      L     167         27.101
LGA    Y     168      Y     168         25.992
LGA    G     169      G     169         23.682
LGA    N     170      N     170         24.099
LGA    G     171      G     171         24.193
LGA    E     172      E     172         26.472
LGA    G     173      G     173         28.095
LGA    D     174      D     174         26.880
LGA    G     175      G     175         25.008
LGA    K     176      K     176         25.161
LGA    K     177      K     177         27.167
LGA    L     178      L     178         25.636
LGA    L     179      L     179         23.855
LGA    I     180      I     180         25.195
LGA    Y     181      Y     181         25.194
LGA    H     182      H     182         24.171
LGA    G     183      G     183         23.901
LGA    K     184      K     184         25.097
LGA    A     185      A     185         23.696
LGA    W     186      W     186         24.154
LGA    A     187      A     187         26.029
LGA    P     188      P     188         23.410
LGA    Y     189      Y     189         21.554
LGA    E     190      E     190         20.646
LGA    T     191      T     191         18.395
LGA    V     192      V     192         16.582
LGA    A     193      A     193         16.573
LGA    C     194      C     194         16.361
LGA    L     195      L     195         15.282
LGA    Y     196      Y     196         14.812
LGA    L     197      L     197         14.976
LGA    W     198      W     198         16.755
LGA    K     199      K     199         16.990
LGA    A     200      A     200         16.998
LGA    A     201      A     201         18.769
LGA    G     202      G     202         21.433
LGA    T     203      T     203         21.926
LGA    F     204      F     204         21.551
LGA    A     205      A     205         22.003
LGA    E     206      E     206         23.352
LGA    E     207      E     207         22.163
LGA    Y     208      Y     208         22.359
LGA    R     209      R     209         20.484
LGA    S     210      S     210         16.298
LGA    L     211      L     211         18.197
LGA    E     212      E     212         21.395
LGA    E     213      E     213         23.873
LGA    L     214      L     214         24.688
LGA    L     215      L     215         27.611
LGA    H     216      H     216         31.873
LGA    H     217      H     217         32.596

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  101  101    4.0     24    2.26    23.267    20.954     1.017

LGA_LOCAL      RMSD =  2.261  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.608  Number of atoms =  101 
Std_ALL_ATOMS  RMSD = 12.140  (standard rmsd on all 101 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.779308 * X  +   0.229434 * Y  +  -0.583129 * Z  +  17.077339
  Y_new =  -0.564558 * X  +  -0.660898 * Y  +   0.494457 * Z  +  42.928394
  Z_new =  -0.271944 * X  +   0.714545 * Y  +   0.644572 * Z  +  11.704695 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.836837   -2.304756  [ DEG:    47.9472   -132.0528 ]
  Theta =   0.275412    2.866180  [ DEG:    15.7800    164.2200 ]
  Phi   =  -2.514654    0.626938  [ DEG:  -144.0791     35.9209 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0323TS393_4-D1                               
REMARK     2: T0323_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0323TS393_4-D1.T0323_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  101  101   4.0   24   2.26  20.954    12.14
REMARK  ---------------------------------------------------------- 
MOLECULE T0323TS393_4-D1
PFRMAT TS
TARGET T0323
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      26.498  14.894  12.630  1.00 25.00           C
ATOM      2  CA  ARG     2      28.363  16.863   9.938  1.00 25.00           C
ATOM      3  CA  TYR     3      27.390  20.221   8.484  1.00 25.00           C
ATOM      4  CA  PHE     4      30.029  22.650   7.307  1.00 25.00           C
ATOM      5  CA  SER     5      33.775  21.997   7.829  1.00 25.00           C
ATOM      6  CA  THR     6      33.556  24.408  10.834  1.00 25.00           C
ATOM      7  CA  ASP     7      36.643  26.514   9.938  1.00 25.00           C
ATOM      8  CA  SER     8      34.622  29.761  10.199  1.00 25.00           C
ATOM      9  CA  PRO     9      36.437  32.824  11.611  1.00 25.00           C
ATOM     10  CA  GLU    10      33.082  34.580  12.182  1.00 25.00           C
ATOM     11  CA  VAL    11      31.735  31.476  13.976  1.00 25.00           C
ATOM     12  CA  LYS    12      34.861  31.366  16.186  1.00 25.00           C
ATOM     13  CA  THR    13      34.425  35.076  17.029  1.00 25.00           C
ATOM     14  CA  ILE    14      30.754  34.466  17.930  1.00 25.00           C
ATOM     15  CA  VAL    15      31.768  31.535  20.178  1.00 25.00           C
ATOM     16  CA  ALA    16      34.390  33.732  21.900  1.00 25.00           C
ATOM     17  CA  GLN    17      33.248  37.332  21.680  1.00 25.00           C
ATOM     18  CA  ASP    18      29.486  36.932  22.130  1.00 25.00           C
ATOM     19  CA  SER    19      29.810  34.656  25.191  1.00 25.00           C
ATOM     20  CA  ARG    20      26.068  34.926  25.959  1.00 25.00           C
ATOM     21  CA  LEU    21      25.231  33.519  22.497  1.00 25.00           C
ATOM     22  CA  PHE    22      27.655  30.609  23.067  1.00 25.00           C
ATOM     23  CA  GLN    23      26.041  29.898  26.466  1.00 25.00           C
ATOM     24  CA  PHE    24      22.569  29.926  24.851  1.00 25.00           C
ATOM     25  CA  ILE    25      23.780  27.498  22.148  1.00 25.00           C
ATOM     26  CA  GLU    26      25.223  25.185  24.838  1.00 25.00           C
ATOM     27  CA  ILE    27      21.901  25.287  26.742  1.00 25.00           C
ATOM     28  CA  ALA    28      20.099  23.951  23.677  1.00 25.00           C
ATOM     29  CA  GLY    29      18.837  20.794  21.890  1.00 25.00           C
ATOM     30  CA  GLU    30      18.953  18.680  18.713  1.00 25.00           C
ATOM     31  CA  VAL    31      17.990  21.905  16.948  1.00 25.00           C
ATOM     32  CA  GLN    32      14.236  22.010  16.865  1.00 25.00           C
ATOM     33  CA  LEU    33      14.718  24.470  14.053  1.00 25.00           C
ATOM    150  CA  LEU   150      10.115  31.123  17.115  1.00 25.00           C
ATOM    151  CA  ASP   151      10.540  33.369  20.164  1.00 25.00           C
ATOM    152  CA  VAL   152      13.380  35.323  18.599  1.00 25.00           C
ATOM    153  CA  LEU   153      14.647  38.429  16.835  1.00 25.00           C
ATOM    154  CA  SER   154      16.369  41.304  18.608  1.00 25.00           C
ATOM    155  CA  VAL   155      16.510  44.268  16.264  1.00 25.00           C
ATOM    156  CA  GLY   156      13.654  43.870  13.743  1.00 25.00           C
ATOM    157  CA  ASP   157      11.374  42.511  16.503  1.00 25.00           C
ATOM    158  CA  VAL   158      12.278  45.479  18.747  1.00 25.00           C
ATOM    159  CA  GLY   159      11.501  47.907  15.889  1.00 25.00           C
ATOM    160  CA  LEU   160       8.123  46.194  15.319  1.00 25.00           C
ATOM    161  CA  GLN   161       7.331  46.461  19.056  1.00 25.00           C
ATOM    162  CA  ARG   162       8.240  50.181  19.010  1.00 25.00           C
ATOM    163  CA  GLY   163       5.974  50.721  15.970  1.00 25.00           C
ATOM    164  CA  ALA   164       3.109  48.913  17.754  1.00 25.00           C
ATOM    165  CA  LYS   165       3.626  51.099  20.855  1.00 25.00           C
ATOM    166  CA  TRP   166       3.569  54.247  18.676  1.00 25.00           C
ATOM    167  CA  LEU   167       0.327  53.067  17.013  1.00 25.00           C
ATOM    168  CA  TYR   168      -1.501  50.554  19.221  1.00 25.00           C
ATOM    169  CA  GLY   169      -3.028  50.009  22.633  1.00 25.00           C
ATOM    170  CA  ASN   170      -4.065  46.556  21.275  1.00 25.00           C
ATOM    171  CA  GLY   171      -7.844  46.657  20.987  1.00 25.00           C
ATOM    172  CA  GLU   172     -10.923  46.471  18.698  1.00 25.00           C
ATOM    173  CA  GLY   173     -11.450  43.026  17.075  1.00 25.00           C
ATOM    174  CA  ASP   174      -9.948  40.302  14.941  1.00 25.00           C
ATOM    175  CA  GLY   175      -7.684  40.867  11.904  1.00 25.00           C
ATOM    176  CA  LYS   176      -5.848  39.374   8.967  1.00 25.00           C
ATOM    177  CA  LYS   177      -2.431  38.200   7.695  1.00 25.00           C
ATOM    178  CA  LEU   178      -0.955  41.665   8.388  1.00 25.00           C
ATOM    179  CA  LEU   179      -2.414  41.605  11.928  1.00 25.00           C
ATOM    180  CA  ILE   180      -0.914  38.131  12.515  1.00 25.00           C
ATOM    181  CA  TYR   181       2.494  39.367  11.281  1.00 25.00           C
ATOM    182  CA  HIS   182       2.280  42.382  13.632  1.00 25.00           C
ATOM    183  CA  GLY   183       1.416  40.069  16.560  1.00 25.00           C
ATOM    184  CA  LYS   184       4.399  37.826  15.701  1.00 25.00           C
ATOM    185  CA  ALA   185       6.697  40.888  15.581  1.00 25.00           C
ATOM    186  CA  TRP   186       5.385  42.037  18.991  1.00 25.00           C
ATOM    187  CA  ALA   187       6.013  38.547  20.436  1.00 25.00           C
ATOM    188  CA  PRO   188       9.576  38.580  19.034  1.00 25.00           C
ATOM    189  CA  TYR   189      10.181  42.028  20.585  1.00 25.00           C
ATOM    190  CA  GLU   190       8.877  40.767  23.957  1.00 25.00           C
ATOM    191  CA  THR   191      11.195  37.726  23.745  1.00 25.00           C
ATOM    192  CA  VAL   192      14.164  40.013  22.955  1.00 25.00           C
ATOM    193  CA  ALA   193      13.284  42.230  25.952  1.00 25.00           C
ATOM    194  CA  CYS   194      13.091  39.142  28.209  1.00 25.00           C
ATOM    195  CA  LEU   195      16.507  37.968  26.938  1.00 25.00           C
ATOM    196  CA  TYR   196      17.984  41.433  27.632  1.00 25.00           C
ATOM    197  CA  LEU   197      16.525  41.373  31.171  1.00 25.00           C
ATOM    198  CA  TRP   198      18.024  37.899  31.758  1.00 25.00           C
ATOM    199  CA  LYS   199      21.432  39.135  30.524  1.00 25.00           C
ATOM    200  CA  ALA   200      21.219  42.150  32.875  1.00 25.00           C
ATOM    201  CA  ALA   201      20.355  39.837  35.802  1.00 25.00           C
ATOM    202  CA  GLY   202      16.759  40.940  36.246  1.00 25.00           C
ATOM    203  CA  THR   203      13.319  42.427  35.503  1.00 25.00           C
ATOM    204  CA  PHE   204      13.007  46.174  34.743  1.00 25.00           C
ATOM    205  CA  ALA   205      15.079  48.334  37.132  1.00 25.00           C
ATOM    206  CA  GLU   206      18.001  45.874  36.861  1.00 25.00           C
ATOM    207  CA  GLU   207      17.761  45.970  33.041  1.00 25.00           C
ATOM    208  CA  TYR   208      17.768  49.799  33.112  1.00 25.00           C
ATOM    209  CA  ARG   209      20.852  49.775  35.382  1.00 25.00           C
ATOM    210  CA  SER   210      22.621  47.357  32.996  1.00 25.00           C
ATOM    211  CA  LEU   211      21.769  49.622  30.029  1.00 25.00           C
ATOM    212  CA  GLU   212      23.144  52.657  31.920  1.00 25.00           C
ATOM    213  CA  GLU   213      26.364  50.738  32.704  1.00 25.00           C
ATOM    214  CA  LEU   214      26.717  49.772  29.016  1.00 25.00           C
ATOM    215  CA  LEU   215      26.221  53.428  27.986  1.00 25.00           C
ATOM    216  CA  HIS   216      28.886  54.527  30.507  1.00 25.00           C
ATOM    217  CA  HIS   217      31.606  51.948  29.717  1.00 25.00           C
TER
END
