
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  116 (  116),  selected  116 , name T0323TS168_1-D2
# Molecule2: number of CA atoms  116 (  868),  selected  116 , name T0323_D2.pdb
# PARAMETERS: T0323TS168_1-D2.T0323_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   106        37 - 142         5.00     5.26
  LCS_AVERAGE:     89.63

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        45 - 69          1.93    12.48
  LCS_AVERAGE:     15.55

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        53 - 69          0.55    10.49
  LONGEST_CONTINUOUS_SEGMENT:    17        93 - 109         0.85     7.51
  LCS_AVERAGE:      9.44

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     P      34     P      34      3    5  102     3    3    3    5    8   12   19   44   51   56   77   86   89   92   99  104  111  114  116  116 
LCS_GDT     T      35     T      35      3    5  102     3    3    3    4    8   10   14   26   33   56   74   86   89   92   99  106  111  114  116  116 
LCS_GDT     K      36     K      36      3    5  103     3    3    3    3    4    8   13   14   27   49   63   70   82   92   95  102  111  114  116  116 
LCS_GDT     P      37     P      37      3   15  106     3    3    4   13   24   33   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     N      38     N      38      3   15  106     1    3    4   14   17   33   43   53   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     P      39     P      39     12   17  106    12   14   14   20   27   36   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     F      40     F      40     12   17  106    12   14   14   14   20   33   37   49   65   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Q      41     Q      41     12   17  106    12   14   14   16   23   33   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S      42     S      42     12   17  106    12   14   16   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L      43     L      43     12   17  106    12   14   18   22   27   38   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     V      44     V      44     12   17  106    12   14   14   22   27   35   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S      45     S      45     12   25  106    12   14   16   20   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S      46     S      46     12   25  106    12   16   19   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     I      47     I      47     12   25  106    12   14   14   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     V      48     V      48     12   25  106    12   14   14   14   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E      49     E      49     12   25  106    12   15   19   23   32   39   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Q      50     Q      50     12   25  106     9   14   15   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Q      51     Q      51      3   25  106     2    8   17   19   27   36   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L      52     L      52      3   25  106     3    9   12   17   22   30   43   49   59   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S      53     S      53     17   25  106     3   17   19   20   23   30   38   47   57   67   80   92  100  104  107  110  111  114  116  116 
LCS_GDT     I      54     I      54     17   25  106     7   17   19   20   23   30   38   47   57   67   81   92  100  104  107  110  111  114  116  116 
LCS_GDT     K      55     K      55     17   25  106    11   17   19   20   23   29   38   47   57   63   77   92  100  104  107  110  111  114  116  116 
LCS_GDT     A      56     A      56     17   25  106    12   17   19   20   23   29   38   47   57   63   80   92  100  104  107  110  111  114  116  116 
LCS_GDT     A      57     A      57     17   25  106    12   17   19   20   27   36   43   50   65   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S      58     S      58     17   25  106    12   17   19   20   28   37   43   52   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     A      59     A      59     17   25  106    12   17   19   20   24   36   40   50   65   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     I      60     I      60     17   25  106    12   17   19   20   23   36   43   50   65   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Y      61     Y      61     17   25  106    12   17   19   20   27   37   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     G      62     G      62     17   25  106    12   17   19   20   27   38   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     R      63     R      63     17   25  106    12   17   19   20   26   36   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     V      64     V      64     17   25  106    12   17   19   20   24   33   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E      65     E      65     17   25  106    12   17   19   20   24   33   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Q      66     Q      66     17   25  106    12   17   19   20   25   33   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L      67     L      67     17   25  106    12   17   19   20   23   32   43   49   60   73   81   93  100  104  107  110  111  114  116  116 
LCS_GDT     V      68     V      68     17   25  106    12   17   19   20   22   30   43   49   59   70   80   93  100  104  107  110  111  114  116  116 
LCS_GDT     G      69     G      69     17   25  106    12   17   19   20   22   32   43   49   61   71   81   93  100  104  107  110  111  114  116  116 
LCS_GDT     G      70     G      70      7   22  106     4    6    7    8   17   27   28   43   58   73   80   92  100  104  107  110  111  114  116  116 
LCS_GDT     A      71     A      71      7   12  106     4    6    7   11   12   18   24   32   45   54   77   86   89   99  106  110  111  114  116  116 
LCS_GDT     L      72     L      72      7   12  106     4    6    7   11   12   15   24   28   36   50   70   83   89   99  106  110  111  114  116  116 
LCS_GDT     E      73     E      73      7   12  106     3    6    7    8   10   12   16   20   25   32   45   63   74   90   98  106  111  114  116  116 
LCS_GDT     K      74     K      74      7   12  106     4    7    7    8   10   12   16   20   25   28   40   60   70   90  100  106  111  114  116  116 
LCS_GDT     P      75     P      75      7   12  106     4    7    7    8   11   14   29   42   54   59   72   84  100  104  107  110  111  114  116  116 
LCS_GDT     E      76     E      76      7   12  106     4    7    7    8   22   36   41   50   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Q      77     Q      77      7   12  106     4    7    7   18   27   36   41   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L      78     L      78      7   12  106     4    9    9   18   24   33   43   50   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Y      79     Y      79      7   12  106     4    7    7    8   18   24   43   49   65   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     R      80     R      80      7    8  106     3    7    7   10   17   26   38   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     V      81     V      81      3    8  106     1    4    6   12   18   29   38   52   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S      82     S      82      3    9  106     3    5   12   19   27   36   43   52   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     D      83     D      83      8    9  106     6    9    9   14   22   30   40   49   59   67   80   92  100  104  107  110  111  114  116  116 
LCS_GDT     E      84     E      84      8    9  106     6    9    9   10   22   27   43   49   59   70   80   93  100  104  107  110  111  114  116  116 
LCS_GDT     A      85     A      85      8    9  106     6    9    9    9   18   30   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L      86     L      86      8    9  106     6    9    9   19   27   36   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     R      87     R      87      8    9  106     6    9    9   15   25   35   43   50   61   71   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Q      88     Q      88      8    9  106     6    9    9   13   27   36   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     A      89     A      89      8    9  106     6    9    9   11   17   21   27   45   62   72   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     G      90     G      90      8    9  106     3    9    9    9   15   20   25   30   37   46   64   74   91  100  107  110  111  114  116  116 
LCS_GDT     V      91     V      91      4   18  106     3    7   12   18   23   28   32   37   54   72   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S      92     S      92      4   18  106     3    4   11   17   24   36   42   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     K      93     K      93     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  106  110  111  114  116  116 
LCS_GDT     R      94     R      94     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     K      95     K      95     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     I      96     I      96     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E      97     E      97     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     Y      98     Y      98     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     I      99     I      99     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     R     100     R     100     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     H     101     H     101     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     V     102     V     102     17   19  106    15   16   17   23   32   39   45   53   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     C     103     C     103     17   19  106    15   16   17   23   31   39   45   53   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E     104     E     104     17   19  106    15   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     H     105     H     105     17   19  106    15   16   17   23   31   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     V     106     V     106     17   19  106    15   16   17   22   30   38   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E     107     E     107     17   19  106    15   16   17   22   30   38   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     S     108     S     108     17   19  106    12   16   17   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     G     109     G     109     17   19  106     3    6   16   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     R     110     R     110      3   19  106     3    3    4    8   17   22   28   42   59   72   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L     111     L     111      8   22  106     3    7   14   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     D     112     D     112      8   22  106     5    7    9   20   28   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     F     113     F     113      8   22  106     5    7   10   22   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     T     114     T     114      8   22  106     5    7   10   22   30   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E     115     E     115      8   22  106     5    7   16   23   30   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L     116     L     116      8   22  106     5    8   16   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E     117     E     117      8   22  106     5    8   16   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     G     118     G     118      8   22  106     3    8   15   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     A     119     A     119      8   22  106     3    7   15   23   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E     120     E     120     12   22  106     3    4   10   13   14   17   33   45   54   59   70   83   89   95  101  107  111  114  116  116 
LCS_GDT     A     121     A     121     12   22  106     8   10   12   22   32   39   45   50   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     T     122     T     122     12   22  106     8   10   12   22   32   39   45   50   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     T     123     T     123     12   22  106     8   10   12   22   32   39   45   50   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     V     124     V     124     12   22  106     8   10   12   22   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     I     125     I     125     12   22  106     8   10   12   22   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     E     126     E     126     12   22  106     8   10   12   22   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     K     127     K     127     12   22  106     8   10   12   22   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L     128     L     128     12   22  106     8   10   12   22   32   39   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     T     129     T     129     12   22  106     7   10   12   19   27   37   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     A     130     A     130     12   22  106     5   10   12   19   27   37   45   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     I     131     I     131     12   22  106     3    9   11   17   23   31   43   54   66   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     K     132     K     132      4   22  106     3    3    8   18   25   36   43   50   59   75   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     G     133     G     133      4   18  106     3    3    5   11   15   22   34   47   55   67   80   93  100  104  107  110  111  114  116  116 
LCS_GDT     I     134     I     134      4   13  106     3    3    4    4    5   13   21   34   42   51   58   72   83   94  107  110  110  114  116  116 
LCS_GDT     G     135     G     135     11   14  106     3    4   10   11   17   26   30   38   45   57   67   82   94  100  107  110  110  114  116  116 
LCS_GDT     Q     136     Q     136     11   14  106     9   10   11   11   17   22   30   38   45   57   68   75   82   89  107  110  110  114  116  116 
LCS_GDT     W     137     W     137     11   14  106     9   10   11   15   23   30   38   47   55   62   72   88   97  104  107  110  111  114  116  116 
LCS_GDT     T     138     T     138     11   14  106     9   10   11   14   23   30   38   47   57   68   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     A     139     A     139     11   14  106     9   10   11   11   17   26   35   47   55   62   78   92  100  104  107  110  111  114  116  116 
LCS_GDT     E     140     E     140     11   14  106     9   10   11   11   22   26   38   47   55   62   70   82   97  104  107  110  111  114  116  116 
LCS_GDT     M     141     M     141     11   14  106     9   10   11   16   23   30   38   47   55   67   80   93  100  104  107  110  111  114  116  116 
LCS_GDT     F     142     F     142     11   14  106     9   10   11   15   23   30   38   48   57   71   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     M     143     M     143     11   14   74     9   10   11   12   22   29   38   47   55   66   79   93  100  104  107  110  111  114  116  116 
LCS_GDT     M     144     M     144     11   14   74     9   10   11   12   22   26   34   47   55   62   71   85   97  104  107  110  111  114  116  116 
LCS_GDT     F     145     F     145     11   14   74     4   10   11   16   22   29   38   47   55   67   80   93  100  104  107  110  111  114  116  116 
LCS_GDT     S     146     S     146     11   14   74     4    6   11   16   22   30   38   47   58   70   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     L     147     L     147      3   14   74     3    3   17   17   22   30   38   49   57   70   83   93  100  104  107  110  111  114  116  116 
LCS_GDT     G     148     G     148      3   14   74     3    3    5    5   12   20   34   45   56   67   80   93  100  104  107  110  111  114  116  116 
LCS_GDT     R     149     R     149      3    5   74     3    3    8   16   22   29   37   47   58   68   80   93  100  104  107  110  111  114  116  116 
LCS_AVERAGE  LCS_A:  38.21  (   9.44   15.55   89.63 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     17     19     23     32     39     45     54     66     75     83     93    100    104    107    110    111    114    116    116 
GDT PERCENT_CA  12.93  14.66  16.38  19.83  27.59  33.62  38.79  46.55  56.90  64.66  71.55  80.17  86.21  89.66  92.24  94.83  95.69  98.28 100.00 100.00
GDT RMS_LOCAL    0.23   0.55   0.73   1.38   1.81   1.99   2.28   2.98   3.29   3.58   3.92   4.27   4.48   4.62   4.76   4.87   5.06   5.12   5.25   5.25
GDT RMS_ALL_CA   7.53  10.49  11.98   7.38   7.12   7.11   7.10   6.04   5.93   5.70   5.50   5.35   5.30   5.30   5.32   5.29   5.28   5.26   5.25   5.25

#      Molecule1      Molecule2       DISTANCE
LGA    P      34      P      34          6.626
LGA    T      35      T      35          6.708
LGA    K      36      K      36          7.973
LGA    P      37      P      37          3.745
LGA    N      38      N      38          4.749
LGA    P      39      P      39          3.004
LGA    F      40      F      40          5.014
LGA    Q      41      Q      41          3.385
LGA    S      42      S      42          0.791
LGA    L      43      L      43          3.727
LGA    V      44      V      44          3.806
LGA    S      45      S      45          1.569
LGA    S      46      S      46          2.048
LGA    I      47      I      47          3.037
LGA    V      48      V      48          2.598
LGA    E      49      E      49          1.888
LGA    Q      50      Q      50          1.571
LGA    Q      51      Q      51          3.844
LGA    L      52      L      52          6.536
LGA    S      53      S      53         10.070
LGA    I      54      I      54          9.049
LGA    K      55      K      55          9.157
LGA    A      56      A      56          8.609
LGA    A      57      A      57          5.266
LGA    S      58      S      58          4.517
LGA    A      59      A      59          5.409
LGA    I      60      I      60          4.807
LGA    Y      61      Y      61          1.642
LGA    G      62      G      62          1.620
LGA    R      63      R      63          3.632
LGA    V      64      V      64          4.172
LGA    E      65      E      65          3.138
LGA    Q      66      Q      66          3.300
LGA    L      67      L      67          6.123
LGA    V      68      V      68          6.873
LGA    G      69      G      69          6.517
LGA    G      70      G      70          6.217
LGA    A      71      A      71          7.219
LGA    L      72      L      72          7.807
LGA    E      73      E      73          9.168
LGA    K      74      K      74          9.232
LGA    P      75      P      75          7.751
LGA    E      76      E      76          4.337
LGA    Q      77      Q      77          3.288
LGA    L      78      L      78          4.657
LGA    Y      79      Y      79          5.157
LGA    R      80      R      80          3.533
LGA    V      81      V      81          4.276
LGA    S      82      S      82          4.706
LGA    D      83      D      83          8.207
LGA    E      84      E      84          7.464
LGA    A      85      A      85          3.784
LGA    L      86      L      86          4.123
LGA    R      87      R      87          6.732
LGA    Q      88      Q      88          3.769
LGA    A      89      A      89          5.686
LGA    G      90      G      90          9.675
LGA    V      91      V      91          6.833
LGA    S      92      S      92          2.732
LGA    K      93      K      93          3.306
LGA    R      94      R      94          3.374
LGA    K      95      K      95          3.919
LGA    I      96      I      96          3.736
LGA    E      97      E      97          3.330
LGA    Y      98      Y      98          3.690
LGA    I      99      I      99          3.901
LGA    R     100      R     100          3.594
LGA    H     101      H     101          3.489
LGA    V     102      V     102          4.028
LGA    C     103      C     103          4.053
LGA    E     104      E     104          3.512
LGA    H     105      H     105          3.758
LGA    V     106      V     106          4.025
LGA    E     107      E     107          3.949
LGA    S     108      S     108          3.228
LGA    G     109      G     109          1.848
LGA    R     110      R     110          5.872
LGA    L     111      L     111          1.219
LGA    D     112      D     112          1.601
LGA    F     113      F     113          2.066
LGA    T     114      T     114          2.018
LGA    E     115      E     115          0.891
LGA    L     116      L     116          1.430
LGA    E     117      E     117          2.699
LGA    G     118      G     118          3.928
LGA    A     119      A     119          3.960
LGA    E     120      E     120          7.587
LGA    A     121      A     121          4.078
LGA    T     122      T     122          4.220
LGA    T     123      T     123          4.317
LGA    V     124      V     124          3.317
LGA    I     125      I     125          2.490
LGA    E     126      E     126          2.912
LGA    K     127      K     127          2.610
LGA    L     128      L     128          1.741
LGA    T     129      T     129          2.847
LGA    A     130      A     130          3.052
LGA    I     131      I     131          3.953
LGA    K     132      K     132          6.050
LGA    G     133      G     133          8.628
LGA    I     134      I     134         11.439
LGA    G     135      G     135         11.037
LGA    Q     136      Q     136         12.178
LGA    W     137      W     137         11.293
LGA    T     138      T     138          8.244
LGA    A     139      A     139          8.800
LGA    E     140      E     140         10.554
LGA    M     141      M     141          9.635
LGA    F     142      F     142          7.180
LGA    M     143      M     143          8.435
LGA    M     144      M     144         10.704
LGA    F     145      F     145          9.328
LGA    S     146      S     146          7.184
LGA    L     147      L     147          7.284
LGA    G     148      G     148          8.966
LGA    R     149      R     149          8.181

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  116  116    4.0     54    2.98    43.966    38.670     1.755

LGA_LOCAL      RMSD =  2.977  Number of atoms =   54  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.825  Number of atoms =  116 
Std_ALL_ATOMS  RMSD =  5.249  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.622291 * X  +  -0.177675 * Y  +   0.762355 * Z  +   9.899231
  Y_new =   0.782729 * X  +  -0.129516 * Y  +   0.608737 * Z  +  40.567245
  Z_new =  -0.009421 * X  +   0.975529 * Y  +   0.219668 * Z  +   1.582846 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.349312   -1.792281  [ DEG:    77.3099   -102.6901 ]
  Theta =   0.009421    3.132172  [ DEG:     0.5398    179.4602 ]
  Phi   =   2.242498   -0.899095  [ DEG:   128.4857    -51.5143 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0323TS168_1-D2                               
REMARK     2: T0323_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0323TS168_1-D2.T0323_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  116  116   4.0   54   2.98  38.670     5.25
REMARK  ---------------------------------------------------------- 
MOLECULE T0323TS168_1-D2
PFRMAT TS
TARGET T0323
MODEL 1
PARENT N/A
ATOM     34  CA  PRO    34      22.386  23.705   1.620  1.00 25.00           C
ATOM     35  CA  THR    35      24.888  26.408   0.575  1.00 25.00           C
ATOM     36  CA  LYS    36      24.380  27.369  -3.064  1.00 25.00           C
ATOM     37  CA  PRO    37      21.417  29.775  -3.485  1.00 25.00           C
ATOM     38  CA  ASN    38      20.362  33.287  -4.547  1.00 25.00           C
ATOM     39  CA  PRO    39      17.714  35.991  -4.188  1.00 25.00           C
ATOM     40  CA  PHE    40      16.447  39.595  -4.462  1.00 25.00           C
ATOM     41  CA  GLN    41      13.595  38.444  -6.743  1.00 25.00           C
ATOM     42  CA  SER    42      12.669  35.695  -4.243  1.00 25.00           C
ATOM     43  CA  LEU    43      12.661  38.255  -1.394  1.00 25.00           C
ATOM     44  CA  VAL    44      10.406  40.571  -3.450  1.00 25.00           C
ATOM     45  CA  SER    45       8.015  37.662  -4.149  1.00 25.00           C
ATOM     46  CA  SER    46       7.917  36.812  -0.417  1.00 25.00           C
ATOM     47  CA  ILE    47       7.159  40.471   0.422  1.00 25.00           C
ATOM     48  CA  VAL    48       4.337  40.505  -2.167  1.00 25.00           C
ATOM     49  CA  GLU    49       2.893  37.290  -0.672  1.00 25.00           C
ATOM     50  CA  GLN    50       3.032  38.828   2.833  1.00 25.00           C
ATOM     51  CA  GLN    51       1.246  41.965   1.555  1.00 25.00           C
ATOM     52  CA  LEU    52      -2.414  42.360   2.305  1.00 25.00           C
ATOM     53  CA  SER    53      -3.979  40.089  -0.261  1.00 25.00           C
ATOM     54  CA  ILE    54      -2.670  36.515  -0.312  1.00 25.00           C
ATOM     55  CA  LYS    55      -4.747  34.449  -2.778  1.00 25.00           C
ATOM     56  CA  ALA    56      -3.700  36.767  -5.640  1.00 25.00           C
ATOM     57  CA  ALA    57      -0.027  36.411  -4.617  1.00 25.00           C
ATOM     58  CA  SER    58      -0.391  32.599  -4.547  1.00 25.00           C
ATOM     59  CA  ALA    59      -1.977  32.661  -8.032  1.00 25.00           C
ATOM     60  CA  ILE    60       0.897  34.834  -9.329  1.00 25.00           C
ATOM     61  CA  TYR    61       3.446  32.399  -7.831  1.00 25.00           C
ATOM     62  CA  GLY    62       1.645  29.454  -9.491  1.00 25.00           C
ATOM     63  CA  ARG    63       1.682  31.294 -12.849  1.00 25.00           C
ATOM     64  CA  VAL    64       5.429  31.982 -12.460  1.00 25.00           C
ATOM     65  CA  GLU    65       6.051  28.286 -11.674  1.00 25.00           C
ATOM     66  CA  GLN    66       4.047  27.264 -14.773  1.00 25.00           C
ATOM     67  CA  LEU    67       6.081  29.697 -16.920  1.00 25.00           C
ATOM     68  CA  VAL    68       9.337  28.256 -15.512  1.00 25.00           C
ATOM     69  CA  GLY    69       8.329  24.593 -15.295  1.00 25.00           C
ATOM     70  CA  GLY    70      11.346  23.693 -17.343  1.00 25.00           C
ATOM     71  CA  ALA    71      14.297  26.075 -17.980  1.00 25.00           C
ATOM     72  CA  LEU    72      14.878  29.860 -17.923  1.00 25.00           C
ATOM     73  CA  GLU    73      15.319  29.633 -21.738  1.00 25.00           C
ATOM     74  CA  LYS    74      11.967  31.064 -22.722  1.00 25.00           C
ATOM     75  CA  PRO    75      12.487  33.931 -20.191  1.00 25.00           C
ATOM     76  CA  GLU    76      10.892  36.696 -22.310  1.00 25.00           C
ATOM     77  CA  GLN    77       7.401  35.503 -21.283  1.00 25.00           C
ATOM     78  CA  LEU    78       8.450  35.522 -17.600  1.00 25.00           C
ATOM     79  CA  TYR    79       9.820  39.078 -17.984  1.00 25.00           C
ATOM     80  CA  ARG    80       6.538  40.194 -19.612  1.00 25.00           C
ATOM     81  CA  VAL    81       3.626  42.640 -19.113  1.00 25.00           C
ATOM     82  CA  SER    82       1.372  41.176 -21.724  1.00 25.00           C
ATOM     83  CA  ASP    83       0.516  37.835 -20.019  1.00 25.00           C
ATOM     84  CA  GLU    84      -2.748  36.378 -18.644  1.00 25.00           C
ATOM     85  CA  ALA    85      -1.312  36.445 -15.095  1.00 25.00           C
ATOM     86  CA  LEU    86      -0.254  40.095 -15.565  1.00 25.00           C
ATOM     87  CA  ARG    87      -3.765  40.978 -16.814  1.00 25.00           C
ATOM     88  CA  GLN    88      -5.311  39.238 -13.773  1.00 25.00           C
ATOM     89  CA  ALA    89      -2.882  40.449 -11.111  1.00 25.00           C
ATOM     90  CA  GLY    90      -2.466  43.827 -12.812  1.00 25.00           C
ATOM     91  CA  VAL    91      -3.673  45.283  -9.578  1.00 25.00           C
ATOM     92  CA  SER    92      -5.314  43.592  -6.615  1.00 25.00           C
ATOM     93  CA  LYS    93      -5.027  46.509  -4.149  1.00 25.00           C
ATOM     94  CA  ARG    94      -2.446  48.267  -1.930  1.00 25.00           C
ATOM     95  CA  LYS    95      -0.422  45.025  -1.673  1.00 25.00           C
ATOM     96  CA  ILE    96      -0.529  44.629  -5.481  1.00 25.00           C
ATOM     97  CA  GLU    97       0.661  48.244  -5.916  1.00 25.00           C
ATOM     98  CA  TYR    98       3.531  47.620  -3.458  1.00 25.00           C
ATOM     99  CA  ILE    99       4.521  44.457  -5.377  1.00 25.00           C
ATOM    100  CA  ARG   100       4.484  46.414  -8.669  1.00 25.00           C
ATOM    101  CA  HIS   101       6.682  49.133  -7.106  1.00 25.00           C
ATOM    102  CA  VAL   102       9.133  46.467  -5.857  1.00 25.00           C
ATOM    103  CA  CYS   103       9.259  44.909  -9.354  1.00 25.00           C
ATOM    104  CA  GLU   104       9.942  48.352 -10.888  1.00 25.00           C
ATOM    105  CA  HIS   105      12.756  48.949  -8.359  1.00 25.00           C
ATOM    106  CA  VAL   106      14.273  45.536  -9.204  1.00 25.00           C
ATOM    107  CA  GLU   107      14.109  46.359 -12.939  1.00 25.00           C
ATOM    108  CA  SER   108      14.811  49.982 -13.932  1.00 25.00           C
ATOM    109  CA  GLY   109      18.267  48.730 -15.115  1.00 25.00           C
ATOM    110  CA  ARG   110      18.915  45.144 -13.995  1.00 25.00           C
ATOM    111  CA  LEU   111      19.085  46.715 -10.532  1.00 25.00           C
ATOM    112  CA  ASP   112      22.778  46.386 -11.283  1.00 25.00           C
ATOM    113  CA  PHE   113      22.233  42.783 -10.142  1.00 25.00           C
ATOM    114  CA  THR   114      25.930  42.201 -10.954  1.00 25.00           C
ATOM    115  CA  GLU   115      26.919  45.081  -8.631  1.00 25.00           C
ATOM    116  CA  LEU   116      24.753  43.604  -5.838  1.00 25.00           C
ATOM    117  CA  GLU   117      26.390  40.179  -6.345  1.00 25.00           C
ATOM    118  CA  GLY   118      30.019  41.261  -6.495  1.00 25.00           C
ATOM    119  CA  ALA   119      29.141  42.889  -3.152  1.00 25.00           C
ATOM    120  CA  GLU   120      26.178  41.175  -1.386  1.00 25.00           C
ATOM    121  CA  ALA   121      24.744  44.522  -0.171  1.00 25.00           C
ATOM    122  CA  THR   122      24.710  48.352  -0.132  1.00 25.00           C
ATOM    123  CA  THR   123      24.305  48.411  -3.940  1.00 25.00           C
ATOM    124  CA  VAL   124      21.404  45.924  -3.695  1.00 25.00           C
ATOM    125  CA  ILE   125      19.740  48.090  -1.012  1.00 25.00           C
ATOM    126  CA  GLU   126      20.144  51.187  -3.227  1.00 25.00           C
ATOM    127  CA  LYS   127      18.591  49.307  -6.181  1.00 25.00           C
ATOM    128  CA  LEU   128      15.651  48.225  -3.978  1.00 25.00           C
ATOM    129  CA  THR   129      15.149  51.843  -2.829  1.00 25.00           C
ATOM    130  CA  ALA   130      15.187  53.031  -6.469  1.00 25.00           C
ATOM    131  CA  ILE   131      11.423  53.640  -6.538  1.00 25.00           C
ATOM    132  CA  LYS   132       8.690  53.487  -9.235  1.00 25.00           C
ATOM    133  CA  GLY   133       5.608  54.394  -7.198  1.00 25.00           C
ATOM    134  CA  ILE   134       2.325  53.084  -5.774  1.00 25.00           C
ATOM    135  CA  GLY   135       2.281  52.500  -2.044  1.00 25.00           C
ATOM    136  CA  GLN   136       5.953  52.068  -2.745  1.00 25.00           C
ATOM    137  CA  TRP   137       6.303  51.795   1.059  1.00 25.00           C
ATOM    138  CA  THR   138       5.883  47.994   0.849  1.00 25.00           C
ATOM    139  CA  ALA   139       8.560  47.825  -1.885  1.00 25.00           C
ATOM    140  CA  GLU   140      10.930  49.922   0.271  1.00 25.00           C
ATOM    141  CA  MET   141      10.311  47.599   3.254  1.00 25.00           C
ATOM    142  CA  PHE   142      11.036  44.546   1.058  1.00 25.00           C
ATOM    143  CA  MET   143      14.283  46.165  -0.165  1.00 25.00           C
ATOM    144  CA  MET   144      15.312  46.894   3.452  1.00 25.00           C
ATOM    145  CA  PHE   145      14.587  43.259   4.415  1.00 25.00           C
ATOM    146  CA  SER   146      16.691  42.030   1.460  1.00 25.00           C
ATOM    147  CA  LEU   147      19.310  41.210   4.074  1.00 25.00           C
ATOM    148  CA  GLY   148      21.901  42.190   6.632  1.00 25.00           C
ATOM    149  CA  ARG   149      20.952  40.143   9.743  1.00 25.00           C
TER
END
