
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  116 (  116),  selected  116 , name T0323TS168_5-D2
# Molecule2: number of CA atoms  116 (  868),  selected  116 , name T0323_D2.pdb
# PARAMETERS: T0323TS168_5-D2.T0323_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    73        35 - 107         5.00     7.25
  LONGEST_CONTINUOUS_SEGMENT:    73        36 - 108         4.95     7.14
  LCS_AVERAGE:     53.95

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        42 - 69          1.89     7.75
  LCS_AVERAGE:     15.31

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        51 - 69          0.83     9.60
  LCS_AVERAGE:      9.82

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     P      34     P      34      3    6   37     0    3    3    5   10   11   11   14   19   21   21   25   25   31   36   45   55   68   72   80 
LCS_GDT     T      35     T      35      4    6   73     0    3    5    6   10   15   17   18   19   21   23   29   37   49   56   74   79   86   89   97 
LCS_GDT     K      36     K      36      4    6   73     0    3    4    7   12   15   17   18   19   23   28   53   60   64   73   82   87   92   96  100 
LCS_GDT     P      37     P      37      4    7   73     2    4    4    5    9   15   26   34   43   54   63   69   75   81   87   89   91   95   97  100 
LCS_GDT     N      38     N      38      4   23   73     3    5    7   10   19   32   40   46   60   65   71   74   81   86   89   92   94   96  100  105 
LCS_GDT     P      39     P      39     12   27   73    11   12   17   24   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     F      40     F      40     12   27   73    11   12   17   23   33   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Q      41     Q      41     12   27   73    11   12   17   23   33   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S      42     S      42     12   28   73    11   12   17   28   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     L      43     L      43     12   28   73    11   12   17   28   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     V      44     V      44     12   28   73    11   12   17   23   34   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S      45     S      45     12   28   73    11   12   17   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S      46     S      46     12   28   73    11   12   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     I      47     I      47     12   28   73    11   12   17   23   34   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     V      48     V      48     12   28   73    11   12   17   23   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     E      49     E      49     13   28   73    11   12   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Q      50     Q      50     13   28   73     9   12   17   23   34   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Q      51     Q      51     19   28   73     4   15   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     L      52     L      52     19   28   73     5   13   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S      53     S      53     19   28   73     5   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     I      54     I      54     19   28   73     5   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     K      55     K      55     19   28   73     9   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     A      56     A      56     19   28   73     8   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     A      57     A      57     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S      58     S      58     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     A      59     A      59     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     I      60     I      60     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Y      61     Y      61     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     G      62     G      62     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     R      63     R      63     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     V      64     V      64     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     E      65     E      65     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Q      66     Q      66     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     L      67     L      67     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     V      68     V      68     19   28   73    13   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     G      69     G      69     19   28   73     3   16   20   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     G      70     G      70      5   27   73     3    4    5    6   13   22   31   46   59   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     A      71     A      71      5   10   73     3    6    7    9   11   13   17   21   25   34   41   52   59   71   85   95  100  103  105  107 
LCS_GDT     L      72     L      72      5   10   73     3    8    9    9   11   13   14   16   20   26   33   40   50   62   76   89  100  103  105  107 
LCS_GDT     E      73     E      73      3   10   73     3    3    4    9   10   13   13   16   20   25   29   34   46   62   68   90  100  103  105  107 
LCS_GDT     K      74     K      74      7   10   73     3    8    9    9   11   15   21   24   29   34   47   55   62   73   85   95  100  103  105  107 
LCS_GDT     P      75     P      75      7   10   73     3    8    9   11   15   19   25   32   39   46   58   67   77   83   91   95  100  103  105  107 
LCS_GDT     E      76     E      76      7   10   73     4    8   16   23   29   38   44   56   64   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Q      77     Q      77      7   10   73     4    8   16   25   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     L      78     L      78      7   10   73    13   16   20   21   23   29   34   45   54   67   74   81   86   89   91   94  100  103  105  107 
LCS_GDT     Y      79     Y      79      7   10   73     4    8    9   19   23   29   35   46   54   63   73   80   86   87   91   93   95   99  105  107 
LCS_GDT     R      80     R      80      7   11   73     3    8    9   10   12   38   47   55   62   72   77   82   86   88   91   93   95  101  105  107 
LCS_GDT     V      81     V      81      3   11   73     0    8   15   21   33   43   50   60   66   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S      82     S      82      8   11   73     2   10   17   28   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     D      83     D      83      8   11   73     6    8   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     E      84     E      84      8   11   73     6    8   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     A      85     A      85      8   11   73     6    7   10   23   34   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     L      86     L      86      8   11   73     6   10   16   23   33   43   50   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     R      87     R      87      8   11   73     6    7    9   21   32   43   47   58   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Q      88     Q      88      8   11   73     6    7    9   23   32   36   47   57   65   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     A      89     A      89      8   19   73     3    7    9   10   21   27   33   38   47   57   66   72   79   83   90   94  100  103  105  107 
LCS_GDT     G      90     G      90      4   19   73     3   12   17   23   32   40   49   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     V      91     V      91      4   19   73     3    4   15   17   24   29   39   57   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S      92     S      92     16   19   73     3   12   17   23   30   35   42   57   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     K      93     K      93     16   19   73    15   15   15   17   20   26   35   50   59   68   76   82   87   89   91   95  100  103  105  107 
LCS_GDT     R      94     R      94     16   19   73    15   15   15   19   29   40   47   57   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     K      95     K      95     16   19   73    15   15   15   18   27   40   47   57   66   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     I      96     I      96     16   19   73    15   15   15   17   25   40   48   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     E      97     E      97     16   19   73    15   15   15   23   34   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Y      98     Y      98     16   19   73    15   15   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     I      99     I      99     16   19   73    15   15   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     R     100     R     100     16   19   73    15   15   15   20   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     H     101     H     101     16   19   73    15   15   15   25   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     V     102     V     102     16   19   73    15   15   15   25   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     C     103     C     103     16   19   73    15   15   15   17   29   41   51   59   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     E     104     E     104     16   19   73    15   15   15   17   21   31   44   52   63   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     H     105     H     105     16   19   73    15   15   15   17   22   31   43   51   59   70   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     V     106     V     106     16   19   73    15   15   15   17   21   31   43   50   59   67   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     E     107     E     107     16   19   73    15   15   15   17   20   27   38   50   57   67   77   82   87   89   91   95  100  103  105  107 
LCS_GDT     S     108     S     108      3   18   73     1    4    5   10   15   16   18   25   32   42   48   58   64   73   86   94   95  101  104  107 
LCS_GDT     G     109     G     109      3    6   72     0    4    5    6    6    7    9   12   16   22   31   37   40   49   58   65   70   78   86   96 
LCS_GDT     R     110     R     110      3    6   44     1    4    5    6    6    7    9   11   13   14   16   19   27   30   40   47   55   63   69   72 
LCS_GDT     L     111     L     111      3    6   44     1    4    4    4    5    8   10   12   16   22   28   36   40   46   55   65   68   76   86   91 
LCS_GDT     D     112     D     112      3    9   44     0    3    4    5    9   19   24   28   30   33   42   53   61   65   67   80   86   94   97  104 
LCS_GDT     F     113     F     113      7    9   44     5    7    7    8   15   22   26   29   40   47   55   70   79   87   90   95  100  103  105  107 
LCS_GDT     T     114     T     114      7    9   44     5    7    7    8   15   22   26   29   40   47   55   62   78   84   90   95  100  103  105  107 
LCS_GDT     E     115     E     115      7    9   44     5    7    7   17   19   22   26   29   40   47   55   65   78   87   90   95  100  103  105  107 
LCS_GDT     L     116     L     116      7    9   44     5    7    7   15   19   22   26   29   40   47   55   70   80   87   90   95  100  103  105  107 
LCS_GDT     E     117     E     117      7    9   44     5    7    7    8   10   17   26   29   40   45   53   62   78   84   90   95  100  103  105  107 
LCS_GDT     G     118     G     118      7   17   44     3    7    7   11   19   22   26   29   40   45   53   65   78   84   90   95  100  103  105  107 
LCS_GDT     A     119     A     119      7   17   44     3    7    7    8   14   16   20   29   40   45   55   70   78   87   90   95  100  103  105  107 
LCS_GDT     E     120     E     120      3   17   44     1    3    6   11   17   22   26   29   40   45   56   70   80   87   90   95  100  103  105  107 
LCS_GDT     A     121     A     121     14   17   44     9   13   15   17   19   22   27   42   54   64   76   82   87   89   91   95  100  103  105  107 
LCS_GDT     T     122     T     122     14   17   44     9   13   15   17   19   22   30   42   55   64   76   82   87   89   91   95  100  103  105  107 
LCS_GDT     T     123     T     123     14   17   44     9   13   15   17   19   22   26   35   46   61   73   81   87   89   91   95  100  103  105  107 
LCS_GDT     V     124     V     124     14   17   44     9   13   15   17   19   22   31   46   57   66   77   82   87   89   91   95  100  103  105  107 
LCS_GDT     I     125     I     125     14   17   44     9   13   15   17   30   39   49   57   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     E     126     E     126     14   17   44     9   13   15   17   19   33   44   56   64   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     K     127     K     127     14   17   44     9   13   15   17   19   22   31   40   55   68   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     L     128     L     128     14   17   44     9   13   15   17   22   31   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     T     129     T     129     14   17   44     9   13   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     A     130     A     130     14   17   44     7   13   15   17   22   32   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     I     131     I     131     14   17   44     6   13   15   17   22   31   45   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     K     132     K     132     14   17   44     7   13   15   23   33   40   49   57   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     G     133     G     133     14   17   44     7    8   16   23   33   40   49   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     I     134     I     134     14   17   44     7   12   17   23   33   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     G     135     G     135      4   16   44     7    8   14   23   33   40   49   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     Q     136     Q     136     11   13   44     9   10   12   13   18   25   30   41   52   57   65   70   74   86   88   91  100  103  105  107 
LCS_GDT     W     137     W     137     11   13   44     9   10   12   14   20   39   47   57   66   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     T     138     T     138     11   13   44     9   10   12   13   18   25   38   56   63   71   77   82   87   89   91   95  100  103  105  107 
LCS_GDT     A     139     A     139     11   13   44     9   10   12   13   18   22   34   47   52   68   76   82   87   89   91   95  100  103  105  107 
LCS_GDT     E     140     E     140     11   13   44     9   10   12   13   19   28   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     M     141     M     141     11   13   44     9   10   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     F     142     F     142     11   13   44     9   13   18   29   35   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     M     143     M     143     11   13   44     9   10   12   13   18   25   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     M     144     M     144     11   13   42     9   10   12   21   33   43   53   61   67   72   79   82   87   89   91   94  100  103  105  107 
LCS_GDT     F     145     F     145     11   13   42     3   10   14   22   33   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_GDT     S     146     S     146     11   13   42     3    6   14   20   29   42   49   61   66   72   79   82   87   89   91   94  100  103  105  107 
LCS_GDT     L     147     L     147      4   13   42     0    8   13   23   33   43   53   61   67   72   79   82   87   89   91   94  100  103  105  107 
LCS_GDT     G     148     G     148      3   13   42     0    3    5    6   23   32   44   55   63   71   77   82   86   89   91   93   95  100  105  107 
LCS_GDT     R     149     R     149      3    6   42     0    3    6   19   34   43   53   61   67   72   79   82   87   89   91   95  100  103  105  107 
LCS_AVERAGE  LCS_A:  26.36  (   9.82   15.31   53.95 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     20     29     35     43     53     61     67     72     79     82     87     89     91     95    100    103    105    107 
GDT PERCENT_CA  12.93  13.79  17.24  25.00  30.17  37.07  45.69  52.59  57.76  62.07  68.10  70.69  75.00  76.72  78.45  81.90  86.21  88.79  90.52  92.24
GDT RMS_LOCAL    0.23   0.50   0.85   1.51   1.71   2.04   2.38   2.68   2.94   3.07   3.42   3.51   3.89   3.97   4.06   4.94   5.07   5.25   5.33   5.46
GDT RMS_ALL_CA   9.82  11.50  10.04   7.58   7.36   7.46   7.51   7.60   7.53   7.72   7.31   7.49   7.07   7.10   7.16   6.93   6.91   6.91   6.93   6.90

#      Molecule1      Molecule2       DISTANCE
LGA    P      34      P      34         20.644
LGA    T      35      T      35         16.120
LGA    K      36      K      36         13.163
LGA    P      37      P      37         10.775
LGA    N      38      N      38          7.372
LGA    P      39      P      39          1.750
LGA    F      40      F      40          3.054
LGA    Q      41      Q      41          3.190
LGA    S      42      S      42          1.143
LGA    L      43      L      43          1.480
LGA    V      44      V      44          2.518
LGA    S      45      S      45          1.349
LGA    S      46      S      46          1.027
LGA    I      47      I      47          2.523
LGA    V      48      V      48          2.173
LGA    E      49      E      49          0.883
LGA    Q      50      Q      50          2.482
LGA    Q      51      Q      51          2.857
LGA    L      52      L      52          1.845
LGA    S      53      S      53          2.013
LGA    I      54      I      54          2.198
LGA    K      55      K      55          3.193
LGA    A      56      A      56          3.124
LGA    A      57      A      57          1.391
LGA    S      58      S      58          1.329
LGA    A      59      A      59          2.123
LGA    I      60      I      60          2.157
LGA    Y      61      Y      61          2.055
LGA    G      62      G      62          1.803
LGA    R      63      R      63          1.170
LGA    V      64      V      64          2.188
LGA    E      65      E      65          2.808
LGA    Q      66      Q      66          1.775
LGA    L      67      L      67          1.640
LGA    V      68      V      68          3.456
LGA    G      69      G      69          3.554
LGA    G      70      G      70          5.681
LGA    A      71      A      71         10.389
LGA    L      72      L      72         11.457
LGA    E      73      E      73         12.215
LGA    K      74      K      74         11.307
LGA    P      75      P      75          9.999
LGA    E      76      E      76          5.384
LGA    Q      77      Q      77          3.681
LGA    L      78      L      78          7.169
LGA    Y      79      Y      79          7.886
LGA    R      80      R      80          5.674
LGA    V      81      V      81          4.196
LGA    S      82      S      82          2.913
LGA    D      83      D      83          2.506
LGA    E      84      E      84          1.050
LGA    A      85      A      85          2.622
LGA    L      86      L      86          3.911
LGA    R      87      R      87          4.811
LGA    Q      88      Q      88          5.342
LGA    A      89      A      89          8.094
LGA    G      90      G      90          3.652
LGA    V      91      V      91          4.726
LGA    S      92      S      92          4.776
LGA    K      93      K      93          5.860
LGA    R      94      R      94          4.908
LGA    K      95      K      95          4.711
LGA    I      96      I      96          3.798
LGA    E      97      E      97          2.136
LGA    Y      98      Y      98          2.540
LGA    I      99      I      99          1.765
LGA    R     100      R     100          2.469
LGA    H     101      H     101          3.257
LGA    V     102      V     102          3.555
LGA    C     103      C     103          4.086
LGA    E     104      E     104          5.862
LGA    H     105      H     105          6.729
LGA    V     106      V     106          6.906
LGA    E     107      E     107          7.882
LGA    S     108      S     108         14.572
LGA    G     109      G     109         19.620
LGA    R     110      R     110         21.955
LGA    L     111      L     111         17.911
LGA    D     112      D     112         15.910
LGA    F     113      F     113         12.048
LGA    T     114      T     114         13.698
LGA    E     115      E     115         13.175
LGA    L     116      L     116         12.495
LGA    E     117      E     117         14.425
LGA    G     118      G     118         14.749
LGA    A     119      A     119         13.641
LGA    E     120      E     120         12.365
LGA    A     121      A     121          9.174
LGA    T     122      T     122          9.339
LGA    T     123      T     123          9.302
LGA    V     124      V     124          7.010
LGA    I     125      I     125          4.731
LGA    E     126      E     126          5.338
LGA    K     127      K     127          5.968
LGA    L     128      L     128          3.388
LGA    T     129      T     129          1.041
LGA    A     130      A     130          3.310
LGA    I     131      I     131          3.951
LGA    K     132      K     132          4.354
LGA    G     133      G     133          3.851
LGA    I     134      I     134          3.217
LGA    G     135      G     135          3.990
LGA    Q     136      Q     136          8.001
LGA    W     137      W     137          4.909
LGA    T     138      T     138          5.773
LGA    A     139      A     139          5.994
LGA    E     140      E     140          3.723
LGA    M     141      M     141          1.120
LGA    F     142      F     142          2.215
LGA    M     143      M     143          3.961
LGA    M     144      M     144          3.494
LGA    F     145      F     145          3.163
LGA    S     146      S     146          3.915
LGA    L     147      L     147          2.946
LGA    G     148      G     148          5.271
LGA    R     149      R     149          2.895

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  116  116    4.0     61    2.68    43.319    38.057     2.191

LGA_LOCAL      RMSD =  2.685  Number of atoms =   61  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  7.457  Number of atoms =  116 
Std_ALL_ATOMS  RMSD =  6.809  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.399403 * X  +  -0.819952 * Y  +   0.410068 * Z  +  15.334083
  Y_new =   0.835693 * X  +  -0.509543 * Y  +  -0.204899 * Z  +  40.166946
  Z_new =   0.376955 * X  +   0.260853 * Y  +   0.888741 * Z  +  -1.877163 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.285491   -2.856102  [ DEG:    16.3574   -163.6426 ]
  Theta =  -0.386506   -2.755086  [ DEG:   -22.1452   -157.8548 ]
  Phi   =   2.016633   -1.124959  [ DEG:   115.5446    -64.4554 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0323TS168_5-D2                               
REMARK     2: T0323_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0323TS168_5-D2.T0323_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  116  116   4.0   61   2.68  38.057     6.81
REMARK  ---------------------------------------------------------- 
MOLECULE T0323TS168_5-D2
PFRMAT TS
TARGET T0323
MODEL 5
PARENT N/A
ATOM     34  CA  PRO    34      33.693  37.122  -8.668  1.00 25.00           C
ATOM     35  CA  THR    35      30.375  37.262 -10.576  1.00 25.00           C
ATOM     36  CA  LYS    36      26.532  37.414 -10.451  1.00 25.00           C
ATOM     37  CA  PRO    37      23.637  39.812 -10.798  1.00 25.00           C
ATOM     38  CA  ASN    38      20.291  40.504  -9.004  1.00 25.00           C
ATOM     39  CA  PRO    39      17.179  38.924  -7.411  1.00 25.00           C
ATOM     40  CA  PHE    40      14.477  41.560  -8.055  1.00 25.00           C
ATOM     41  CA  GLN    41      11.885  38.799  -8.627  1.00 25.00           C
ATOM     42  CA  SER    42      12.936  37.102  -5.359  1.00 25.00           C
ATOM     43  CA  LEU    43      12.610  40.432  -3.496  1.00 25.00           C
ATOM     44  CA  VAL    44       9.121  40.953  -4.986  1.00 25.00           C
ATOM     45  CA  SER    45       8.106  37.423  -3.906  1.00 25.00           C
ATOM     46  CA  SER    46       9.395  38.108  -0.366  1.00 25.00           C
ATOM     47  CA  ILE    47       7.411  41.381  -0.249  1.00 25.00           C
ATOM     48  CA  VAL    48       4.258  39.539  -1.404  1.00 25.00           C
ATOM     49  CA  GLU    49       4.785  36.885   1.306  1.00 25.00           C
ATOM     50  CA  GLN    50       5.203  39.629   3.945  1.00 25.00           C
ATOM     51  CA  GLN    51       1.978  41.310   2.743  1.00 25.00           C
ATOM     52  CA  LEU    52       0.173  38.058   3.201  1.00 25.00           C
ATOM     53  CA  SER    53      -0.535  34.654   4.848  1.00 25.00           C
ATOM     54  CA  ILE    54       1.271  31.873   2.986  1.00 25.00           C
ATOM     55  CA  LYS    55      -1.931  30.834   1.160  1.00 25.00           C
ATOM     56  CA  ALA    56      -1.771  34.007  -0.978  1.00 25.00           C
ATOM     57  CA  ALA    57       1.892  33.279  -1.828  1.00 25.00           C
ATOM     58  CA  SER    58       0.976  29.694  -2.814  1.00 25.00           C
ATOM     59  CA  ALA    59      -1.851  31.002  -5.040  1.00 25.00           C
ATOM     60  CA  ILE    60       0.563  33.467  -6.699  1.00 25.00           C
ATOM     61  CA  TYR    61       3.070  30.638  -7.316  1.00 25.00           C
ATOM     62  CA  GLY    62       0.301  28.489  -8.860  1.00 25.00           C
ATOM     63  CA  ARG    63      -0.726  31.400 -11.128  1.00 25.00           C
ATOM     64  CA  VAL    64       2.915  31.872 -12.213  1.00 25.00           C
ATOM     65  CA  GLU    65       3.195  28.133 -12.988  1.00 25.00           C
ATOM     66  CA  GLN    66      -0.027  28.294 -15.051  1.00 25.00           C
ATOM     67  CA  LEU    67       1.329  31.312 -16.979  1.00 25.00           C
ATOM     68  CA  VAL    68       4.597  29.437 -17.665  1.00 25.00           C
ATOM     69  CA  GLY    69       4.212  25.674 -17.252  1.00 25.00           C
ATOM     70  CA  GLY    70       6.378  22.757 -18.163  1.00 25.00           C
ATOM     71  CA  ALA    71       6.713  23.918 -21.750  1.00 25.00           C
ATOM     72  CA  LEU    72       6.433  27.633 -22.645  1.00 25.00           C
ATOM     73  CA  GLU    73       8.554  30.230 -24.478  1.00 25.00           C
ATOM     74  CA  LYS    74      12.407  30.084 -24.688  1.00 25.00           C
ATOM     75  CA  PRO    75      13.129  32.331 -21.694  1.00 25.00           C
ATOM     76  CA  GLU    76      11.565  35.687 -22.675  1.00 25.00           C
ATOM     77  CA  GLN    77       8.191  34.555 -21.259  1.00 25.00           C
ATOM     78  CA  LEU    78       9.889  33.495 -17.995  1.00 25.00           C
ATOM     79  CA  TYR    79      11.635  36.895 -17.769  1.00 25.00           C
ATOM     80  CA  ARG    80       8.292  38.677 -18.336  1.00 25.00           C
ATOM     81  CA  VAL    81       5.092  40.686 -17.880  1.00 25.00           C
ATOM     82  CA  SER    82       1.523  41.936 -17.931  1.00 25.00           C
ATOM     83  CA  ASP    83      -1.905  43.435 -17.166  1.00 25.00           C
ATOM     84  CA  GLU    84      -5.138  42.130 -15.581  1.00 25.00           C
ATOM     85  CA  ALA    85      -3.120  39.709 -13.404  1.00 25.00           C
ATOM     86  CA  LEU    86      -0.825  42.571 -12.307  1.00 25.00           C
ATOM     87  CA  ARG    87      -3.875  44.713 -11.426  1.00 25.00           C
ATOM     88  CA  GLN    88      -5.347  41.823  -9.390  1.00 25.00           C
ATOM     89  CA  ALA    89      -3.104  42.255  -6.367  1.00 25.00           C
ATOM     90  CA  GLY    90      -4.540  39.529  -4.107  1.00 25.00           C
ATOM     91  CA  VAL    91      -1.370  40.242  -2.039  1.00 25.00           C
ATOM     92  CA  SER    92      -1.972  43.745  -0.591  1.00 25.00           C
ATOM     93  CA  LYS    93       0.674  45.611  -2.609  1.00 25.00           C
ATOM     94  CA  ARG    94       3.955  47.573  -2.838  1.00 25.00           C
ATOM     95  CA  LYS    95       5.912  44.305  -3.225  1.00 25.00           C
ATOM     96  CA  ILE    96       3.523  43.174  -5.998  1.00 25.00           C
ATOM     97  CA  GLU    97       3.967  46.532  -7.784  1.00 25.00           C
ATOM     98  CA  TYR    98       7.774  46.193  -7.527  1.00 25.00           C
ATOM     99  CA  ILE    99       7.579  42.649  -8.966  1.00 25.00           C
ATOM    100  CA  ARG   100       5.413  43.916 -11.859  1.00 25.00           C
ATOM    101  CA  HIS   101       7.931  46.717 -12.551  1.00 25.00           C
ATOM    102  CA  VAL   102      10.795  44.174 -12.554  1.00 25.00           C
ATOM    103  CA  CYS   103       8.854  41.954 -14.996  1.00 25.00           C
ATOM    104  CA  GLU   104       8.237  44.964 -17.281  1.00 25.00           C
ATOM    105  CA  HIS   105      11.965  45.836 -17.180  1.00 25.00           C
ATOM    106  CA  VAL   106      12.860  42.219 -18.066  1.00 25.00           C
ATOM    107  CA  GLU   107      10.393  42.301 -20.995  1.00 25.00           C
ATOM    108  CA  SER   108       7.407  40.305 -22.364  1.00 25.00           C
ATOM    109  CA  GLY   109       4.832  37.769 -21.178  1.00 25.00           C
ATOM    110  CA  ARG   110       4.514  35.709 -17.988  1.00 25.00           C
ATOM    111  CA  LEU   111       6.714  35.929 -14.929  1.00 25.00           C
ATOM    112  CA  ASP   112      10.035  35.291 -13.279  1.00 25.00           C
ATOM    113  CA  PHE   113      13.816  35.505 -13.129  1.00 25.00           C
ATOM    114  CA  THR   114      16.313  34.632 -15.898  1.00 25.00           C
ATOM    115  CA  GLU   115      18.609  37.479 -14.760  1.00 25.00           C
ATOM    116  CA  LEU   116      18.408  36.228 -11.146  1.00 25.00           C
ATOM    117  CA  GLU   117      19.276  32.681 -12.299  1.00 25.00           C
ATOM    118  CA  GLY   118      22.419  33.344 -10.323  1.00 25.00           C
ATOM    119  CA  ALA   119      22.584  35.815  -7.384  1.00 25.00           C
ATOM    120  CA  GLU   120      23.501  38.989  -5.430  1.00 25.00           C
ATOM    121  CA  ALA   121      23.603  42.748  -4.851  1.00 25.00           C
ATOM    122  CA  THR   122      23.382  46.571  -4.876  1.00 25.00           C
ATOM    123  CA  THR   123      20.747  46.425  -7.652  1.00 25.00           C
ATOM    124  CA  VAL   124      18.737  43.858  -5.642  1.00 25.00           C
ATOM    125  CA  ILE   125      18.923  46.100  -2.543  1.00 25.00           C
ATOM    126  CA  GLU   126      17.722  49.095  -4.608  1.00 25.00           C
ATOM    127  CA  LYS   127      14.806  47.017  -5.968  1.00 25.00           C
ATOM    128  CA  LEU   128      13.873  45.951  -2.410  1.00 25.00           C
ATOM    129  CA  THR   129      13.966  49.603  -1.265  1.00 25.00           C
ATOM    130  CA  ALA   130      11.720  50.607  -4.199  1.00 25.00           C
ATOM    131  CA  ILE   131       9.070  48.407  -2.520  1.00 25.00           C
ATOM    132  CA  LYS   132       7.764  50.412   0.446  1.00 25.00           C
ATOM    133  CA  GLY   133       6.753  47.243   2.233  1.00 25.00           C
ATOM    134  CA  ILE   134      10.467  46.388   2.803  1.00 25.00           C
ATOM    135  CA  GLY   135      10.386  46.659   6.590  1.00 25.00           C
ATOM    136  CA  GLN   136       7.775  43.893   6.762  1.00 25.00           C
ATOM    137  CA  TRP   137      10.155  41.612   8.711  1.00 25.00           C
ATOM    138  CA  THR   138       9.891  38.952   5.969  1.00 25.00           C
ATOM    139  CA  ALA   139      10.649  41.592   3.300  1.00 25.00           C
ATOM    140  CA  GLU   140      13.697  42.770   5.296  1.00 25.00           C
ATOM    141  CA  MET   141      14.927  39.156   5.598  1.00 25.00           C
ATOM    142  CA  PHE   142      14.498  38.668   1.825  1.00 25.00           C
ATOM    143  CA  MET   143      16.463  41.887   1.160  1.00 25.00           C
ATOM    144  CA  MET   144      19.256  40.693   3.493  1.00 25.00           C
ATOM    145  CA  PHE   145      19.367  37.323   1.675  1.00 25.00           C
ATOM    146  CA  SER   146      19.582  39.123  -1.699  1.00 25.00           C
ATOM    147  CA  LEU   147      23.177  39.579  -0.383  1.00 25.00           C
ATOM    148  CA  GLY   148      26.129  39.483   2.024  1.00 25.00           C
ATOM    149  CA  ARG   149      27.195  36.913   4.592  1.00 25.00           C
TER
END
